0s autopkgtest [13:49:05]: starting date and time: 2024-03-16 13:49:05+0000 0s autopkgtest [13:49:05]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:49:05]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9i4co1vp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-22.secgroup --name adt-noble-arm64-r-bioc-variantannotation-20240316-134905-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 94s autopkgtest [13:50:39]: testbed dpkg architecture: arm64 94s autopkgtest [13:50:39]: testbed apt version: 2.7.12 94s autopkgtest [13:50:39]: @@@@@@@@@@@@@@@@@@@@ test bed setup 95s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 96s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 96s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 96s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 98s Fetched 9092 kB in 2s (4763 kB/s) 98s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s The following packages will be REMOVED: 102s libssl3 102s The following NEW packages will be installed: 102s libssl3t64 102s The following packages have been kept back: 102s curl 102s The following packages will be upgraded: 102s openssl ubuntu-minimal ubuntu-standard 102s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 102s Need to get 2775 kB of archives. 102s After this operation, 72.7 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 104s Fetched 2775 kB in 1s (3959 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 104s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 104s wget depends on libssl3 (>= 3.0.0). 104s u-boot-tools depends on libssl3 (>= 3.0.0). 104s tnftp depends on libssl3 (>= 3.0.0). 104s tcpdump depends on libssl3 (>= 3.0.0). 104s systemd-resolved depends on libssl3 (>= 3.0.0). 104s systemd depends on libssl3 (>= 3.0.0). 104s sudo depends on libssl3 (>= 3.0.0). 104s sbsigntool depends on libssl3 (>= 3.0.0). 104s rsync depends on libssl3 (>= 3.0.0). 104s python3-cryptography depends on libssl3 (>= 3.0.0). 104s openssh-server depends on libssl3 (>= 3.0.10). 104s openssh-client depends on libssl3 (>= 3.0.10). 104s mtd-utils depends on libssl3 (>= 3.0.0). 104s mokutil depends on libssl3 (>= 3.0.0). 104s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 104s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 104s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 104s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 104s libnvme1 depends on libssl3 (>= 3.0.0). 104s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 104s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 104s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 104s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 104s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 104s kmod depends on libssl3 (>= 3.0.0). 104s dhcpcd-base depends on libssl3 (>= 3.0.0). 104s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 104s Selecting previously unselected package libssl3t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 104s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 104s Unpacking ubuntu-minimal (1.536) over (1.535) ... 104s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 104s Unpacking ubuntu-standard (1.536) over (1.535) ... 104s Setting up ubuntu-minimal (1.536) ... 104s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Setting up ubuntu-standard (1.536) ... 104s Setting up openssl (3.0.13-0ubuntu1) ... 104s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for libc-bin (2.39-0ubuntu2) ... 105s Reading package lists... 106s Building dependency tree... 106s Reading state information... 106s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 107s sh: Attempting to set up Debian/Ubuntu apt sources automatically 107s sh: Distribution appears to be Ubuntu 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s eatmydata is already the newest version (131-1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s dbus is already the newest version (1.14.10-4ubuntu1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s rng-tools-debian is already the newest version (2.4). 110s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Reading package lists... 111s Building dependency tree... 111s Reading state information... 111s The following packages will be REMOVED: 111s cloud-init* python3-configobj* python3-debconf* 112s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 112s After this operation, 3252 kB disk space will be freed. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 112s Removing cloud-init (24.1.1-0ubuntu1) ... 113s Removing python3-configobj (5.0.8-3) ... 113s Removing python3-debconf (1.5.86) ... 113s Processing triggers for man-db (2.12.0-3) ... 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 113s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 114s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 114s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 114s invoke-rc.d: policy-rc.d denied execution of try-restart. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s linux-generic is already the newest version (6.8.0-11.11+1). 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 115s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 115s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 117s Reading package lists... 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s Calculating upgrade... 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s autopkgtest [13:51:05]: rebooting testbed after setup commands that affected boot 329s autopkgtest [13:54:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 332s autopkgtest [13:54:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 335s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B] 335s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB] 335s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-variantannotation 1.48.1-1 (diff) [7900 B] 335s gpgv: Signature made Fri Dec 1 09:59:29 2023 UTC 335s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 335s gpgv: issuer "tillea@rki.de" 335s gpgv: Can't check signature: No public key 335s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1.dsc: no acceptable signature found 336s autopkgtest [13:54:41]: testing package r-bioc-variantannotation version 1.48.1-1 336s autopkgtest [13:54:41]: build not needed 337s autopkgtest [13:54:42]: test pkg-r-autopkgtest: preparing testbed 338s Reading package lists... 339s Building dependency tree... 339s Reading state information... 339s Starting pkgProblemResolver with broken count: 0 339s Starting 2 pkgProblemResolver with broken count: 0 339s Done 340s The following additional packages will be installed: 340s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 340s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 340s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 340s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 340s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 340s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 340s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 340s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 340s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 340s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 340s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 340s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 340s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 340s libjs-highlight.js libjs-jquery libjs-jquery-datatables 340s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 340s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 340s libjs-popper.js libjs-prettify libjs-sifter.js 340s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 340s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 340s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 340s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 340s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 340s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 340s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 340s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 340s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 340s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 340s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 340s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 340s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 340s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 340s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 340s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 340s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 340s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 340s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 340s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 340s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 340s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 340s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 340s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 340s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 340s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 340s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 340s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 340s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 340s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 340s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 340s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 340s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 340s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 340s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 340s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 340s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 340s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 340s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 340s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 340s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 340s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 340s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 340s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 340s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 340s x11-common xdg-utils zip zlib1g-dev 340s Suggested packages: 340s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 340s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 340s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 340s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 340s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 340s libboost-context1.83-dev libboost-contract1.83-dev 340s libboost-coroutine1.83-dev libboost-date-time1.83-dev 340s libboost-exception1.83-dev libboost-fiber1.83-dev 340s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 340s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 340s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 340s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 340s libboost-numpy1.83-dev libboost-program-options1.83-dev 340s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 340s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 340s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 340s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 340s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 