0s autopkgtest [13:45:55]: starting date and time: 2024-03-16 13:45:55+0000 0s autopkgtest [13:45:55]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:45:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5q_peyrk/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rhtslib,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rhtslib/2.4.1+dfsg-3build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-19.secgroup --name adt-noble-arm64-r-bioc-variantannotation-20240316-134555-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 170s autopkgtest [13:48:45]: testbed dpkg architecture: arm64 170s autopkgtest [13:48:45]: testbed apt version: 2.7.12 170s autopkgtest [13:48:45]: @@@@@@@@@@@@@@@@@@@@ test bed setup 172s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 173s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 173s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 173s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 173s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 173s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 173s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 173s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 173s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 173s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 174s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 174s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 174s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 184s Fetched 9092 kB in 4s (2088 kB/s) 185s Reading package lists... 195s Reading package lists... 196s Building dependency tree... 196s Reading state information... 198s Calculating upgrade... 200s The following packages will be REMOVED: 200s libssl3 200s The following NEW packages will be installed: 200s libssl3t64 200s The following packages have been kept back: 200s curl 200s The following packages will be upgraded: 200s openssl 200s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 200s Need to get 2753 kB of archives. 200s After this operation, 72.7 kB of additional disk space will be used. 200s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 201s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 204s Fetched 2753 kB in 2s (1570 kB/s) 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 205s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 205s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 206s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 206s wget depends on libssl3 (>= 3.0.0). 206s u-boot-tools depends on libssl3 (>= 3.0.0). 206s tnftp depends on libssl3 (>= 3.0.0). 206s tcpdump depends on libssl3 (>= 3.0.0). 206s systemd-resolved depends on libssl3 (>= 3.0.0). 206s systemd depends on libssl3 (>= 3.0.0). 206s sudo depends on libssl3 (>= 3.0.0). 206s sbsigntool depends on libssl3 (>= 3.0.0). 206s rsync depends on libssl3 (>= 3.0.0). 206s python3-cryptography depends on libssl3 (>= 3.0.0). 206s openssh-server depends on libssl3 (>= 3.0.10). 206s openssh-client depends on libssl3 (>= 3.0.10). 206s mtd-utils depends on libssl3 (>= 3.0.0). 206s mokutil depends on libssl3 (>= 3.0.0). 206s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 206s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 206s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 206s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 206s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 206s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 206s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 206s libnvme1 depends on libssl3 (>= 3.0.0). 206s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 206s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 206s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 206s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 206s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 206s kmod depends on libssl3 (>= 3.0.0). 206s dhcpcd-base depends on libssl3 (>= 3.0.0). 206s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 206s 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 206s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 206s Selecting previously unselected package libssl3t64:arm64. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 206s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 206s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 207s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 207s Setting up openssl (3.0.13-0ubuntu1) ... 207s Processing triggers for man-db (2.12.0-3) ... 209s Processing triggers for libc-bin (2.39-0ubuntu2) ... 210s Reading package lists... 211s Building dependency tree... 211s Reading state information... 214s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 215s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 215s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 215s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 215s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 222s Reading package lists... 222s Reading package lists... 223s Building dependency tree... 223s Reading state information... 225s Calculating upgrade... 226s The following packages have been kept back: 226s curl 226s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 226s Reading package lists... 227s Building dependency tree... 227s Reading state information... 230s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 234s autopkgtest [13:49:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 235s autopkgtest [13:49:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 239s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 239s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 239s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 240s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 240s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 240s gpgv: issuer "tillea@rki.de" 240s gpgv: Can't check signature: No public key 240s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 240s autopkgtest [13:49:55]: testing package r-bioc-variantannotation version 1.48.1-1 242s autopkgtest [13:49:57]: build not needed 245s autopkgtest [13:50:00]: test pkg-r-autopkgtest: preparing testbed 249s Reading package lists... 249s Building dependency tree... 249s Reading state information... 251s Starting pkgProblemResolver with broken count: 0 251s Starting 2 pkgProblemResolver with broken count: 0 251s Done 253s The following additional packages will be installed: 253s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 253s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 253s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 253s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 253s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 253s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 253s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 253s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 253s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 253s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 253s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 253s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 253s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 253s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 253s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 253s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 253s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 253s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 253s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 253s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 253s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 253s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 253s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 253s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 253s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 253s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 253s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 253s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 253s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 253s r-base-dev r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 253s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 253s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 253s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 253s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 253s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 253s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 253s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 253s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 253s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 253s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 253s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 253s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 253s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 253s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 253s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 253s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 253s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 253s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 253s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 253s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 253s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 253s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 253s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 253s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 253s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 253s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 253s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 253s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 253s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 253s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 253s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 253s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 253s x11-common xdg-utils zip zlib1g-dev 253s Suggested packages: 253s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 253s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 253s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 253s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 253s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 253s libboost-context1.83-dev libboost-contract1.83-dev 253s libboost-coroutine1.83-dev libboost-date-time1.83-dev 253s libboost-exception1.83-dev libboost-fiber1.83-dev 253s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 253s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 253s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 253s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 253s libboost-numpy1.83-dev libboost-program-options1.83-dev 253s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 253s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 253s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 253s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 253s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 253s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 253s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 253s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 253s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 253s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 253s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 253s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 253s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 253s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 253s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 253s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 253s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 