0s autopkgtest [13:51:36]: starting date and time: 2024-03-16 13:51:36+0000 0s autopkgtest [13:51:36]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:51:36]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ed6pc8u1/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-variantannotation --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-variantannotation-20240316-135136-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 73s autopkgtest [13:52:49]: testbed dpkg architecture: arm64 73s autopkgtest [13:52:49]: testbed apt version: 2.7.12 73s autopkgtest [13:52:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 73s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 74s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 74s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 75s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 75s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 75s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 75s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 75s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 75s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 75s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 75s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 75s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 76s Fetched 9092 kB in 2s (4006 kB/s) 77s Reading package lists... 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s The following packages will be REMOVED: 81s libssl3 81s The following NEW packages will be installed: 81s libssl3t64 81s The following packages have been kept back: 81s curl 81s The following packages will be upgraded: 81s openssl ubuntu-minimal ubuntu-standard 81s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 81s Need to get 2775 kB of archives. 81s After this operation, 72.7 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 81s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 81s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 82s Fetched 2775 kB in 1s (4150 kB/s) 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 82s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 82s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 82s wget depends on libssl3 (>= 3.0.0). 82s u-boot-tools depends on libssl3 (>= 3.0.0). 82s tnftp depends on libssl3 (>= 3.0.0). 82s tcpdump depends on libssl3 (>= 3.0.0). 82s systemd-resolved depends on libssl3 (>= 3.0.0). 82s systemd depends on libssl3 (>= 3.0.0). 82s sudo depends on libssl3 (>= 3.0.0). 82s sbsigntool depends on libssl3 (>= 3.0.0). 82s rsync depends on libssl3 (>= 3.0.0). 82s python3-cryptography depends on libssl3 (>= 3.0.0). 82s openssh-server depends on libssl3 (>= 3.0.10). 82s openssh-client depends on libssl3 (>= 3.0.10). 82s mtd-utils depends on libssl3 (>= 3.0.0). 82s mokutil depends on libssl3 (>= 3.0.0). 82s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 82s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 82s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 82s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 82s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 82s libnvme1 depends on libssl3 (>= 3.0.0). 82s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 82s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 82s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 82s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 82s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 82s kmod depends on libssl3 (>= 3.0.0). 82s dhcpcd-base depends on libssl3 (>= 3.0.0). 82s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 82s 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 82s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 82s Selecting previously unselected package libssl3t64:arm64. 82s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 82s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 82s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 82s Unpacking ubuntu-minimal (1.536) over (1.535) ... 82s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 82s Unpacking ubuntu-standard (1.536) over (1.535) ... 82s Setting up ubuntu-minimal (1.536) ... 82s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 82s Setting up ubuntu-standard (1.536) ... 82s Setting up openssl (3.0.13-0ubuntu1) ... 83s Processing triggers for man-db (2.12.0-3) ... 83s Processing triggers for libc-bin (2.39-0ubuntu2) ... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 85s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 85s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 85s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 85s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 87s Reading package lists... 87s Reading package lists... 88s Building dependency tree... 88s Reading state information... 88s Calculating upgrade... 89s The following packages have been kept back: 89s curl 89s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 94s autopkgtest [13:53:10]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 94s autopkgtest [13:53:10]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-variantannotation 97s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (dsc) [2706 B] 97s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (tar) [1887 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-variantannotation 1.48.1-1build1 (diff) [8024 B] 97s gpgv: Signature made Sat Mar 16 06:57:56 2024 UTC 97s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 97s gpgv: issuer "steve.langasek@ubuntu.com" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.48.1-1build1.dsc: no acceptable signature found 97s autopkgtest [13:53:13]: testing package r-bioc-variantannotation version 1.48.1-1build1 98s autopkgtest [13:53:14]: build not needed 99s autopkgtest [13:53:15]: test pkg-r-autopkgtest: preparing testbed 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s Starting pkgProblemResolver with broken count: 0 103s Starting 2 pkgProblemResolver with broken count: 0 103s Done 104s The following additional packages will be installed: 104s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 104s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 104s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 104s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 104s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 104s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 104s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 104s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 104s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 104s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 104s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 104s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 104s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 104s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 104s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 104s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 104s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 104s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 104s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 104s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 104s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 104s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 104s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 104s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 104s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 104s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 104s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 104s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 104s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 104s r-base-dev r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 104s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 104s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 104s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 104s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 104s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 104s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 104s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 104s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 104s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 104s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 104s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 104s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 104s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 104s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 104s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 104s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 104s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 104s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 104s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 104s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 104s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 104s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 104s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 104s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 104s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 104s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 104s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 104s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 104s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 104s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 104s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 104s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 104s x11-common xdg-utils zip zlib1g-dev 104s Suggested packages: 104s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 104s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 104s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 104s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 104s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 104s libboost-context1.83-dev libboost-contract1.83-dev 104s libboost-coroutine1.83-dev libboost-date-time1.83-dev 104s libboost-exception1.83-dev libboost-fiber1.83-dev 104s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 104s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 104s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 104s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 104s libboost-numpy1.83-dev libboost-program-options1.83-dev 104s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 104s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 104s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 104s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 104s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 104s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 104s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 104s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 104s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 104s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 104s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 104s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 104s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-ensembldb 104s r-bioc-experimenthub r-bioc-all r-cran-testthat r-bioc-affy r-bioc-deseq2 104s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 104s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 104s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 104s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 104s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-dexseq 104s r-bioc-sparsematrixstats r-bioc-limma r-cran-hexbin r-bioc-rhdf5 104s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-kernsmooth r-cran-kernlab 104s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg r-cran-viridis 104s r-cran-rstudioapi r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 104s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 104s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 104s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 104s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 104s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 104s hintview texlive-latex-base-doc wp2latex 104s Recommended packages: 104s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 104s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-downlit 104s r-cran-rstudioapi r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte 104s r-cran-webshot r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery 104s r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench 104s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling 104s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future 104s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 104s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 104s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 104s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 104s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 104s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 104s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 104s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 104s r-cran-dichromat r-cran-data.table r-cran-mockr r-cran-formattable 104s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 104s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 104s x11-xserver-utils 104s The following packages will be REMOVED: 104s libcurl4 libpsl5 104s The following NEW packages will be installed: 104s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 104s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 104s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 104s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 104s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 104s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 104s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 104s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 104s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 104s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 104s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 104s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 104s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 104s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 104s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 104s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 104s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 104s libjs-popper.js libjs-prettify libjs-sifter.js 104s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 104s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 104s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 104s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 104s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 104s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 104s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 104s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 104s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 104s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 104s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 104s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 104s r-bioc-annotationdbi r-bioc-annotationhub r-bioc-biobase 104s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 104s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 104s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 104s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 104s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 104s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools 104s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-snpstats 104s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-variantannotation 104s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 104s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 104s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 104s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 104s r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr 104s r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate 104s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 104s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 104s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 104s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 104s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 104s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 104s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 104s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 104s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 104s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 104s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 104s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 104s r-cran-runit r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 104s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 104s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 104s r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xml 104s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 104s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 104s x11-common xdg-utils zip zlib1g-dev 104s The following packages will be upgraded: 104s curl 104s 1 upgraded, 302 newly installed, 2 to remove and 0 not upgraded. 104s Need to get 458 MB/458 MB of archives. 104s After this operation, 1394 MB of additional disk space will be used. 104s Get:1 /tmp/autopkgtest.VLuHHI/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 105s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 105s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 105s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 105s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 105s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 105s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 105s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 105s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 105s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 105s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 105s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 105s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 105s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 105s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 105s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 105s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 105s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 105s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 105s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 105s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 105s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 105s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 106s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 106s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 106s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 106s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 106s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 106s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 106s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 106s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 106s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 106s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 107s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 107s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 107s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 107s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 107s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 107s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 107s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 107s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 107s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 107s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 107s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 107s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 107s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 107s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 107s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 107s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 107s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 107s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 107s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 107s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 107s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 107s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 107s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 107s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 107s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 107s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 107s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 107s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 108s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 108s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 108s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 108s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 108s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 108s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 108s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 108s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 108s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 108s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 108s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 108s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 108s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 108s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 108s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 108s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 108s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 108s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 108s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 108s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 108s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 108s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 108s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 108s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 108s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 108s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 108s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 108s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 108s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 108s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 108s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 108s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 108s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 108s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 108s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 108s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 108s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 108s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 108s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 108s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 108s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 108s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 109s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 