0s autopkgtest [17:47:47]: starting date and time: 2024-03-16 17:47:47+0000
  0s autopkgtest [17:47:47]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:47:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ot45okzg/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-xvector --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-22.secgroup --name adt-noble-arm64-r-bioc-xvector-20240316-174747-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
156s autopkgtest [17:50:23]: testbed dpkg architecture: arm64
157s autopkgtest [17:50:24]: testbed apt version: 2.7.12
157s autopkgtest [17:50:24]: @@@@@@@@@@@@@@@@@@@@ test bed setup
157s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
158s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
159s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
159s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
159s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
159s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
159s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
159s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
159s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
159s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
159s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
159s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
159s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
161s Fetched 9060 kB in 3s (3429 kB/s)
161s Reading package lists...
164s Reading package lists...
164s Building dependency tree...
164s Reading state information...
165s Calculating upgrade...
165s The following packages will be REMOVED:
165s   libglib2.0-0 libssl3
165s The following NEW packages will be installed:
165s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
165s The following packages have been kept back:
165s   curl
165s The following packages will be upgraded:
165s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
165s   ubuntu-minimal ubuntu-standard
165s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
165s Need to get 4613 kB of archives.
165s After this operation, 211 kB of additional disk space will be used.
165s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
165s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
166s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
166s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
166s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
166s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
166s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
166s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
166s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
166s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
166s Fetched 4613 kB in 1s (6693 kB/s)
167s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
167s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
167s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
167s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
167s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
167s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
167s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
167s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
167s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
167s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
167s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
167s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
167s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
167s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
167s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
167s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
167s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
167s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
167s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
167s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
167s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
167s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
167s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
167s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
167s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
167s  fwupd depends on libglib2.0-0 (>= 2.79.0).
167s  bolt depends on libglib2.0-0 (>= 2.56.0).
167s 
167s (Reading database ... 
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167s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
167s Selecting previously unselected package libglib2.0-0t64:arm64.
167s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
167s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
167s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
167s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
167s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
167s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
167s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
167s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
167s  wget depends on libssl3 (>= 3.0.0).
167s  u-boot-tools depends on libssl3 (>= 3.0.0).
167s  tnftp depends on libssl3 (>= 3.0.0).
167s  tcpdump depends on libssl3 (>= 3.0.0).
167s  systemd-resolved depends on libssl3 (>= 3.0.0).
167s  systemd depends on libssl3 (>= 3.0.0).
167s  sudo depends on libssl3 (>= 3.0.0).
167s  sbsigntool depends on libssl3 (>= 3.0.0).
167s  rsync depends on libssl3 (>= 3.0.0).
167s  python3-cryptography depends on libssl3 (>= 3.0.0).
167s  openssh-server depends on libssl3 (>= 3.0.10).
167s  openssh-client depends on libssl3 (>= 3.0.10).
167s  mtd-utils depends on libssl3 (>= 3.0.0).
167s  mokutil depends on libssl3 (>= 3.0.0).
167s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
167s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
167s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
167s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
167s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
167s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
167s  libnvme1 depends on libssl3 (>= 3.0.0).
167s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
167s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
167s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
167s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
167s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
167s  kmod depends on libssl3 (>= 3.0.0).
167s  dhcpcd-base depends on libssl3 (>= 3.0.0).
167s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
167s 
167s (Reading database ... 
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167s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
167s Selecting previously unselected package libssl3t64:arm64.
167s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
167s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
167s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
167s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
167s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
167s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
167s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
167s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
167s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
167s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
167s Unpacking ubuntu-minimal (1.536) over (1.535) ...
167s Selecting previously unselected package xdg-user-dirs.
167s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
167s Unpacking xdg-user-dirs (0.18-1) ...
167s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
167s Unpacking ubuntu-standard (1.536) over (1.535) ...
168s Setting up ubuntu-minimal (1.536) ...
168s Setting up xdg-user-dirs (0.18-1) ...