253s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 253s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 253s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 253s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 253s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 253s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 253s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 253s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 253s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 253s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 253s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 253s hintview texlive-latex-base-doc wp2latex 253s Recommended packages: 253s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 253s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 253s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 253s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 253s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 253s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 253s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 253s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 253s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 253s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 253s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 253s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 253s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 253s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 253s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 253s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 253s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 253s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 253s x11-xserver-utils 254s The following packages will be REMOVED: 254s libcurl4 libpsl5 254s The following NEW packages will be installed: 254s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 254s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 254s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 254s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 254s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 254s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 254s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 254s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 254s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 254s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 254s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 254s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 254s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 254s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 254s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 254s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 254s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 254s libjs-popper.js libjs-prettify libjs-sifter.js 254s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 254s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 254s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 254s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 254s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 254s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 254s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 254s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 254s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 254s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 254s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 254s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 254s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 254s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 254s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 254s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 254s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 254s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 254s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 254s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 254s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 254s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 254s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 254s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 254s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 254s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 254s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 254s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 254s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 254s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 254s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 254s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 254s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 254s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 254s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 254s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 254s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 254s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 254s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 254s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 254s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 254s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 254s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 254s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 254s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 254s x11-common xdg-utils zip zlib1g-dev 254s The following packages will be upgraded: 254s curl 255s 1 upgraded, 302 newly installed, 2 to remove and 0 not upgraded. 255s Need to get 458 MB/458 MB of archives. 255s After this operation, 1394 MB of additional disk space will be used. 255s Get:1 /tmp/autopkgtest.IJfU4s/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 255s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 255s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 255s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 255s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 255s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 256s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 256s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 256s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 256s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 256s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 257s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 257s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 257s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 258s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 258s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 258s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 258s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 258s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 258s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 258s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 258s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 258s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 259s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 259s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 259s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 259s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 259s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 260s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 260s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 260s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 260s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 260s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 261s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 261s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 261s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 261s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 261s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 261s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 261s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 261s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 261s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 261s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 261s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 261s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 261s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 261s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 261s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 261s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 261s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 262s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 262s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 262s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 262s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 262s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 262s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 262s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 262s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 262s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 262s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 262s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 263s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 263s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 263s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 263s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 263s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 263s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 263s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 263s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 263s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 263s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 263s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 263s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 263s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 263s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 264s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 264s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 264s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 264s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 264s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 264s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 264s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 264s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 264s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 264s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 264s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 264s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 264s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 264s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 264s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 264s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 264s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 264s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 264s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 264s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 264s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 264s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 264s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 264s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 265s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 265s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 265s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 265s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 265s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 