109s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 109s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 109s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 109s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 109s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 109s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 109s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 109s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 109s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 109s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 109s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 109s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 109s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 109s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 109s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 109s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 109s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 109s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 109s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 109s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 109s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 109s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 109s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 109s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 109s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 109s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 109s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 109s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 109s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 109s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 109s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 109s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 109s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 109s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 109s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 109s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 109s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 109s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 110s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 110s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 110s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 110s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 110s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 110s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 110s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 110s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 110s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 110s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 110s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 110s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 110s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 110s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 111s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 111s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 111s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 111s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 111s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 111s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 111s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 111s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 111s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 111s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 111s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 111s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 111s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 111s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 111s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 111s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 111s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 111s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 111s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 111s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 111s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 111s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 111s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 111s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 111s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 111s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 111s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 111s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 111s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 111s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 111s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 111s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 111s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 112s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 112s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 112s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 112s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 112s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 112s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 112s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 112s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 112s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 112s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 112s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 112s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 112s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 112s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 112s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 113s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 113s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 113s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 113s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 113s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 113s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 113s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 113s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 113s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 113s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 113s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 113s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 113s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 113s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 113s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 113s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 113s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 113s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 113s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 113s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 113s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 113s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 113s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 113s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 113s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 113s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 113s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 113s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 113s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 113s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 113s Get:235 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 114s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 114s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 114s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 114s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 114s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 114s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 114s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 114s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 114s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 114s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 114s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 114s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 114s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 114s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 114s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 114s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 114s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 114s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 114s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 114s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 114s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 114s Get:257 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 114s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 114s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 115s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 115s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 118s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 118s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 118s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 118s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 118s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 118s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 118s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 118s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 118s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 118s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 118s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 118s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 118s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 118s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 118s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 118s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 118s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 118s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 118s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 118s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 118s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 118s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 118s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 119s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 119s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 119s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 119s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-snpstats arm64 1.52.0+dfsg-1 [7236 kB] 119s Get:289 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-variantannotation arm64 1.48.1-1build1 [3531 kB] 119s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 120s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 120s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 120s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 120s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 120s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 120s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 120s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 120s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 120s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 120s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 120s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 120s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 120s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 124s Preconfiguring packages ... 124s Fetched 458 MB in 16s (29.2 MB/s) 124s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 124s wget depends on libpsl5 (>= 0.16.0). 