0s autopkgtest [10:11:29]: starting date and time: 2024-03-25 10:11:29+0000 0s autopkgtest [10:11:29]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [10:11:29]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qw0mmcoo/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:curl,src:gnutls28,src:libpsl,src:nettle,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos01-arm64-6.secgroup --name adt-noble-arm64-r-bioc-variantannotation-20240325-101129-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 107s autopkgtest [10:13:16]: testbed dpkg architecture: arm64 107s autopkgtest [10:13:16]: testbed apt version: 2.7.12 107s autopkgtest [10:13:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 108s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 108s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 108s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.8 kB] 108s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3987 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 109s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 109s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 109s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 109s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 109s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 109s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 109s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 109s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 115s Fetched 9851 kB in 2s (4388 kB/s) 116s Reading package lists... 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 122s Calculating upgrade... 123s The following packages will be REMOVED: 123s libssl3 123s The following NEW packages will be installed: 123s libssl3t64 123s The following packages have been kept back: 123s curl 123s The following packages will be upgraded: 123s openssl 123s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 123s Need to get 2777 kB of archives. 123s After this operation, 139 kB of additional disk space will be used. 123s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 124s Fetched 2777 kB in 1s (3884 kB/s) 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 125s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 125s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 125s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 125s wget depends on libssl3 (>= 3.0.0). 125s u-boot-tools depends on libssl3 (>= 3.0.0). 125s tnftp depends on libssl3 (>= 3.0.0). 125s tcpdump depends on libssl3 (>= 3.0.0). 125s systemd-resolved depends on libssl3 (>= 3.0.0). 125s systemd depends on libssl3 (>= 3.0.0). 125s sudo depends on libssl3 (>= 3.0.0). 125s sbsigntool depends on libssl3 (>= 3.0.0). 125s rsync depends on libssl3 (>= 3.0.0). 125s python3-cryptography depends on libssl3 (>= 3.0.0). 125s openssh-server depends on libssl3 (>= 3.0.10). 125s openssh-client depends on libssl3 (>= 3.0.10). 125s mtd-utils depends on libssl3 (>= 3.0.0). 125s mokutil depends on libssl3 (>= 3.0.0). 125s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 125s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 125s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 125s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 125s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 125s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 125s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 125s libnvme1 depends on libssl3 (>= 3.0.0). 125s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 125s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 125s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 125s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 125s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 125s kmod depends on libssl3 (>= 3.0.0). 125s dhcpcd-base depends on libssl3 (>= 3.0.0). 125s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 125s 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 125s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 125s Selecting previously unselected package libssl3t64:arm64. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 125s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 125s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 126s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 126s Setting up openssl (3.0.13-0ubuntu2) ... 126s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for libc-bin (2.39-0ubuntu6) ... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 130s sh: Attempting to set up Debian/Ubuntu apt sources automatically 130s sh: Distribution appears to be Ubuntu 132s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s eatmydata is already the newest version (131-1). 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 136s dbus is already the newest version (1.14.10-4ubuntu1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s rng-tools-debian is already the newest version (2.4). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 139s Building dependency tree... 139s Reading state information... 140s The following packages will be REMOVED: 140s cloud-init* python3-configobj* python3-debconf* 141s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 141s After this operation, 3256 kB disk space will be freed. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 141s Removing cloud-init (24.1.2-0ubuntu1) ... 142s Removing python3-configobj (5.0.8-3) ... 142s Removing python3-debconf (1.5.86) ... 142s Processing triggers for man-db (2.12.0-3) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 143s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 144s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 144s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 145s invoke-rc.d: policy-rc.d denied execution of try-restart. 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 147s linux-generic is already the newest version (6.8.0-11.11+1). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 147s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 153s Reading package lists... 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 155s Calculating upgrade... 156s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s autopkgtest [10:14:07]: rebooting testbed after setup commands that affected boot 314s autopkgtest [10:16:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 317s autopkgtest [10:16:46]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 319s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 319s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 319s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 320s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 320s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 320s gpgv: issuer "tillea@rki.de" 320s gpgv: Can't check signature: No public key 320s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 320s autopkgtest [10:16:49]: testing package r-bioc-variantannotation version 1.48.1-1 320s autopkgtest [10:16:49]: build not needed 325s autopkgtest [10:16:54]: test pkg-r-autopkgtest: preparing testbed 327s Reading package lists... 327s Building dependency tree... 327s Reading state information... 328s Starting pkgProblemResolver with broken count: 0 328s Starting 2 pkgProblemResolver with broken count: 0 328s Done 330s The following additional packages will be installed: 330s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 330s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 330s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 330s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 330s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 330s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 330s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 330s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 330s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 330s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 330s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 330s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 330s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 330s libjs-highlight.js libjs-jquery libjs-jquery-datatables 330s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 330s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 330s libjs-popper.js libjs-prettify libjs-sifter.js 330s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 330s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 330s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 330s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 330s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 330s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 330s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 330s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 330s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 330s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 330s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 330s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 330s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 330s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 330s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 330s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 330s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 330s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 330s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 330s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 330s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 330s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 330s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 330s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 330s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 330s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 330s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 330s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 330s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 330s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 330s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 330s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 330s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 330s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 330s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 330s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 330s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 330s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 330s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 330s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 330s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 330s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 330s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 330s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 330s x11-common xdg-utils zip zlib1g-dev 330s Suggested packages: 330s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 330s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 330s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 330s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 330s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 330s libboost-context1.83-dev libboost-contract1.83-dev 330s libboost-coroutine1.83-dev libboost-date-time1.83-dev 330s libboost-exception1.83-dev libboost-fiber1.83-dev 330s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 330s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 330s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 330s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 330s libboost-numpy1.83-dev libboost-program-options1.83-dev 330s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 330s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 330s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 330s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 330s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 