265s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 265s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 265s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 265s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 265s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 265s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 265s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 265s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 265s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 265s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 265s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 265s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 265s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 265s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 265s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 265s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 265s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 265s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 265s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 265s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 265s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 265s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 266s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 266s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 266s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 266s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 266s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 266s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 266s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 266s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 266s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 266s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 266s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 266s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 266s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 266s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 266s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 266s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 267s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 267s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 267s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 267s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 267s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 267s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 267s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 269s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 269s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 269s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 269s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 269s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 269s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 269s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 269s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 269s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 270s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 270s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 270s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 270s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 270s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 270s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 270s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 270s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 270s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 270s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 270s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 270s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 270s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 270s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 270s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 270s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 270s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 270s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 270s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 270s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 270s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 270s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 270s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 270s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 270s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 270s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 270s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 270s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 271s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 271s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 271s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 272s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 272s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 273s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 273s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 273s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 273s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 273s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 273s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 273s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 273s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 273s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 273s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 273s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 273s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 273s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 274s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 274s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 274s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 274s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 274s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 274s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 274s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 274s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 274s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 274s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 274s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 274s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 274s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 274s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 274s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 274s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 274s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 274s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 274s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 274s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 274s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 274s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 274s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 274s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 274s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 275s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 275s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 275s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 275s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 275s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 275s Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 276s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 276s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 276s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 276s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 276s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 276s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 276s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 276s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 276s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 276s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 276s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 276s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 276s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 276s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 276s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 276s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 276s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 276s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 276s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 276s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 276s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 276s Get:257 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 276s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 277s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 278s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 278s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 283s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 283s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 283s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 283s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 283s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 283s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 283s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 283s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 283s Get:270 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3build1 [1358 kB] 283s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 283s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 283s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 283s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 283s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 284s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 284s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 284s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 284s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 284s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 284s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 284s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 284s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 284s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 284s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 285s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 285s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 285s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 286s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 286s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 286s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 286s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 286s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 286s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 286s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 287s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 287s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 287s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 287s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 287s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 287s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 287s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 287s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 291s Preconfiguring packages ... 292s Fetched 458 MB in 33s (13.9 MB/s) 292s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 292s wget depends on libpsl5 (>= 0.16.0). 292s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 292s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 292s 293s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 293s Removing libpsl5:arm64 (0.21.2-1build1) ... 