124s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 124s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 124s 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 125s Removing libpsl5:arm64 (0.21.2-1build1) ... 125s Selecting previously unselected package libpsl5t64:arm64. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 125s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 125s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 125s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 125s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 125s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 125s Selecting previously unselected package libcurl4t64:arm64. 125s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 125s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 125s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 125s Selecting previously unselected package libc-dev-bin. 125s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 125s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 125s Selecting previously unselected package linux-libc-dev:arm64. 125s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 125s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 125s Selecting previously unselected package libcrypt-dev:arm64. 125s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 125s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 125s Selecting previously unselected package libtirpc-dev:arm64. 125s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 125s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 126s Selecting previously unselected package libnsl-dev:arm64. 126s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 126s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 126s Selecting previously unselected package rpcsvc-proto. 126s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 126s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 126s Selecting previously unselected package libc6-dev:arm64. 126s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 126s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 126s Selecting previously unselected package libisl23:arm64. 126s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 126s Unpacking libisl23:arm64 (0.26-3) ... 126s Selecting previously unselected package libmpc3:arm64. 126s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 126s Unpacking libmpc3:arm64 (1.3.1-1) ... 126s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 126s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 126s Selecting previously unselected package cpp-13. 126s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 127s Selecting previously unselected package cpp-aarch64-linux-gnu. 127s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 127s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 127s Selecting previously unselected package cpp. 127s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 127s Unpacking cpp (4:13.2.0-7ubuntu1) ... 127s Selecting previously unselected package libcc1-0:arm64. 127s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 127s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libgomp1:arm64. 128s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libitm1:arm64. 128s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libatomic1:arm64. 128s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libasan8:arm64. 129s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package liblsan0:arm64. 129s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libtsan2:arm64. 129s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libubsan1:arm64. 129s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libhwasan0:arm64. 129s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libgcc-13-dev:arm64. 129s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 129s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 129s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 129s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 129s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 130s Selecting previously unselected package gcc-13. 130s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 130s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 130s Selecting previously unselected package gcc-aarch64-linux-gnu. 130s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 130s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 130s Selecting previously unselected package gcc. 130s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 130s Unpacking gcc (4:13.2.0-7ubuntu1) ... 130s Selecting previously unselected package libstdc++-13-dev:arm64. 130s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 130s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 131s Selecting previously unselected package g++-13-aarch64-linux-gnu. 131s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 131s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 131s Selecting previously unselected package g++-13. 131s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 131s Unpacking g++-13 (13.2.0-17ubuntu2) ... 131s Selecting previously unselected package g++-aarch64-linux-gnu. 131s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 131s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 131s Selecting previously unselected package g++. 131s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 131s Unpacking g++ (4:13.2.0-7ubuntu1) ... 131s Selecting previously unselected package build-essential. 131s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 131s Unpacking build-essential (12.10ubuntu1) ... 131s Selecting previously unselected package dctrl-tools. 131s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 131s Unpacking dctrl-tools (2.24-3build2) ... 131s Selecting previously unselected package fonts-dejavu-mono. 131s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 131s Unpacking fonts-dejavu-mono (2.37-8) ... 131s Selecting previously unselected package fonts-dejavu-core. 131s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 131s Unpacking fonts-dejavu-core (2.37-8) ... 131s Selecting previously unselected package fontconfig-config. 132s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 132s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 132s Selecting previously unselected package libfontconfig1:arm64. 132s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 132s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 132s Selecting previously unselected package fontconfig. 132s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 132s Unpacking fontconfig (2.15.0-1ubuntu1) ... 132s Selecting previously unselected package fonts-font-awesome. 132s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 132s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 132s Selecting previously unselected package fonts-glyphicons-halflings. 132s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 132s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 132s Selecting previously unselected package fonts-lmodern. 132s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 132s Unpacking fonts-lmodern (2.005-1) ... 133s Selecting previously unselected package fonts-mathjax. 133s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 133s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 133s Selecting previously unselected package libgfortran5:arm64. 133s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 133s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 133s Selecting previously unselected package libgfortran-13-dev:arm64. 133s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 133s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 133s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 133s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 133s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 133s Selecting previously unselected package gfortran-13. 133s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 133s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 133s Selecting previously unselected package gfortran-aarch64-linux-gnu. 133s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 133s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 133s Selecting previously unselected package gfortran. 134s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 134s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 134s Selecting previously unselected package icu-devtools. 134s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 134s Unpacking icu-devtools (74.2-1ubuntu1) ... 134s Selecting previously unselected package javascript-common. 134s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 134s Unpacking javascript-common (11+nmu1) ... 134s Selecting previously unselected package libio-string-perl. 134s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 134s Unpacking libio-string-perl (1.08-4) ... 134s Selecting previously unselected package liblatex-tounicode-perl. 134s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 134s Unpacking liblatex-tounicode-perl (0.54-2) ... 134s Selecting previously unselected package libbibtex-parser-perl. 134s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 134s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 134s Selecting previously unselected package libblas3:arm64. 134s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 134s Unpacking libblas3:arm64 (3.12.0-3) ... 134s Selecting previously unselected package libblas-dev:arm64. 134s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 134s Unpacking libblas-dev:arm64 (3.12.0-3) ... 135s Selecting previously unselected package libboost1.83-dev:arm64. 135s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 135s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 137s Selecting previously unselected package libboost-dev:arm64. 137s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 137s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 137s Selecting previously unselected package libbz2-dev:arm64. 137s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 137s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 137s Selecting previously unselected package libpixman-1-0:arm64. 137s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 137s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 137s Selecting previously unselected package libxcb-render0:arm64. 137s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 137s Unpacking libxcb-render0:arm64 (1.15-1) ... 137s Selecting previously unselected package libxcb-shm0:arm64. 137s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 137s Unpacking libxcb-shm0:arm64 (1.15-1) ... 137s Selecting previously unselected package libxrender1:arm64. 137s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 137s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 137s Selecting previously unselected package libcairo2:arm64. 137s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 137s Unpacking libcairo2:arm64 (1.18.0-1) ... 137s Selecting previously unselected package libdatrie1:arm64. 137s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 137s Unpacking libdatrie1:arm64 (0.2.13-3) ... 137s Selecting previously unselected package libdeflate0:arm64. 137s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 137s Unpacking libdeflate0:arm64 (1.19-1) ... 137s Selecting previously unselected package libgraphite2-3:arm64. 138s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 138s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 138s Selecting previously unselected package libharfbuzz0b:arm64. 138s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 138s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 138s Selecting previously unselected package x11-common. 