330s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 330s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 330s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 330s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 330s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 330s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 330s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 330s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 330s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 330s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 330s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 330s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 330s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 330s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 330s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 330s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 330s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 330s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 330s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 330s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 330s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 330s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 330s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 330s hintview texlive-latex-base-doc wp2latex 330s Recommended packages: 330s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 330s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 330s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 330s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 330s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 330s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 330s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 330s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 330s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 330s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 330s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 330s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 330s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 330s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 330s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 330s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 330s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 330s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 330s x11-xserver-utils 330s The following NEW packages will be installed: 330s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 330s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 330s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 330s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 330s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 330s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 330s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 330s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 330s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 330s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 330s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 330s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 330s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 330s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 330s libjs-highlight.js libjs-jquery libjs-jquery-datatables 330s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 330s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 330s libjs-popper.js libjs-prettify libjs-sifter.js 330s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 330s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 330s libncurses-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 330s libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev 330s libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 330s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 330s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtk8.6 libtsan2 330s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 330s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev 330s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 330s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 330s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 330s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 330s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 330s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 330s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 330s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 330s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 330s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 330s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 330s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 330s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 330s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 330s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 330s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 330s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 330s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 330s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 330s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 330s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 330s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 330s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 330s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 330s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 330s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 330s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 330s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 330s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 330s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 330s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 330s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 330s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 330s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 330s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 330s x11-common xdg-utils zip zlib1g-dev 330s 0 upgraded, 298 newly installed, 0 to remove and 0 not upgraded. 330s Need to get 457 MB/457 MB of archives. 330s After this operation, 1393 MB of additional disk space will be used. 330s Get:1 /tmp/autopkgtest.KufL8z/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 330s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 330s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 331s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 331s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 331s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 331s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 331s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 331s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 331s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 331s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 331s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 331s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 331s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 331s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 331s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 331s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 331s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 331s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 331s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 332s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 332s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 332s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 333s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 333s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 333s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 333s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 333s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 333s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 333s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 333s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 333s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 333s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 333s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 333s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 333s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 333s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 333s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 334s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 334s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 334s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 334s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 334s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 334s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 334s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 335s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 335s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 335s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 335s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 335s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 335s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 335s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 335s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 335s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 335s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 335s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 335s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 335s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 335s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 335s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 335s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 335s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 335s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 335s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 335s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 335s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 335s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 335s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 335s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 335s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 336s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 336s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 336s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 336s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 336s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 336s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 336s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 336s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 336s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 336s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 336s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 336s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 336s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 336s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 336s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 336s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 336s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 336s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 336s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 336s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 336s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 336s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 336s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 336s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 337s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 337s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 