293s Selecting previously unselected package libpsl5t64:arm64. 293s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 293s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 293s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 293s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 293s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 294s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 294s Selecting previously unselected package libcurl4t64:arm64. 294s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 294s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 294s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 295s Selecting previously unselected package libc-dev-bin. 295s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 295s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 295s Selecting previously unselected package linux-libc-dev:arm64. 295s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 295s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 296s Selecting previously unselected package libcrypt-dev:arm64. 296s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 296s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 296s Selecting previously unselected package libtirpc-dev:arm64. 296s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 296s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 297s Selecting previously unselected package libnsl-dev:arm64. 297s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 297s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 297s Selecting previously unselected package rpcsvc-proto. 297s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 297s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 297s Selecting previously unselected package libc6-dev:arm64. 297s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 297s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 298s Selecting previously unselected package libisl23:arm64. 298s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 298s Unpacking libisl23:arm64 (0.26-3) ... 299s Selecting previously unselected package libmpc3:arm64. 299s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 299s Unpacking libmpc3:arm64 (1.3.1-1) ... 299s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 299s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 299s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 301s Selecting previously unselected package cpp-13. 301s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 301s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 301s Selecting previously unselected package cpp-aarch64-linux-gnu. 301s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 301s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 301s Selecting previously unselected package cpp. 301s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 301s Unpacking cpp (4:13.2.0-7ubuntu1) ... 301s Selecting previously unselected package libcc1-0:arm64. 301s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 301s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 301s Selecting previously unselected package libgomp1:arm64. 301s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 301s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 302s Selecting previously unselected package libitm1:arm64. 302s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 302s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 302s Selecting previously unselected package libatomic1:arm64. 302s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 302s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 302s Selecting previously unselected package libasan8:arm64. 302s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 302s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 303s Selecting previously unselected package liblsan0:arm64. 303s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 303s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 304s Selecting previously unselected package libtsan2:arm64. 304s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 304s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 304s Selecting previously unselected package libubsan1:arm64. 304s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 304s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libhwasan0:arm64. 305s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 305s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libgcc-13-dev:arm64. 305s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 305s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 306s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 306s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 306s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 311s Selecting previously unselected package gcc-13. 311s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 311s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 311s Selecting previously unselected package gcc-aarch64-linux-gnu. 311s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 311s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 312s Selecting previously unselected package gcc. 312s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 312s Unpacking gcc (4:13.2.0-7ubuntu1) ... 312s Selecting previously unselected package libstdc++-13-dev:arm64. 312s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 312s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 315s Selecting previously unselected package g++-13-aarch64-linux-gnu. 315s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 315s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-13. 317s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 317s Unpacking g++-13 (13.2.0-17ubuntu2) ... 317s Selecting previously unselected package g++-aarch64-linux-gnu. 317s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 317s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package g++. 317s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 317s Unpacking g++ (4:13.2.0-7ubuntu1) ... 317s Selecting previously unselected package build-essential. 317s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 317s Unpacking build-essential (12.10ubuntu1) ... 318s Selecting previously unselected package dctrl-tools. 318s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 318s Unpacking dctrl-tools (2.24-3build2) ... 318s Selecting previously unselected package fonts-dejavu-mono. 318s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 318s Unpacking fonts-dejavu-mono (2.37-8) ... 318s Selecting previously unselected package fonts-dejavu-core. 318s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 318s Unpacking fonts-dejavu-core (2.37-8) ... 319s Selecting previously unselected package fontconfig-config. 319s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 320s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 321s Selecting previously unselected package libfontconfig1:arm64. 321s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 321s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 321s Selecting previously unselected package fontconfig. 321s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 321s Unpacking fontconfig (2.15.0-1ubuntu1) ... 321s Selecting previously unselected package fonts-font-awesome. 321s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 321s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 321s Selecting previously unselected package fonts-glyphicons-halflings. 321s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 321s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 322s Selecting previously unselected package fonts-lmodern. 322s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 322s Unpacking fonts-lmodern (2.005-1) ... 322s Selecting previously unselected package fonts-mathjax. 322s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 322s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 323s Selecting previously unselected package libgfortran5:arm64. 323s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 323s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 323s Selecting previously unselected package libgfortran-13-dev:arm64. 323s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 323s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 324s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 324s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 324s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gfortran-13. 327s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 327s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 327s Selecting previously unselected package gfortran-aarch64-linux-gnu. 327s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package gfortran. 327s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 327s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 327s Selecting previously unselected package icu-devtools. 327s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 327s Unpacking icu-devtools (74.2-1ubuntu1) ... 327s Selecting previously unselected package javascript-common. 327s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 327s Unpacking javascript-common (11+nmu1) ... 328s Selecting previously unselected package libio-string-perl. 328s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 328s Unpacking libio-string-perl (1.08-4) ... 328s Selecting previously unselected package liblatex-tounicode-perl. 328s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 328s Unpacking liblatex-tounicode-perl (0.54-2) ... 328s Selecting previously unselected package libbibtex-parser-perl. 328s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 328s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 328s Selecting previously unselected package libblas3:arm64. 328s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 328s Unpacking libblas3:arm64 (3.12.0-3) ... 328s Selecting previously unselected package libblas-dev:arm64. 328s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 328s Unpacking libblas-dev:arm64 (3.12.0-3) ... 329s Selecting previously unselected package libboost1.83-dev:arm64. 329s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 329s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 358s Selecting previously unselected package libboost-dev:arm64. 358s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 358s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 358s Selecting previously unselected package libbz2-dev:arm64. 358s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 358s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 358s Selecting previously unselected package libpixman-1-0:arm64. 358s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 358s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 359s Selecting previously unselected package libxcb-render0:arm64. 359s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 359s Unpacking libxcb-render0:arm64 (1.15-1) ... 359s Selecting previously unselected package libxcb-shm0:arm64. 359s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 359s Unpacking libxcb-shm0:arm64 (1.15-1) ... 359s Selecting previously unselected package libxrender1:arm64. 359s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 359s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 359s Selecting previously unselected package libcairo2:arm64. 359s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 359s Unpacking libcairo2:arm64 (1.18.0-1) ... 360s Selecting previously unselected package libdatrie1:arm64. 360s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 360s Unpacking libdatrie1:arm64 (0.2.13-3) ... 360s Selecting previously unselected package libdeflate0:arm64. 360s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 360s Unpacking libdeflate0:arm64 (1.19-1) ... 