168s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
168s Setting up libtirpc-common (1.3.4+ds-1.1) ...
168s Setting up ubuntu-standard (1.536) ...
168s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
168s No schema files found: doing nothing.
168s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
168s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
168s Setting up openssl (3.0.13-0ubuntu1) ...
168s Setting up readline-common (8.2-3.1) ...
168s Processing triggers for man-db (2.12.0-3) ...
169s Processing triggers for install-info (7.1-3) ...
169s Processing triggers for libc-bin (2.39-0ubuntu2) ...
169s Reading package lists...
170s Building dependency tree...
170s Reading state information...
170s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
171s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
171s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
171s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
171s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
176s Reading package lists...
176s Reading package lists...
177s Building dependency tree...
177s Reading state information...
177s Calculating upgrade...
177s The following packages have been kept back:
177s   curl
177s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
178s Reading package lists...
178s Building dependency tree...
178s Reading state information...
179s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
183s autopkgtest [17:50:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
183s autopkgtest [17:50:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-xvector
185s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-xvector 0.42.0-1 (dsc) [2177 B]
185s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-xvector 0.42.0-1 (tar) [67.8 kB]
185s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-xvector 0.42.0-1 (diff) [4536 B]
185s gpgv: Signature made Thu Nov 30 00:33:20 2023 UTC
185s gpgv:                using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502
185s gpgv:                issuer "plessy@debian.org"
185s gpgv: Can't check signature: No public key
185s dpkg-source: warning: cannot verify inline signature for ./r-bioc-xvector_0.42.0-1.dsc: no acceptable signature found
185s autopkgtest [17:50:52]: testing package r-bioc-xvector version 0.42.0-1
186s autopkgtest [17:50:53]: build not needed
187s autopkgtest [17:50:54]: test pkg-r-autopkgtest: preparing testbed
189s Reading package lists...
189s Building dependency tree...
189s Reading state information...
190s Starting pkgProblemResolver with broken count: 0
190s Starting 2 pkgProblemResolver with broken count: 0
190s Done
191s The following additional packages will be installed:
191s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
191s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
191s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
191s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
191s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
191s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
191s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
191s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
191s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
191s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
191s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
191s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
191s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
191s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
191s   libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64
191s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
191s   libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
191s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
191s   linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core
191s   r-base-dev r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb
191s   r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors r-bioc-xvector
191s   r-bioc-zlibbioc r-cran-bitops r-cran-crayon r-cran-rcurl r-cran-runit
191s   rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
191s Suggested packages:
191s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
191s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
191s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
191s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
191s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
191s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
191s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
191s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-biobase
191s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools
191s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
191s   r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-biocstyle r-cran-knitr
191s   r-cran-r.utils r-cran-data.table r-bioc-genomicalignments
191s   r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-bioc-graph
191s   r-cran-rstudioapi
191s Recommended packages:
191s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
191s   r-doc-html r-cran-testthat r-cran-withr r-cran-mockery r-cran-xml
191s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
191s   x11-xserver-utils
191s The following packages will be REMOVED:
191s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
191s The following NEW packages will be installed:
191s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
191s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
191s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
191s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
191s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
191s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
191s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
191s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
191s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
191s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
191s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
191s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
191s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
191s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
191s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
191s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
191s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
191s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
191s   libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf
191s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biostrings
191s   r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-s4vectors
191s   r-bioc-xvector r-bioc-zlibbioc r-cran-bitops r-cran-crayon r-cran-rcurl
191s   r-cran-runit rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
191s The following packages will be upgraded:
191s   curl
191s 1 upgraded, 123 newly installed, 5 to remove and 0 not upgraded.
191s Need to get 167 MB/167 MB of archives.
191s After this operation, 462 MB of additional disk space will be used.