337s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 337s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 337s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 337s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 337s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 337s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 337s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 337s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 337s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 337s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 337s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 337s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 337s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 337s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 337s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 337s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 337s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 337s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 337s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 337s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 337s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 337s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 337s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 337s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 337s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 337s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 337s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 337s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 337s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 337s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 337s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 337s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 338s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 338s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 338s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 338s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 338s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 338s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 338s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 338s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 338s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 339s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 339s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 339s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 339s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 339s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 339s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 339s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 339s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 339s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 339s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 339s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 339s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 339s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 339s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 339s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 339s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 339s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 339s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 339s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 340s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 340s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 340s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 340s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 340s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 340s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 340s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 340s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 340s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 340s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 340s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 340s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 340s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 340s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 340s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 340s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 340s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 340s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 340s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 340s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 340s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 340s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 340s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 340s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 340s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 340s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 340s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 340s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 341s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 341s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 341s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 341s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 341s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 341s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 341s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 341s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 341s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 341s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 341s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 341s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 341s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 341s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 341s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 341s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 341s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 341s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 341s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 342s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 342s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 342s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 342s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 342s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 342s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 342s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 342s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 342s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 342s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 342s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 342s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 342s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 342s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 342s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 342s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 342s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 342s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 342s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 342s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 342s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 342s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 342s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 343s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 343s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 343s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 343s Get:230 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 343s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 343s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 343s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 343s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 343s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 343s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 343s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 343s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 343s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 343s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 343s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 343s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 343s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 343s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 343s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 343s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 343s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 343s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 343s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 343s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 343s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 343s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 343s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 343s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 344s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 344s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 347s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 347s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 347s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 347s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 347s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 347s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 347s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 347s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 347s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 347s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 347s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 347s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 347s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 348s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 348s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 348s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 348s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 348s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 348s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 348s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 348s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 348s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 348s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 348s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 348s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 348s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 349s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 349s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 349s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 349s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 349s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 349s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 349s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 349s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 349s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 349s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 349s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 349s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 349s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 349s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 349s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 350s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 351s Preconfiguring packages ... 351s Fetched 457 MB in 20s (23.3 MB/s) 351s Selecting previously unselected package libc-dev-bin. 352s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 352s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 352s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 352s Selecting previously unselected package linux-libc-dev:arm64. 