360s Selecting previously unselected package libgraphite2-3:arm64. 360s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 360s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 360s Selecting previously unselected package libharfbuzz0b:arm64. 360s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 360s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 360s Selecting previously unselected package x11-common. 360s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 360s Unpacking x11-common (1:7.7+23ubuntu2) ... 360s Selecting previously unselected package libice6:arm64. 360s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 360s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 361s Selecting previously unselected package libicu-dev:arm64. 361s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 361s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 363s Selecting previously unselected package libjpeg-turbo8:arm64. 363s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 363s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 364s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 364s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 364s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 364s Selecting previously unselected package libjpeg8:arm64. 364s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 364s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 364s Selecting previously unselected package libjpeg8-dev:arm64. 364s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 364s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 364s Selecting previously unselected package libjpeg-dev:arm64. 364s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 364s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 364s Selecting previously unselected package libjs-bootstrap. 364s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 364s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 364s Selecting previously unselected package libjs-popper.js. 364s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 364s Unpacking libjs-popper.js (1.16.1+ds-6) ... 365s Selecting previously unselected package libjs-bootstrap4. 365s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 365s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 365s Selecting previously unselected package libjs-d3. 365s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 365s Unpacking libjs-d3 (3.5.17-4) ... 365s Selecting previously unselected package libjs-es5-shim. 366s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 366s Unpacking libjs-es5-shim (4.6.7-2) ... 366s Selecting previously unselected package libjs-highlight.js. 366s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 366s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 366s Selecting previously unselected package libjs-jquery. 366s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 366s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 366s Selecting previously unselected package libjs-jquery-datatables. 366s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 366s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 366s Selecting previously unselected package libjs-jquery-datatables-extensions. 366s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 366s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 367s Selecting previously unselected package libjs-sifter.js. 367s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 367s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 367s Selecting previously unselected package libjs-microplugin.js. 367s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 367s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 367s Selecting previously unselected package libjs-jquery-selectize.js. 367s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 367s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 367s Selecting previously unselected package libjs-jquery-ui. 367s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 367s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 368s Selecting previously unselected package libjs-json. 368s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 368s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 368s Selecting previously unselected package libjs-lunr. 368s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 368s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 368s Selecting previously unselected package libjs-prettify. 368s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 368s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 368s Selecting previously unselected package libkpathsea6:arm64. 368s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 368s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 368s Selecting previously unselected package liblapack3:arm64. 368s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 369s Unpacking liblapack3:arm64 (3.12.0-3) ... 369s Selecting previously unselected package liblapack-dev:arm64. 369s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 369s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 370s Selecting previously unselected package liblerc4:arm64. 370s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 370s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 370s Selecting previously unselected package liblua5.4-0:arm64. 370s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 370s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 370s Selecting previously unselected package libncurses-dev:arm64. 371s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 371s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 371s Selecting previously unselected package libthai-data. 371s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 371s Unpacking libthai-data (0.1.29-2) ... 371s Selecting previously unselected package libthai0:arm64. 371s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 371s Unpacking libthai0:arm64 (0.1.29-2) ... 371s Selecting previously unselected package libpango-1.0-0:arm64. 371s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 371s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 372s Selecting previously unselected package libpangoft2-1.0-0:arm64. 372s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 372s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 372s Selecting previously unselected package libpangocairo-1.0-0:arm64. 372s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 372s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 372s Selecting previously unselected package libpaper1:arm64. 372s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 372s Unpacking libpaper1:arm64 (1.1.29) ... 372s Selecting previously unselected package libpaper-utils. 372s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 372s Unpacking libpaper-utils (1.1.29) ... 373s Selecting previously unselected package libpcre2-16-0:arm64. 373s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 373s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 373s Selecting previously unselected package libpcre2-32-0:arm64. 373s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 373s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 373s Selecting previously unselected package libpcre2-posix3:arm64. 373s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 373s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 373s Selecting previously unselected package libpcre2-dev:arm64. 373s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 373s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 373s Selecting previously unselected package libpkgconf3:arm64. 373s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 373s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 374s Selecting previously unselected package zlib1g-dev:arm64. 374s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 374s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 374s Selecting previously unselected package libpng-dev:arm64. 374s Preparing to unpack .../112-libpng-dev_1.6.43-1_arm64.deb ... 374s Unpacking libpng-dev:arm64 (1.6.43-1) ... 374s Selecting previously unselected package libpotrace0:arm64. 374s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 374s Unpacking libpotrace0:arm64 (1.16-2) ... 374s Selecting previously unselected package libptexenc1:arm64. 374s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 374s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 374s Selecting previously unselected package libreadline-dev:arm64. 374s Preparing to unpack .../115-libreadline-dev_8.2-3_arm64.deb ... 374s Unpacking libreadline-dev:arm64 (8.2-3) ... 375s Selecting previously unselected package libsharpyuv0:arm64. 375s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 375s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 375s Selecting previously unselected package libsm6:arm64. 375s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 375s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 375s Selecting previously unselected package libsynctex2:arm64. 375s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 375s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 375s Selecting previously unselected package libtcl8.6:arm64. 375s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 375s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 376s Selecting previously unselected package libteckit0:arm64. 376s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 376s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 376s Selecting previously unselected package libtexlua53-5:arm64. 377s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 377s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 377s Selecting previously unselected package libjbig0:arm64. 377s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 377s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 377s Selecting previously unselected package libwebp7:arm64. 377s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 377s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 377s Selecting previously unselected package libtiff6:arm64. 377s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 377s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 377s Selecting previously unselected package libxft2:arm64. 377s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 377s Unpacking libxft2:arm64 (2.3.6-1) ... 378s Selecting previously unselected package libxss1:arm64. 378s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 378s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 378s Selecting previously unselected package libtk8.6:arm64. 378s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 378s Unpacking libtk8.6:arm64 (8.6.13-2) ... 378s Selecting previously unselected package libxt6:arm64. 378s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_arm64.deb ... 378s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 379s Selecting previously unselected package libxmu6:arm64. 379s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 379s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 379s Selecting previously unselected package libxpm4:arm64. 379s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 379s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 379s Selecting previously unselected package libxaw7:arm64. 379s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 379s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 379s Selecting previously unselected package libxi6:arm64. 379s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 379s Unpacking libxi6:arm64 (2:1.8.1-1) ... 379s Selecting previously unselected package libzzip-0-13:arm64. 