138s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 138s Unpacking x11-common (1:7.7+23ubuntu2) ... 138s Selecting previously unselected package libice6:arm64. 138s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 138s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 138s Selecting previously unselected package libicu-dev:arm64. 138s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 138s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 139s Selecting previously unselected package libjpeg-turbo8:arm64. 139s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 139s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 139s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 139s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 139s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 139s Selecting previously unselected package libjpeg8:arm64. 139s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 139s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 139s Selecting previously unselected package libjpeg8-dev:arm64. 139s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 139s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 139s Selecting previously unselected package libjpeg-dev:arm64. 139s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 139s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 139s Selecting previously unselected package libjs-bootstrap. 140s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 140s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 140s Selecting previously unselected package libjs-popper.js. 140s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 140s Unpacking libjs-popper.js (1.16.1+ds-6) ... 140s Selecting previously unselected package libjs-bootstrap4. 140s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 140s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 140s Selecting previously unselected package libjs-d3. 140s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 140s Unpacking libjs-d3 (3.5.17-4) ... 140s Selecting previously unselected package libjs-es5-shim. 140s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 140s Unpacking libjs-es5-shim (4.6.7-2) ... 140s Selecting previously unselected package libjs-highlight.js. 140s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 140s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 141s Selecting previously unselected package libjs-jquery. 141s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 141s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 141s Selecting previously unselected package libjs-jquery-datatables. 141s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 141s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 141s Selecting previously unselected package libjs-jquery-datatables-extensions. 141s Preparing to unpack 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unselected package libjs-json. 141s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 141s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 141s Selecting previously unselected package libjs-lunr. 141s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 141s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 141s Selecting previously unselected package libjs-prettify. 141s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 141s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 141s Selecting previously unselected package libkpathsea6:arm64. 141s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 141s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 141s Selecting previously unselected package liblapack3:arm64. 142s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 142s Unpacking liblapack3:arm64 (3.12.0-3) ... 142s Selecting previously unselected package liblapack-dev:arm64. 142s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 142s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 142s Selecting previously unselected package liblerc4:arm64. 142s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 142s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 142s Selecting previously unselected package liblua5.4-0:arm64. 142s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 142s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 142s Selecting previously unselected package libncurses-dev:arm64. 142s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 142s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 142s Selecting previously unselected package libthai-data. 143s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 143s Unpacking libthai-data (0.1.29-2) ... 143s Selecting previously unselected package libthai0:arm64. 143s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 143s Unpacking libthai0:arm64 (0.1.29-2) ... 143s Selecting previously unselected package libpango-1.0-0:arm64. 143s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 143s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 143s Selecting previously unselected package libpangoft2-1.0-0:arm64. 143s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 143s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 143s Selecting previously unselected package libpangocairo-1.0-0:arm64. 143s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 143s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 143s Selecting previously unselected package libpaper1:arm64. 143s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 143s Unpacking libpaper1:arm64 (1.1.29) ... 143s Selecting previously unselected package libpaper-utils. 144s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 144s Unpacking libpaper-utils (1.1.29) ... 144s Selecting previously unselected package libpcre2-16-0:arm64. 144s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 144s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 144s Selecting previously unselected package libpcre2-32-0:arm64. 144s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 144s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 144s Selecting previously unselected package libpcre2-posix3:arm64. 144s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 144s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 144s Selecting previously unselected package libpcre2-dev:arm64. 144s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 144s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 144s Selecting previously unselected package libpkgconf3:arm64. 144s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 144s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 144s Selecting previously unselected package zlib1g-dev:arm64. 144s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 144s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 144s Selecting previously unselected package libpng-dev:arm64. 144s Preparing to unpack .../112-libpng-dev_1.6.43-1_arm64.deb ... 144s Unpacking libpng-dev:arm64 (1.6.43-1) ... 144s Selecting previously unselected package libpotrace0:arm64. 145s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 145s Unpacking libpotrace0:arm64 (1.16-2) ... 145s Selecting previously unselected package libptexenc1:arm64. 145s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 145s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 145s Selecting previously unselected package libreadline-dev:arm64. 145s Preparing to unpack .../115-libreadline-dev_8.2-3_arm64.deb ... 145s Unpacking libreadline-dev:arm64 (8.2-3) ... 145s Selecting previously unselected package libsharpyuv0:arm64. 145s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 145s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 145s Selecting previously unselected package libsm6:arm64. 145s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 145s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 145s Selecting previously unselected package libsynctex2:arm64. 145s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 145s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 145s Selecting previously unselected package libtcl8.6:arm64. 145s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 145s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 145s Selecting previously unselected package libteckit0:arm64. 145s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 145s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 145s Selecting previously unselected package libtexlua53-5:arm64. 145s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 145s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 145s Selecting previously unselected package libjbig0:arm64. 145s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 145s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 145s Selecting previously unselected package libwebp7:arm64. 145s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 145s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 145s Selecting previously unselected package libtiff6:arm64. 145s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 145s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 145s Selecting previously unselected package libxft2:arm64. 145s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 145s Unpacking libxft2:arm64 (2.3.6-1) ... 145s Selecting previously unselected package libxss1:arm64. 145s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 145s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 146s Selecting previously unselected package libtk8.6:arm64. 146s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 146s Unpacking libtk8.6:arm64 (8.6.13-2) ... 146s Selecting previously unselected package libxt6:arm64. 146s Preparing to unpack .../128-libxt6_1%3a1.2.1-1.1_arm64.deb ... 146s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 146s Selecting previously unselected package libxmu6:arm64. 146s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 146s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 146s Selecting previously unselected package libxpm4:arm64. 146s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 146s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 146s Selecting previously unselected package libxaw7:arm64. 146s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 146s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 146s Selecting previously unselected package libxi6:arm64. 146s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 146s Unpacking libxi6:arm64 (2:1.8.1-1) ... 146s Selecting previously unselected package libzzip-0-13:arm64. 146s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 146s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 146s Selecting previously unselected package node-bootstrap-sass. 146s Preparing to unpack .../134-node-bootstrap-sass_3.4.3-2_all.deb ... 146s Unpacking node-bootstrap-sass (3.4.3-2) ... 146s Selecting previously unselected package node-html5shiv. 146s Preparing to unpack .../135-node-html5shiv_3.7.3+dfsg-5_all.deb ... 146s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 146s Selecting previously unselected package node-normalize.css. 146s Preparing to unpack .../136-node-normalize.css_8.0.1-5_all.deb ... 146s Unpacking node-normalize.css (8.0.1-5) ... 146s Selecting previously unselected package pandoc-data. 146s Preparing to unpack .../137-pandoc-data_3.1.3-1_all.deb ... 146s Unpacking pandoc-data (3.1.3-1) ... 146s Selecting previously unselected package pandoc. 146s Preparing to unpack .../138-pandoc_3.1.3+ds-2_arm64.deb ... 146s Unpacking pandoc (3.1.3+ds-2) ... 148s Selecting previously unselected package pkgconf-bin. 148s Preparing to unpack .../139-pkgconf-bin_1.8.1-2_arm64.deb ... 148s Unpacking pkgconf-bin (1.8.1-2) ... 148s Selecting previously unselected package pkgconf:arm64. 148s Preparing to unpack .../140-pkgconf_1.8.1-2_arm64.deb ... 148s Unpacking pkgconf:arm64 (1.8.1-2) ... 