191s Get:1 /tmp/autopkgtest.Xbzx3P/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [744 B]
191s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
192s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
192s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
192s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
192s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
192s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
192s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
192s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
192s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
192s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
192s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
192s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
192s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
192s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
192s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
192s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
192s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
192s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
192s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
192s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
192s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
192s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
192s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
192s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
192s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
192s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
192s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
192s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
192s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
193s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
193s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
193s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
193s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
193s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
193s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
193s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
193s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
193s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
193s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
193s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
193s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
193s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
193s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
193s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
193s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
193s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
193s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
193s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
194s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
194s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
194s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
194s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
194s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
194s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
194s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
194s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
194s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
194s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
194s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
194s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
194s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
194s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
194s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
194s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
194s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
194s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
194s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
194s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
194s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
194s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
194s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
194s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
194s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
194s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
194s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
194s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
194s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
194s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
194s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
194s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
194s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
194s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
194s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
194s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
194s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
194s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
194s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
194s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
194s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
194s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
194s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
194s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
195s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
195s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
195s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
195s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
195s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
195s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
195s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
195s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
195s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
195s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
195s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
195s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
195s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
195s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
195s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
195s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
196s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
196s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
196s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
196s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
196s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
196s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
196s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
196s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
196s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
196s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
196s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
196s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
196s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
196s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
197s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB]
198s Preconfiguring packages ...
199s Fetched 167 MB in 6s (29.4 MB/s)
199s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
199s  wget depends on libpsl5 (>= 0.16.0).
199s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
199s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
199s 
199s (Reading database ... 
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(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74774 files and directories currently installed.)
199s Removing libpsl5:arm64 (0.21.2-1build1) ...
200s Selecting previously unselected package libpsl5t64:arm64.
200s (Reading database ... 
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(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74769 files and directories currently installed.)
200s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
200s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
200s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
200s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
200s (Reading database ... 
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(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74775 files and directories currently installed.)
200s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
200s Selecting previously unselected package libcurl4t64:arm64.
200s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74770 files and directories currently installed.)
200s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
200s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
201s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
201s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
201s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
201s 
201s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74776 files and directories currently installed.)
201s Removing libpng16-16:arm64 (1.6.43-1) ...
201s Selecting previously unselected package libpng16-16t64:arm64.
201s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74766 files and directories currently installed.)
201s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
201s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
201s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
201s  parted depends on libreadline8 (>= 6.0).
201s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
201s  gpgsm depends on libreadline8 (>= 6.0).
201s  gpgconf depends on libreadline8 (>= 6.0).
201s  gpg depends on libreadline8 (>= 6.0).
201s  gawk depends on libreadline8 (>= 6.0).
201s  fdisk depends on libreadline8 (>= 6.0).
201s 
201s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
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201s Removing libreadline8:arm64 (8.2-3) ...
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201s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
201s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
201s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
201s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
201s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
201s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
201s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
201s  lsof depends on libtirpc3 (>= 1.0.2).
201s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
201s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
201s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
201s  iproute2 depends on libtirpc3 (>= 1.0.2).
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201s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
201s Selecting previously unselected package libtirpc3t64:arm64.
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201s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
201s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
201s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
201s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
201s Selecting previously unselected package libc-dev-bin.
201s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
201s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
201s Selecting previously unselected package linux-libc-dev:arm64.
201s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
201s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
202s Selecting previously unselected package libcrypt-dev:arm64.
202s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
202s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
202s Selecting previously unselected package libtirpc-dev:arm64.
202s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
202s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
202s Selecting previously unselected package libnsl-dev:arm64.
202s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
202s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
202s Selecting previously unselected package rpcsvc-proto.
202s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
202s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
202s Selecting previously unselected package libc6-dev:arm64.
202s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
202s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
202s Selecting previously unselected package libisl23:arm64.
202s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
202s Unpacking libisl23:arm64 (0.26-3) ...
202s Selecting previously unselected package libmpc3:arm64.
202s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
202s Unpacking libmpc3:arm64 (1.3.1-1) ...
