0s autopkgtest [17:47:06]: starting date and time: 2024-03-16 17:47:06+0000 0s autopkgtest [17:47:06]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:47:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5aq22mn0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-4.secgroup --name adt-noble-arm64-r-bioc-variantannotation-20240316-174706-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 147s autopkgtest [17:49:33]: testbed dpkg architecture: arm64 147s autopkgtest [17:49:33]: testbed apt version: 2.7.12 147s autopkgtest [17:49:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 148s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 148s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 149s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 149s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 149s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 149s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 150s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 150s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 150s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 150s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 150s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 150s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 150s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 151s Fetched 9060 kB in 3s (3038 kB/s) 152s Reading package lists... 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s Calculating upgrade... 155s The following packages will be REMOVED: 155s libglib2.0-0 libssl3 155s The following NEW packages will be installed: 155s libglib2.0-0t64 libssl3t64 xdg-user-dirs 155s The following packages have been kept back: 155s curl 155s The following packages will be upgraded: 155s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 155s ubuntu-minimal ubuntu-standard 156s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 156s Need to get 4613 kB of archives. 156s After this operation, 211 kB of additional disk space will be used. 156s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 156s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 156s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 156s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 156s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 156s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 156s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 156s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 156s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 156s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 157s Fetched 4613 kB in 1s (6458 kB/s) 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 157s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 157s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 157s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 157s udisks2 depends on libglib2.0-0 (>= 2.77.0). 157s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 157s python3-gi depends on libglib2.0-0 (>= 2.77.0). 157s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 157s netplan.io depends on libglib2.0-0 (>= 2.70.0). 157s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 157s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 157s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 157s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 157s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 157s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 157s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 157s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 157s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 157s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 157s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 157s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 157s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 157s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 157s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 157s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 157s fwupd depends on libglib2.0-0 (>= 2.79.0). 157s bolt depends on libglib2.0-0 (>= 2.56.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 157s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 157s Selecting previously unselected package libglib2.0-0t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 157s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 157s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 157s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 157s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 157s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 157s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 157s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 157s wget depends on libssl3 (>= 3.0.0). 157s u-boot-tools depends on libssl3 (>= 3.0.0). 157s tnftp depends on libssl3 (>= 3.0.0). 157s tcpdump depends on libssl3 (>= 3.0.0). 157s systemd-resolved depends on libssl3 (>= 3.0.0). 157s systemd depends on libssl3 (>= 3.0.0). 157s sudo depends on libssl3 (>= 3.0.0). 157s sbsigntool depends on libssl3 (>= 3.0.0). 157s rsync depends on libssl3 (>= 3.0.0). 157s python3-cryptography depends on libssl3 (>= 3.0.0). 157s openssh-server depends on libssl3 (>= 3.0.10). 157s openssh-client depends on libssl3 (>= 3.0.10). 157s mtd-utils depends on libssl3 (>= 3.0.0). 157s mokutil depends on libssl3 (>= 3.0.0). 157s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 157s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 157s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 157s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 157s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 157s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 157s libnvme1 depends on libssl3 (>= 3.0.0). 157s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 157s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 157s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 157s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 157s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 157s kmod depends on libssl3 (>= 3.0.0). 157s dhcpcd-base depends on libssl3 (>= 3.0.0). 157s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 157s 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 157s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 157s Selecting previously unselected package libssl3t64:arm64. 157s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 157s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 157s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 158s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 158s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 158s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 158s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 158s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 158s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 158s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 158s Unpacking ubuntu-minimal (1.536) over (1.535) ... 158s Selecting previously unselected package xdg-user-dirs. 158s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 158s Unpacking xdg-user-dirs (0.18-1) ... 158s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 158s Unpacking ubuntu-standard (1.536) over (1.535) ... 158s Setting up ubuntu-minimal (1.536) ... 158s Setting up xdg-user-dirs (0.18-1) ... 158s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 158s Setting up libtirpc-common (1.3.4+ds-1.1) ... 158s Setting up ubuntu-standard (1.536) ... 158s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 158s No schema files found: doing nothing. 158s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 158s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 158s Setting up openssl (3.0.13-0ubuntu1) ... 158s Setting up readline-common (8.2-3.1) ... 158s Processing triggers for man-db (2.12.0-3) ... 159s Processing triggers for install-info (7.1-3) ... 159s Processing triggers for libc-bin (2.39-0ubuntu2) ... 159s Reading package lists... 159s Building dependency tree... 159s Reading state information... 160s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 160s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 160s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 161s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 161s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 162s Reading package lists... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s Calculating upgrade... 163s The following packages have been kept back: 163s curl 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 163s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 167s autopkgtest [17:49:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 167s autopkgtest [17:49:53]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 170s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 170s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 170s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 170s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 170s gpgv: issuer "tillea@rki.de" 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 170s autopkgtest [17:49:56]: testing package r-bioc-variantannotation version 1.48.1-1 171s autopkgtest [17:49:57]: build not needed 172s autopkgtest [17:49:58]: test pkg-r-autopkgtest: preparing testbed 173s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s The following additional packages will be installed: 175s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 175s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 175s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 175s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 175s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 175s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 175s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 175s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 175s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 175s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 175s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 175s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 175s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 175s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 175s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 175s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 175s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 175s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 175s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 175s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 175s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 175s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 175s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 175s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 175s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 175s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 175s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 175s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 175s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 175s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 