379s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 379s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 379s Selecting previously unselected package node-bootstrap-sass. 380s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 380s Unpacking node-bootstrap-sass (3.4.3-2) ... 380s Selecting previously unselected package node-html5shiv. 380s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 380s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 380s Selecting previously unselected package node-normalize.css. 380s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 380s Unpacking node-normalize.css (8.0.1-5) ... 380s Selecting previously unselected package pandoc-data. 380s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 380s Unpacking pandoc-data (3.1.3-1) ... 381s Selecting previously unselected package pandoc. 381s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 381s Unpacking pandoc (3.1.3+ds-2) ... 395s Selecting previously unselected package pkgconf-bin. 395s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 395s Unpacking pkgconf-bin (1.8.1-2) ... 395s Selecting previously unselected package pkgconf:arm64. 395s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 395s Unpacking pkgconf:arm64 (1.8.1-2) ... 395s Selecting previously unselected package pkg-config:arm64. 395s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 395s Unpacking pkg-config:arm64 (1.8.1-2) ... 395s Selecting previously unselected package zip. 395s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 395s Unpacking zip (3.0-13) ... 396s Selecting previously unselected package unzip. 396s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 396s Unpacking unzip (6.0-28ubuntu3) ... 396s Selecting previously unselected package xdg-utils. 396s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 396s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 396s Selecting previously unselected package r-base-core. 396s Preparing to unpack .../145-r-base-core_4.3.2-1build1_arm64.deb ... 396s Unpacking r-base-core (4.3.2-1build1) ... 400s Selecting previously unselected package liblzma-dev:arm64. 400s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 400s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 401s Selecting previously unselected package r-base-dev. 401s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 401s Unpacking r-base-dev (4.3.2-1build1) ... 401s Selecting previously unselected package pkg-r-autopkgtest. 401s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 401s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 401s Selecting previously unselected package r-bioc-biocgenerics. 401s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 401s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 401s Selecting previously unselected package r-bioc-biobase. 401s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 401s Unpacking r-bioc-biobase (2.62.0-1) ... 402s Selecting previously unselected package r-bioc-s4vectors. 402s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 402s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 403s Selecting previously unselected package r-bioc-iranges. 403s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 403s Unpacking r-bioc-iranges (2.36.0-1) ... 404s Selecting previously unselected package r-cran-dbi. 404s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 404s Unpacking r-cran-dbi (1.2.2-1) ... 404s Selecting previously unselected package r-cran-bit. 404s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 404s Unpacking r-cran-bit (4.0.5-1) ... 404s Selecting previously unselected package r-cran-bit64. 405s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 405s Unpacking r-cran-bit64 (4.0.5-1) ... 405s Selecting previously unselected package r-cran-rlang. 405s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 405s Unpacking r-cran-rlang (1.1.3-1) ... 405s Selecting previously unselected package r-cran-cli. 405s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 405s Unpacking r-cran-cli (3.6.2-1) ... 406s Selecting previously unselected package r-cran-glue. 406s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 406s Unpacking r-cran-glue (1.7.0-1) ... 406s Selecting previously unselected package r-cran-lifecycle. 406s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 406s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 407s Selecting previously unselected package r-cran-vctrs. 407s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 407s Unpacking r-cran-vctrs (0.6.5-1) ... 407s Selecting previously unselected package r-cran-blob. 407s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 407s Unpacking r-cran-blob (1.2.4-1) ... 407s Selecting previously unselected package r-cran-fastmap. 408s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 408s Unpacking r-cran-fastmap (1.1.1-1) ... 408s Selecting previously unselected package r-cran-cachem. 408s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 408s Unpacking r-cran-cachem (1.0.8-1) ... 408s Selecting previously unselected package r-cran-memoise. 408s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 408s Unpacking r-cran-memoise (2.0.1-1) ... 408s Selecting previously unselected package r-cran-pkgconfig. 408s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 408s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 409s Selecting previously unselected package r-cran-plogr. 409s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 409s Unpacking r-cran-plogr (0.2.0-3build1) ... 409s Selecting previously unselected package r-cran-cpp11. 409s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 409s Unpacking r-cran-cpp11 (0.4.7-1) ... 409s Selecting previously unselected package r-cran-rsqlite. 409s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 409s Unpacking r-cran-rsqlite (2.3.4-1) ... 410s Selecting previously unselected package r-cran-curl. 410s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 410s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 410s Selecting previously unselected package r-cran-jsonlite. 410s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 410s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 410s Selecting previously unselected package r-cran-mime. 410s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 410s Unpacking r-cran-mime (0.12-1) ... 410s Selecting previously unselected package r-cran-sys. 410s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 411s Unpacking r-cran-sys (3.4.2-1) ... 411s Selecting previously unselected package r-cran-askpass. 411s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 411s Unpacking r-cran-askpass (1.2.0-1) ... 411s Selecting previously unselected package r-cran-openssl. 411s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 411s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 411s Selecting previously unselected package r-cran-r6. 411s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 411s Unpacking r-cran-r6 (2.5.1-1) ... 411s Selecting previously unselected package r-cran-httr. 411s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 411s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 412s Selecting previously unselected package r-cran-png. 412s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 412s Unpacking r-cran-png (0.1-8-1) ... 412s Selecting previously unselected package r-bioc-zlibbioc. 412s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 412s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 412s Selecting previously unselected package r-bioc-xvector. 412s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 412s Unpacking r-bioc-xvector (0.42.0-1) ... 413s Selecting previously unselected package r-cran-bitops. 413s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 413s Unpacking r-cran-bitops (1.0-7-1) ... 413s Selecting previously unselected package r-cran-rcurl. 413s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 413s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 415s Selecting previously unselected package r-bioc-genomeinfodbdata. 415s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 415s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 415s Selecting previously unselected package r-bioc-genomeinfodb. 415s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 415s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 416s Selecting previously unselected package r-cran-crayon. 416s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 416s Unpacking r-cran-crayon (1.5.2-1) ... 416s Selecting previously unselected package r-bioc-biostrings. 416s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 416s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 418s Selecting previously unselected package r-bioc-keggrest. 418s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 418s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 418s Selecting previously unselected package r-bioc-annotationdbi. 418s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 418s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 419s Selecting previously unselected package r-cran-generics. 419s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 419s Unpacking r-cran-generics (0.1.3-1) ... 419s Selecting previously unselected package r-cran-magrittr. 419s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 419s Unpacking r-cran-magrittr (2.0.3-1) ... 420s Selecting previously unselected package r-cran-fansi. 420s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 420s Unpacking r-cran-fansi (1.0.5-1) ... 420s Selecting previously unselected package r-cran-utf8. 420s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 420s Unpacking r-cran-utf8 (1.2.4-1) ... 420s Selecting previously unselected package r-cran-pillar. 420s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 420s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 421s Selecting previously unselected package r-cran-tibble. 421s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 421s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 421s Selecting previously unselected package r-cran-withr. 421s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 421s Unpacking r-cran-withr (2.5.0-1) ... 422s Selecting previously unselected package r-cran-tidyselect. 422s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 422s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 422s Selecting previously unselected package r-cran-dplyr. 422s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 422s Unpacking r-cran-dplyr (1.1.4-1) ... 423s Selecting previously unselected package r-cran-purrr. 423s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 423s Unpacking r-cran-purrr (1.0.2-1) ... 423s Selecting previously unselected package r-cran-stringi. 423s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 423s Unpacking r-cran-stringi (1.8.3-1) ... 423s Selecting previously unselected package r-cran-stringr. 423s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 423s Unpacking r-cran-stringr (1.5.1-1) ... 424s Selecting previously unselected package r-cran-tidyr. 424s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 424s Unpacking r-cran-tidyr (1.3.1-1) ... 424s Selecting previously unselected package r-cran-dbplyr. 424s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 424s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 425s Selecting previously unselected package r-cran-filelock. 425s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 425s Unpacking r-cran-filelock (1.0.3-1) ... 425s Selecting previously unselected package r-bioc-biocfilecache. 425s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 425s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 425s Selecting previously unselected package r-cran-biocmanager. 425s Preparing to unpack .../204-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 425s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 425s Selecting previously unselected package r-bioc-biocversion. 