352s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 352s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 352s Selecting previously unselected package libcrypt-dev:arm64. 352s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 352s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 352s Selecting previously unselected package rpcsvc-proto. 352s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 352s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 353s Selecting previously unselected package libc6-dev:arm64. 353s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_arm64.deb ... 353s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 353s Selecting previously unselected package libisl23:arm64. 353s Preparing to unpack .../005-libisl23_0.26-3_arm64.deb ... 353s Unpacking libisl23:arm64 (0.26-3) ... 353s Selecting previously unselected package libmpc3:arm64. 353s Preparing to unpack .../006-libmpc3_1.3.1-1_arm64.deb ... 353s Unpacking libmpc3:arm64 (1.3.1-1) ... 353s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 353s Preparing to unpack .../007-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 353s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 353s Selecting previously unselected package cpp-13. 353s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 353s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 353s Selecting previously unselected package cpp-aarch64-linux-gnu. 354s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 354s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 354s Selecting previously unselected package cpp. 354s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 354s Unpacking cpp (4:13.2.0-7ubuntu1) ... 354s Selecting previously unselected package libcc1-0:arm64. 354s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libgomp1:arm64. 354s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libitm1:arm64. 354s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libatomic1:arm64. 354s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libasan8:arm64. 354s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package liblsan0:arm64. 354s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libtsan2:arm64. 354s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libubsan1:arm64. 354s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 354s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 354s Selecting previously unselected package libhwasan0:arm64. 354s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 355s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 355s Selecting previously unselected package libgcc-13-dev:arm64. 355s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 355s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 355s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 355s Preparing to unpack .../021-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 355s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package gcc-13. 356s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package gcc-aarch64-linux-gnu. 356s Preparing to unpack .../023-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 356s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 356s Selecting previously unselected package gcc. 356s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 356s Unpacking gcc (4:13.2.0-7ubuntu1) ... 356s Selecting previously unselected package libstdc++-13-dev:arm64. 356s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 356s Selecting previously unselected package g++-13-aarch64-linux-gnu. 356s Preparing to unpack .../026-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 356s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 357s Selecting previously unselected package g++-13. 357s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_arm64.deb ... 357s Unpacking g++-13 (13.2.0-17ubuntu2) ... 357s Selecting previously unselected package g++-aarch64-linux-gnu. 357s Preparing to unpack .../028-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 357s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 357s Selecting previously unselected package g++. 357s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 357s Unpacking g++ (4:13.2.0-7ubuntu1) ... 357s Selecting previously unselected package build-essential. 357s Preparing to unpack .../030-build-essential_12.10ubuntu1_arm64.deb ... 357s Unpacking build-essential (12.10ubuntu1) ... 357s Selecting previously unselected package dctrl-tools. 357s Preparing to unpack .../031-dctrl-tools_2.24-3build2_arm64.deb ... 357s Unpacking dctrl-tools (2.24-3build2) ... 357s Selecting previously unselected package fonts-dejavu-mono. 357s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 357s Unpacking fonts-dejavu-mono (2.37-8) ... 357s Selecting previously unselected package fonts-dejavu-core. 357s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 357s Unpacking fonts-dejavu-core (2.37-8) ... 357s Selecting previously unselected package fontconfig-config. 357s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 358s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 358s Selecting previously unselected package libfontconfig1:arm64. 358s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 358s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 358s Selecting previously unselected package fontconfig. 358s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 358s Unpacking fontconfig (2.15.0-1ubuntu1) ... 358s Selecting previously unselected package fonts-font-awesome. 358s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 358s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 358s Selecting previously unselected package fonts-glyphicons-halflings. 358s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 358s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 358s Selecting previously unselected package fonts-lmodern. 358s Preparing to unpack .../039-fonts-lmodern_2.005-1_all.deb ... 358s Unpacking fonts-lmodern (2.005-1) ... 358s Selecting previously unselected package fonts-mathjax. 358s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 358s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 358s Selecting previously unselected package libgfortran5:arm64. 359s Preparing to unpack .../041-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 359s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 359s Selecting previously unselected package libgfortran-13-dev:arm64. 359s Preparing to unpack .../042-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 359s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 359s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 359s Preparing to unpack .../043-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 359s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 359s Selecting previously unselected package gfortran-13. 359s Preparing to unpack .../044-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 359s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 359s Selecting previously unselected package gfortran-aarch64-linux-gnu. 359s Preparing to unpack .../045-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 359s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 359s Selecting previously unselected package gfortran. 359s Preparing to unpack .../046-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 359s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 359s Selecting previously unselected package icu-devtools. 359s Preparing to unpack .../047-icu-devtools_74.2-1ubuntu1_arm64.deb ... 359s Unpacking icu-devtools (74.2-1ubuntu1) ... 359s Selecting previously unselected package javascript-common. 359s Preparing to unpack .../048-javascript-common_11+nmu1_all.deb ... 359s Unpacking javascript-common (11+nmu1) ... 359s Selecting previously unselected package libio-string-perl. 359s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ... 359s Unpacking libio-string-perl (1.08-4) ... 360s Selecting previously unselected package liblatex-tounicode-perl. 360s Preparing to unpack .../050-liblatex-tounicode-perl_0.54-2_all.deb ... 360s Unpacking liblatex-tounicode-perl (0.54-2) ... 360s Selecting previously unselected package libbibtex-parser-perl. 360s Preparing to unpack .../051-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 360s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 360s Selecting previously unselected package libblas3:arm64. 360s Preparing to unpack .../052-libblas3_3.12.0-3_arm64.deb ... 360s Unpacking libblas3:arm64 (3.12.0-3) ... 360s Selecting previously unselected package libblas-dev:arm64. 360s Preparing to unpack .../053-libblas-dev_3.12.0-3_arm64.deb ... 360s Unpacking libblas-dev:arm64 (3.12.0-3) ... 360s Selecting previously unselected package libboost1.83-dev:arm64. 360s Preparing to unpack .../054-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 360s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 365s Selecting previously unselected package libboost-dev:arm64. 365s Preparing to unpack .../055-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 365s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 365s Selecting previously unselected package libbz2-dev:arm64. 365s Preparing to unpack .../056-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 365s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 365s Selecting previously unselected package libpixman-1-0:arm64. 365s Preparing to unpack .../057-libpixman-1-0_0.42.2-1_arm64.deb ... 365s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 365s Selecting previously unselected package libxcb-render0:arm64. 365s Preparing to unpack .../058-libxcb-render0_1.15-1_arm64.deb ... 365s Unpacking libxcb-render0:arm64 (1.15-1) ... 365s Selecting previously unselected package libxcb-shm0:arm64. 365s Preparing to unpack .../059-libxcb-shm0_1.15-1_arm64.deb ... 365s Unpacking libxcb-shm0:arm64 (1.15-1) ... 366s Selecting previously unselected package libxrender1:arm64. 366s Preparing to unpack .../060-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 366s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 366s Selecting previously unselected package libcairo2:arm64. 366s Preparing to unpack .../061-libcairo2_1.18.0-1_arm64.deb ... 366s Unpacking libcairo2:arm64 (1.18.0-1) ... 366s Selecting previously unselected package libdatrie1:arm64. 366s Preparing to unpack .../062-libdatrie1_0.2.13-3_arm64.deb ... 366s Unpacking libdatrie1:arm64 (0.2.13-3) ... 366s Selecting previously unselected package libdeflate0:arm64. 366s Preparing to unpack .../063-libdeflate0_1.19-1_arm64.deb ... 366s Unpacking libdeflate0:arm64 (1.19-1) ... 366s Selecting previously unselected package libgraphite2-3:arm64. 366s Preparing to unpack .../064-libgraphite2-3_1.3.14-2_arm64.deb ... 366s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 366s Selecting previously unselected package libharfbuzz0b:arm64. 366s Preparing to unpack .../065-libharfbuzz0b_8.3.0-2_arm64.deb ... 366s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 366s Selecting previously unselected package x11-common. 366s Preparing to unpack .../066-x11-common_1%3a7.7+23ubuntu2_all.deb ... 366s Unpacking x11-common (1:7.7+23ubuntu2) ... 366s Selecting previously unselected package libice6:arm64. 366s Preparing to unpack .../067-libice6_2%3a1.0.10-1build2_arm64.deb ... 366s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 366s Selecting previously unselected package libicu-dev:arm64. 366s Preparing to unpack .../068-libicu-dev_74.2-1ubuntu1_arm64.deb ... 366s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 367s Selecting previously unselected package libjpeg-turbo8:arm64. 