202s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
202s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
202s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
203s Selecting previously unselected package cpp-13.
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203s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
203s Selecting previously unselected package cpp-aarch64-linux-gnu.
203s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
203s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
203s Selecting previously unselected package cpp.
203s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
203s Unpacking cpp (4:13.2.0-7ubuntu1) ...
203s Selecting previously unselected package libcc1-0:arm64.
203s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libgomp1:arm64.
203s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libitm1:arm64.
203s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libatomic1:arm64.
203s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libasan8:arm64.
203s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package liblsan0:arm64.
203s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libtsan2:arm64.
203s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libubsan1:arm64.
203s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libhwasan0:arm64.
203s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
203s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
203s Selecting previously unselected package libgcc-13-dev:arm64.
203s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
203s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
203s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
203s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
203s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
204s Selecting previously unselected package gcc-13.
204s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
204s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
204s Selecting previously unselected package gcc-aarch64-linux-gnu.
204s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
204s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
204s Selecting previously unselected package gcc.
204s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
204s Unpacking gcc (4:13.2.0-7ubuntu1) ...
204s Selecting previously unselected package libstdc++-13-dev:arm64.
205s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
205s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
205s Selecting previously unselected package g++-13-aarch64-linux-gnu.
205s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
205s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
206s Selecting previously unselected package g++-13.
206s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
206s Unpacking g++-13 (13.2.0-17ubuntu2) ...
206s Selecting previously unselected package g++-aarch64-linux-gnu.
206s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
206s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
206s Selecting previously unselected package g++.
206s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
206s Unpacking g++ (4:13.2.0-7ubuntu1) ...
207s Selecting previously unselected package build-essential.
207s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
207s Unpacking build-essential (12.10ubuntu1) ...
207s Selecting previously unselected package dctrl-tools.
207s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
207s Unpacking dctrl-tools (2.24-3build2) ...
207s Selecting previously unselected package fonts-dejavu-mono.
207s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
207s Unpacking fonts-dejavu-mono (2.37-8) ...
207s Selecting previously unselected package fonts-dejavu-core.
208s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
208s Unpacking fonts-dejavu-core (2.37-8) ...
208s Selecting previously unselected package fontconfig-config.
208s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
209s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
210s Selecting previously unselected package libfontconfig1:arm64.
210s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
210s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
210s Selecting previously unselected package fontconfig.
211s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
211s Unpacking fontconfig (2.15.0-1ubuntu1) ...
211s Selecting previously unselected package libgfortran5:arm64.
211s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
211s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
211s Selecting previously unselected package libgfortran-13-dev:arm64.
211s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
211s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
211s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
211s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
211s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
211s Selecting previously unselected package gfortran-13.
212s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
212s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
212s Selecting previously unselected package gfortran-aarch64-linux-gnu.
212s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
212s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
212s Selecting previously unselected package gfortran.
212s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
212s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
212s Selecting previously unselected package icu-devtools.
212s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
212s Unpacking icu-devtools (74.2-1ubuntu1) ...
212s Selecting previously unselected package libblas3:arm64.
212s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
212s Unpacking libblas3:arm64 (3.12.0-3) ...
212s Selecting previously unselected package libblas-dev:arm64.
213s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
213s Unpacking libblas-dev:arm64 (3.12.0-3) ...
213s Selecting previously unselected package libbz2-dev:arm64.
213s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
213s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
213s Selecting previously unselected package libpixman-1-0:arm64.
213s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ...
213s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
213s Selecting previously unselected package libxcb-render0:arm64.
214s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ...
214s Unpacking libxcb-render0:arm64 (1.15-1) ...
214s Selecting previously unselected package libxcb-shm0:arm64.
214s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ...
214s Unpacking libxcb-shm0:arm64 (1.15-1) ...
214s Selecting previously unselected package libxrender1:arm64.
214s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
214s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
214s Selecting previously unselected package libcairo2:arm64.
214s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ...