175s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 175s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 175s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 175s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 175s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 175s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 175s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 175s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 175s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 175s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 175s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 175s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 175s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 175s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 175s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 175s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 175s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 175s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 175s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 175s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 175s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 175s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 175s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 175s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 175s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 175s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 175s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 175s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 175s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 175s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 175s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 175s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 175s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 175s x11-common xdg-utils zip zlib1g-dev 175s Suggested packages: 175s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 175s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 175s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 175s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 175s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 175s libboost-context1.83-dev libboost-contract1.83-dev 175s libboost-coroutine1.83-dev libboost-date-time1.83-dev 175s libboost-exception1.83-dev libboost-fiber1.83-dev 175s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 175s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 175s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 175s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 175s libboost-numpy1.83-dev libboost-program-options1.83-dev 175s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 175s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 175s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 175s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 175s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 175s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 175s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 175s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 175s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 175s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 175s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 175s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 175s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 175s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 175s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 175s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 175s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 175s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 175s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 175s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 175s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 175s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 175s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 175s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 175s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 175s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 175s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 175s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 175s hintview texlive-latex-base-doc wp2latex 175s Recommended packages: 175s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 175s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 175s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 175s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 175s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 175s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 175s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 175s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 175s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 175s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 175s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 175s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 175s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 175s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 175s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 175s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 175s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 175s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 175s x11-xserver-utils 175s The following packages will be REMOVED: 175s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 175s The following NEW packages will be installed: 175s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 175s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 175s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 175s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 175s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 175s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 175s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 175s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 175s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 175s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 175s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 175s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 175s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 175s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 175s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 175s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 175s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 175s libjs-popper.js libjs-prettify libjs-sifter.js 175s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 175s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 175s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 175s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 175s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 175s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 175s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 175s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 175s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 175s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 175s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 175s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 175s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-annotationhub 175s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 175s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 175s r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 175s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 175s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 175s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 175s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 175s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 175s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 175s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 175s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 175s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 175s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 175s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 175s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 175s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 175s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 175s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 175s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 175s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 175s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 175s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 175s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 175s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 175s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 175s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 175s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 175s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 175s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 175s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 175s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 175s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 175s x11-common xdg-utils zip zlib1g-dev 175s The following packages will be upgraded: 175s curl 175s 1 upgraded, 305 newly installed, 5 to remove and 0 not upgraded. 175s Need to get 458 MB/458 MB of archives. 175s After this operation, 1394 MB of additional disk space will be used. 175s Get:1 /tmp/autopkgtest.cESz0t/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 175s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 176s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 176s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 176s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 176s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 176s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 176s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 176s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 176s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 176s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 176s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 176s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 176s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 176s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 176s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 176s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 176s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 176s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 176s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 176s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 176s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 176s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 176s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 176s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 176s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 176s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 176s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 