367s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 367s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 367s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 367s Preparing to unpack .../070-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 367s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 367s Selecting previously unselected package libjpeg8:arm64. 367s Preparing to unpack .../071-libjpeg8_8c-2ubuntu11_arm64.deb ... 367s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 367s Selecting previously unselected package libjpeg8-dev:arm64. 367s Preparing to unpack .../072-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 367s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 367s Selecting previously unselected package libjpeg-dev:arm64. 367s Preparing to unpack .../073-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 367s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 367s Selecting previously unselected package libjs-bootstrap. 367s Preparing to unpack .../074-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 367s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 367s Selecting previously unselected package libjs-popper.js. 367s Preparing to unpack .../075-libjs-popper.js_1.16.1+ds-6_all.deb ... 367s Unpacking libjs-popper.js (1.16.1+ds-6) ... 367s Selecting previously unselected package libjs-bootstrap4. 367s Preparing to unpack .../076-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 367s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 367s Selecting previously unselected package libjs-d3. 367s Preparing to unpack .../077-libjs-d3_3.5.17-4_all.deb ... 367s Unpacking libjs-d3 (3.5.17-4) ... 367s Selecting previously unselected package libjs-es5-shim. 367s Preparing to unpack .../078-libjs-es5-shim_4.6.7-2_all.deb ... 367s Unpacking libjs-es5-shim (4.6.7-2) ... 368s Selecting previously unselected package libjs-highlight.js. 368s Preparing to unpack .../079-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 368s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 368s Selecting previously unselected package libjs-jquery. 368s Preparing to unpack .../080-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 368s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 368s Selecting previously unselected package libjs-jquery-datatables. 368s Preparing to unpack .../081-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 368s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 368s Selecting previously unselected package libjs-jquery-datatables-extensions. 368s Preparing to unpack .../082-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 368s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 368s Selecting previously unselected package libjs-sifter.js. 368s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 368s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 368s Selecting previously unselected package libjs-microplugin.js. 368s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 368s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 368s Selecting previously unselected package libjs-jquery-selectize.js. 368s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 368s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 368s Selecting previously unselected package libjs-jquery-ui. 368s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 368s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 368s Selecting previously unselected package libjs-json. 368s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 368s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 368s Selecting previously unselected package libjs-lunr. 368s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 368s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 369s Selecting previously unselected package libjs-prettify. 369s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 369s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 369s Selecting previously unselected package libkpathsea6:arm64. 369s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 369s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 369s Selecting previously unselected package liblapack3:arm64. 369s Preparing to unpack .../091-liblapack3_3.12.0-3_arm64.deb ... 369s Unpacking liblapack3:arm64 (3.12.0-3) ... 369s Selecting previously unselected package liblapack-dev:arm64. 369s Preparing to unpack .../092-liblapack-dev_3.12.0-3_arm64.deb ... 369s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 369s Selecting previously unselected package liblerc4:arm64. 369s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 369s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 369s Selecting previously unselected package liblua5.4-0:arm64. 369s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_arm64.deb ... 369s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 369s Selecting previously unselected package libncurses-dev:arm64. 369s Preparing to unpack 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370s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 370s Selecting previously unselected package libpcre2-dev:arm64. 370s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 370s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 370s Selecting previously unselected package libpkgconf3:arm64. 370s Preparing to unpack .../107-libpkgconf3_1.8.1-2_arm64.deb ... 370s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 370s Selecting previously unselected package zlib1g-dev:arm64. 370s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 370s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 371s Selecting previously unselected package libpng-dev:arm64. 371s Preparing to unpack .../109-libpng-dev_1.6.43-1_arm64.deb ... 371s Unpacking libpng-dev:arm64 (1.6.43-1) ... 371s Selecting previously unselected package libpotrace0:arm64. 371s Preparing to unpack .../110-libpotrace0_1.16-2_arm64.deb ... 371s Unpacking libpotrace0:arm64 (1.16-2) ... 371s Selecting previously unselected package libptexenc1:arm64. 371s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_arm64.deb ... 371s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 371s Selecting previously unselected package libreadline-dev:arm64. 371s Preparing to unpack .../112-libreadline-dev_8.2-3_arm64.deb ... 371s Unpacking libreadline-dev:arm64 (8.2-3) ... 371s Selecting previously unselected package libsharpyuv0:arm64. 371s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_arm64.deb ... 371s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 371s Selecting previously unselected package libsm6:arm64. 371s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_arm64.deb ... 371s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 371s Selecting previously unselected package libsynctex2:arm64. 371s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_arm64.deb ... 371s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 371s Selecting previously unselected package libtcl8.6:arm64. 371s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 371s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 371s Selecting previously unselected package libteckit0:arm64. 371s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_arm64.deb ... 371s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 371s Selecting previously unselected package libtexlua53-5:arm64. 371s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 371s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 371s Selecting previously unselected package libjbig0:arm64. 371s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 371s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 371s Selecting previously unselected package libwebp7:arm64. 371s Preparing to unpack .../120-libwebp7_1.3.2-0.4_arm64.deb ... 371s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 371s Selecting previously unselected package libtiff6:arm64. 371s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 371s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 372s Selecting previously unselected package libxft2:arm64. 372s Preparing to unpack .../122-libxft2_2.3.6-1_arm64.deb ... 372s Unpacking libxft2:arm64 (2.3.6-1) ... 372s Selecting previously unselected package libxss1:arm64. 372s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_arm64.deb ... 372s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 372s Selecting previously unselected package libtk8.6:arm64. 372s Preparing to unpack .../124-libtk8.6_8.6.14-1_arm64.deb ... 372s Unpacking libtk8.6:arm64 (8.6.14-1) ... 372s Selecting previously unselected package libxt6:arm64. 372s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_arm64.deb ... 372s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 372s Selecting previously unselected package libxmu6:arm64. 372s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_arm64.deb ... 372s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 372s Selecting previously unselected package libxpm4:arm64. 372s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_arm64.deb ... 372s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 372s Selecting previously unselected package libxaw7:arm64. 372s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_arm64.deb ... 372s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 372s Selecting previously unselected package libxi6:arm64. 372s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_arm64.deb ... 372s Unpacking libxi6:arm64 (2:1.8.1-1) ... 372s Selecting previously unselected package libzzip-0-13:arm64. 372s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 372s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 372s Selecting previously unselected package node-bootstrap-sass. 372s Preparing to unpack .../131-node-bootstrap-sass_3.4.3-2_all.deb ... 372s Unpacking node-bootstrap-sass (3.4.3-2) ... 372s Selecting previously unselected package node-html5shiv. 372s Preparing to unpack .../132-node-html5shiv_3.7.3+dfsg-5_all.deb ... 372s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 372s Selecting previously unselected package node-normalize.css. 373s Preparing to unpack .../133-node-normalize.css_8.0.1-5_all.deb ... 373s Unpacking node-normalize.css (8.0.1-5) ... 373s Selecting previously unselected package pandoc-data. 373s Preparing to unpack .../134-pandoc-data_3.1.3-1_all.deb ... 373s Unpacking pandoc-data (3.1.3-1) ... 373s Selecting previously unselected package pandoc. 373s Preparing to unpack .../135-pandoc_3.1.3+ds-2_arm64.deb ... 373s Unpacking pandoc (3.1.3+ds-2) ... 374s Selecting previously unselected package pkgconf-bin. 374s Preparing to unpack .../136-pkgconf-bin_1.8.1-2_arm64.deb ... 374s Unpacking pkgconf-bin (1.8.1-2) ... 374s Selecting previously unselected package pkgconf:arm64. 374s Preparing to unpack .../137-pkgconf_1.8.1-2_arm64.deb ... 374s Unpacking pkgconf:arm64 (1.8.1-2) ... 375s Selecting previously unselected package pkg-config:arm64. 375s Preparing to unpack .../138-pkg-config_1.8.1-2_arm64.deb ... 375s Unpacking pkg-config:arm64 (1.8.1-2) ... 375s Selecting previously unselected package zip. 375s Preparing to unpack .../139-zip_3.0-13_arm64.deb ... 375s Unpacking zip (3.0-13) ... 375s Selecting previously unselected package unzip. 375s Preparing to unpack .../140-unzip_6.0-28ubuntu3_arm64.deb ... 375s Unpacking unzip (6.0-28ubuntu3) ... 375s Selecting previously unselected package xdg-utils. 375s Preparing to unpack .../141-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 375s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 375s Selecting previously unselected package r-base-core. 375s Preparing to unpack .../142-r-base-core_4.3.2-1build1_arm64.deb ... 375s Unpacking r-base-core (4.3.2-1build1) ... 376s Selecting previously unselected package liblzma-dev:arm64. 376s Preparing to unpack .../143-liblzma-dev_5.4.5-0.3_arm64.deb ... 376s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 376s Selecting previously unselected package r-base-dev. 376s Preparing to unpack .../144-r-base-dev_4.3.2-1build1_all.deb ... 376s Unpacking r-base-dev (4.3.2-1build1) ... 376s Selecting previously unselected package pkg-r-autopkgtest. 