214s Unpacking libcairo2:arm64 (1.18.0-1) ...
214s Selecting previously unselected package libdatrie1:arm64.
215s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ...
215s Unpacking libdatrie1:arm64 (0.2.13-3) ...
215s Selecting previously unselected package libdeflate0:arm64.
215s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ...
215s Unpacking libdeflate0:arm64 (1.19-1) ...
215s Selecting previously unselected package libgraphite2-3:arm64.
215s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ...
215s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
215s Selecting previously unselected package libharfbuzz0b:arm64.
215s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ...
215s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
215s Selecting previously unselected package x11-common.
215s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
215s Unpacking x11-common (1:7.7+23ubuntu2) ...
215s Selecting previously unselected package libice6:arm64.
215s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ...
215s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
215s Selecting previously unselected package libicu-dev:arm64.
215s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ...
215s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
216s Selecting previously unselected package libjpeg-turbo8:arm64.
216s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
216s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
216s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
216s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
216s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
216s Selecting previously unselected package libjpeg8:arm64.
216s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ...
216s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ...
216s Selecting previously unselected package libjpeg8-dev:arm64.
216s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ...
216s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ...
216s Selecting previously unselected package libjpeg-dev:arm64.
216s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
216s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
216s Selecting previously unselected package liblapack3:arm64.
216s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ...
216s Unpacking liblapack3:arm64 (3.12.0-3) ...
216s Selecting previously unselected package liblapack-dev:arm64.
216s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ...
216s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
216s Selecting previously unselected package liblerc4:arm64.
216s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
216s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
216s Selecting previously unselected package libncurses-dev:arm64.
216s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
216s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
216s Selecting previously unselected package libthai-data.
217s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ...
217s Unpacking libthai-data (0.1.29-2) ...
217s Selecting previously unselected package libthai0:arm64.
217s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ...
217s Unpacking libthai0:arm64 (0.1.29-2) ...
217s Selecting previously unselected package libpango-1.0-0:arm64.
217s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
217s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ...
217s Selecting previously unselected package libpangoft2-1.0-0:arm64.
217s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ...
217s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
217s Selecting previously unselected package libpangocairo-1.0-0:arm64.
217s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
217s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
217s Selecting previously unselected package libpaper1:arm64.
217s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ...
217s Unpacking libpaper1:arm64 (1.1.29) ...
217s Selecting previously unselected package libpaper-utils.
217s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ...
217s Unpacking libpaper-utils (1.1.29) ...
217s Selecting previously unselected package libpcre2-16-0:arm64.
217s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-32-0:arm64.
217s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-posix3:arm64.
217s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpcre2-dev:arm64.
217s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
217s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ...
217s Selecting previously unselected package libpkgconf3:arm64.
217s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ...
217s Unpacking libpkgconf3:arm64 (1.8.1-2) ...
217s Selecting previously unselected package zlib1g-dev:arm64.
217s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ...
217s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
217s Selecting previously unselected package libpng-dev:arm64.
217s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ...
217s Unpacking libpng-dev:arm64 (1.6.43-3) ...
217s Selecting previously unselected package libreadline-dev:arm64.
217s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ...
217s Unpacking libreadline-dev:arm64 (8.2-3.1) ...
217s Selecting previously unselected package libsharpyuv0:arm64.
217s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ...
217s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ...
217s Selecting previously unselected package libsm6:arm64.
217s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ...
217s Unpacking libsm6:arm64 (2:1.2.3-1build2) ...
217s Selecting previously unselected package libtcl8.6:arm64.
217s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ...
217s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ...
217s Selecting previously unselected package libjbig0:arm64.
217s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
217s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
217s Selecting previously unselected package libwebp7:arm64.
217s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ...
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217s Selecting previously unselected package libtiff6:arm64.
217s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
217s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
217s Selecting previously unselected package libxft2:arm64.
217s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ...
217s Unpacking libxft2:arm64 (2.3.6-1) ...
217s Selecting previously unselected package libxss1:arm64.
217s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ...