425s Preparing to unpack .../205-r-bioc-biocversion_3.18.1-1_all.deb ... 425s Unpacking r-bioc-biocversion (3.18.1-1) ... 425s Selecting previously unselected package r-cran-rappdirs. 426s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_arm64.deb ... 426s Unpacking r-cran-rappdirs (0.3.3-1) ... 426s Selecting previously unselected package r-cran-yaml. 426s Preparing to unpack .../207-r-cran-yaml_2.3.8-1_arm64.deb ... 426s Unpacking r-cran-yaml (2.3.8-1) ... 426s Selecting previously unselected package r-cran-littler. 426s Preparing to unpack .../208-r-cran-littler_0.3.19-1_arm64.deb ... 426s Unpacking r-cran-littler (0.3.19-1) ... 426s Selecting previously unselected package r-cran-pkgkitten. 426s Preparing to unpack .../209-r-cran-pkgkitten_0.2.3-1_all.deb ... 426s Unpacking r-cran-pkgkitten (0.2.3-1) ... 426s Selecting previously unselected package r-cran-rcpp. 427s Preparing to unpack .../210-r-cran-rcpp_1.0.12-1_arm64.deb ... 427s Unpacking r-cran-rcpp (1.0.12-1) ... 427s Selecting previously unselected package r-cran-later. 428s Preparing to unpack .../211-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 428s Unpacking r-cran-later (1.3.2+dfsg-1) ... 428s Selecting previously unselected package r-cran-promises. 428s Preparing to unpack .../212-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 428s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 428s Selecting previously unselected package r-cran-httpuv. 428s Preparing to unpack .../213-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 428s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 428s Selecting previously unselected package r-cran-xtable. 428s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 428s Unpacking r-cran-xtable (1:1.8-4-2) ... 428s Selecting previously unselected package r-cran-base64enc. 429s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 429s Unpacking r-cran-base64enc (0.1-3-3) ... 429s Selecting previously unselected package r-cran-digest. 429s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 429s Unpacking r-cran-digest (0.6.34-1) ... 429s Selecting previously unselected package r-cran-ellipsis. 429s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 429s Unpacking r-cran-ellipsis (0.3.2-2) ... 429s Selecting previously unselected package r-cran-htmltools. 429s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 429s Unpacking r-cran-htmltools (0.5.7-1) ... 429s Selecting previously unselected package r-cran-fontawesome. 429s Preparing to unpack .../219-r-cran-fontawesome_0.5.2-1_all.deb ... 429s Unpacking r-cran-fontawesome (0.5.2-1) ... 429s Selecting previously unselected package r-cran-sourcetools. 429s Preparing to unpack .../220-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 429s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 430s Selecting previously unselected package r-cran-commonmark. 430s Preparing to unpack .../221-r-cran-commonmark_1.9.1-1_arm64.deb ... 430s Unpacking r-cran-commonmark (1.9.1-1) ... 430s Selecting previously unselected package r-cran-jquerylib. 430s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 430s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 430s Selecting previously unselected package r-cran-fs. 430s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 430s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 430s Selecting previously unselected package r-cran-sass. 430s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 430s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 431s Selecting previously unselected package r-cran-bslib. 431s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 431s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 432s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 432s Preparing to unpack .../226-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 432s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 432s Selecting previously unselected package r-cran-shiny. 432s Preparing to unpack .../227-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 432s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 433s Selecting previously unselected package r-cran-evaluate. 433s Preparing to unpack .../228-r-cran-evaluate_0.23-1_all.deb ... 433s Unpacking r-cran-evaluate (0.23-1) ... 434s Selecting previously unselected package r-cran-xfun. 434s Preparing to unpack .../229-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 434s Unpacking r-cran-xfun (0.41+dfsg-1) ... 434s Selecting previously unselected package r-cran-highr. 434s Preparing to unpack .../230-r-cran-highr_0.10+dfsg-1_all.deb ... 434s Unpacking r-cran-highr (0.10+dfsg-1) ... 434s Selecting previously unselected package libjs-mathjax. 434s Preparing to unpack .../231-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 434s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 440s Selecting previously unselected package r-cran-knitr. 440s Preparing to unpack .../232-r-cran-knitr_1.45+dfsg-1_all.deb ... 440s Unpacking r-cran-knitr (1.45+dfsg-1) ... 441s Selecting previously unselected package r-cran-tinytex. 441s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 441s Unpacking r-cran-tinytex (0.49-1) ... 441s Selecting previously unselected package libjs-modernizr. 441s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 441s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 441s Selecting previously unselected package r-cran-rmarkdown. 441s Preparing to unpack .../235-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 441s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 442s Selecting previously unselected package r-cran-htmlwidgets. 442s Preparing to unpack .../236-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 442s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 442s Selecting previously unselected package r-cran-lazyeval. 442s Preparing to unpack .../237-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 442s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 442s Selecting previously unselected package r-cran-crosstalk. 442s Preparing to unpack .../238-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 442s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 442s Selecting previously unselected package r-cran-dt. 442s Preparing to unpack .../239-r-cran-dt_0.31+dfsg-1_all.deb ... 442s Unpacking r-cran-dt (0.31+dfsg-1) ... 443s Selecting previously unselected package r-bioc-interactivedisplaybase. 443s Preparing to unpack .../240-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 443s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 443s Selecting previously unselected package r-bioc-annotationhub. 443s Preparing to unpack .../241-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 443s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 443s Selecting previously unselected package r-bioc-biocio. 443s Preparing to unpack .../242-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 443s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 443s Selecting previously unselected package r-cran-formatr. 443s Preparing to unpack .../243-r-cran-formatr_1.14-1_all.deb ... 443s Unpacking r-cran-formatr (1.14-1) ... 443s Selecting previously unselected package r-cran-lambda.r. 443s Preparing to unpack .../244-r-cran-lambda.r_1.2.4-2build1_all.deb ... 443s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 443s Selecting previously unselected package r-cran-futile.options. 444s Preparing to unpack .../245-r-cran-futile.options_1.0.1-3build1_all.deb ... 444s Unpacking r-cran-futile.options (1.0.1-3build1) ... 444s Selecting previously unselected package r-cran-futile.logger. 444s Preparing to unpack .../246-r-cran-futile.logger_1.4.3-4build1_all.deb ... 444s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 444s Selecting previously unselected package r-cran-snow. 444s Preparing to unpack .../247-r-cran-snow_1%3a0.4.4-2_all.deb ... 444s Unpacking r-cran-snow (1:0.4.4-2) ... 444s Selecting previously unselected package r-cran-codetools. 444s Preparing to unpack .../248-r-cran-codetools_0.2-19-1_all.deb ... 444s Unpacking r-cran-codetools (0.2-19-1) ... 444s Selecting previously unselected package r-cran-bh. 444s Preparing to unpack .../249-r-cran-bh_1.84.0-1_all.deb ... 444s Unpacking r-cran-bh (1.84.0-1) ... 444s Selecting previously unselected package r-bioc-biocparallel. 444s Preparing to unpack .../250-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 444s Unpacking r-bioc-biocparallel (1.36.0-1) ... 445s Selecting previously unselected package r-cran-bookdown. 445s Preparing to unpack .../251-r-cran-bookdown_0.37+dfsg-1_all.deb ... 445s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 445s Selecting previously unselected package tex-common. 445s Preparing to unpack .../252-tex-common_6.18_all.deb ... 445s Unpacking tex-common (6.18) ... 446s Selecting previously unselected package t1utils. 446s Preparing to unpack .../253-t1utils_1.41-4build2_arm64.deb ... 446s Unpacking t1utils (1.41-4build2) ... 446s Selecting previously unselected package texlive-binaries. 446s Preparing to unpack .../254-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 446s Unpacking texlive-binaries (2023.20230311.66589-9) ... 448s Selecting previously unselected package texlive-base. 448s Preparing to unpack .../255-texlive-base_2023.20240207-1_all.deb ... 448s Unpacking texlive-base (2023.20240207-1) ... 454s Selecting previously unselected package texlive-latex-base. 454s Preparing to unpack .../256-texlive-latex-base_2023.20240207-1_all.deb ... 454s Unpacking texlive-latex-base (2023.20240207-1) ... 456s Selecting previously unselected package texlive-bibtex-extra. 456s Preparing to unpack .../257-texlive-bibtex-extra_2023.20240207-1_all.deb ... 456s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 468s Selecting previously unselected package r-bioc-biocstyle. 468s Preparing to unpack .../258-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 468s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 468s Selecting previously unselected package r-cran-xml. 468s Preparing to unpack .../259-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 468s Unpacking r-cran-xml (3.99-0.16.1-1) ... 468s Selecting previously unselected package r-cran-hms. 468s Preparing to unpack .../260-r-cran-hms_1.1.3-1_all.deb ... 468s Unpacking r-cran-hms (1.1.3-1) ... 469s Selecting previously unselected package r-cran-prettyunits. 469s Preparing to unpack .../261-r-cran-prettyunits_1.2.0-1_all.deb ... 469s Unpacking r-cran-prettyunits (1.2.0-1) ... 469s Selecting previously unselected package r-cran-progress. 469s Preparing to unpack .../262-r-cran-progress_1.2.3-1_all.deb ... 469s Unpacking r-cran-progress (1.2.3-1) ... 469s Selecting previously unselected package r-cran-xml2. 469s Preparing to unpack .../263-r-cran-xml2_1.3.6-1_arm64.deb ... 469s Unpacking r-cran-xml2 (1.3.6-1) ... 469s Selecting previously unselected package r-bioc-biomart. 469s Preparing to unpack .../264-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 469s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 469s Selecting previously unselected package r-bioc-genomicranges. 470s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 470s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 470s Selecting previously unselected package r-bioc-rhtslib. 470s Preparing to unpack .../266-r-bioc-rhtslib_2.4.1+dfsg-3build1_arm64.deb ... 470s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build1) ... 470s Selecting previously unselected package r-bioc-rsamtools. 470s Preparing to unpack .../267-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 470s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 471s Selecting previously unselected package r-cran-matrixstats. 471s Preparing to unpack .../268-r-cran-matrixstats_1.2.0-1_arm64.deb ... 471s Unpacking r-cran-matrixstats (1.2.0-1) ... 