340s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 340s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 340s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 340s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 340s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 340s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 340s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 340s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 340s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 340s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 340s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 340s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 340s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 340s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 340s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 340s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 340s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 340s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 340s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 340s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 340s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 340s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 340s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 340s hintview texlive-latex-base-doc wp2latex 340s Recommended packages: 340s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 340s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 340s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 340s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 340s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 340s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 340s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 340s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 340s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 340s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 340s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 340s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 340s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 340s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 340s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 340s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 340s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 340s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 340s x11-xserver-utils 340s The following NEW packages will be installed: 340s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 340s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 340s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 340s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 340s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 340s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 340s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 340s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 340s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 340s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 340s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 340s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 340s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 340s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 340s libjs-highlight.js libjs-jquery libjs-jquery-datatables 340s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 340s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 340s libjs-popper.js libjs-prettify libjs-sifter.js 340s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 340s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 340s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 340s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 340s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 340s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 340s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 340s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 340s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 340s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 340s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 340s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 340s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 340s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 340s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 340s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 340s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 340s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 340s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 340s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 340s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 340s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 340s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 340s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 340s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 340s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 340s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 340s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 340s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 340s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 340s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 340s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 340s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 340s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 340s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 340s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 340s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 340s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 340s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 340s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 340s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 340s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 340s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 340s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 340s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 340s x11-common xdg-utils zip zlib1g-dev 340s 0 upgraded, 300 newly installed, 0 to remove and 0 not upgraded. 340s Need to get 457 MB/457 MB of archives. 340s After this operation, 1394 MB of additional disk space will be used. 340s Get:1 /tmp/autopkgtest.qODHGi/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B] 340s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 340s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 341s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 341s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 341s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 341s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 341s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 341s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 341s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 341s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 341s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 341s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 341s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 341s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 341s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 341s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 341s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 341s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 341s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 341s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 341s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 341s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 341s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 341s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 342s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 342s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 342s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 342s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 342s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 342s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 342s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 342s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 342s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 342s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 342s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 342s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 342s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 342s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 342s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 342s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 342s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 342s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 342s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 342s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 342s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 342s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 343s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 343s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 343s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 343s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 343s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 343s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 343s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 343s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 343s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 343s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 343s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 343s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 343s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 343s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 343s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 343s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 343s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 343s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 343s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 343s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 343s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 343s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 343s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 343s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 343s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 343s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 343s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 343s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 343s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 343s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 343s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 343s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 343s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 343s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 343s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 343s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 343s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 