376s Preparing to unpack .../145-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 376s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 376s Selecting previously unselected package r-bioc-biocgenerics. 376s Preparing to unpack .../146-r-bioc-biocgenerics_0.48.1-2_all.deb ... 376s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 376s Selecting previously unselected package r-bioc-biobase. 376s Preparing to unpack .../147-r-bioc-biobase_2.62.0-1_arm64.deb ... 376s Unpacking r-bioc-biobase (2.62.0-1) ... 376s Selecting previously unselected package r-bioc-s4vectors. 376s Preparing to unpack .../148-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 376s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 376s Selecting previously unselected package r-bioc-iranges. 376s Preparing to unpack .../149-r-bioc-iranges_2.36.0-1_arm64.deb ... 376s Unpacking r-bioc-iranges (2.36.0-1) ... 376s Selecting previously unselected package r-cran-dbi. 376s Preparing to unpack .../150-r-cran-dbi_1.2.2-1_all.deb ... 376s Unpacking r-cran-dbi (1.2.2-1) ... 376s Selecting previously unselected package r-cran-bit. 376s Preparing to unpack .../151-r-cran-bit_4.0.5-1_arm64.deb ... 376s Unpacking r-cran-bit (4.0.5-1) ... 376s Selecting previously unselected package r-cran-bit64. 376s Preparing to unpack .../152-r-cran-bit64_4.0.5-1_arm64.deb ... 376s Unpacking r-cran-bit64 (4.0.5-1) ... 376s Selecting previously unselected package r-cran-rlang. 377s Preparing to unpack .../153-r-cran-rlang_1.1.3-1_arm64.deb ... 377s Unpacking r-cran-rlang (1.1.3-1) ... 377s Selecting previously unselected package r-cran-cli. 377s Preparing to unpack .../154-r-cran-cli_3.6.2-1_arm64.deb ... 377s Unpacking r-cran-cli (3.6.2-1) ... 377s Selecting previously unselected package r-cran-glue. 377s Preparing to unpack .../155-r-cran-glue_1.7.0-1_arm64.deb ... 377s Unpacking r-cran-glue (1.7.0-1) ... 377s Selecting previously unselected package r-cran-lifecycle. 377s Preparing to unpack .../156-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 377s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 377s Selecting previously unselected package r-cran-vctrs. 377s Preparing to unpack .../157-r-cran-vctrs_0.6.5-1_arm64.deb ... 377s Unpacking r-cran-vctrs (0.6.5-1) ... 377s Selecting previously unselected package r-cran-blob. 377s Preparing to unpack .../158-r-cran-blob_1.2.4-1_all.deb ... 377s Unpacking r-cran-blob (1.2.4-1) ... 377s Selecting previously unselected package r-cran-fastmap. 377s Preparing to unpack .../159-r-cran-fastmap_1.1.1-1_arm64.deb ... 377s Unpacking r-cran-fastmap (1.1.1-1) ... 377s Selecting previously unselected package r-cran-cachem. 377s Preparing to unpack .../160-r-cran-cachem_1.0.8-1_arm64.deb ... 377s Unpacking r-cran-cachem (1.0.8-1) ... 377s Selecting previously unselected package r-cran-memoise. 377s Preparing to unpack .../161-r-cran-memoise_2.0.1-1_all.deb ... 377s Unpacking r-cran-memoise (2.0.1-1) ... 377s Selecting previously unselected package r-cran-pkgconfig. 377s Preparing to unpack .../162-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 377s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 378s Selecting previously unselected package r-cran-plogr. 378s Preparing to unpack .../163-r-cran-plogr_0.2.0-3build1_all.deb ... 378s Unpacking r-cran-plogr (0.2.0-3build1) ... 378s Selecting previously unselected package r-cran-cpp11. 378s Preparing to unpack .../164-r-cran-cpp11_0.4.7-1_all.deb ... 378s Unpacking r-cran-cpp11 (0.4.7-1) ... 378s Selecting previously unselected package r-cran-rsqlite. 378s Preparing to unpack .../165-r-cran-rsqlite_2.3.4-1_arm64.deb ... 378s Unpacking r-cran-rsqlite (2.3.4-1) ... 378s Selecting previously unselected package r-cran-curl. 378s Preparing to unpack .../166-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 378s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 378s Selecting previously unselected package r-cran-jsonlite. 378s Preparing to unpack .../167-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 378s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 378s Selecting previously unselected package r-cran-mime. 378s Preparing to unpack .../168-r-cran-mime_0.12-1_arm64.deb ... 378s Unpacking r-cran-mime (0.12-1) ... 378s Selecting previously unselected package r-cran-sys. 378s Preparing to unpack .../169-r-cran-sys_3.4.2-1_arm64.deb ... 378s Unpacking r-cran-sys (3.4.2-1) ... 378s Selecting previously unselected package r-cran-askpass. 378s Preparing to unpack .../170-r-cran-askpass_1.2.0-1_arm64.deb ... 378s Unpacking r-cran-askpass (1.2.0-1) ... 378s Selecting previously unselected package r-cran-openssl. 378s Preparing to unpack .../171-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 378s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 378s Selecting previously unselected package r-cran-r6. 378s Preparing to unpack .../172-r-cran-r6_2.5.1-1_all.deb ... 378s Unpacking r-cran-r6 (2.5.1-1) ... 378s Selecting previously unselected package r-cran-httr. 378s Preparing to unpack .../173-r-cran-httr_1.4.7+dfsg-1_all.deb ... 378s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 378s Selecting previously unselected package r-cran-png. 378s Preparing to unpack .../174-r-cran-png_0.1-8-1_arm64.deb ... 378s Unpacking r-cran-png (0.1-8-1) ... 379s Selecting previously unselected package r-bioc-zlibbioc. 379s Preparing to unpack .../175-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 379s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 379s Selecting previously unselected package r-bioc-xvector. 379s Preparing to unpack .../176-r-bioc-xvector_0.42.0-1_arm64.deb ... 379s Unpacking r-bioc-xvector (0.42.0-1) ... 379s Selecting previously unselected package r-cran-bitops. 379s Preparing to unpack .../177-r-cran-bitops_1.0-7-1_arm64.deb ... 379s Unpacking r-cran-bitops (1.0-7-1) ... 379s Selecting previously unselected package r-cran-rcurl. 379s Preparing to unpack .../178-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 379s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 379s Selecting previously unselected package r-bioc-genomeinfodbdata. 379s Preparing to unpack .../179-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 379s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 379s Selecting previously unselected package r-bioc-genomeinfodb. 379s Preparing to unpack .../180-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 379s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 379s Selecting previously unselected package r-cran-crayon. 379s Preparing to unpack .../181-r-cran-crayon_1.5.2-1_all.deb ... 379s Unpacking r-cran-crayon (1.5.2-1) ... 379s Selecting previously unselected package r-bioc-biostrings. 379s Preparing to unpack .../182-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 379s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 379s Selecting previously unselected package r-bioc-keggrest. 379s Preparing to unpack .../183-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 379s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-annotationdbi. 380s Preparing to unpack .../184-r-bioc-annotationdbi_1.64.1-1_all.deb ... 380s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 380s Selecting previously unselected package r-cran-generics. 380s Preparing to unpack .../185-r-cran-generics_0.1.3-1_all.deb ... 380s Unpacking r-cran-generics (0.1.3-1) ... 380s Selecting previously unselected package r-cran-magrittr. 380s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_arm64.deb ... 380s Unpacking r-cran-magrittr (2.0.3-1) ... 380s Selecting previously unselected package r-cran-fansi. 380s Preparing to unpack .../187-r-cran-fansi_1.0.5-1_arm64.deb ... 380s Unpacking r-cran-fansi (1.0.5-1) ... 380s Selecting previously unselected package r-cran-utf8. 380s Preparing to unpack .../188-r-cran-utf8_1.2.4-1_arm64.deb ... 380s Unpacking r-cran-utf8 (1.2.4-1) ... 380s Selecting previously unselected package r-cran-pillar. 380s Preparing to unpack .../189-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 380s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 380s Selecting previously unselected package r-cran-tibble. 380s Preparing to unpack .../190-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 380s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 380s Selecting previously unselected package r-cran-withr. 380s Preparing to unpack .../191-r-cran-withr_2.5.0-1_all.deb ... 380s Unpacking r-cran-withr (2.5.0-1) ... 380s Selecting previously unselected package r-cran-tidyselect. 380s Preparing to unpack .../192-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 380s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 380s Selecting previously unselected package r-cran-dplyr. 381s Preparing to unpack .../193-r-cran-dplyr_1.1.4-1_arm64.deb ... 381s Unpacking r-cran-dplyr (1.1.4-1) ... 381s Selecting previously unselected package r-cran-purrr. 381s Preparing to unpack .../194-r-cran-purrr_1.0.2-1_arm64.deb ... 381s Unpacking r-cran-purrr (1.0.2-1) ... 381s Selecting previously unselected package r-cran-stringi. 381s Preparing to unpack .../195-r-cran-stringi_1.8.3-1_arm64.deb ... 381s Unpacking r-cran-stringi (1.8.3-1) ... 381s Selecting previously unselected package r-cran-stringr. 381s Preparing to unpack .../196-r-cran-stringr_1.5.1-1_all.deb ... 381s Unpacking r-cran-stringr (1.5.1-1) ... 381s Selecting previously unselected package r-cran-tidyr. 381s Preparing to unpack .../197-r-cran-tidyr_1.3.1-1_arm64.deb ... 381s Unpacking r-cran-tidyr (1.3.1-1) ... 381s Selecting previously unselected package r-cran-dbplyr. 381s Preparing to unpack .../198-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 381s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-filelock. 381s Preparing to unpack .../199-r-cran-filelock_1.0.3-1_arm64.deb ... 381s Unpacking r-cran-filelock (1.0.3-1) ... 381s Selecting previously unselected package r-bioc-biocfilecache. 381s Preparing to unpack .../200-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 381s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-biocmanager. 381s Preparing to unpack .../201-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 381s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 381s Selecting previously unselected package r-bioc-biocversion. 381s Preparing to unpack .../202-r-bioc-biocversion_3.18.1-1_all.deb ... 381s Unpacking r-bioc-biocversion (3.18.1-1) ... 381s Selecting previously unselected package r-cran-rappdirs. 382s Preparing to unpack .../203-r-cran-rappdirs_0.3.3-1_arm64.deb ... 382s Unpacking r-cran-rappdirs (0.3.3-1) ... 382s Selecting previously unselected package r-cran-yaml. 382s Preparing to unpack .../204-r-cran-yaml_2.3.8-1_arm64.deb ... 382s Unpacking r-cran-yaml (2.3.8-1) ... 382s Selecting previously unselected package r-cran-littler. 382s Preparing to unpack .../205-r-cran-littler_0.3.19-1_arm64.deb ... 382s Unpacking r-cran-littler (0.3.19-1) ... 382s Selecting previously unselected package r-cran-pkgkitten. 382s Preparing to unpack .../206-r-cran-pkgkitten_0.2.3-1_all.deb ... 382s Unpacking r-cran-pkgkitten (0.2.3-1) ... 382s Selecting previously unselected package r-cran-rcpp. 382s Preparing to unpack .../207-r-cran-rcpp_1.0.12-1_arm64.deb ... 382s Unpacking r-cran-rcpp (1.0.12-1) ... 382s Selecting previously unselected package r-cran-later. 382s Preparing to unpack .../208-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 382s Unpacking r-cran-later (1.3.2+dfsg-1) ... 382s Selecting previously unselected package r-cran-promises. 382s Preparing to unpack .../209-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 382s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 382s Selecting previously unselected package r-cran-httpuv. 382s Preparing to unpack .../210-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 382s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 382s Selecting previously unselected package r-cran-xtable. 