148s Selecting previously unselected package pkg-config:arm64. 148s Preparing to unpack .../141-pkg-config_1.8.1-2_arm64.deb ... 148s Unpacking pkg-config:arm64 (1.8.1-2) ... 148s Selecting previously unselected package zip. 148s Preparing to unpack .../142-zip_3.0-13_arm64.deb ... 148s Unpacking zip (3.0-13) ... 148s Selecting previously unselected package unzip. 148s Preparing to unpack .../143-unzip_6.0-28ubuntu3_arm64.deb ... 148s Unpacking unzip (6.0-28ubuntu3) ... 148s Selecting previously unselected package xdg-utils. 148s Preparing to unpack .../144-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 148s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 148s Selecting previously unselected package r-base-core. 148s Preparing to unpack .../145-r-base-core_4.3.2-1build1_arm64.deb ... 148s Unpacking r-base-core (4.3.2-1build1) ... 148s Selecting previously unselected package liblzma-dev:arm64. 148s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 148s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 148s Selecting previously unselected package r-base-dev. 149s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 149s Unpacking r-base-dev (4.3.2-1build1) ... 149s Selecting previously unselected package pkg-r-autopkgtest. 149s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 149s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 149s Selecting previously unselected package r-bioc-biocgenerics. 149s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 149s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 149s Selecting previously unselected package r-bioc-biobase. 149s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 149s Unpacking r-bioc-biobase (2.62.0-1) ... 149s Selecting previously unselected package r-bioc-s4vectors. 149s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 149s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 149s Selecting previously unselected package r-bioc-iranges. 149s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 149s Unpacking r-bioc-iranges (2.36.0-1) ... 149s Selecting previously unselected package r-cran-dbi. 149s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 149s Unpacking r-cran-dbi (1.2.2-1) ... 149s Selecting previously unselected package r-cran-bit. 149s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 149s Unpacking r-cran-bit (4.0.5-1) ... 149s Selecting previously unselected package r-cran-bit64. 149s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 149s Unpacking r-cran-bit64 (4.0.5-1) ... 149s Selecting previously unselected package r-cran-rlang. 149s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 149s Unpacking r-cran-rlang (1.1.3-1) ... 149s Selecting previously unselected package r-cran-cli. 149s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 149s Unpacking r-cran-cli (3.6.2-1) ... 150s Selecting previously unselected package r-cran-glue. 150s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 150s Unpacking r-cran-glue (1.7.0-1) ... 150s Selecting previously unselected package r-cran-lifecycle. 150s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 150s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 150s Selecting previously unselected package r-cran-vctrs. 150s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 150s Unpacking r-cran-vctrs (0.6.5-1) ... 150s Selecting previously unselected package r-cran-blob. 150s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 150s Unpacking r-cran-blob (1.2.4-1) ... 150s Selecting previously unselected package r-cran-fastmap. 150s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 150s Unpacking r-cran-fastmap (1.1.1-1) ... 150s Selecting previously unselected package r-cran-cachem. 150s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 150s Unpacking r-cran-cachem (1.0.8-1) ... 150s Selecting previously unselected package r-cran-memoise. 150s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 150s Unpacking r-cran-memoise (2.0.1-1) ... 150s Selecting previously unselected package r-cran-pkgconfig. 151s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 151s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 151s Selecting previously unselected package r-cran-plogr. 151s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 151s Unpacking r-cran-plogr (0.2.0-3build1) ... 151s Selecting previously unselected package r-cran-cpp11. 151s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 151s Unpacking r-cran-cpp11 (0.4.7-1) ... 151s Selecting previously unselected package r-cran-rsqlite. 151s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 151s Unpacking r-cran-rsqlite (2.3.4-1) ... 151s Selecting previously unselected package r-cran-curl. 151s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 151s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 151s Selecting previously unselected package r-cran-jsonlite. 151s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 151s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 151s Selecting previously unselected package r-cran-mime. 151s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 151s Unpacking r-cran-mime (0.12-1) ... 151s Selecting previously unselected package r-cran-sys. 151s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 151s Unpacking r-cran-sys (3.4.2-1) ... 151s Selecting previously unselected package r-cran-askpass. 151s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 151s Unpacking r-cran-askpass (1.2.0-1) ... 151s Selecting previously unselected package r-cran-openssl. 152s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 152s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 152s Selecting previously unselected package r-cran-r6. 152s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 152s Unpacking r-cran-r6 (2.5.1-1) ... 152s Selecting previously unselected package r-cran-httr. 152s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 152s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 152s Selecting previously unselected package r-cran-png. 152s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 152s Unpacking r-cran-png (0.1-8-1) ... 152s Selecting previously unselected package r-bioc-zlibbioc. 152s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 152s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 152s Selecting previously unselected package r-bioc-xvector. 152s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 152s Unpacking r-bioc-xvector (0.42.0-1) ... 152s Selecting previously unselected package r-cran-bitops. 152s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 152s Unpacking r-cran-bitops (1.0-7-1) ... 152s Selecting previously unselected package r-cran-rcurl. 152s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 152s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 152s Selecting previously unselected package r-bioc-genomeinfodbdata. 152s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 152s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 152s Selecting previously unselected package r-bioc-genomeinfodb. 152s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 152s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 153s Selecting previously unselected package r-cran-crayon. 153s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 153s Unpacking r-cran-crayon (1.5.2-1) ... 153s Selecting previously unselected package r-bioc-biostrings. 153s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 153s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 153s Selecting previously unselected package r-bioc-keggrest. 153s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 153s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 153s Selecting previously unselected package r-bioc-annotationdbi. 153s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 153s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 153s Selecting previously unselected package r-cran-generics. 154s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 154s Unpacking r-cran-generics (0.1.3-1) ... 154s Selecting previously unselected package r-cran-magrittr. 154s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 154s Unpacking r-cran-magrittr (2.0.3-1) ... 154s Selecting previously unselected package r-cran-fansi. 154s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 154s Unpacking r-cran-fansi (1.0.5-1) ... 154s Selecting previously unselected package r-cran-utf8. 155s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 155s Unpacking r-cran-utf8 (1.2.4-1) ... 155s Selecting previously unselected package r-cran-pillar. 155s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 155s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-tibble. 155s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 155s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 155s Selecting previously unselected package r-cran-withr. 155s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 155s Unpacking r-cran-withr (2.5.0-1) ... 155s Selecting previously unselected package r-cran-tidyselect. 155s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 155s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-dplyr. 155s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 155s Unpacking r-cran-dplyr (1.1.4-1) ... 155s Selecting previously unselected package r-cran-purrr. 155s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 155s Unpacking r-cran-purrr (1.0.2-1) ... 155s Selecting previously unselected package r-cran-stringi. 155s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 155s Unpacking r-cran-stringi (1.8.3-1) ... 155s Selecting previously unselected package r-cran-stringr. 155s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 155s Unpacking r-cran-stringr (1.5.1-1) ... 155s Selecting previously unselected package r-cran-tidyr. 155s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 155s Unpacking r-cran-tidyr (1.3.1-1) ... 155s Selecting previously unselected package r-cran-dbplyr. 155s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 155s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-filelock. 155s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 155s Unpacking r-cran-filelock (1.0.3-1) ... 156s Selecting previously unselected package r-bioc-biocfilecache. 156s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 156s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 156s Selecting previously unselected package r-cran-biocmanager. 156s Preparing to unpack .../204-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 156s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 156s Selecting previously unselected package r-bioc-biocversion. 156s Preparing to unpack .../205-r-bioc-biocversion_3.18.1-1_all.deb ... 156s Unpacking r-bioc-biocversion (3.18.1-1) ... 156s Selecting previously unselected package r-cran-rappdirs. 156s Preparing to unpack .../206-r-cran-rappdirs_0.3.3-1_arm64.deb ... 156s Unpacking r-cran-rappdirs (0.3.3-1) ... 156s Selecting previously unselected package r-cran-yaml. 157s Preparing to unpack .../207-r-cran-yaml_2.3.8-1_arm64.deb ... 157s Unpacking r-cran-yaml (2.3.8-1) ... 157s Selecting previously unselected package r-cran-littler. 157s Preparing to unpack .../208-r-cran-littler_0.3.19-1_arm64.deb ... 157s Unpacking r-cran-littler (0.3.19-1) ... 157s Selecting previously unselected package r-cran-pkgkitten. 157s Preparing to unpack .../209-r-cran-pkgkitten_0.2.3-1_all.deb ... 157s Unpacking r-cran-pkgkitten (0.2.3-1) ... 157s Selecting previously unselected package r-cran-rcpp. 157s Preparing to unpack .../210-r-cran-rcpp_1.0.12-1_arm64.deb ... 157s Unpacking r-cran-rcpp (1.0.12-1) ... 157s Selecting previously unselected package r-cran-later. 157s Preparing to unpack .../211-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 157s Unpacking r-cran-later (1.3.2+dfsg-1) ... 