471s Selecting previously unselected package r-bioc-matrixgenerics. 471s Preparing to unpack .../269-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 471s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 471s Selecting previously unselected package r-cran-lattice. 471s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 471s Unpacking r-cran-lattice (0.22-5-1) ... 472s Selecting previously unselected package r-cran-matrix. 472s Preparing to unpack .../271-r-cran-matrix_1.6-5-1_arm64.deb ... 472s Unpacking r-cran-matrix (1.6-5-1) ... 472s Selecting previously unselected package r-cran-abind. 472s Preparing to unpack .../272-r-cran-abind_1.4-5-2_all.deb ... 472s Unpacking r-cran-abind (1.4-5-2) ... 472s Selecting previously unselected package r-bioc-s4arrays. 472s Preparing to unpack .../273-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 472s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 472s Selecting previously unselected package r-bioc-sparsearray. 472s Preparing to unpack .../274-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 472s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 473s Selecting previously unselected package r-bioc-delayedarray. 473s Preparing to unpack .../275-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 473s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 473s Selecting previously unselected package r-bioc-summarizedexperiment. 473s Preparing to unpack .../276-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 473s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 474s Selecting previously unselected package r-bioc-genomicalignments. 474s Preparing to unpack .../277-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 474s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 474s Selecting previously unselected package r-cran-rjson. 474s Preparing to unpack .../278-r-cran-rjson_0.2.21-1_arm64.deb ... 474s Unpacking r-cran-rjson (0.2.21-1) ... 474s Selecting previously unselected package r-cran-restfulr. 474s Preparing to unpack .../279-r-cran-restfulr_0.0.15-1_arm64.deb ... 474s Unpacking r-cran-restfulr (0.0.15-1) ... 474s Selecting previously unselected package r-bioc-rtracklayer. 474s Preparing to unpack .../280-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 474s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 475s Selecting previously unselected package r-bioc-bsgenome. 475s Preparing to unpack .../281-r-bioc-bsgenome_1.70.2-1_all.deb ... 475s Unpacking r-bioc-bsgenome (1.70.2-1) ... 476s Selecting previously unselected package r-bioc-genomicfeatures. 476s Preparing to unpack .../282-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 476s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 476s Selecting previously unselected package r-cran-survival. 476s Preparing to unpack .../283-r-cran-survival_3.5-8-1_arm64.deb ... 476s Unpacking r-cran-survival (3.5-8-1) ... 477s Selecting previously unselected package r-bioc-snpstats. 477s Preparing to unpack .../284-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 477s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 477s Selecting previously unselected package r-bioc-variantannotation. 477s Preparing to unpack .../285-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 477s Unpacking r-bioc-variantannotation (1.48.1-1) ... 478s Selecting previously unselected package r-cran-colorspace. 478s Preparing to unpack .../286-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 478s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 478s Selecting previously unselected package r-cran-farver. 478s Preparing to unpack .../287-r-cran-farver_2.1.1-1_arm64.deb ... 478s Unpacking r-cran-farver (2.1.1-1) ... 478s Selecting previously unselected package r-cran-gtable. 478s Preparing to unpack .../288-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 478s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 479s Selecting previously unselected package r-cran-isoband. 479s Preparing to unpack .../289-r-cran-isoband_0.2.7-1_arm64.deb ... 479s Unpacking r-cran-isoband (0.2.7-1) ... 479s Selecting previously unselected package r-cran-mass. 479s Preparing to unpack .../290-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 479s Unpacking r-cran-mass (7.3-60.0.1-1) ... 479s Selecting previously unselected package r-cran-nlme. 479s Preparing to unpack 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(1.38.6+dfsg-1) ... 502s Setting up r-cran-httr (1.4.7+dfsg-1) ... 502s Setting up r-cran-hms (1.1.3-1) ... 502s Setting up r-cran-scales (1.3.0-1) ... 502s Setting up r-cran-memoise (2.0.1-1) ... 502s Setting up r-cran-promises (1.2.1+dfsg-1) ... 502s Setting up r-cran-purrr (1.0.2-1) ... 502s Setting up r-cran-blob (1.2.4-1) ... 502s Setting up r-cran-htmltools (0.5.7-1) ... 502s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 502s Setting up r-bioc-xvector (0.42.0-1) ... 502s Setting up r-cran-sass (0.4.8+dfsg-1) ... 502s Setting up r-cran-dplyr (1.1.4-1) ... 502s Setting up r-cran-rsqlite (2.3.4-1) ... 502s Setting up r-cran-progress (1.2.3-1) ... 502s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 502s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 502s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 502s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 502s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 502s Setting up r-cran-fontawesome (0.5.2-1) ... 502s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 502s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 502s Setting up r-cran-tidyr (1.3.1-1) ... 502s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 502s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 502s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 502s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 502s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 502s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 502s Setting up r-bioc-annotationdbi (1.64.1-1) ... 502s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 502s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 502s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 502s Setting up r-bioc-genomicalignments (1.38.2-1) ... 502s Setting up r-cran-bookdown (0.37+dfsg-1) ... 502s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 502s Setting up r-bioc-rtracklayer (1.62.0-1) ... 502s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 502s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 503s Setting up r-bioc-bsgenome (1.70.2-1) ... 503s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 503s Setting up r-cran-dt (0.31+dfsg-1) ... 503s Setting up r-bioc-variantannotation (1.48.1-1) ... 503s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 503s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 503s Setting up autopkgtest-satdep (0) ... 503s Processing triggers for man-db (2.12.0-3) ... 506s Processing triggers for install-info (7.1-3) ... 507s Processing triggers for libc-bin (2.39-0ubuntu2) ... 507s Processing triggers for tex-common (6.18) ... 510s Running updmap-sys. This may take some time... done. 511s Running mktexlsr /var/lib/texmf ... done. 511s Building format(s) --all. 644s This may take some time... done. 690s (Reading database ... 127443 files and directories currently installed.) 691s Removing autopkgtest-satdep (0) ... 692s autopkgtest [13:57:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 692s autopkgtest [13:57:27]: test pkg-r-autopkgtest: [----------------------- 692s Test: Try to load the R library VariantAnnotation 693s 693s R version 4.3.2 (2023-10-31) -- "Eye Holes" 693s Copyright (C) 2023 The R Foundation for Statistical Computing 693s Platform: aarch64-unknown-linux-gnu (64-bit) 693s 693s R is free software and comes with ABSOLUTELY NO WARRANTY. 693s You are welcome to redistribute it under certain conditions. 693s Type 'license()' or 'licence()' for distribution details. 693s 693s R is a collaborative project with many contributors. 693s Type 'contributors()' for more information and 693s 'citation()' on how to cite R or R packages in publications. 693s 693s Type 'demo()' for some demos, 'help()' for on-line help, or 693s 'help.start()' for an HTML browser interface to help. 693s Type 'q()' to quit R. 693s 694s > library('VariantAnnotation') 694s Loading required package: BiocGenerics 694s 694s Attaching package: ‘BiocGenerics’ 694s 694s The following objects are masked from ‘package:stats’: 694s 694s IQR, mad, sd, var, xtabs 694s 694s The following objects are masked from ‘package:base’: 694s 694s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 694s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 694s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 694s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 694s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 694s table, tapply, union, unique, unsplit, which.max, which.min 694s 694s Loading required package: MatrixGenerics 694s Loading required package: matrixStats 695s 695s Attaching package: ‘MatrixGenerics’ 695s 695s The following objects are masked from ‘package:matrixStats’: 695s 695s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 695s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 695s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 695s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 695s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 695s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 695s colWeightedMeans, colWeightedMedians, colWeightedSds, 695s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 695s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 695s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 695s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 695s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 695s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 695s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 695s rowWeightedSds, rowWeightedVars 695s 695s Loading required package: GenomeInfoDb 695s Loading required package: S4Vectors 695s Loading required package: stats4 698s 698s Attaching package: ‘S4Vectors’ 698s 698s The following object is masked from ‘package:utils’: 698s 698s findMatches 698s 698s The following objects are masked from ‘package:base’: 698s 698s expand.grid, I, unname 698s 698s Loading required package: IRanges 702s Loading required package: GenomicRanges 704s Loading required package: SummarizedExperiment 704s Loading required package: Biobase 706s Welcome to Bioconductor 706s 706s Vignettes contain introductory material; view with 706s 'browseVignettes()'. To cite Bioconductor, see 706s 'citation("Biobase")', and for packages 'citation("pkgname")'. 706s 706s 706s Attaching package: ‘Biobase’ 706s 706s The following object is masked from ‘package:MatrixGenerics’: 706s 706s rowMedians 706s 706s The following objects are masked from ‘package:matrixStats’: 706s 706s anyMissing, rowMedians 706s 722s Loading required package: Rsamtools 722s Loading required package: Biostrings 722s Loading required package: XVector 725s 725s Attaching package: ‘Biostrings’ 725s 725s The following object is masked from ‘package:base’: 725s 725s strsplit 725s 758s 758s Attaching package: ‘VariantAnnotation’ 758s 758s The following object is masked from ‘package:base’: 758s 758s tabulate 758s 758s > 758s > 759s Other tests are currently unsupported! 759s They will be progressively added. 759s autopkgtest [13:58:34]: test pkg-r-autopkgtest: -----------------------] 760s autopkgtest [13:58:35]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 760s pkg-r-autopkgtest PASS 761s autopkgtest [13:58:36]: @@@@@@@@@@@@@@@@@@@@ summary 761s pkg-r-autopkgtest PASS 786s Creating nova instance adt-noble-arm64-r-bioc-variantannotation-20240316-134555-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...