382s Preparing to unpack .../211-r-cran-xtable_1%3a1.8-4-2_all.deb ... 382s Unpacking r-cran-xtable (1:1.8-4-2) ... 383s Selecting previously unselected package r-cran-base64enc. 383s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_arm64.deb ... 383s Unpacking r-cran-base64enc (0.1-3-3) ... 383s Selecting previously unselected package r-cran-digest. 383s Preparing to unpack .../213-r-cran-digest_0.6.34-1_arm64.deb ... 383s Unpacking r-cran-digest (0.6.34-1) ... 383s Selecting previously unselected package r-cran-ellipsis. 383s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_arm64.deb ... 383s Unpacking r-cran-ellipsis (0.3.2-2) ... 383s Selecting previously unselected package r-cran-htmltools. 383s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_arm64.deb ... 383s Unpacking r-cran-htmltools (0.5.7-1) ... 383s Selecting previously unselected package r-cran-fontawesome. 383s Preparing to unpack .../216-r-cran-fontawesome_0.5.2-1_all.deb ... 383s Unpacking r-cran-fontawesome (0.5.2-1) ... 383s Selecting previously unselected package r-cran-sourcetools. 383s Preparing to unpack .../217-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 383s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 383s Selecting previously unselected package r-cran-commonmark. 383s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_arm64.deb ... 383s Unpacking r-cran-commonmark (1.9.1-1) ... 383s Selecting previously unselected package r-cran-jquerylib. 383s Preparing to unpack .../219-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 383s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 383s Selecting previously unselected package r-cran-fs. 383s Preparing to unpack .../220-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 383s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 383s Selecting previously unselected package r-cran-sass. 383s Preparing to unpack .../221-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 383s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 384s Selecting previously unselected package r-cran-bslib. 384s Preparing to unpack .../222-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 384s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 384s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 384s Preparing to unpack .../223-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 384s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 384s Selecting previously unselected package r-cran-shiny. 384s Preparing to unpack .../224-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 384s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 384s Selecting previously unselected package r-cran-evaluate. 384s Preparing to unpack .../225-r-cran-evaluate_0.23-1_all.deb ... 384s Unpacking r-cran-evaluate (0.23-1) ... 384s Selecting previously unselected package r-cran-xfun. 384s Preparing to unpack .../226-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 384s Unpacking r-cran-xfun (0.41+dfsg-1) ... 384s Selecting previously unselected package r-cran-highr. 384s Preparing to unpack .../227-r-cran-highr_0.10+dfsg-1_all.deb ... 384s Unpacking r-cran-highr (0.10+dfsg-1) ... 384s Selecting previously unselected package libjs-mathjax. 384s Preparing to unpack .../228-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 384s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 386s Selecting previously unselected package r-cran-knitr. 386s Preparing to unpack .../229-r-cran-knitr_1.45+dfsg-1_all.deb ... 386s Unpacking r-cran-knitr (1.45+dfsg-1) ... 386s Selecting previously unselected package r-cran-tinytex. 386s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 386s Unpacking r-cran-tinytex (0.49-1) ... 386s Selecting previously unselected package libjs-modernizr. 386s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 386s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 386s Selecting previously unselected package r-cran-rmarkdown. 386s Preparing to unpack .../232-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 386s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 387s Selecting previously unselected package r-cran-htmlwidgets. 387s Preparing to unpack .../233-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 387s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 387s Selecting previously unselected package r-cran-lazyeval. 387s Preparing to unpack .../234-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 387s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 387s Selecting previously unselected package r-cran-crosstalk. 387s Preparing to unpack .../235-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 387s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 387s Selecting previously unselected package r-cran-dt. 387s Preparing to unpack .../236-r-cran-dt_0.31+dfsg-1_all.deb ... 387s Unpacking r-cran-dt (0.31+dfsg-1) ... 387s Selecting previously unselected package r-bioc-interactivedisplaybase. 387s Preparing to unpack .../237-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 387s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-annotationhub. 387s Preparing to unpack .../238-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 387s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-biocio. 387s Preparing to unpack .../239-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 387s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 387s Selecting previously unselected package r-cran-formatr. 387s Preparing to unpack .../240-r-cran-formatr_1.14-1_all.deb ... 387s Unpacking r-cran-formatr (1.14-1) ... 387s Selecting previously unselected package r-cran-lambda.r. 387s Preparing to unpack .../241-r-cran-lambda.r_1.2.4-2build1_all.deb ... 387s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 387s Selecting previously unselected package r-cran-futile.options. 387s Preparing to unpack .../242-r-cran-futile.options_1.0.1-3build1_all.deb ... 387s Unpacking r-cran-futile.options (1.0.1-3build1) ... 387s Selecting previously unselected package r-cran-futile.logger. 388s Preparing to unpack .../243-r-cran-futile.logger_1.4.3-4build1_all.deb ... 388s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 388s Selecting previously unselected package r-cran-snow. 388s Preparing to unpack .../244-r-cran-snow_1%3a0.4.4-2_all.deb ... 388s Unpacking r-cran-snow (1:0.4.4-2) ... 388s Selecting previously unselected package r-cran-codetools. 388s Preparing to unpack .../245-r-cran-codetools_0.2-19-1_all.deb ... 388s Unpacking r-cran-codetools (0.2-19-1) ... 388s Selecting previously unselected package r-cran-bh. 388s Preparing to unpack .../246-r-cran-bh_1.84.0-1_all.deb ... 388s Unpacking r-cran-bh (1.84.0-1) ... 388s Selecting previously unselected package r-bioc-biocparallel. 388s Preparing to unpack .../247-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 388s Unpacking r-bioc-biocparallel (1.36.0-1) ... 388s Selecting previously unselected package r-cran-bookdown. 388s Preparing to unpack .../248-r-cran-bookdown_0.37+dfsg-1_all.deb ... 388s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 388s Selecting previously unselected package tex-common. 388s Preparing to unpack .../249-tex-common_6.18_all.deb ... 388s Unpacking tex-common (6.18) ... 388s Selecting previously unselected package t1utils. 388s Preparing to unpack .../250-t1utils_1.41-4build2_arm64.deb ... 388s Unpacking t1utils (1.41-4build2) ... 388s Selecting previously unselected package texlive-binaries. 388s Preparing to unpack .../251-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 388s Unpacking texlive-binaries (2023.20230311.66589-9) ... 389s Selecting previously unselected package texlive-base. 389s Preparing to unpack .../252-texlive-base_2023.20240207-1_all.deb ... 389s Unpacking texlive-base (2023.20240207-1) ... 391s Selecting previously unselected package texlive-latex-base. 391s Preparing to unpack .../253-texlive-latex-base_2023.20240207-1_all.deb ... 391s Unpacking texlive-latex-base (2023.20240207-1) ... 392s Selecting previously unselected package texlive-bibtex-extra. 392s Preparing to unpack .../254-texlive-bibtex-extra_2023.20240207-1_all.deb ... 392s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 395s Selecting previously unselected package r-bioc-biocstyle. 395s Preparing to unpack .../255-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 395s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-xml. 395s Preparing to unpack .../256-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 395s Unpacking r-cran-xml (3.99-0.16.1-1) ... 395s Selecting previously unselected package r-cran-hms. 395s Preparing to unpack .../257-r-cran-hms_1.1.3-1_all.deb ... 395s Unpacking r-cran-hms (1.1.3-1) ... 395s Selecting previously unselected package r-cran-prettyunits. 395s Preparing to unpack .../258-r-cran-prettyunits_1.2.0-1_all.deb ... 395s Unpacking r-cran-prettyunits (1.2.0-1) ... 395s Selecting previously unselected package r-cran-progress. 395s Preparing to unpack .../259-r-cran-progress_1.2.3-1_all.deb ... 395s Unpacking r-cran-progress (1.2.3-1) ... 395s Selecting previously unselected package r-cran-xml2. 395s Preparing to unpack .../260-r-cran-xml2_1.3.6-1_arm64.deb ... 395s Unpacking r-cran-xml2 (1.3.6-1) ... 395s Selecting previously unselected package r-bioc-biomart. 395s Preparing to unpack .../261-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 395s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 395s Selecting previously unselected package r-bioc-genomicranges. 395s Preparing to unpack .../262-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 395s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 395s Selecting previously unselected package r-bioc-rhtslib. 396s Preparing to unpack .../263-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 396s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 396s Selecting previously unselected package r-bioc-rsamtools. 396s Preparing to unpack .../264-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 396s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 396s Selecting previously unselected package r-cran-matrixstats. 396s Preparing to unpack .../265-r-cran-matrixstats_1.2.0-1_arm64.deb ... 396s Unpacking r-cran-matrixstats (1.2.0-1) ... 396s Selecting previously unselected package r-bioc-matrixgenerics. 396s Preparing to unpack .../266-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 396s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 396s Selecting previously unselected package r-cran-lattice. 396s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_arm64.deb ... 396s Unpacking r-cran-lattice (0.22-5-1) ... 396s Selecting previously unselected package r-cran-matrix. 396s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_arm64.deb ... 396s Unpacking r-cran-matrix (1.6-5-1) ... 396s Selecting previously unselected package r-cran-abind. 396s Preparing to unpack .../269-r-cran-abind_1.4-5-2_all.deb ... 396s Unpacking r-cran-abind (1.4-5-2) ... 396s Selecting previously unselected package r-bioc-s4arrays. 396s Preparing to unpack .../270-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 396s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 397s Selecting previously unselected package r-bioc-sparsearray. 397s Preparing to unpack .../271-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 397s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 397s Selecting previously unselected package r-bioc-delayedarray. 397s Preparing to unpack .../272-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 397s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 397s Selecting previously unselected package r-bioc-summarizedexperiment. 397s Preparing to unpack .../273-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 397s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 397s Selecting previously unselected package r-bioc-genomicalignments. 