157s Selecting previously unselected package r-cran-promises. 157s Preparing to unpack .../212-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 157s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 157s Selecting previously unselected package r-cran-httpuv. 157s Preparing to unpack .../213-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 157s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 157s Selecting previously unselected package r-cran-xtable. 157s Preparing to unpack .../214-r-cran-xtable_1%3a1.8-4-2_all.deb ... 157s Unpacking r-cran-xtable (1:1.8-4-2) ... 158s Selecting previously unselected package r-cran-base64enc. 158s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 158s Unpacking r-cran-base64enc (0.1-3-3) ... 158s Selecting previously unselected package r-cran-digest. 158s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 158s Unpacking r-cran-digest (0.6.34-1) ... 158s Selecting previously unselected package r-cran-ellipsis. 158s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 158s Unpacking r-cran-ellipsis (0.3.2-2) ... 158s Selecting previously unselected package r-cran-htmltools. 158s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 158s Unpacking r-cran-htmltools (0.5.7-1) ... 158s Selecting previously unselected package r-cran-fontawesome. 158s Preparing to unpack .../219-r-cran-fontawesome_0.5.2-1_all.deb ... 158s Unpacking r-cran-fontawesome (0.5.2-1) ... 158s Selecting previously unselected package r-cran-sourcetools. 158s Preparing to unpack .../220-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 158s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 158s Selecting previously unselected package r-cran-commonmark. 158s Preparing to unpack .../221-r-cran-commonmark_1.9.1-1_arm64.deb ... 158s Unpacking r-cran-commonmark (1.9.1-1) ... 158s Selecting previously unselected package r-cran-jquerylib. 158s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 158s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 158s Selecting previously unselected package r-cran-fs. 158s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 158s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 158s Selecting previously unselected package r-cran-sass. 158s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 158s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 158s Selecting previously unselected package r-cran-bslib. 158s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 158s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 159s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 159s Preparing to unpack .../226-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 159s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 159s Selecting previously unselected package r-cran-shiny. 159s Preparing to unpack .../227-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 159s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-evaluate. 159s Preparing to unpack .../228-r-cran-evaluate_0.23-1_all.deb ... 159s Unpacking r-cran-evaluate (0.23-1) ... 159s Selecting previously unselected package r-cran-xfun. 159s Preparing to unpack .../229-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 159s Unpacking r-cran-xfun (0.41+dfsg-1) ... 159s Selecting previously unselected package r-cran-highr. 159s Preparing to unpack .../230-r-cran-highr_0.10+dfsg-1_all.deb ... 159s Unpacking r-cran-highr (0.10+dfsg-1) ... 159s Selecting previously unselected package libjs-mathjax. 159s Preparing to unpack .../231-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 159s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 160s Selecting previously unselected package r-cran-knitr. 160s Preparing to unpack .../232-r-cran-knitr_1.45+dfsg-1_all.deb ... 160s Unpacking r-cran-knitr (1.45+dfsg-1) ... 160s Selecting previously unselected package r-cran-tinytex. 160s Preparing to unpack .../233-r-cran-tinytex_0.49-1_all.deb ... 160s Unpacking r-cran-tinytex (0.49-1) ... 160s Selecting previously unselected package libjs-modernizr. 160s Preparing to unpack .../234-libjs-modernizr_2.6.2+ds1-5_all.deb ... 160s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 160s Selecting previously unselected package r-cran-rmarkdown. 160s Preparing to unpack .../235-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 160s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 160s Selecting previously unselected package r-cran-htmlwidgets. 160s Preparing to unpack .../236-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 160s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 160s Selecting previously unselected package r-cran-lazyeval. 160s Preparing to unpack .../237-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 160s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 160s Selecting previously unselected package r-cran-crosstalk. 161s Preparing to unpack .../238-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 161s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 161s Selecting previously unselected package r-cran-dt. 161s Preparing to unpack .../239-r-cran-dt_0.31+dfsg-1_all.deb ... 161s Unpacking r-cran-dt (0.31+dfsg-1) ... 161s Selecting previously unselected package r-bioc-interactivedisplaybase. 161s Preparing to unpack .../240-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-annotationhub. 161s Preparing to unpack .../241-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-biocio. 161s Preparing to unpack .../242-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-formatr. 161s Preparing to unpack .../243-r-cran-formatr_1.14-1_all.deb ... 161s Unpacking r-cran-formatr (1.14-1) ... 161s Selecting previously unselected package r-cran-lambda.r. 161s Preparing to unpack .../244-r-cran-lambda.r_1.2.4-2build1_all.deb ... 161s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 161s Selecting previously unselected package r-cran-futile.options. 161s Preparing to unpack .../245-r-cran-futile.options_1.0.1-3build1_all.deb ... 161s Unpacking r-cran-futile.options (1.0.1-3build1) ... 161s Selecting previously unselected package r-cran-futile.logger. 161s Preparing to unpack .../246-r-cran-futile.logger_1.4.3-4build1_all.deb ... 161s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 161s Selecting previously unselected package r-cran-snow. 161s Preparing to unpack .../247-r-cran-snow_1%3a0.4.4-2_all.deb ... 161s Unpacking r-cran-snow (1:0.4.4-2) ... 161s Selecting previously unselected package r-cran-codetools. 161s Preparing to unpack .../248-r-cran-codetools_0.2-19-1_all.deb ... 161s Unpacking r-cran-codetools (0.2-19-1) ... 161s Selecting previously unselected package r-cran-bh. 161s Preparing to unpack .../249-r-cran-bh_1.84.0-1_all.deb ... 161s Unpacking r-cran-bh (1.84.0-1) ... 161s Selecting previously unselected package r-bioc-biocparallel. 161s Preparing to unpack .../250-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 161s Unpacking r-bioc-biocparallel (1.36.0-1) ... 162s Selecting previously unselected package r-cran-bookdown. 162s Preparing to unpack .../251-r-cran-bookdown_0.37+dfsg-1_all.deb ... 162s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 162s Selecting previously unselected package tex-common. 162s Preparing to unpack .../252-tex-common_6.18_all.deb ... 162s Unpacking tex-common (6.18) ... 162s Selecting previously unselected package t1utils. 162s Preparing to unpack .../253-t1utils_1.41-4build2_arm64.deb ... 162s Unpacking t1utils (1.41-4build2) ... 162s Selecting previously unselected package texlive-binaries. 162s Preparing to unpack .../254-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 162s Unpacking texlive-binaries (2023.20230311.66589-9) ... 162s Selecting previously unselected package texlive-base. 162s Preparing to unpack .../255-texlive-base_2023.20240207-1_all.deb ... 162s Unpacking texlive-base (2023.20240207-1) ... 163s Selecting previously unselected package texlive-latex-base. 163s Preparing to unpack .../256-texlive-latex-base_2023.20240207-1_all.deb ... 163s Unpacking texlive-latex-base (2023.20240207-1) ... 164s Selecting previously unselected package texlive-bibtex-extra. 164s Preparing to unpack .../257-texlive-bibtex-extra_2023.20240207-1_all.deb ... 164s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 165s Selecting previously unselected package r-bioc-biocstyle. 165s Preparing to unpack .../258-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-xml. 165s Preparing to unpack .../259-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 165s Unpacking r-cran-xml (3.99-0.16.1-1) ... 165s Selecting previously unselected package r-cran-hms. 165s Preparing to unpack .../260-r-cran-hms_1.1.3-1_all.deb ... 165s Unpacking r-cran-hms (1.1.3-1) ... 165s Selecting previously unselected package r-cran-prettyunits. 165s Preparing to unpack .../261-r-cran-prettyunits_1.2.0-1_all.deb ... 165s Unpacking r-cran-prettyunits (1.2.0-1) ... 166s Selecting previously unselected package r-cran-progress. 166s Preparing to unpack .../262-r-cran-progress_1.2.3-1_all.deb ... 166s Unpacking r-cran-progress (1.2.3-1) ... 166s Selecting previously unselected package r-cran-xml2. 166s Preparing to unpack .../263-r-cran-xml2_1.3.6-1_arm64.deb ... 166s Unpacking r-cran-xml2 (1.3.6-1) ... 166s Selecting previously unselected package r-bioc-biomart. 166s Preparing to unpack .../264-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 166s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 166s Selecting previously unselected package r-bioc-genomicranges. 166s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 166s Selecting previously unselected package r-bioc-rhtslib. 166s Preparing to unpack .../266-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 166s Selecting previously unselected package r-bioc-rsamtools. 166s Preparing to unpack .../267-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 166s Selecting previously unselected package r-cran-matrixstats. 166s Preparing to unpack .../268-r-cran-matrixstats_1.2.0-1_arm64.deb ... 166s Unpacking r-cran-matrixstats (1.2.0-1) ... 166s Selecting previously unselected package r-bioc-matrixgenerics. 166s Preparing to unpack .../269-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 166s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 166s Selecting previously unselected package r-cran-lattice. 166s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 166s Unpacking r-cran-lattice (0.22-5-1) ... 166s Selecting previously unselected package r-cran-matrix. 166s Preparing to unpack .../271-r-cran-matrix_1.6-5-1_arm64.deb ... 166s Unpacking r-cran-matrix (1.6-5-1) ... 166s Selecting previously unselected package r-cran-abind. 166s Preparing to unpack .../272-r-cran-abind_1.4-5-2_all.deb ... 166s Unpacking r-cran-abind (1.4-5-2) ... 166s Selecting previously unselected package r-bioc-s4arrays. 166s Preparing to unpack .../273-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 166s Selecting previously unselected package r-bioc-sparsearray. 166s Preparing to unpack .../274-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 167s Selecting previously unselected package r-bioc-delayedarray. 167s Preparing to unpack .../275-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 167s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 167s Selecting previously unselected package r-bioc-summarizedexperiment. 167s Preparing to unpack .../276-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 167s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 167s Selecting previously unselected package r-bioc-genomicalignments. 167s Preparing to unpack .../277-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 167s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 167s Selecting previously unselected package r-cran-rjson. 