343s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 343s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 343s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 343s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 343s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 343s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 343s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 343s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 343s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 344s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 344s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 344s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 344s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 344s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 344s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 344s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 344s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 344s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 344s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 344s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 344s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 344s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 344s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 344s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 344s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 344s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 344s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 344s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 344s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 344s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 344s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 344s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 344s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 344s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 344s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 344s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 344s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 344s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 344s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 344s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 344s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 344s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 344s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 344s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 344s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 344s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 344s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 345s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 345s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 345s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 345s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 345s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 345s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 345s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 345s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 345s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 345s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 345s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 345s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 345s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 345s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 345s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 346s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 346s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 346s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 346s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 346s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 346s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 347s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 347s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 347s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 347s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 347s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 347s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 347s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 347s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 347s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 347s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 347s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 347s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 347s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 347s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 347s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 347s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 347s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 347s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 347s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 347s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 347s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 347s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 347s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 347s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 347s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 347s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 347s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 347s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 347s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 347s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 347s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 348s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 348s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 348s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 348s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 348s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 348s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 348s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 348s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 348s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 348s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 348s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 348s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 348s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 348s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 348s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 348s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 348s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 348s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 349s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 349s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 349s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 349s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 349s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 349s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 349s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 349s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 349s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 349s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 349s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 349s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 349s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 349s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 349s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 349s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 349s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 349s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 349s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 350s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 350s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 350s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 350s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 350s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 350s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 350s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 350s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 350s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 350s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 350s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 350s Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 350s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 350s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 350s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 350s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 350s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 350s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 350s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 350s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 351s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 351s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 351s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 351s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 351s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 351s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 351s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 351s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 351s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 351s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 351s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 351s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 351s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 351s Get:254 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 351s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 351s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 352s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 352s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 355s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 355s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 355s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 355s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 355s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 355s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 355s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 355s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 355s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 355s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 355s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 355s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 355s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 355s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 355s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 355s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 355s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 355s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 355s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 355s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 355s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 355s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 355s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 356s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 356s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 356s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 356s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 356s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 357s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 357s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 357s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 357s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 357s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 357s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 357s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 357s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 357s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 357s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 357s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 357s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 357s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 357s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 358s Preconfiguring packages ... 