176s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 177s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 177s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 177s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 177s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 177s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 177s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 177s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 177s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 177s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 177s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 177s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 177s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 177s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 177s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 177s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 177s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 177s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 177s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 177s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 177s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 177s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 177s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 178s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 178s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 178s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 178s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 178s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 178s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 178s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 178s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 178s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 178s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 178s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 178s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 178s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 178s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 178s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 178s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 178s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 178s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 178s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 178s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 179s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 179s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 179s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 179s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 179s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 179s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 179s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 179s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 179s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 179s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 179s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 179s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 179s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 179s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 179s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 179s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 179s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 179s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 179s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 179s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 179s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 179s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 179s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 179s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 179s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 179s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 179s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 179s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 179s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 179s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 180s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 180s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 180s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 180s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 180s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 180s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 180s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 180s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 180s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 180s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 180s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 180s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 180s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 180s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 180s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 180s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 180s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 180s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 180s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 180s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 180s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 180s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 180s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 180s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 180s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 180s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 180s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 180s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 180s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 180s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 180s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 180s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 180s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 180s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 180s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 180s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 180s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 180s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 180s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 180s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 180s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 180s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 181s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 181s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 181s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 181s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 181s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 181s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 181s Get:152 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 181s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 181s Get:154 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 181s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 181s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 181s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 181s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 181s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 181s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 182s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 182s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 182s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 182s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 182s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 182s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 182s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 182s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 182s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 182s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 182s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 182s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 182s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 182s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 182s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 182s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 182s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 182s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 182s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 182s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 182s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 182s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 182s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 182s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 182s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 182s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 182s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 182s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 182s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 182s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 182s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 182s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 183s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 183s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 183s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 183s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 183s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 183s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 183s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 183s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 183s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 183s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 183s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 183s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 183s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 183s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 183s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 183s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 184s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 184s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 184s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 184s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 184s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 184s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 184s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 184s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 184s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 184s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 184s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 184s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 184s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 184s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 184s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 184s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 