217s Unpacking libxss1:arm64 (1:1.2.3-1build2) ...
217s Selecting previously unselected package libtk8.6:arm64.
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218s Selecting previously unselected package pkgconf:arm64.
218s Preparing to unpack .../097-pkgconf_1.8.1-2_arm64.deb ...
218s Unpacking pkgconf:arm64 (1.8.1-2) ...
218s Selecting previously unselected package pkg-config:arm64.
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218s Preparing to unpack .../099-zip_3.0-13_arm64.deb ...
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218s Preparing to unpack .../100-unzip_6.0-28ubuntu3_arm64.deb ...
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218s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
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218s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
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218s Selecting previously unselected package r-bioc-zlibbioc.
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219s Unpacking autopkgtest-satdep (0) ...
219s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
219s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
219s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
219s Setting up libpaper1:arm64 (1.1.29) ...
219s 
219s Creating config file /etc/papersize with new version
220s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
220s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
220s Setting up libdatrie1:arm64 (0.2.13-3) ...
220s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
220s Setting up libxcb-render0:arm64 (1.15-1) ...
220s Setting up unzip (6.0-28ubuntu3) ...
220s Setting up x11-common (1:7.7+23ubuntu2) ...
220s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
220s Setting up libdeflate0:arm64 (1.19-1) ...
220s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
220s Setting up libxcb-shm0:arm64 (1.15-1) ...
220s Setting up libpaper-utils (1.1.29) ...
220s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
220s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
220s Setting up zip (3.0-13) ...
220s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
220s Setting up libblas3:arm64 (3.12.0-3) ...
220s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
220s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
220s Setting up libpkgconf3:arm64 (1.8.1-2) ...
220s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
220s Setting up fonts-dejavu-mono (2.37-8) ...
220s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
220s Setting up libmpc3:arm64 (1.3.1-1) ...
220s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
220s Setting up icu-devtools (74.2-1ubuntu1) ...
220s Setting up fonts-dejavu-core (2.37-8) ...
220s Setting up pkgconf-bin (1.8.1-2) ...
220s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
220s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libwebp7:arm64 (1.3.2-0.4) ...
220s Setting up libreadline8t64:arm64 (8.2-3.1) ...
220s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
220s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
220s Setting up libnsl-dev:arm64 (1.3.0-3) ...
220s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
220s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
220s Setting up libthai-data (0.1.29-2) ...
220s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
220s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libisl23:arm64 (0.26-3) ...
220s Setting up libc-dev-bin (2.39-0ubuntu2) ...
220s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
220s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
220s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
220s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libblas-dev:arm64 (3.12.0-3) ...
220s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
220s Setting up dctrl-tools (2.24-3build2) ...
220s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
220s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
220s Setting up libice6:arm64 (2:1.0.10-1build2) ...
220s Setting up liblapack3:arm64 (3.12.0-3) ...
220s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
220s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
220s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
220s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
220s Setting up pkgconf:arm64 (1.8.1-2) ...
220s Setting up libthai0:arm64 (0.1.29-2) ...
220s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
220s Setting up liblapack-dev:arm64 (3.12.0-3) ...
220s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
220s Setting up pkg-config:arm64 (1.8.1-2) ...
220s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
220s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
220s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
220s Setting up curl (8.5.0-2ubuntu7) ...
220s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
220s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
220s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
220s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
220s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
220s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
220s Setting up fontconfig (2.15.0-1ubuntu1) ...
222s Regenerating fonts cache... done.
222s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
222s Setting up libxft2:arm64 (2.3.6-1) ...
223s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
223s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
223s Setting up cpp-13 (13.2.0-17ubuntu2) ...
223s Setting up libtk8.6:arm64 (8.6.13-2) ...
223s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
223s Setting up libreadline-dev:arm64 (8.2-3.1) ...
223s Setting up libcairo2:arm64 (1.18.0-1) ...
223s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ...