359s Fetched 457 MB in 17s (26.8 MB/s) 359s Selecting previously unselected package libc-dev-bin. 359s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 359s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 359s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 359s Selecting previously unselected package linux-libc-dev:arm64. 359s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 359s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 359s Selecting previously unselected package libcrypt-dev:arm64. 359s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 359s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 359s Selecting previously unselected package libtirpc-dev:arm64. 359s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 359s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 359s Selecting previously unselected package libnsl-dev:arm64. 359s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 359s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 359s Selecting previously unselected package rpcsvc-proto. 359s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 359s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 359s Selecting previously unselected package libc6-dev:arm64. 359s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 359s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 359s Selecting previously unselected package libisl23:arm64. 359s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 359s Unpacking libisl23:arm64 (0.26-3) ... 359s Selecting previously unselected package libmpc3:arm64. 359s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 359s Unpacking libmpc3:arm64 (1.3.1-1) ... 359s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 359s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 359s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 360s Selecting previously unselected package cpp-13. 360s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 360s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 360s Selecting previously unselected package cpp-aarch64-linux-gnu. 360s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 360s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 360s Selecting previously unselected package cpp. 360s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 360s Unpacking cpp (4:13.2.0-7ubuntu1) ... 360s Selecting previously unselected package libcc1-0:arm64. 360s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libgomp1:arm64. 360s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libitm1:arm64. 360s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libatomic1:arm64. 360s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libasan8:arm64. 360s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package liblsan0:arm64. 360s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libtsan2:arm64. 360s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libubsan1:arm64. 360s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libhwasan0:arm64. 360s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 360s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 360s Selecting previously unselected package libgcc-13-dev:arm64. 360s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 360s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 360s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 360s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 360s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package gcc-13. 361s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 361s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package gcc-aarch64-linux-gnu. 361s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package gcc. 361s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking gcc (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package libstdc++-13-dev:arm64. 361s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 361s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package g++-13-aarch64-linux-gnu. 361s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 361s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package g++-13. 361s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 361s Unpacking g++-13 (13.2.0-17ubuntu2) ... 361s Selecting previously unselected package g++-aarch64-linux-gnu. 361s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package g++. 361s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 361s Unpacking g++ (4:13.2.0-7ubuntu1) ... 361s Selecting previously unselected package build-essential. 361s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 361s Unpacking build-essential (12.10ubuntu1) ... 361s Selecting previously unselected package dctrl-tools. 361s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 361s Unpacking dctrl-tools (2.24-3build2) ... 361s Selecting previously unselected package fonts-dejavu-mono. 361s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 361s Unpacking fonts-dejavu-mono (2.37-8) ... 361s Selecting previously unselected package fonts-dejavu-core. 361s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 362s Unpacking fonts-dejavu-core (2.37-8) ... 362s Selecting previously unselected package fontconfig-config. 362s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 362s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 362s Selecting previously unselected package libfontconfig1:arm64. 362s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 362s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 362s Selecting previously unselected package fontconfig. 362s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 362s Unpacking fontconfig (2.15.0-1ubuntu1) ... 362s Selecting previously unselected package fonts-font-awesome. 362s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 362s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 362s Selecting previously unselected package fonts-glyphicons-halflings. 362s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 362s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 362s Selecting previously unselected package fonts-lmodern. 362s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 362s Unpacking fonts-lmodern (2.005-1) ... 362s Selecting previously unselected package fonts-mathjax. 362s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 362s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 362s Selecting previously unselected package libgfortran5:arm64. 362s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 362s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 362s Selecting previously unselected package libgfortran-13-dev:arm64. 362s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 362s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 362s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 362s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 362s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 362s Selecting previously unselected package gfortran-13. 362s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 362s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 362s Selecting previously unselected package gfortran-aarch64-linux-gnu. 363s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 363s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 363s Selecting previously unselected package gfortran. 363s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 363s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 363s Selecting previously unselected package icu-devtools. 363s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 363s Unpacking icu-devtools (74.2-1ubuntu1) ... 363s Selecting previously unselected package javascript-common. 363s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 363s Unpacking javascript-common (11+nmu1) ... 363s Selecting previously unselected package libio-string-perl. 363s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 363s Unpacking libio-string-perl (1.08-4) ... 363s Selecting previously unselected package liblatex-tounicode-perl. 363s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 363s Unpacking liblatex-tounicode-perl (0.54-2) ... 363s Selecting previously unselected package libbibtex-parser-perl. 363s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 363s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 363s Selecting previously unselected package libblas3:arm64. 363s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 363s Unpacking libblas3:arm64 (3.12.0-3) ... 363s Selecting previously unselected package libblas-dev:arm64. 363s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 363s Unpacking libblas-dev:arm64 (3.12.0-3) ... 363s Selecting previously unselected package libboost1.83-dev:arm64. 363s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 363s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 365s Selecting previously unselected package libboost-dev:arm64. 365s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 365s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 365s Selecting previously unselected package libbz2-dev:arm64. 365s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 365s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 365s Selecting previously unselected package libpixman-1-0:arm64. 365s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 365s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 365s Selecting previously unselected package libxcb-render0:arm64. 365s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 365s Unpacking libxcb-render0:arm64 (1.15-1) ... 365s Selecting previously unselected package libxcb-shm0:arm64. 365s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 365s Unpacking libxcb-shm0:arm64 (1.15-1) ... 365s Selecting previously unselected package libxrender1:arm64. 365s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 365s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 365s Selecting previously unselected package libcairo2:arm64. 365s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 365s Unpacking libcairo2:arm64 (1.18.0-1) ... 