184s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 184s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 184s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 184s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 184s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 184s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 184s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 184s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 184s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 184s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 184s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 184s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 184s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 184s Get:238 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 184s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 184s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 184s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 184s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 184s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 184s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 184s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 184s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 184s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 184s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 184s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 184s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 184s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 184s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 184s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 184s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 184s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 184s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 184s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 184s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 185s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 185s Get:260 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 185s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 185s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 186s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 186s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 188s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 188s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 189s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 189s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 189s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 189s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 189s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 189s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 189s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 189s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 189s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 189s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 189s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 189s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 189s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 189s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 189s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 189s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 189s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 189s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 189s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 189s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 189s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 189s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 190s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 190s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 190s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 190s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 190s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 190s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 190s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 190s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 190s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 190s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 191s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 191s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 191s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 191s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 191s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 191s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 191s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 191s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 193s Preconfiguring packages ... 194s Fetched 458 MB in 17s (27.6 MB/s) 194s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 194s wget depends on libpsl5 (>= 0.16.0). 194s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 194s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 194s Removing libpsl5:arm64 (0.21.2-1build1) ... 194s Selecting previously unselected package libpsl5t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 194s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 194s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 194s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 194s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 194s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 194s Selecting previously unselected package libcurl4t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 194s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 194s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 194s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 194s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 194s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 194s Removing libpng16-16:arm64 (1.6.43-1) ... 194s Selecting previously unselected package libpng16-16t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 194s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 194s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 194s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 194s parted depends on libreadline8 (>= 6.0). 194s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 194s gpgsm depends on libreadline8 (>= 6.0). 194s gpgconf depends on libreadline8 (>= 6.0). 194s gpg depends on libreadline8 (>= 6.0). 194s gawk depends on libreadline8 (>= 6.0). 194s fdisk depends on libreadline8 (>= 6.0). 194s 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 194s Removing libreadline8:arm64 (8.2-3) ... 194s Selecting previously unselected package libreadline8t64:arm64. 194s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 194s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 195s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 195s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 195s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 195s lsof depends on libtirpc3 (>= 1.0.2). 195s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 195s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 195s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 195s iproute2 depends on libtirpc3 (>= 1.0.2). 195s 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 195s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 195s Selecting previously unselected package libtirpc3t64:arm64. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 195s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 195s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 195s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 195s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 195s Selecting previously unselected package libc-dev-bin. 195s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 195s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 195s Selecting previously unselected package linux-libc-dev:arm64. 195s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 195s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 195s Selecting previously unselected package libcrypt-dev:arm64. 195s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 195s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 195s Selecting previously unselected package libtirpc-dev:arm64. 195s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 195s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 195s Selecting previously unselected package libnsl-dev:arm64. 195s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 195s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 195s Selecting previously unselected package rpcsvc-proto. 196s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 196s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 196s Selecting previously unselected package libc6-dev:arm64. 196s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 196s Selecting previously unselected package libisl23:arm64. 196s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 196s Unpacking libisl23:arm64 (0.26-3) ... 196s Selecting previously unselected package libmpc3:arm64. 196s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 196s Unpacking libmpc3:arm64 (1.3.1-1) ... 196s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 196s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-13. 196s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package cpp-aarch64-linux-gnu. 196s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package cpp. 196s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 196s Unpacking cpp (4:13.2.0-7ubuntu1) ... 196s Selecting previously unselected package libcc1-0:arm64. 196s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgomp1:arm64. 196s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libitm1:arm64. 196s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libatomic1:arm64. 197s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libasan8:arm64. 197s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package liblsan0:arm64. 197s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libtsan2:arm64. 197s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libubsan1:arm64. 197s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libhwasan0:arm64. 197s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgcc-13-dev:arm64. 197s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 197s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package gcc-13. 198s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-aarch64-linux-gnu. 198s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package gcc. 198s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking gcc (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package libstdc++-13-dev:arm64. 198s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package g++-13-aarch64-linux-gnu. 198s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package g++-13. 198s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking g++-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package g++-aarch64-linux-gnu. 198s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package g++. 198s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking g++ (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package build-essential. 