167s Preparing to unpack .../278-r-cran-rjson_0.2.21-1_arm64.deb ... 167s Unpacking r-cran-rjson (0.2.21-1) ... 167s Selecting previously unselected package r-cran-restfulr. 167s Preparing to unpack .../279-r-cran-restfulr_0.0.15-1_arm64.deb ... 167s Unpacking r-cran-restfulr (0.0.15-1) ... 167s Selecting previously unselected package r-bioc-rtracklayer. 167s Preparing to unpack .../280-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 167s Unpacking 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r-cran-generics (0.1.3-1) ... 182s Setting up r-cran-base64enc (0.1-3-3) ... 182s Setting up r-cran-abind (1.4-5-2) ... 182s Setting up r-cran-digest (0.6.34-1) ... 182s Setting up r-cran-yaml (2.3.8-1) ... 182s Setting up r-cran-lambda.r (1.2.4-2build1) ... 182s Setting up r-cran-evaluate (0.23-1) ... 182s Setting up r-cran-dbi (1.2.2-1) ... 182s Setting up r-cran-highr (0.10+dfsg-1) ... 182s Setting up r-cran-prettyunits (1.2.0-1) ... 182s Setting up r-cran-fansi (1.0.5-1) ... 182s Setting up r-cran-mass (7.3-60.0.1-1) ... 182s Setting up r-cran-snow (1:0.4.4-2) ... 182s Setting up r-cran-glue (1.7.0-1) ... 182s Setting up r-cran-bit (4.0.5-1) ... 182s Setting up r-cran-xtable (1:1.8-4-2) ... 182s Setting up r-cran-cli (3.6.2-1) ... 182s Setting up gfortran (4:13.2.0-7ubuntu1) ... 182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 182s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 182s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 182s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 182s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 182s Setting up r-cran-bitops (1.0-7-1) ... 182s Setting up r-bioc-biocversion (3.18.1-1) ... 182s Setting up r-cran-bit64 (4.0.5-1) ... 182s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 182s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 182s Setting up r-cran-askpass (1.2.0-1) ... 182s Setting up r-cran-fastmap (1.1.1-1) ... 182s Setting up r-cran-png (0.1-8-1) ... 182s Setting up r-bioc-biobase (2.62.0-1) ... 182s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 182s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 182s Setting up r-cran-utf8 (1.2.4-1) ... 182s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 182s Setting up r-cran-stringi (1.8.3-1) ... 182s Setting up texlive-latex-base (2023.20240207-1) ... 182s Setting up r-cran-cpp11 (0.4.7-1) ... 182s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 182s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 182s Setting up r-cran-isoband (0.2.7-1) ... 182s Setting up r-cran-runit (0.4.32-3) ... 182s Setting up r-cran-futile.logger (1.4.3-4build1) ... 182s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 182s Setting up r-cran-later (1.3.2+dfsg-1) ... 182s Setting up r-cran-matrix (1.6-5-1) ... 182s Setting up r-cran-tinytex (0.49-1) ... 182s Setting up r-cran-knitr (1.45+dfsg-1) ... 182s Setting up r-cran-mgcv (1.9-1-1) ... 182s Setting up g++ (4:13.2.0-7ubuntu1) ... 182s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 182s Setting up r-cran-cachem (1.0.8-1) ... 182s Setting up build-essential (12.10ubuntu1) ... 182s Setting up r-bioc-iranges (2.36.0-1) ... 182s Setting up r-cran-rjson (0.2.21-1) ... 182s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 182s Setting up r-cran-restfulr (0.0.15-1) ... 182s Setting up r-cran-vctrs (0.6.5-1) ... 182s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 182s Setting up r-cran-ellipsis (0.3.2-2) ... 182s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 182s Setting up r-base-dev (4.3.2-1build1) ... 182s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 182s Setting up r-cran-stringr (1.5.1-1) ... 182s Setting up r-bioc-biocparallel (1.36.0-1) ... 182s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 182s Setting up r-cran-xml2 (1.3.6-1) ... 182s Setting up r-cran-munsell (0.5.0-2build1) ... 182s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 182s Setting up r-cran-survival (3.5-8-1) ... 182s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 182s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 182s Setting up r-bioc-snpstats (1.52.0+dfsg-1) ... 182s Setting up texlive-bibtex-extra (2023.20240207-1) ... 182s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 182s Setting up r-cran-httr (1.4.7+dfsg-1) ... 182s Setting up r-cran-hms (1.1.3-1) ... 182s Setting up r-cran-scales (1.3.0-1) ... 182s Setting up r-cran-memoise (2.0.1-1) ... 182s Setting up r-cran-promises (1.2.1+dfsg-1) ... 182s Setting up r-cran-purrr (1.0.2-1) ... 182s Setting up r-cran-blob (1.2.4-1) ... 182s Setting up r-cran-htmltools (0.5.7-1) ... 182s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 182s Setting up r-bioc-xvector (0.42.0-1) ... 182s Setting up r-cran-sass (0.4.8+dfsg-1) ... 182s Setting up r-cran-dplyr (1.1.4-1) ... 182s Setting up r-cran-rsqlite (2.3.4-1) ... 182s Setting up r-cran-progress (1.2.3-1) ... 182s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 182s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 182s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 182s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 182s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 182s Setting up r-cran-fontawesome (0.5.2-1) ... 182s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 182s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 182s Setting up r-cran-tidyr (1.3.1-1) ... 182s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 182s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 182s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 182s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 182s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 182s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 182s Setting up r-bioc-annotationdbi (1.64.1-1) ... 182s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 182s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 182s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 182s Setting up r-bioc-genomicalignments (1.38.2-1) ... 182s Setting up r-cran-bookdown (0.37+dfsg-1) ... 182s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 182s Setting up r-bioc-rtracklayer (1.62.0-1) ... 182s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 182s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 182s Setting up r-bioc-bsgenome (1.70.2-1) ... 182s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 182s Setting up r-cran-dt (0.31+dfsg-1) ... 182s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 182s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 182s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 182s Setting up autopkgtest-satdep (0) ... 182s Processing triggers for man-db (2.12.0-3) ... 183s Processing triggers for install-info (7.1-3) ... 183s Processing triggers for libc-bin (2.39-0ubuntu2) ... 183s Processing triggers for tex-common (6.18) ... 183s Running updmap-sys. This may take some time... done. 183s Running mktexlsr /var/lib/texmf ... done. 183s Building format(s) --all. 222s This may take some time... done. 238s (Reading database ... 126351 files and directories currently installed.) 238s Removing autopkgtest-satdep (0) ... 239s autopkgtest [13:55:35]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 239s autopkgtest [13:55:35]: test pkg-r-autopkgtest: [----------------------- 240s Test: Try to load the R library VariantAnnotation 240s 240s R version 4.3.2 (2023-10-31) -- "Eye Holes" 240s Copyright (C) 2023 The R Foundation for Statistical Computing 240s Platform: aarch64-unknown-linux-gnu (64-bit) 240s 240s R is free software and comes with ABSOLUTELY NO WARRANTY. 240s You are welcome to redistribute it under certain conditions. 240s Type 'license()' or 'licence()' for distribution details. 240s 240s R is a collaborative project with many contributors. 240s Type 'contributors()' for more information and 240s 'citation()' on how to cite R or R packages in publications. 240s 240s Type 'demo()' for some demos, 'help()' for on-line help, or 240s 'help.start()' for an HTML browser interface to help. 240s Type 'q()' to quit R. 240s 240s > library('VariantAnnotation') 240s Loading required package: BiocGenerics 241s 241s Attaching package: ‘BiocGenerics’ 241s 241s The following objects are masked from ‘package:stats’: 241s 241s IQR, mad, sd, var, xtabs 241s 241s The following objects are masked from ‘package:base’: 241s 241s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 241s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 241s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 241s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 241s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 241s table, tapply, union, unique, unsplit, which.max, which.min 241s 241s Loading required package: MatrixGenerics 241s Loading required package: matrixStats 241s 241s Attaching package: ‘MatrixGenerics’ 241s 241s The following objects are masked from ‘package:matrixStats’: 241s 241s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 241s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 241s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 241s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 241s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 241s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 241s colWeightedMeans, colWeightedMedians, colWeightedSds, 241s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 241s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 241s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 241s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 241s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 241s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 241s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 241s rowWeightedSds, rowWeightedVars 241s 241s Loading required package: GenomeInfoDb 241s Loading required package: S4Vectors 241s Loading required package: stats4 241s 241s Attaching package: ‘S4Vectors’ 241s 241s The following object is masked from ‘package:utils’: 241s 241s findMatches 241s 241s The following objects are masked from ‘package:base’: 241s 241s expand.grid, I, unname 241s 241s Loading required package: IRanges 242s Loading required package: GenomicRanges 243s Loading required package: SummarizedExperiment 243s Loading required package: Biobase 243s Welcome to Bioconductor 243s 243s Vignettes contain introductory material; view with 243s 'browseVignettes()'. To cite Bioconductor, see 243s 'citation("Biobase")', and for packages 'citation("pkgname")'. 243s 243s 243s Attaching package: ‘Biobase’ 243s 243s The following object is masked from ‘package:MatrixGenerics’: 243s 243s rowMedians 243s 243s The following objects are masked from ‘package:matrixStats’: 243s 243s anyMissing, rowMedians 243s 246s Loading required package: Rsamtools 246s Loading required package: Biostrings 246s Loading required package: XVector 248s 248s Attaching package: ‘Biostrings’ 248s 248s The following object is masked from ‘package:base’: 248s 248s strsplit 248s 253s 253s Attaching package: ‘VariantAnnotation’ 253s 253s The following object is masked from ‘package:base’: 253s 253s tabulate 253s 253s Warning message: 253s package ‘VariantAnnotation’ was built under R version 4.3.3 253s > 253s > 253s Other tests are currently unsupported! 253s They will be progressively added. 254s autopkgtest [13:55:50]: test pkg-r-autopkgtest: -----------------------] 254s pkg-r-autopkgtest PASS 254s autopkgtest [13:55:50]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 254s autopkgtest [13:55:50]: @@@@@@@@@@@@@@@@@@@@ summary 254s pkg-r-autopkgtest PASS 266s Creating nova instance adt-noble-arm64-r-bioc-variantannotation-20240316-135136-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...