365s Selecting previously unselected package libdatrie1:arm64. 365s Preparing to unpack .../064-libdatrie1_0.2.13-3_arm64.deb ... 365s Unpacking libdatrie1:arm64 (0.2.13-3) ... 365s Selecting previously unselected package libdeflate0:arm64. 365s Preparing to unpack .../065-libdeflate0_1.19-1_arm64.deb ... 365s Unpacking libdeflate0:arm64 (1.19-1) ... 365s Selecting previously unselected package libgraphite2-3:arm64. 365s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 365s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 365s Selecting previously unselected package libharfbuzz0b:arm64. 365s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 365s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 365s Selecting previously unselected package x11-common. 365s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 365s Unpacking x11-common (1:7.7+23ubuntu2) ... 365s Selecting previously unselected package libice6:arm64. 365s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 365s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 365s Selecting previously unselected package libicu-dev:arm64. 365s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 365s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 365s Selecting previously unselected package libjpeg-turbo8:arm64. 365s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 365s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 365s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 365s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 365s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 365s Selecting previously unselected package libjpeg8:arm64. 365s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 365s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 365s Selecting previously unselected package libjpeg8-dev:arm64. 365s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 365s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 365s Selecting previously unselected package libjpeg-dev:arm64. 365s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 365s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 365s Selecting previously unselected package libjs-bootstrap. 365s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 365s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 365s Selecting previously unselected package libjs-popper.js. 365s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 366s Unpacking libjs-popper.js (1.16.1+ds-6) ... 366s Selecting previously unselected package libjs-bootstrap4. 366s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 366s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 366s Selecting previously unselected package libjs-d3. 366s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 366s Unpacking libjs-d3 (3.5.17-4) ... 366s Selecting previously unselected package libjs-es5-shim. 366s Preparing to unpack .../080-libjs-es5-shim_4.6.7-2_all.deb ... 366s Unpacking libjs-es5-shim (4.6.7-2) ... 366s Selecting previously unselected package libjs-highlight.js. 366s Preparing to unpack .../081-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 366s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 366s Selecting previously unselected package libjs-jquery. 366s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 366s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 366s Selecting previously unselected package libjs-jquery-datatables. 366s Preparing to unpack .../083-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 366s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 366s Selecting previously unselected package libjs-jquery-datatables-extensions. 366s Preparing to unpack .../084-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 366s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 366s Selecting previously unselected package libjs-sifter.js. 366s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 366s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 366s Selecting previously unselected package libjs-microplugin.js. 366s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 366s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 366s Selecting previously unselected package libjs-jquery-selectize.js. 366s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 366s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 366s Selecting previously unselected package libjs-jquery-ui. 366s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 366s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 366s Selecting previously unselected package libjs-json. 366s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 366s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 366s Selecting previously unselected package libjs-lunr. 366s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 366s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 366s Selecting previously unselected package libjs-prettify. 366s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 366s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 366s Selecting previously unselected package libkpathsea6:arm64. 366s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 366s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 366s Selecting previously unselected package liblapack3:arm64. 366s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 366s Unpacking liblapack3:arm64 (3.12.0-3) ... 366s Selecting previously unselected package liblapack-dev:arm64. 366s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 366s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 367s Selecting previously unselected package liblerc4:arm64. 367s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 367s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 367s Selecting previously unselected package liblua5.4-0:arm64. 367s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 367s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 367s Selecting previously unselected package libncurses-dev:arm64. 367s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 367s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 367s Selecting previously unselected package libthai-data. 367s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 367s Unpacking libthai-data (0.1.29-2) ... 367s Selecting previously unselected package libthai0:arm64. 367s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 367s Unpacking libthai0:arm64 (0.1.29-2) ... 367s Selecting previously unselected package libpango-1.0-0:arm64. 367s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 367s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 367s Selecting previously unselected package libpangoft2-1.0-0:arm64. 367s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 367s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 367s Selecting previously unselected package libpangocairo-1.0-0:arm64. 367s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 367s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 367s Selecting previously unselected package libpaper1:arm64. 367s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 367s Unpacking libpaper1:arm64 (1.1.29) ... 367s Selecting previously unselected package libpaper-utils. 367s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 367s Unpacking libpaper-utils (1.1.29) ... 367s Selecting previously unselected package libpcre2-16-0:arm64. 367s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 367s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 367s 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unselected package libpng-dev:arm64. 367s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 367s Unpacking libpng-dev:arm64 (1.6.43-1) ... 367s Selecting previously unselected package libpotrace0:arm64. 367s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 367s Unpacking libpotrace0:arm64 (1.16-2) ... 367s Selecting previously unselected package libptexenc1:arm64. 367s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 367s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 367s Selecting previously unselected package libreadline-dev:arm64. 367s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 367s Unpacking libreadline-dev:arm64 (8.2-3) ... 367s Selecting previously unselected package libsharpyuv0:arm64. 367s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 367s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 367s Selecting previously unselected package libsm6:arm64. 367s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 367s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 367s Selecting previously unselected package libsynctex2:arm64. 367s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 367s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 367s Selecting previously unselected package libtcl8.6:arm64. 367s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 367s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 368s Selecting previously unselected package libteckit0:arm64. 368s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 368s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 368s Selecting previously unselected package libtexlua53-5:arm64. 368s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 368s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 368s Selecting previously unselected package libjbig0:arm64. 368s Preparing to unpack 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368s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 368s Selecting previously unselected package node-bootstrap-sass. 368s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 368s Unpacking node-bootstrap-sass (3.4.3-2) ... 368s Selecting previously unselected package node-html5shiv. 368s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 368s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 368s Selecting previously unselected package node-normalize.css. 368s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 368s Unpacking node-normalize.css (8.0.1-5) ... 368s Selecting previously unselected package pandoc-data. 368s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 368s Unpacking pandoc-data (3.1.3-1) ... 368s Selecting previously unselected package pandoc. 368s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 368s Unpacking pandoc (3.1.3+ds-2) ... 369s Selecting previously unselected package pkgconf-bin. 369s 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unpack .../144-r-base-core_4.3.2-1build1_arm64.deb ... 369s Unpacking r-base-core (4.3.2-1build1) ... 370s Selecting previously unselected package liblzma-dev:arm64. 370s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 370s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 370s Selecting previously unselected package r-base-dev. 370s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 370s Unpacking r-base-dev (4.3.2-1build1) ... 370s Selecting previously unselected package pkg-r-autopkgtest. 370s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 370s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 370s Selecting previously unselected package r-bioc-biocgenerics. 370s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 370s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 370s Selecting previously unselected package r-bioc-biobase. 