198s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 198s Unpacking build-essential (12.10ubuntu1) ... 198s Selecting previously unselected package dctrl-tools. 198s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 198s Unpacking dctrl-tools (2.24-3build2) ... 198s Selecting previously unselected package fonts-dejavu-mono. 198s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 198s Unpacking fonts-dejavu-mono (2.37-8) ... 198s Selecting previously unselected package fonts-dejavu-core. 199s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-core (2.37-8) ... 199s Selecting previously unselected package fontconfig-config. 199s Preparing to unpack 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fonts-lmodern. 199s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 199s Unpacking fonts-lmodern (2.005-1) ... 199s Selecting previously unselected package fonts-mathjax. 199s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 199s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 200s Selecting previously unselected package libgfortran5:arm64. 200s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 200s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 200s Selecting previously unselected package libgfortran-13-dev:arm64. 200s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 200s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13. 200s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-aarch64-linux-gnu. 200s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package gfortran. 200s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package icu-devtools. 200s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 200s Unpacking icu-devtools (74.2-1ubuntu1) ... 200s Selecting previously unselected package javascript-common. 200s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 200s Unpacking javascript-common (11+nmu1) ... 200s Selecting previously unselected package libio-string-perl. 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libharfbuzz0b:arm64. 203s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 203s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 203s Selecting previously unselected package x11-common. 203s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 203s Unpacking x11-common (1:7.7+23ubuntu2) ... 203s Selecting previously unselected package libice6:arm64. 203s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 203s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 203s Selecting previously unselected package libicu-dev:arm64. 203s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 203s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8:arm64. 203s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 203s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 203s Preparing to unpack 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package libjs-jquery-datatables. 204s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 204s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 205s Selecting previously unselected package libjs-jquery-datatables-extensions. 205s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 205s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 205s Selecting previously unselected package libjs-sifter.js. 205s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 205s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 205s Selecting previously unselected package libjs-microplugin.js. 205s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 205s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 205s Selecting previously unselected package libjs-jquery-selectize.js. 205s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb 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(2023.20230311.66589-9) ... 205s Selecting previously unselected package liblapack3:arm64. 205s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 205s Unpacking liblapack3:arm64 (3.12.0-3) ... 205s Selecting previously unselected package liblapack-dev:arm64. 205s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 205s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 205s Selecting previously unselected package liblerc4:arm64. 206s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 206s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 206s Selecting previously unselected package liblua5.4-0:arm64. 206s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 206s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 206s Selecting previously unselected package libncurses-dev:arm64. 206s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 206s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 206s Selecting previously unselected package libthai-data. 206s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 206s Unpacking libthai-data (0.1.29-2) ... 206s Selecting previously unselected package libthai0:arm64. 206s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 206s Unpacking libthai0:arm64 (0.1.29-2) ... 206s Selecting previously unselected package libpango-1.0-0:arm64. 206s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangoft2-1.0-0:arm64. 206s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangocairo-1.0-0:arm64. 206s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpaper1:arm64. 206s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 206s Unpacking libpaper1:arm64 (1.1.29) ... 206s Selecting previously unselected package libpaper-utils. 206s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 206s Unpacking libpaper-utils (1.1.29) ... 206s Selecting previously unselected package libpcre2-16-0:arm64. 206s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-32-0:arm64. 206s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-posix3:arm64. 206s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-dev:arm64. 206s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpkgconf3:arm64. 206s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 206s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 206s Selecting previously unselected package zlib1g-dev:arm64. 206s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 206s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 206s Selecting previously unselected package libpng-dev:arm64. 206s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 206s Unpacking libpng-dev:arm64 (1.6.43-3) ... 206s Selecting previously unselected package libpotrace0:arm64. 206s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 206s Unpacking libpotrace0:arm64 (1.16-2) ... 206s Selecting previously unselected package libptexenc1:arm64. 206s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 206s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libreadline-dev:arm64. 207s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 207s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 207s Selecting previously unselected package libsharpyuv0:arm64. 207s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 207s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libsm6:arm64. 207s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 207s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 207s Selecting previously unselected package libsynctex2:arm64. 207s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libtcl8.6:arm64. 207s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 207s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 207s Selecting previously unselected package libteckit0:arm64. 207s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 207s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 207s Selecting previously unselected package libtexlua53-5:arm64. 207s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libjbig0:arm64. 207s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 207s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 207s Selecting previously unselected package libwebp7:arm64. 207s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 207s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libtiff6:arm64. 207s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 207s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 207s Selecting previously unselected package libxft2:arm64. 207s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 207s Unpacking libxft2:arm64 (2.3.6-1) ... 207s Selecting previously unselected package libxss1:arm64. 207s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 207s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 207s Selecting previously unselected package libtk8.6:arm64. 207s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 207s Unpacking libtk8.6:arm64 (8.6.13-2) ... 207s Selecting previously unselected package libxt6t64:arm64. 207s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 207s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 207s Selecting previously unselected package libxmu6:arm64. 207s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 207s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 207s Selecting previously unselected package libxpm4:arm64. 207s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 207s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 207s Selecting previously unselected package libxaw7:arm64. 207s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 207s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 207s Selecting previously unselected package libxi6:arm64. 207s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 207s Unpacking libxi6:arm64 (2:1.8.1-1) ... 207s Selecting previously unselected package libzzip-0-13:arm64. 207s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 207s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 207s Selecting previously unselected package node-bootstrap-sass. 207s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 207s Unpacking node-bootstrap-sass (3.4.3-2) ... 208s Selecting previously unselected package node-html5shiv. 208s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 208s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 208s Selecting previously unselected package node-normalize.css. 208s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 208s Unpacking node-normalize.css (8.0.1-5) ... 208s Selecting previously unselected package pandoc-data. 208s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 208s Unpacking pandoc-data (3.1.3-1) ... 208s Selecting previously unselected package pandoc. 208s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 208s Unpacking pandoc (3.1.3+ds-2) ... 209s Selecting previously unselected package pkgconf-bin. 209s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 209s Unpacking pkgconf-bin (1.8.1-2) ... 209s Selecting previously unselected package pkgconf:arm64. 209s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 209s Unpacking pkgconf:arm64 (1.8.1-2) ... 209s Selecting previously unselected package pkg-config:arm64. 209s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 209s Unpacking pkg-config:arm64 (1.8.1-2) ... 209s Selecting previously unselected package zip. 209s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 209s Unpacking zip (3.0-13) ... 209s Selecting previously unselected package unzip. 