223s Setting up gcc-13 (13.2.0-17ubuntu2) ...
223s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
223s Setting up cpp (4:13.2.0-7ubuntu1) ...
223s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
223s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
223s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
223s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
223s Setting up g++-13 (13.2.0-17ubuntu2) ...
223s Setting up libpng-dev:arm64 (1.6.43-3) ...
223s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
223s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
223s Setting up gcc (4:13.2.0-7ubuntu1) ...
223s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
223s Setting up r-base-core (4.3.3-2build1) ...
223s 
223s Creating config file /etc/R/Renviron with new version
223s Setting up r-cran-crayon (1.5.2-1) ...
223s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
223s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
223s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
223s Setting up r-bioc-biocgenerics (0.48.1-2) ...
223s Setting up gfortran (4:13.2.0-7ubuntu1) ...
223s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
223s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
223s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
223s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
223s Setting up r-cran-bitops (1.0-7-1) ...
223s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
223s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
223s Setting up r-cran-runit (0.4.32-3) ...
223s Setting up g++ (4:13.2.0-7ubuntu1) ...
223s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
223s Setting up build-essential (12.10ubuntu1) ...
223s Setting up r-bioc-iranges (2.36.0-1) ...
223s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
223s Setting up r-base-dev (4.3.3-2build1) ...
223s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
223s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
223s Setting up r-bioc-xvector (0.42.0-1) ...
223s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
223s Setting up autopkgtest-satdep (0) ...
223s Processing triggers for man-db (2.12.0-3) ...
224s Processing triggers for install-info (7.1-3) ...
224s Processing triggers for libc-bin (2.39-0ubuntu2) ...
231s (Reading database ... 81177 files and directories currently installed.)
231s Removing autopkgtest-satdep (0) ...
232s autopkgtest [17:51:39]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
232s autopkgtest [17:51:39]: test pkg-r-autopkgtest: [-----------------------
232s Test: Try to load the R library XVector
234s 
234s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
234s Copyright (C) 2024 The R Foundation for Statistical Computing
234s Platform: aarch64-unknown-linux-gnu (64-bit)
234s 
234s R is free software and comes with ABSOLUTELY NO WARRANTY.
234s You are welcome to redistribute it under certain conditions.
234s Type 'license()' or 'licence()' for distribution details.
234s 
234s R is a collaborative project with many contributors.
234s Type 'contributors()' for more information and
234s 'citation()' on how to cite R or R packages in publications.
234s 
234s Type 'demo()' for some demos, 'help()' for on-line help, or
234s 'help.start()' for an HTML browser interface to help.
234s Type 'q()' to quit R.
234s 
234s > library('XVector')
234s Loading required package: BiocGenerics
234s 
234s Attaching package: ‘BiocGenerics’
234s 
234s The following objects are masked from ‘package:stats’:
234s 
234s     IQR, mad, sd, var, xtabs
234s 
234s The following objects are masked from ‘package:base’:
234s 
234s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
234s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
234s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
234s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
234s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
234s     table, tapply, union, unique, unsplit, which.max, which.min
234s 
234s Loading required package: S4Vectors
234s Loading required package: stats4
235s 
235s Attaching package: ‘S4Vectors’
235s 
235s The following object is masked from ‘package:utils’:
235s 
235s     findMatches
235s 
235s The following objects are masked from ‘package:base’:
235s 
235s     expand.grid, I, unname
235s 
235s Loading required package: IRanges
236s > 
236s > 
236s Other tests are currently unsupported!
236s They will be progressively added.
236s autopkgtest [17:51:43]: test pkg-r-autopkgtest: -----------------------]
237s autopkgtest [17:51:44]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
237s pkg-r-autopkgtest    PASS
237s autopkgtest [17:51:44]: @@@@@@@@@@@@@@@@@@@@ summary
237s pkg-r-autopkgtest    PASS
256s Creating nova instance adt-noble-arm64-r-bioc-xvector-20240316-174747-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...