370s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 370s Unpacking r-bioc-biobase (2.62.0-1) ... 370s Selecting previously unselected package r-bioc-s4vectors. 370s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 370s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 370s Selecting previously unselected package r-bioc-iranges. 370s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 370s Unpacking r-bioc-iranges (2.36.0-1) ... 370s Selecting previously unselected package r-cran-dbi. 370s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 370s Unpacking r-cran-dbi (1.2.2-1) ... 370s Selecting previously unselected package r-cran-bit. 370s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 370s Unpacking r-cran-bit (4.0.5-1) ... 370s Selecting previously unselected package r-cran-bit64. 370s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 370s Unpacking r-cran-bit64 (4.0.5-1) ... 370s Selecting previously unselected package r-cran-rlang. 370s Preparing to unpack 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Selecting previously unselected package r-cran-rsqlite. 371s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 371s Unpacking r-cran-rsqlite (2.3.4-1) ... 371s Selecting previously unselected package r-cran-curl. 371s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 371s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 371s Selecting previously unselected package r-cran-jsonlite. 371s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 371s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 371s Selecting previously unselected package r-cran-mime. 371s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 371s Unpacking r-cran-mime (0.12-1) ... 371s Selecting previously unselected package r-cran-sys. 371s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 371s Unpacking r-cran-sys (3.4.2-1) ... 371s Selecting previously unselected package r-cran-askpass. 371s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 371s Unpacking r-cran-askpass (1.2.0-1) ... 371s Selecting previously unselected package r-cran-openssl. 371s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 371s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 371s Selecting previously unselected package r-cran-r6. 371s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 371s Unpacking r-cran-r6 (2.5.1-1) ... 371s Selecting previously unselected package r-cran-httr. 371s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 371s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 371s Selecting previously unselected package r-cran-png. 371s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 371s Unpacking r-cran-png (0.1-8-1) ... 371s Selecting previously unselected package r-bioc-zlibbioc. 371s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 371s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 371s Selecting previously unselected package r-bioc-xvector. 371s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 371s Unpacking r-bioc-xvector (0.42.0-1) ... 371s Selecting previously unselected package r-cran-bitops. 371s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 371s Unpacking r-cran-bitops (1.0-7-1) ... 371s Selecting previously unselected package r-cran-rcurl. 371s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 371s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 371s Selecting previously unselected package r-bioc-genomeinfodbdata. 371s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 371s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 371s Selecting previously unselected package r-bioc-genomeinfodb. 371s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 371s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 372s Selecting previously unselected package r-cran-crayon. 372s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 372s Unpacking r-cran-crayon (1.5.2-1) ... 372s Selecting previously unselected package r-bioc-biostrings. 372s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 372s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 372s Selecting previously unselected package r-bioc-keggrest. 372s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 372s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 372s Selecting previously unselected package r-bioc-annotationdbi. 372s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 372s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 372s Selecting previously unselected package r-cran-generics. 372s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 372s Unpacking r-cran-generics (0.1.3-1) ... 372s Selecting previously unselected package r-cran-magrittr. 372s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 372s Unpacking r-cran-magrittr (2.0.3-1) ... 372s Selecting previously unselected package r-cran-fansi. 372s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_arm64.deb ... 372s Unpacking r-cran-fansi (1.0.5-1) ... 372s Selecting previously unselected package r-cran-utf8. 372s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ... 372s Unpacking r-cran-utf8 (1.2.4-1) ... 372s Selecting previously unselected package r-cran-pillar. 372s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 372s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 372s Selecting previously unselected package r-cran-tibble. 372s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 372s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 372s Selecting previously unselected package r-cran-withr. 372s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 372s Unpacking r-cran-withr (2.5.0-1) ... 372s Selecting previously unselected package r-cran-tidyselect. 372s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 372s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 372s Selecting previously unselected package r-cran-dplyr. 372s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ... 372s Unpacking r-cran-dplyr (1.1.4-1) ... 372s Selecting previously unselected package r-cran-purrr. 372s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ... 372s Unpacking r-cran-purrr (1.0.2-1) ... 372s Selecting previously unselected package r-cran-stringi. 372s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_arm64.deb ... 372s Unpacking r-cran-stringi (1.8.3-1) ... 372s Selecting previously unselected package r-cran-stringr. 372s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 372s Unpacking r-cran-stringr (1.5.1-1) ... 372s Selecting previously unselected package r-cran-tidyr. 372s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 372s Unpacking r-cran-tidyr (1.3.1-1) ... 372s Selecting previously unselected package r-cran-dbplyr. 372s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 372s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 372s Selecting previously unselected package r-cran-filelock. 373s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 373s Unpacking r-cran-filelock (1.0.3-1) ... 373s Selecting previously unselected package r-bioc-biocfilecache. 373s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 373s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 373s Selecting previously unselected package r-cran-biocmanager. 373s Preparing to unpack .../203-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 373s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 373s Selecting previously unselected package r-bioc-biocversion. 373s Preparing to unpack .../204-r-bioc-biocversion_3.18.1-1_all.deb ... 373s Unpacking r-bioc-biocversion (3.18.1-1) ... 373s Selecting previously unselected package r-cran-rappdirs. 373s Preparing to unpack .../205-r-cran-rappdirs_0.3.3-1_arm64.deb ... 373s Unpacking r-cran-rappdirs (0.3.3-1) ... 373s Selecting previously unselected package r-cran-yaml. 373s Preparing to unpack .../206-r-cran-yaml_2.3.8-1_arm64.deb ... 373s Unpacking r-cran-yaml (2.3.8-1) ... 373s Selecting previously unselected package r-cran-littler. 373s Preparing to unpack .../207-r-cran-littler_0.3.19-1_arm64.deb ... 373s Unpacking r-cran-littler (0.3.19-1) ... 373s Selecting previously unselected package r-cran-pkgkitten. 373s Preparing to unpack .../208-r-cran-pkgkitten_0.2.3-1_all.deb ... 373s Unpacking r-cran-pkgkitten (0.2.3-1) ... 373s Selecting previously unselected package r-cran-rcpp. 373s Preparing to unpack .../209-r-cran-rcpp_1.0.12-1_arm64.deb ... 373s Unpacking r-cran-rcpp (1.0.12-1) ... 373s Selecting previously unselected package r-cran-later. 373s Preparing to unpack .../210-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 373s Unpacking r-cran-later (1.3.2+dfsg-1) ... 373s Selecting previously unselected package r-cran-promises. 373s Preparing to unpack .../211-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 373s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 373s Selecting previously unselected package r-cran-httpuv. 373s Preparing to unpack .../212-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 373s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 373s Selecting previously unselected package r-cran-xtable. 373s Preparing to unpack .../213-r-cran-xtable_1%3a1.8-4-2_all.deb ... 373s Unpacking r-cran-xtable (1:1.8-4-2) ... 373s Selecting previously unselected package r-cran-base64enc. 373s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 373s Unpacking r-cran-base64enc (0.1-3-3) ... 373s Selecting previously unselected package r-cran-digest. 373s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 373s Unpacking r-cran-digest (0.6.34-1) ... 373s Selecting previously unselected package r-cran-ellipsis. 373s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 373s Unpacking r-cran-ellipsis (0.3.2-2) ... 373s Selecting previously unselected package r-cran-htmltools. 373s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 373s Unpacking r-cran-htmltools (0.5.7-1) ... 373s Selecting previously unselected package r-cran-fontawesome. 374s Preparing to unpack .../218-r-cran-fontawesome_0.5.2-1_all.deb ... 374s Unpacking r-cran-fontawesome (0.5.2-1) ... 374s Selecting previously unselected package r-cran-sourcetools. 374s Preparing to unpack .../219-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 374s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 374s Selecting previously unselected package r-cran-commonmark. 374s Preparing to unpack .../220-r-cran-commonmark_1.9.1-1_arm64.deb ... 374s Unpacking r-cran-commonmark (1.9.1-1) ... 374s Selecting previously unselected package r-cran-jquerylib. 374s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 374s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 374s Selecting previously unselected package r-cran-fs. 374s Preparing to unpack .../222-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 374s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 374s Selecting previously unselected package r-cran-sass. 374s Preparing to unpack .../223-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 374s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 374s Selecting previously unselected package r-cran-bslib. 374s Preparing to unpack .../224-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 374s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 374s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 374s Preparing to unpack .../225-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 374s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 374s Selecting previously unselected package r-cran-shiny. 