209s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 209s Unpacking unzip (6.0-28ubuntu3) ... 209s Selecting previously unselected package xdg-utils. 209s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 209s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 209s Selecting previously unselected package r-base-core. 209s Preparing to unpack .../145-r-base-core_4.3.3-2build1_arm64.deb ... 209s Unpacking r-base-core (4.3.3-2build1) ... 210s Selecting previously unselected package liblzma-dev:arm64. 210s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 210s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 210s Selecting previously unselected package r-base-dev. 210s Preparing to unpack .../147-r-base-dev_4.3.3-2build1_all.deb ... 210s Unpacking r-base-dev (4.3.3-2build1) ... 210s Selecting previously unselected package pkg-r-autopkgtest. 210s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 210s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 210s Selecting previously unselected package r-bioc-biocgenerics. 210s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 210s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 210s Selecting previously unselected package r-bioc-biobase. 210s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 210s Unpacking r-bioc-biobase (2.62.0-1) ... 210s Selecting previously unselected package r-bioc-s4vectors. 210s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 210s Selecting previously unselected package r-bioc-iranges. 210s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 210s Unpacking r-bioc-iranges (2.36.0-1) ... 210s Selecting previously unselected package r-cran-dbi. 210s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 210s Unpacking r-cran-dbi (1.2.2-1) ... 210s Selecting previously unselected package r-cran-bit. 210s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 210s Unpacking r-cran-bit (4.0.5-1) ... 211s Selecting previously unselected package r-cran-bit64. 211s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit64 (4.0.5-1) ... 211s Selecting previously unselected package r-cran-rlang. 211s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 211s Unpacking r-cran-rlang (1.1.3-1) ... 211s Selecting previously unselected package r-cran-cli. 211s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 211s Unpacking r-cran-cli (3.6.2-1) ... 211s Selecting previously unselected package r-cran-glue. 211s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 211s Unpacking r-cran-glue (1.7.0-1) ... 211s Selecting previously unselected package r-cran-lifecycle. 211s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 211s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 211s Selecting previously unselected package r-cran-vctrs. 211s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 211s Unpacking r-cran-vctrs (0.6.5-1) ... 211s Selecting previously unselected package r-cran-blob. 211s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 211s Unpacking r-cran-blob (1.2.4-1) ... 211s Selecting previously unselected package r-cran-fastmap. 211s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 211s Unpacking r-cran-fastmap (1.1.1-1) ... 211s Selecting previously unselected package r-cran-cachem. 211s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 211s Unpacking r-cran-cachem (1.0.8-1) ... 211s Selecting previously unselected package r-cran-memoise. 211s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 211s Unpacking r-cran-memoise (2.0.1-1) ... 211s Selecting previously unselected package r-cran-pkgconfig. 211s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 211s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 211s Selecting previously unselected package r-cran-plogr. 211s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 211s Unpacking r-cran-plogr (0.2.0-3build1) ... 211s Selecting previously unselected package r-cran-cpp11. 211s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 211s Unpacking r-cran-cpp11 (0.4.7-1) ... 211s Selecting previously unselected package r-cran-rsqlite. 211s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 211s Unpacking r-cran-rsqlite (2.3.4-1) ... 212s Selecting previously unselected package r-cran-curl. 212s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 212s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-jsonlite. 212s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 212s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 212s Selecting previously unselected package r-cran-mime. 212s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 212s Unpacking r-cran-mime (0.12-1) ... 212s Selecting previously unselected package r-cran-sys. 212s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 212s Unpacking r-cran-sys (3.4.2-1) ... 212s Selecting previously unselected package r-cran-askpass. 212s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 212s Unpacking r-cran-askpass (1.2.0-1) ... 212s Selecting previously unselected package r-cran-openssl. 212s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 212s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 212s Selecting previously unselected package r-cran-r6. 212s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 212s Unpacking r-cran-r6 (2.5.1-1) ... 212s Selecting previously unselected package r-cran-httr. 212s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 212s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 212s Selecting previously unselected package r-cran-png. 212s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 212s Unpacking r-cran-png (0.1-8-1) ... 212s Selecting previously unselected package r-bioc-zlibbioc. 212s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 212s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 212s Selecting previously unselected package r-bioc-xvector. 212s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 212s Unpacking r-bioc-xvector (0.42.0-1) ... 212s Selecting previously unselected package r-cran-bitops. 212s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 212s Unpacking r-cran-bitops (1.0-7-1) ... 212s Selecting previously unselected package r-cran-rcurl. 212s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 212s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 212s Selecting previously unselected package r-bioc-genomeinfodbdata. 212s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 212s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 212s Selecting previously unselected package r-bioc-genomeinfodb. 212s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 212s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 213s Selecting previously unselected package r-cran-crayon. 213s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 213s Unpacking r-cran-crayon (1.5.2-1) ... 213s Selecting previously unselected package r-bioc-biostrings. 213s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 213s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 213s Selecting previously unselected package r-bioc-keggrest. 213s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 213s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 213s Selecting previously unselected package r-bioc-annotationdbi. 213s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 213s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 213s Selecting previously unselected package r-cran-generics. 213s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 213s Unpacking r-cran-generics (0.1.3-1) ... 213s Selecting previously unselected package r-cran-magrittr. 213s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 213s Unpacking r-cran-magrittr (2.0.3-1) ... 213s Selecting previously unselected package r-cran-fansi. 213s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 213s Unpacking r-cran-fansi (1.0.5-1) ... 213s Selecting previously unselected package r-cran-utf8. 213s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 213s Unpacking r-cran-utf8 (1.2.4-1) ... 213s Selecting previously unselected package r-cran-pillar. 213s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 213s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-tibble. 213s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 213s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 213s Selecting previously unselected package r-cran-withr. 213s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 213s Unpacking r-cran-withr (2.5.0-1) ... 213s Selecting previously unselected package r-cran-tidyselect. 213s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 213s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 214s Selecting previously unselected package r-cran-dplyr. 214s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 214s Unpacking r-cran-dplyr (1.1.4-1) ... 214s Selecting previously unselected package r-cran-purrr. 214s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 214s Unpacking r-cran-purrr (1.0.2-1) ... 214s Selecting previously unselected package r-cran-stringi. 214s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 214s Unpacking r-cran-stringi (1.8.3-1) ... 214s Selecting previously unselected package r-cran-stringr. 214s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 214s Unpacking r-cran-stringr (1.5.1-1) ... 214s Selecting previously unselected package r-cran-tidyr. 214s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 214s Unpacking r-cran-tidyr (1.3.1-1) ... 214s Selecting previously unselected package r-cran-dbplyr. 214s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 214s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 214s Selecting previously unselected package r-cran-filelock. 214s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 214s Unpacking r-cran-filelock (1.0.3-1) ... 214s Selecting previously unselected package r-bioc-biocfilecache. 214s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 214s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-biocmanager. 214s Preparing to unpack .../204-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 214s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 214s Selecting previously unselected package r-bioc-biocversion. 214s Preparing to unpack .../205-r-bioc-biocversion_3.18.1-1_all.deb ... 214s Unpacking r-bioc-biocversion (3.18.1-1) ... 214s Selecting previously unselected package r-cran-rappdirs. 214s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_arm64.deb ... 214s Unpacking r-cran-rappdirs (0.3.3-1) ... 214s Selecting previously unselected package r-cran-yaml. 214s Preparing to unpack .../207-r-cran-yaml_2.3.8-1_arm64.deb ... 214s Unpacking r-cran-yaml (2.3.8-1) ... 214s Selecting previously unselected package r-cran-littler. 214s Preparing to unpack .../208-r-cran-littler_0.3.19-1_arm64.deb ... 214s Unpacking r-cran-littler (0.3.19-1) ... 214s Selecting previously unselected package r-cran-pkgkitten. 214s Preparing to unpack .../209-r-cran-pkgkitten_0.2.3-1_all.deb ... 214s Unpacking r-cran-pkgkitten (0.2.3-1) ... 214s Selecting previously unselected package r-cran-rcpp. 214s Preparing to unpack .../210-r-cran-rcpp_1.0.12-1_arm64.deb ... 214s Unpacking r-cran-rcpp (1.0.12-1) ... 214s Selecting previously unselected package r-cran-later. 