397s Preparing to unpack .../274-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 397s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 397s Selecting previously unselected package r-cran-rjson. 397s Preparing to unpack .../275-r-cran-rjson_0.2.21-1_arm64.deb ... 397s Unpacking r-cran-rjson (0.2.21-1) ... 397s Selecting previously unselected package r-cran-restfulr. 397s Preparing to unpack .../276-r-cran-restfulr_0.0.15-1_arm64.deb ... 397s Unpacking r-cran-restfulr (0.0.15-1) ... 397s Selecting previously unselected package r-bioc-rtracklayer. 397s Preparing to unpack .../277-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 397s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 397s Selecting previously unselected package r-bioc-bsgenome. 397s Preparing to unpack .../278-r-bioc-bsgenome_1.70.2-1_all.deb ... 397s Unpacking r-bioc-bsgenome (1.70.2-1) ... 398s Selecting previously unselected package r-bioc-genomicfeatures. 398s Preparing to unpack .../279-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 398s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 398s Selecting previously unselected package r-cran-survival. 398s Preparing to unpack .../280-r-cran-survival_3.5-8-1_arm64.deb ... 398s Unpacking r-cran-survival (3.5-8-1) ... 398s Selecting previously unselected package r-bioc-snpstats. 398s Preparing to unpack .../281-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 398s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 398s Selecting previously unselected package r-bioc-variantannotation. 398s Preparing to unpack .../282-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 398s Unpacking r-bioc-variantannotation (1.48.1-1) ... 398s Selecting previously unselected package r-cran-colorspace. 398s Preparing to unpack .../283-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 398s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 398s Selecting previously unselected package r-cran-farver. 398s Preparing to unpack .../284-r-cran-farver_2.1.1-1_arm64.deb ... 398s Unpacking r-cran-farver (2.1.1-1) ... 398s Selecting previously unselected package r-cran-gtable. 398s Preparing to unpack .../285-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 398s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 398s Selecting previously unselected package r-cran-isoband. 399s 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Setting up r-cran-pkgconfig (2.0.3-2build1) ... 411s Setting up r-cran-utf8 (1.2.4-1) ... 411s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 411s Setting up r-cran-stringi (1.8.3-1) ... 411s Setting up texlive-latex-base (2023.20240207-1) ... 411s Setting up r-cran-cpp11 (0.4.7-1) ... 411s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 411s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 411s Setting up r-cran-isoband (0.2.7-1) ... 411s Setting up r-cran-runit (0.4.33-1) ... 411s Setting up r-cran-futile.logger (1.4.3-4build1) ... 411s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 411s Setting up r-cran-later (1.3.2+dfsg-1) ... 411s Setting up r-cran-matrix (1.6-5-1) ... 411s Setting up r-cran-tinytex (0.49-1) ... 411s Setting up r-cran-knitr (1.45+dfsg-1) ... 411s Setting up r-cran-mgcv (1.9-1-1) ... 411s Setting up g++ (4:13.2.0-7ubuntu1) ... 411s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 411s Setting up r-cran-cachem (1.0.8-1) ... 411s Setting up build-essential (12.10ubuntu1) ... 411s Setting up r-bioc-iranges (2.36.0-1) ... 411s Setting up r-cran-rjson (0.2.21-1) ... 411s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 411s Setting up r-cran-restfulr (0.0.15-1) ... 411s Setting up r-cran-vctrs (0.6.5-1) ... 411s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 411s Setting up r-cran-ellipsis (0.3.2-2) ... 411s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 411s Setting up r-base-dev (4.3.2-1build1) ... 411s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 411s Setting up r-cran-stringr (1.5.1-1) ... 411s Setting up r-bioc-biocparallel (1.36.0-1) ... 411s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 411s Setting up r-cran-xml2 (1.3.6-1) ... 411s Setting up r-cran-munsell (0.5.0-2build1) ... 411s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 411s Setting up r-cran-survival (3.5-8-1) ... 411s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 411s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 411s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 411s Setting up texlive-bibtex-extra (2023.20240207-1) ... 411s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 411s Setting up r-cran-httr (1.4.7+dfsg-1) ... 411s Setting up r-cran-hms (1.1.3-1) ... 411s Setting up r-cran-scales (1.3.0-1) ... 411s Setting up r-cran-memoise (2.0.1-1) ... 411s Setting up r-cran-promises (1.2.1+dfsg-1) ... 411s Setting up r-cran-purrr (1.0.2-1) ... 411s Setting up r-cran-blob (1.2.4-1) ... 411s Setting up r-cran-htmltools (0.5.7-1) ... 411s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 411s Setting up r-bioc-xvector (0.42.0-1) ... 411s Setting up r-cran-sass (0.4.8+dfsg-1) ... 411s Setting up r-cran-dplyr (1.1.4-1) ... 411s Setting up r-cran-rsqlite (2.3.4-1) ... 411s Setting up r-cran-progress (1.2.3-1) ... 411s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 411s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 411s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 411s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 411s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 411s Setting up r-cran-fontawesome (0.5.2-1) ... 411s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 411s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 411s Setting up r-cran-tidyr (1.3.1-1) ... 411s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 411s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 411s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 411s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 411s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 411s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 411s Setting up r-bioc-annotationdbi (1.64.1-1) ... 411s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 411s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 411s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 411s Setting up r-bioc-genomicalignments (1.38.2-1) ... 411s Setting up r-cran-bookdown (0.37+dfsg-1) ... 411s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 411s Setting up r-bioc-rtracklayer (1.62.0-1) ... 411s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 411s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 411s Setting up r-bioc-bsgenome (1.70.2-1) ... 411s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 411s Setting up r-cran-dt (0.31+dfsg-1) ... 411s Setting up r-bioc-variantannotation (1.48.1-1) ... 411s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 411s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 411s Setting up autopkgtest-satdep (0) ... 411s Processing triggers for man-db (2.12.0-3) ... 413s Processing triggers for install-info (7.1-3) ... 413s Processing triggers for libc-bin (2.39-0ubuntu6) ... 413s Processing triggers for tex-common (6.18) ... 414s Running updmap-sys. This may take some time... done. 414s Running mktexlsr /var/lib/texmf ... done. 414s Building format(s) --all. 495s This may take some time... done. 519s (Reading database ... 126957 files and directories currently installed.) 520s Removing autopkgtest-satdep (0) ... 520s autopkgtest [10:20:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 520s autopkgtest [10:20:09]: test pkg-r-autopkgtest: [----------------------- 521s Test: Try to load the R library VariantAnnotation 521s 521s R version 4.3.2 (2023-10-31) -- "Eye Holes" 521s Copyright (C) 2023 The R Foundation for Statistical Computing 521s Platform: aarch64-unknown-linux-gnu (64-bit) 521s 521s R is free software and comes with ABSOLUTELY NO WARRANTY. 521s You are welcome to redistribute it under certain conditions. 521s Type 'license()' or 'licence()' for distribution details. 521s 521s R is a collaborative project with many contributors. 521s Type 'contributors()' for more information and 521s 'citation()' on how to cite R or R packages in publications. 521s 521s Type 'demo()' for some demos, 'help()' for on-line help, or 521s 'help.start()' for an HTML browser interface to help. 521s Type 'q()' to quit R. 521s 521s > library('VariantAnnotation') 521s Loading required package: BiocGenerics 521s 521s Attaching package: ‘BiocGenerics’ 521s 521s The following objects are masked from ‘package:stats’: 521s 521s IQR, mad, sd, var, xtabs 521s 521s The following objects are masked from ‘package:base’: 521s 521s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 521s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 521s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 521s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 521s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 521s table, tapply, union, unique, unsplit, which.max, which.min 521s 521s Loading required package: MatrixGenerics 521s Loading required package: matrixStats 522s 522s Attaching package: ‘MatrixGenerics’ 522s 522s The following objects are masked from ‘package:matrixStats’: 522s 522s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 522s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 522s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 522s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 522s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 522s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 522s colWeightedMeans, colWeightedMedians, colWeightedSds, 522s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 522s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 522s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 522s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 522s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 522s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 522s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 522s rowWeightedSds, rowWeightedVars 522s 522s Loading required package: GenomeInfoDb 522s Loading required package: S4Vectors 522s Loading required package: stats4 523s 523s Attaching package: ‘S4Vectors’ 523s 523s The following object is masked from ‘package:utils’: 523s 523s findMatches 523s 523s The following objects are masked from ‘package:base’: 523s 523s expand.grid, I, unname 523s 523s Loading required package: IRanges 526s Loading required package: GenomicRanges 527s Loading required package: SummarizedExperiment 527s Loading required package: Biobase 528s Welcome to Bioconductor 528s 528s Vignettes contain introductory material; view with 528s 'browseVignettes()'. To cite Bioconductor, see 528s 'citation("Biobase")', and for packages 'citation("pkgname")'. 528s 528s 528s Attaching package: ‘Biobase’ 528s 528s The following object is masked from ‘package:MatrixGenerics’: 528s 528s rowMedians 528s 528s The following objects are masked from ‘package:matrixStats’: 528s 528s anyMissing, rowMedians 528s 535s Loading required package: Rsamtools 535s Loading required package: Biostrings 535s Loading required package: XVector 536s 536s Attaching package: ‘Biostrings’ 536s 536s The following object is masked from ‘package:base’: 536s 536s strsplit 536s 551s 551s Attaching package: ‘VariantAnnotation’ 551s 551s The following object is masked from ‘package:base’: 551s 551s tabulate 551s 551s > 551s > 551s Other tests are currently unsupported! 551s They will be progressively added. 551s autopkgtest [10:20:40]: test pkg-r-autopkgtest: -----------------------] 552s autopkgtest [10:20:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 552s pkg-r-autopkgtest PASS 552s autopkgtest [10:20:41]: @@@@@@@@@@@@@@@@@@@@ summary 552s pkg-r-autopkgtest PASS 567s Creating nova instance adt-noble-arm64-r-bioc-variantannotation-20240325-101129-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...