374s Preparing to unpack .../226-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 374s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 374s Selecting previously unselected package r-cran-evaluate. 374s Preparing to unpack .../227-r-cran-evaluate_0.23-1_all.deb ... 374s Unpacking r-cran-evaluate (0.23-1) ... 374s Selecting previously unselected package r-cran-xfun. 374s Preparing to unpack .../228-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 374s Unpacking r-cran-xfun (0.41+dfsg-1) ... 374s Selecting previously unselected package r-cran-highr. 374s Preparing to unpack .../229-r-cran-highr_0.10+dfsg-1_all.deb ... 374s Unpacking r-cran-highr (0.10+dfsg-1) ... 374s Selecting previously unselected package libjs-mathjax. 374s Preparing to unpack .../230-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 374s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 375s Selecting previously unselected package r-cran-knitr. 375s Preparing to unpack .../231-r-cran-knitr_1.45+dfsg-1_all.deb ... 375s Unpacking r-cran-knitr (1.45+dfsg-1) ... 375s Selecting previously unselected package r-cran-tinytex. 375s Preparing to unpack .../232-r-cran-tinytex_0.49-1_all.deb ... 375s Unpacking r-cran-tinytex (0.49-1) ... 375s Selecting previously unselected package libjs-modernizr. 375s Preparing to unpack .../233-libjs-modernizr_2.6.2+ds1-5_all.deb ... 375s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 375s Selecting previously unselected package r-cran-rmarkdown. 375s Preparing to unpack .../234-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 375s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 375s Selecting previously unselected package r-cran-htmlwidgets. 375s Preparing to unpack .../235-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 375s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 375s Selecting previously unselected package r-cran-lazyeval. 375s Preparing to unpack .../236-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 375s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 375s Selecting previously unselected package r-cran-crosstalk. 375s Preparing to unpack .../237-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 375s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 375s Selecting previously unselected package r-cran-dt. 375s Preparing to unpack .../238-r-cran-dt_0.31+dfsg-1_all.deb ... 375s Unpacking r-cran-dt (0.31+dfsg-1) ... 375s Selecting previously unselected package r-bioc-interactivedisplaybase. 375s Preparing to unpack .../239-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 375s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 375s Selecting previously unselected package r-bioc-annotationhub. 375s Preparing to unpack .../240-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 375s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 375s Selecting previously unselected package r-bioc-biocio. 375s Preparing to unpack .../241-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 375s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 375s Selecting previously unselected package r-cran-formatr. 376s Preparing to unpack .../242-r-cran-formatr_1.14-1_all.deb ... 376s Unpacking r-cran-formatr (1.14-1) ... 376s Selecting previously unselected package r-cran-lambda.r. 376s Preparing to unpack .../243-r-cran-lambda.r_1.2.4-2build1_all.deb ... 376s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 376s Selecting previously unselected package r-cran-futile.options. 376s Preparing to unpack .../244-r-cran-futile.options_1.0.1-3build1_all.deb ... 376s Unpacking r-cran-futile.options (1.0.1-3build1) ... 376s Selecting previously unselected package r-cran-futile.logger. 376s Preparing to unpack .../245-r-cran-futile.logger_1.4.3-4build1_all.deb ... 376s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 376s Selecting previously unselected package r-cran-snow. 376s Preparing to unpack .../246-r-cran-snow_1%3a0.4.4-2_all.deb ... 376s Unpacking r-cran-snow (1:0.4.4-2) ... 376s Selecting previously unselected package r-cran-codetools. 376s Preparing to unpack .../247-r-cran-codetools_0.2-19-1_all.deb ... 376s Unpacking r-cran-codetools (0.2-19-1) ... 376s Selecting previously unselected package r-cran-bh. 376s Preparing to unpack .../248-r-cran-bh_1.84.0-1_all.deb ... 376s Unpacking r-cran-bh (1.84.0-1) ... 376s Selecting previously unselected package r-bioc-biocparallel. 376s Preparing to unpack .../249-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 376s Unpacking r-bioc-biocparallel (1.36.0-1) ... 376s Selecting previously unselected package r-cran-bookdown. 376s Preparing to unpack .../250-r-cran-bookdown_0.37+dfsg-1_all.deb ... 376s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 376s Selecting previously unselected package tex-common. 376s Preparing to unpack .../251-tex-common_6.18_all.deb ... 376s Unpacking tex-common (6.18) ... 376s Selecting previously unselected package t1utils. 376s Preparing to unpack .../252-t1utils_1.41-4build2_arm64.deb ... 376s Unpacking t1utils (1.41-4build2) ... 376s Selecting previously unselected package texlive-binaries. 376s Preparing to unpack .../253-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 376s Unpacking texlive-binaries (2023.20230311.66589-9) ... 376s Selecting previously unselected package texlive-base. 376s Preparing to unpack .../254-texlive-base_2023.20240207-1_all.deb ... 376s Unpacking texlive-base (2023.20240207-1) ... 377s Selecting previously unselected package texlive-latex-base. 377s Preparing to unpack .../255-texlive-latex-base_2023.20240207-1_all.deb ... 377s Unpacking texlive-latex-base (2023.20240207-1) ... 377s Selecting previously unselected package texlive-bibtex-extra. 377s Preparing to unpack .../256-texlive-bibtex-extra_2023.20240207-1_all.deb ... 377s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 379s Selecting previously unselected package r-bioc-biocstyle. 379s Preparing to unpack .../257-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 379s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 379s Selecting previously unselected package r-cran-xml. 379s Preparing to unpack .../258-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 379s Unpacking r-cran-xml (3.99-0.16.1-1) ... 379s Selecting previously unselected package r-cran-hms. 379s Preparing to unpack .../259-r-cran-hms_1.1.3-1_all.deb ... 379s Unpacking r-cran-hms (1.1.3-1) ... 379s Selecting previously unselected package r-cran-prettyunits. 379s Preparing to unpack .../260-r-cran-prettyunits_1.2.0-1_all.deb ... 379s Unpacking r-cran-prettyunits (1.2.0-1) ... 379s Selecting previously unselected package r-cran-progress. 379s Preparing to unpack .../261-r-cran-progress_1.2.3-1_all.deb ... 379s Unpacking r-cran-progress (1.2.3-1) ... 379s Selecting previously unselected package r-cran-xml2. 379s Preparing to unpack .../262-r-cran-xml2_1.3.6-1_arm64.deb ... 379s Unpacking r-cran-xml2 (1.3.6-1) ... 379s Selecting previously unselected package r-bioc-biomart. 379s Preparing to unpack .../263-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 379s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 379s Selecting previously unselected package r-bioc-genomicranges. 379s Preparing to unpack .../264-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 379s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 379s Selecting previously unselected package r-bioc-rhtslib. 380s Preparing to unpack .../265-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 380s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 380s Selecting previously unselected package r-bioc-rsamtools. 380s Preparing to unpack .../266-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 380s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 380s Selecting previously unselected package r-cran-matrixstats. 380s Preparing to unpack .../267-r-cran-matrixstats_1.2.0-1_arm64.deb ... 380s Unpacking r-cran-matrixstats (1.2.0-1) ... 380s Selecting previously unselected package r-bioc-matrixgenerics. 380s Preparing to unpack .../268-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 380s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 380s Selecting previously unselected package r-cran-lattice. 380s Preparing to unpack .../269-r-cran-lattice_0.22-5-1_arm64.deb ... 380s Unpacking r-cran-lattice (0.22-5-1) ... 380s Selecting previously unselected package r-cran-matrix. 380s Preparing to unpack .../270-r-cran-matrix_1.6-5-1_arm64.deb ... 380s Unpacking r-cran-matrix (1.6-5-1) ... 380s Selecting previously unselected package r-cran-abind. 380s Preparing to unpack .../271-r-cran-abind_1.4-5-2_all.deb ... 380s Unpacking r-cran-abind (1.4-5-2) ... 380s Selecting previously unselected package r-bioc-s4arrays. 380s Preparing to unpack .../272-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 380s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-sparsearray. 380s Preparing to unpack .../273-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 380s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 380s Selecting previously unselected package r-bioc-delayedarray. 380s Preparing to unpack .../274-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 380s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-summarizedexperiment. 380s Preparing to unpack .../275-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 380s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-genomicalignments. 380s Preparing to unpack .../276-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 380s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 380s Selecting previously unselected package r-cran-rjson. 380s Preparing to unpack .../277-r-cran-rjson_0.2.21-1_arm64.deb ... 380s Unpacking r-cran-rjson (0.2.21-1) ... 380s Selecting previously unselected package r-cran-restfulr. 380s Preparing to unpack .../278-r-cran-restfulr_0.0.15-1_arm64.deb ... 380s Unpacking r-cran-restfulr (0.0.15-1) ... 380s Selecting previously unselected package r-bioc-rtracklayer. 380s Preparing to unpack .../279-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 380s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 380s Selecting previously unselected package r-bioc-bsgenome. 380s Preparing to unpack .../280-r-bioc-bsgenome_1.70.2-1_all.deb ... 380s Unpacking r-bioc-bsgenome (1.70.2-1) ... 381s Selecting previously unselected package r-bioc-genomicfeatures. 381s Preparing to unpack .../281-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 381s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-survival. 381s Preparing to unpack .../282-r-cran-survival_3.5-8-1_arm64.deb ... 381s Unpacking r-cran-survival (3.5-8-1) ... 381s Selecting previously unselected package r-bioc-snpstats. 381s Preparing to unpack .../283-r-bioc-snpstats_1.52.0+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-snpstats (1.52.0+dfsg-1) ... 381s Selecting previously unselected package r-bioc-variantannotation. 381s Preparing to unpack .../284-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 381s Unpacking r-bioc-variantannotation (1.48.1-1) ... 381s Selecting previously unselected package r-cran-colorspace. 