214s Preparing to unpack .../211-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 214s Unpacking r-cran-later (1.3.2+dfsg-1) ... 215s Selecting previously unselected package r-cran-promises. 215s Preparing to unpack .../212-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 215s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 215s Selecting previously unselected package r-cran-httpuv. 215s Preparing to unpack .../213-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 215s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 215s Selecting previously unselected package r-cran-xtable. 215s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 215s Unpacking r-cran-xtable (1:1.8-4-2) ... 215s Selecting previously unselected package r-cran-base64enc. 215s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 215s Unpacking r-cran-base64enc (0.1-3-3) ... 215s Selecting previously unselected package r-cran-digest. 215s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 215s Unpacking r-cran-digest (0.6.34-1) ... 215s Selecting previously unselected package r-cran-ellipsis. 215s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 215s Unpacking r-cran-ellipsis (0.3.2-2) ... 215s Selecting previously unselected package r-cran-htmltools. 215s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 215s Unpacking r-cran-htmltools (0.5.7-1) ... 215s Selecting previously unselected package r-cran-fontawesome. 215s Preparing to unpack .../219-r-cran-fontawesome_0.5.2-1_all.deb ... 215s Unpacking r-cran-fontawesome (0.5.2-1) ... 215s Selecting previously unselected package r-cran-sourcetools. 215s Preparing to unpack .../220-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 215s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 215s Selecting previously unselected package r-cran-commonmark. 215s Preparing to unpack .../221-r-cran-commonmark_1.9.1-1_arm64.deb ... 215s Unpacking r-cran-commonmark (1.9.1-1) ... 215s Selecting previously unselected package r-cran-jquerylib. 215s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 215s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 215s Selecting previously unselected package r-cran-fs. 215s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 215s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 215s Selecting previously unselected package r-cran-sass. 215s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 215s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 215s Selecting previously unselected package r-cran-bslib. 215s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 215s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 216s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 216s Preparing to unpack .../226-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 216s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 216s Selecting previously unselected package r-cran-shiny. 216s Preparing to unpack .../227-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 216s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 216s Selecting previously unselected package r-cran-evaluate. 216s Preparing to unpack .../228-r-cran-evaluate_0.23-1_all.deb ... 216s Unpacking r-cran-evaluate (0.23-1) ... 216s Selecting previously unselected package r-cran-xfun. 216s Preparing to unpack .../229-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 216s Unpacking r-cran-xfun (0.41+dfsg-1) ... 216s Selecting previously unselected package r-cran-highr. 216s Preparing to unpack .../230-r-cran-highr_0.10+dfsg-1_all.deb ... 216s Unpacking r-cran-highr (0.10+dfsg-1) ... 216s Selecting previously unselected package libjs-mathjax. 216s Preparing to unpack .../231-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 216s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 217s Selecting previously unselected package r-cran-knitr. 217s Preparing to unpack .../232-r-cran-knitr_1.45+dfsg-1_all.deb ... 217s Unpacking r-cran-knitr (1.45+dfsg-1) ... 217s Selecting previously unselected package r-cran-tinytex. 217s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 217s Unpacking r-cran-tinytex (0.49-1) ... 217s Selecting previously unselected package libjs-modernizr. 217s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 217s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 217s Selecting previously unselected package r-cran-rmarkdown. 217s Preparing to unpack .../235-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 217s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 217s Selecting previously unselected package r-cran-htmlwidgets. 217s Preparing to unpack .../236-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 217s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 217s Selecting previously unselected package r-cran-lazyeval. 217s Preparing to unpack .../237-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 217s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 217s Selecting previously unselected package r-cran-crosstalk. 217s Preparing to unpack .../238-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 217s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 217s Selecting previously unselected package r-cran-dt. 217s Preparing to unpack .../239-r-cran-dt_0.31+dfsg-1_all.deb ... 217s Unpacking r-cran-dt (0.31+dfsg-1) ... 217s Selecting previously unselected package r-bioc-interactivedisplaybase. 217s Preparing to unpack .../240-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 217s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 217s Selecting previously unselected package r-bioc-annotationhub. 217s Preparing to unpack .../241-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 217s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 217s Selecting previously unselected package r-bioc-biocio. 217s Preparing to unpack .../242-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 217s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 217s Selecting previously unselected package r-cran-formatr. 217s Preparing to unpack .../243-r-cran-formatr_1.14-1_all.deb ... 217s Unpacking r-cran-formatr (1.14-1) ... 217s Selecting previously unselected package r-cran-lambda.r. 217s Preparing to unpack .../244-r-cran-lambda.r_1.2.4-2build1_all.deb ... 217s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 217s Selecting previously unselected package r-cran-futile.options. 217s Preparing to unpack .../245-r-cran-futile.options_1.0.1-3build1_all.deb ... 217s Unpacking r-cran-futile.options (1.0.1-3build1) ... 218s Selecting previously unselected package r-cran-futile.logger. 218s Preparing to unpack .../246-r-cran-futile.logger_1.4.3-4build1_all.deb ... 218s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 218s Selecting previously unselected package r-cran-snow. 218s Preparing to unpack .../247-r-cran-snow_1%3a0.4.4-2_all.deb ... 218s Unpacking r-cran-snow (1:0.4.4-2) ... 218s Selecting previously unselected package r-cran-codetools. 218s Preparing to unpack .../248-r-cran-codetools_0.2-19-1_all.deb ... 218s Unpacking r-cran-codetools (0.2-19-1) ... 218s Selecting previously unselected package r-cran-bh. 218s Preparing to unpack .../249-r-cran-bh_1.84.0-1_all.deb ... 218s Unpacking r-cran-bh (1.84.0-1) ... 218s Selecting previously unselected package r-bioc-biocparallel. 218s Preparing to unpack .../250-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 218s Unpacking r-bioc-biocparallel (1.36.0-1) ... 218s Selecting previously unselected package r-cran-bookdown. 218s Preparing to unpack .../251-r-cran-bookdown_0.37+dfsg-1_all.deb ... 218s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 218s Selecting previously unselected package tex-common. 218s Preparing to unpack .../252-tex-common_6.18_all.deb ... 218s Unpacking tex-common (6.18) ... 218s Selecting previously unselected package t1utils. 218s Preparing to unpack .../253-t1utils_1.41-4build2_arm64.deb ... 218s Unpacking t1utils (1.41-4build2) ... 218s Selecting previously unselected package texlive-binaries. 218s Preparing to unpack .../254-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 218s Unpacking texlive-binaries (2023.20230311.66589-9) ... 218s Selecting previously unselected package texlive-base. 218s Preparing to unpack .../255-texlive-base_2023.20240207-1_all.deb ... 218s Unpacking texlive-base (2023.20240207-1) ... 219s Selecting previously unselected package texlive-latex-base. 219s Preparing to unpack .../256-texlive-latex-base_2023.20240207-1_all.deb ... 219s Unpacking texlive-latex-base (2023.20240207-1) ... 220s Selecting previously unselected package texlive-bibtex-extra. 220s Preparing to unpack .../257-texlive-bibtex-extra_2023.20240207-1_all.deb ... 220s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 221s Selecting previously unselected package r-bioc-biocstyle. 221s Preparing to unpack .../258-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 221s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 221s Selecting previously unselected package r-cran-xml. 221s Preparing to unpack .../259-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 221s Unpacking r-cran-xml (3.99-0.16.1-1) ... 221s Selecting previously unselected package r-cran-hms. 221s Preparing to unpack .../260-r-cran-hms_1.1.3-1_all.deb ... 221s Unpacking r-cran-hms (1.1.3-1) ... 221s Selecting previously unselected package r-cran-prettyunits. 221s Preparing to unpack .../261-r-cran-prettyunits_1.2.0-1_all.deb ... 221s Unpacking r-cran-prettyunits (1.2.0-1) ... 221s Selecting previously unselected package r-cran-progress. 221s Preparing to unpack .../262-r-cran-progress_1.2.3-1_all.deb ... 221s Unpacking r-cran-progress (1.2.3-1) ... 221s Selecting previously unselected package r-cran-xml2. 222s Preparing to unpack .../263-r-cran-xml2_1.3.6-1_arm64.deb ... 222s Unpacking r-cran-xml2 (1.3.6-1) ... 222s Selecting previously unselected package r-bioc-biomart. 222s Preparing to unpack .../264-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 222s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 222s Selecting previously unselected package r-bioc-genomicranges. 222s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 222s Selecting previously unselected package r-bioc-rhtslib. 222s Preparing to unpack .../266-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 222s Selecting previously unselected package r-bioc-rsamtools. 222s Preparing to unpack .../267-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 222s Selecting previously unselected package r-cran-matrixstats. 222s Preparing to unpack .../268-r-cran-matrixstats_1.2.0-1_arm64.deb ... 222s Unpacking r-cran-matrixstats (1.2.0-1) ... 222s Selecting previously unselected package r-bioc-matrixgenerics. 222s Preparing to unpack .../269-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 222s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 222s Selecting previously unselected package r-cran-lattice. 222s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 222s Unpacking r-cran-lattice (0.22-5-1) ... 222s Selecting previously unselected package r-cran-matrix. 222s Preparing to unpack .../271-r-cran-matrix_1.6-5-1_arm64.deb ... 222s Unpacking r-cran-matrix (1.6-5-1) ... 222s Selecting previously unselected package r-cran-abind. 