381s Preparing to unpack .../285-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 381s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 381s Selecting previously unselected package r-cran-farver. 381s 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(bibtex) in auto mode 386s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 386s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 386s Setting up r-cran-lazyeval (0.2.2-1build1) ... 386s Setting up r-cran-commonmark (1.9.1-1) ... 386s Setting up r-cran-r6 (2.5.1-1) ... 386s Setting up r-cran-pkgkitten (0.2.3-1) ... 386s Setting up texlive-base (2023.20240207-1) ... 386s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 386s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 387s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 387s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 387s Setting up r-cran-magrittr (2.0.3-1) ... 387s Setting up r-cran-rappdirs (0.3.3-1) ... 387s Setting up r-cran-filelock (1.0.3-1) ... 387s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 387s Setting up r-cran-littler 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exist 387s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 387s Setting up r-cran-bitops (1.0-7-1) ... 387s Setting up r-bioc-biocversion (3.18.1-1) ... 387s Setting up r-cran-bit64 (4.0.5-1) ... 387s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 387s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 387s Setting up r-cran-askpass (1.2.0-1) ... 387s Setting up r-cran-fastmap (1.1.1-1) ... 387s Setting up r-cran-png (0.1-8-1) ... 387s Setting up r-bioc-biobase (2.62.0-1) ... 387s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 387s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 387s Setting up r-cran-utf8 (1.2.4-1) ... 387s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 387s Setting up r-cran-stringi (1.8.3-1) ... 387s Setting up texlive-latex-base (2023.20240207-1) ... 387s Setting up r-cran-cpp11 (0.4.7-1) ... 387s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 387s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 387s Setting up r-cran-isoband (0.2.7-1) ... 387s Setting up r-cran-runit (0.4.32-3) ... 387s Setting up r-cran-futile.logger (1.4.3-4build1) ... 387s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 387s Setting up r-cran-later (1.3.2+dfsg-1) ... 387s Setting up r-cran-matrix (1.6-5-1) ... 387s Setting up r-cran-tinytex (0.49-1) ... 387s Setting up r-cran-knitr (1.45+dfsg-1) ... 387s Setting up r-cran-mgcv (1.9-1-1) ... 387s Setting up g++ (4:13.2.0-7ubuntu1) ... 387s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 387s Setting up r-cran-cachem (1.0.8-1) ... 387s Setting up build-essential (12.10ubuntu1) ... 387s Setting up r-bioc-iranges (2.36.0-1) ... 387s Setting up r-cran-rjson (0.2.21-1) ... 387s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 387s Setting up r-cran-restfulr (0.0.15-1) ... 387s Setting up r-cran-vctrs (0.6.5-1) ... 387s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 387s Setting up r-cran-ellipsis (0.3.2-2) ... 387s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 387s Setting up r-base-dev (4.3.2-1build1) ... 387s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 387s Setting up r-cran-stringr (1.5.1-1) ... 387s Setting up r-bioc-biocparallel (1.36.0-1) ... 387s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 387s Setting up r-cran-xml2 (1.3.6-1) ... 387s Setting up r-cran-munsell (0.5.0-2build1) ... 387s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 387s Setting up r-cran-survival (3.5-8-1) ... 387s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 387s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 387s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 387s Setting up texlive-bibtex-extra (2023.20240207-1) ... 387s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 387s Setting up r-cran-httr (1.4.7+dfsg-1) ... 387s Setting up r-cran-hms (1.1.3-1) ... 387s Setting up r-cran-scales (1.3.0-1) ... 387s Setting up r-cran-memoise (2.0.1-1) ... 387s Setting up r-cran-promises (1.2.1+dfsg-1) ... 387s Setting up r-cran-purrr (1.0.2-1) ... 387s Setting up r-cran-blob (1.2.4-1) ... 387s Setting up r-cran-htmltools (0.5.7-1) ... 387s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 387s Setting up r-bioc-xvector (0.42.0-1) ... 387s Setting up r-cran-sass (0.4.8+dfsg-1) ... 387s Setting up r-cran-dplyr (1.1.4-1) ... 387s Setting up r-cran-rsqlite (2.3.4-1) ... 388s Setting up r-cran-progress (1.2.3-1) ... 388s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 388s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 388s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 388s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 388s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 388s Setting up r-cran-fontawesome (0.5.2-1) ... 388s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 388s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 388s Setting up r-cran-tidyr (1.3.1-1) ... 388s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 388s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 388s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 388s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 388s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 388s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 388s Setting up r-bioc-annotationdbi (1.64.1-1) ... 388s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 388s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 388s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 388s Setting up r-bioc-genomicalignments (1.38.2-1) ... 388s Setting up r-cran-bookdown (0.37+dfsg-1) ... 388s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 388s Setting up r-bioc-rtracklayer (1.62.0-1) ... 388s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 388s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 388s Setting up r-bioc-bsgenome (1.70.2-1) ... 388s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 388s Setting up r-cran-dt (0.31+dfsg-1) ... 388s Setting up r-bioc-variantannotation (1.48.1-1) ... 388s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 388s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 388s Setting up autopkgtest-satdep (0) ... 388s Processing triggers for man-db (2.12.0-3) ... 389s Processing triggers for install-info (7.1-3) ... 389s Processing triggers for libc-bin (2.39-0ubuntu2) ... 389s Processing triggers for tex-common (6.18) ... 389s Running updmap-sys. This may take some time... done. 389s Running mktexlsr /var/lib/texmf ... done. 389s Building format(s) --all. 425s This may take some time... done. 440s (Reading database ... 125905 files and directories currently installed.) 440s Removing autopkgtest-satdep (0) ... 441s autopkgtest [13:56:26]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 441s autopkgtest [13:56:26]: test pkg-r-autopkgtest: [----------------------- 441s Test: Try to load the R library VariantAnnotation 442s 442s R version 4.3.2 (2023-10-31) -- "Eye Holes" 442s Copyright (C) 2023 The R Foundation for Statistical Computing 442s Platform: aarch64-unknown-linux-gnu (64-bit) 442s 442s R is free software and comes with ABSOLUTELY NO WARRANTY. 442s You are welcome to redistribute it under certain conditions. 442s Type 'license()' or 'licence()' for distribution details. 442s 442s R is a collaborative project with many contributors. 442s Type 'contributors()' for more information and 442s 'citation()' on how to cite R or R packages in publications. 442s 442s Type 'demo()' for some demos, 'help()' for on-line help, or 442s 'help.start()' for an HTML browser interface to help. 442s Type 'q()' to quit R. 442s 442s > library('VariantAnnotation') 442s Loading required package: BiocGenerics 442s 442s Attaching package: ‘BiocGenerics’ 442s 442s The following objects are masked from ‘package:stats’: 442s 442s IQR, mad, sd, var, xtabs 442s 442s The following objects are masked from ‘package:base’: 442s 442s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 442s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 442s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 442s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 442s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 442s table, tapply, union, unique, unsplit, which.max, which.min 442s 442s Loading required package: MatrixGenerics 442s Loading required package: matrixStats 442s 442s Attaching package: ‘MatrixGenerics’ 442s 442s The following objects are masked from ‘package:matrixStats’: 442s 442s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 442s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 442s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 442s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 442s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 442s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 442s colWeightedMeans, colWeightedMedians, colWeightedSds, 442s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 442s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 442s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 442s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 442s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 442s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 442s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 442s rowWeightedSds, rowWeightedVars 442s 442s Loading required package: GenomeInfoDb 442s Loading required package: S4Vectors 442s Loading required package: stats4 443s 443s Attaching package: ‘S4Vectors’ 443s 443s The following object is masked from ‘package:utils’: 443s 443s findMatches 443s 443s The following objects are masked from ‘package:base’: 443s 443s expand.grid, I, unname 443s 443s Loading required package: IRanges 444s Loading required package: GenomicRanges 445s Loading required package: SummarizedExperiment 445s Loading required package: Biobase 445s Welcome to Bioconductor 445s 445s Vignettes contain introductory material; view with 445s 'browseVignettes()'. To cite Bioconductor, see 445s 'citation("Biobase")', and for packages 'citation("pkgname")'. 445s 445s 445s Attaching package: ‘Biobase’ 445s 445s The following object is masked from ‘package:MatrixGenerics’: 445s 445s rowMedians 445s 445s The following objects are masked from ‘package:matrixStats’: 445s 445s anyMissing, rowMedians 445s 448s Loading required package: Rsamtools 448s Loading required package: Biostrings 448s Loading required package: XVector 448s 448s Attaching package: ‘Biostrings’ 448s 448s The following object is masked from ‘package:base’: 448s 448s strsplit 448s 454s > 454s > 454s 454s Attaching package: ‘VariantAnnotation’ 454s 454s The following object is masked from ‘package:base’: 454s 454s tabulate 454s 454s Other tests are currently unsupported! 454s They will be progressively added. 454s autopkgtest [13:56:39]: test pkg-r-autopkgtest: -----------------------] 455s pkg-r-autopkgtest PASS 455s autopkgtest [13:56:40]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 455s autopkgtest [13:56:40]: @@@@@@@@@@@@@@@@@@@@ summary 455s pkg-r-autopkgtest PASS 466s Creating nova instance adt-noble-arm64-r-bioc-variantannotation-20240316-134905-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...