222s Preparing to unpack .../272-r-cran-abind_1.4-5-2_all.deb ... 222s Unpacking r-cran-abind (1.4-5-2) ... 222s Selecting previously unselected package r-bioc-s4arrays. 222s Preparing to unpack .../273-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 222s Selecting previously unselected package r-bioc-sparsearray. 222s Preparing to unpack .../274-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 222s Selecting previously unselected package r-bioc-delayedarray. 222s Preparing to unpack .../275-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 222s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 222s Selecting previously unselected package r-bioc-summarizedexperiment. 222s Preparing to unpack .../276-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 222s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 222s Selecting previously unselected package r-bioc-genomicalignments. 222s Preparing to unpack .../277-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 222s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 223s Selecting previously unselected package r-cran-rjson. 223s Preparing to unpack .../278-r-cran-rjson_0.2.21-1_arm64.deb ... 223s Unpacking r-cran-rjson (0.2.21-1) ... 223s Selecting previously unselected package r-cran-restfulr. 223s Preparing to unpack .../279-r-cran-restfulr_0.0.15-1_arm64.deb ... 223s Unpacking r-cran-restfulr (0.0.15-1) ... 223s Selecting previously unselected package r-bioc-rtracklayer. 223s Preparing to unpack .../280-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 223s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 223s Selecting previously unselected package r-bioc-bsgenome. 223s Preparing to unpack .../281-r-bioc-bsgenome_1.70.2-1_all.deb ... 223s Unpacking r-bioc-bsgenome (1.70.2-1) ... 223s Selecting previously unselected package r-bioc-genomicfeatures. 223s Preparing to unpack .../282-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 223s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 223s Selecting previously unselected package r-cran-survival. 223s Preparing to unpack .../283-r-cran-survival_3.5-8-1_arm64.deb ... 223s Unpacking r-cran-survival (3.5-8-1) ... 223s Selecting previously unselected package r-bioc-snpstats. 223s Preparing to unpack .../284-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 223s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 223s Selecting previously unselected package r-bioc-variantannotation. 223s Preparing to unpack .../285-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 223s Unpacking r-bioc-variantannotation (1.48.1-1) ... 224s Selecting previously unselected package r-cran-colorspace. 224s Preparing to unpack .../286-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 224s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 224s Selecting previously unselected package r-cran-farver. 224s Preparing to unpack .../287-r-cran-farver_2.1.1-1_arm64.deb ... 224s Unpacking r-cran-farver (2.1.1-1) ... 224s Selecting previously unselected package r-cran-gtable. 224s Preparing to unpack .../288-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 224s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 224s Selecting previously unselected package r-cran-isoband. 224s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_arm64.deb ... 224s Unpacking r-cran-isoband (0.2.7-1) ... 224s Selecting previously unselected package r-cran-mass. 224s Preparing to unpack .../290-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 224s Unpacking r-cran-mass (7.3-60.0.1-1) ... 224s Selecting previously unselected package r-cran-nlme. 224s Preparing to unpack .../291-r-cran-nlme_3.1.164-1_arm64.deb ... 224s Unpacking r-cran-nlme (3.1.164-1) ... 224s Selecting previously unselected package r-cran-mgcv. 224s Preparing to unpack .../292-r-cran-mgcv_1.9-1-1_arm64.deb ... 224s Unpacking r-cran-mgcv (1.9-1-1) ... 224s Selecting previously unselected package r-cran-labeling. 224s Preparing to unpack .../293-r-cran-labeling_0.4.3-1_all.deb ... 224s Unpacking r-cran-labeling (0.4.3-1) ... 224s Selecting previously unselected package r-cran-munsell. 224s Preparing to unpack .../294-r-cran-munsell_0.5.0-2build1_all.deb ... 224s Unpacking r-cran-munsell (0.5.0-2build1) ... 224s Selecting previously unselected package r-cran-rcolorbrewer. 224s Preparing to unpack .../295-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 224s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 224s Selecting previously unselected package r-cran-viridislite. 224s Preparing to unpack .../296-r-cran-viridislite_0.4.2-2_all.deb ... 224s Unpacking r-cran-viridislite (0.4.2-2) ... 225s Selecting previously unselected package r-cran-scales. 225s Preparing to unpack .../297-r-cran-scales_1.3.0-1_all.deb ... 225s Unpacking r-cran-scales (1.3.0-1) ... 225s Selecting previously unselected package r-cran-ggplot2. 225s Preparing to unpack .../298-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 225s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 225s Selecting previously unselected package r-cran-runit. 225s Preparing to unpack .../299-r-cran-runit_0.4.32-3_all.deb ... 225s Unpacking r-cran-runit (0.4.32-3) ... 225s Selecting previously unselected package autopkgtest-satdep. 225s Preparing to unpack .../300-1-autopkgtest-satdep.deb ... 225s Unpacking autopkgtest-satdep (0) ... 225s 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(1.8.0+dfsg-1) ... 232s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 232s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 232s Setting up r-bioc-genomicalignments (1.38.2-1) ... 232s Setting up r-cran-bookdown (0.37+dfsg-1) ... 232s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 232s Setting up r-bioc-rtracklayer (1.62.0-1) ... 232s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 232s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 232s Setting up r-bioc-bsgenome (1.70.2-1) ... 232s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 232s Setting up r-cran-dt (0.31+dfsg-1) ... 232s Setting up r-bioc-variantannotation (1.48.1-1) ... 232s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 232s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 232s Setting up autopkgtest-satdep (0) ... 232s Processing triggers for man-db (2.12.0-3) ... 233s Processing triggers for install-info (7.1-3) ... 233s Processing triggers for libc-bin (2.39-0ubuntu2) ... 233s Processing triggers for tex-common (6.18) ... 233s Running updmap-sys. This may take some time... done. 234s Running mktexlsr /var/lib/texmf ... done. 234s Building format(s) --all. 270s This may take some time... done. 286s (Reading database ... 126380 files and directories currently installed.) 286s Removing autopkgtest-satdep (0) ... 287s autopkgtest [17:51:53]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 287s autopkgtest [17:51:53]: test pkg-r-autopkgtest: [----------------------- 287s Test: Try to load the R library VariantAnnotation 288s 288s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 288s Copyright (C) 2024 The R Foundation for Statistical Computing 288s Platform: aarch64-unknown-linux-gnu (64-bit) 288s 288s R is free software and comes with ABSOLUTELY NO WARRANTY. 288s You are welcome to redistribute it under certain conditions. 288s Type 'license()' or 'licence()' for distribution details. 288s 288s R is a collaborative project with many contributors. 288s Type 'contributors()' for more information and 288s 'citation()' on how to cite R or R packages in publications. 288s 288s Type 'demo()' for some demos, 'help()' for on-line help, or 288s 'help.start()' for an HTML browser interface to help. 288s Type 'q()' to quit R. 288s 288s > library('VariantAnnotation') 288s Loading required package: BiocGenerics 288s 288s Attaching package: ‘BiocGenerics’ 288s 288s The following objects are masked from ‘package:stats’: 288s 288s IQR, mad, sd, var, xtabs 288s 288s The following objects are masked from ‘package:base’: 288s 288s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 288s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 288s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 288s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 288s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 288s table, tapply, union, unique, unsplit, which.max, which.min 288s 288s Loading required package: MatrixGenerics 288s Loading required package: matrixStats 288s 288s Attaching package: ‘MatrixGenerics’ 288s 288s The following objects are masked from ‘package:matrixStats’: 288s 288s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 288s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 288s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 288s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 288s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 288s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 288s colWeightedMeans, colWeightedMedians, colWeightedSds, 288s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 288s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 288s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 288s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 288s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 288s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 288s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 288s rowWeightedSds, rowWeightedVars 288s 288s Loading required package: GenomeInfoDb 288s Loading required package: S4Vectors 288s Loading required package: stats4 289s 289s Attaching package: ‘S4Vectors’ 289s 289s The following object is masked from ‘package:utils’: 289s 289s findMatches 289s 289s The following objects are masked from ‘package:base’: 289s 289s expand.grid, I, unname 289s 289s Loading required package: IRanges 290s Loading required package: GenomicRanges 291s Loading required package: SummarizedExperiment 291s Loading required package: Biobase 291s Welcome to Bioconductor 291s 291s Vignettes contain introductory material; view with 291s 'browseVignettes()'. To cite Bioconductor, see 291s 'citation("Biobase")', and for packages 'citation("pkgname")'. 291s 291s 291s Attaching package: ‘Biobase’ 291s 291s The following object is masked from ‘package:MatrixGenerics’: 291s 291s rowMedians 291s 291s The following objects are masked from ‘package:matrixStats’: 291s 291s anyMissing, rowMedians 291s 294s Loading required package: Rsamtools 294s Loading required package: Biostrings 294s Loading required package: XVector 295s 295s Attaching package: ‘Biostrings’ 295s 295s The following object is masked from ‘package:base’: 295s 295s strsplit 295s 302s 302s Attaching package: ‘VariantAnnotation’ 302s 302s > 302s > 302s The following object is masked from ‘package:base’: 302s 302s tabulate 302s 303s Other tests are currently unsupported! 303s They will be progressively added. 303s autopkgtest [17:52:09]: test pkg-r-autopkgtest: -----------------------] 304s pkg-r-autopkgtest PASS 304s autopkgtest [17:52:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 304s autopkgtest [17:52:10]: @@@@@@@@@@@@@@@@@@@@ summary 304s pkg-r-autopkgtest PASS 358s Creating nova instance adt-noble-arm64-r-bioc-variantannotation-20240316-174706-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...