0s autopkgtest [17:46:18]: starting date and time: 2024-03-16 17:46:18+0000 0s autopkgtest [17:46:18]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:46:18]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.om4nrpl_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-tfbstools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-noble-arm64-r-bioc-tfbstools-20240316-174618-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 137s autopkgtest [17:48:35]: testbed dpkg architecture: arm64 137s autopkgtest [17:48:35]: testbed apt version: 2.7.12 137s autopkgtest [17:48:35]: @@@@@@@@@@@@@@@@@@@@ test bed setup 137s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 138s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 138s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 138s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 138s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 138s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 138s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 138s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 138s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 138s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 138s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 138s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 138s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 140s Fetched 9060 kB in 2s (5323 kB/s) 141s Reading package lists... 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s Calculating upgrade... 144s The following packages will be REMOVED: 144s libglib2.0-0 libssl3 144s The following NEW packages will be installed: 144s libglib2.0-0t64 libssl3t64 xdg-user-dirs 144s The following packages have been kept back: 144s curl 144s The following packages will be upgraded: 144s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 144s ubuntu-minimal ubuntu-standard 145s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 145s Need to get 4613 kB of archives. 145s After this operation, 211 kB of additional disk space will be used. 145s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 145s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 145s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 145s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 145s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 145s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 145s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 145s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 145s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 146s Fetched 4613 kB in 1s (5698 kB/s) 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 146s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 146s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 147s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 147s udisks2 depends on libglib2.0-0 (>= 2.77.0). 147s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 147s python3-gi depends on libglib2.0-0 (>= 2.77.0). 147s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 147s netplan.io depends on libglib2.0-0 (>= 2.70.0). 147s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 147s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 147s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 147s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 147s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 147s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 147s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 147s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 147s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 147s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 147s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 147s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 147s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 147s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 147s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 147s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 147s fwupd depends on libglib2.0-0 (>= 2.79.0). 147s bolt depends on libglib2.0-0 (>= 2.56.0). 147s 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 147s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 147s Selecting previously unselected package libglib2.0-0t64:arm64. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 147s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 147s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 147s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 147s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 147s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 147s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 147s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 147s wget depends on libssl3 (>= 3.0.0). 147s u-boot-tools depends on libssl3 (>= 3.0.0). 147s tnftp depends on libssl3 (>= 3.0.0). 147s tcpdump depends on libssl3 (>= 3.0.0). 147s systemd-resolved depends on libssl3 (>= 3.0.0). 147s systemd depends on libssl3 (>= 3.0.0). 147s sudo depends on libssl3 (>= 3.0.0). 147s sbsigntool depends on libssl3 (>= 3.0.0). 147s rsync depends on libssl3 (>= 3.0.0). 147s python3-cryptography depends on libssl3 (>= 3.0.0). 147s openssh-server depends on libssl3 (>= 3.0.10). 147s openssh-client depends on libssl3 (>= 3.0.10). 147s mtd-utils depends on libssl3 (>= 3.0.0). 147s mokutil depends on libssl3 (>= 3.0.0). 147s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 147s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 147s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 147s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 147s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 147s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 147s libnvme1 depends on libssl3 (>= 3.0.0). 147s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 147s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 147s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 147s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 147s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 147s kmod depends on libssl3 (>= 3.0.0). 147s dhcpcd-base depends on libssl3 (>= 3.0.0). 147s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 147s 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 147s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 147s Selecting previously unselected package libssl3t64:arm64. 147s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 147s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 147s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 147s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 147s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 148s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 148s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 148s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 148s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 148s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 148s Unpacking ubuntu-minimal (1.536) over (1.535) ... 148s Selecting previously unselected package xdg-user-dirs. 148s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 148s Unpacking xdg-user-dirs (0.18-1) ... 148s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 148s Unpacking ubuntu-standard (1.536) over (1.535) ... 148s Setting up ubuntu-minimal (1.536) ... 148s Setting up xdg-user-dirs (0.18-1) ... 148s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 148s Setting up libtirpc-common (1.3.4+ds-1.1) ... 148s Setting up ubuntu-standard (1.536) ... 148s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 148s No schema files found: doing nothing. 148s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 148s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 148s Setting up openssl (3.0.13-0ubuntu1) ... 148s Setting up readline-common (8.2-3.1) ... 148s Processing triggers for man-db (2.12.0-3) ... 149s Processing triggers for install-info (7.1-3) ... 149s Processing triggers for libc-bin (2.39-0ubuntu2) ... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 151s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 152s Reading package lists... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Calculating upgrade... 153s The following packages have been kept back: 153s curl 153s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 157s autopkgtest [17:48:55]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 157s autopkgtest [17:48:55]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-tfbstools 160s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tfbstools 1.40.0+dfsg-1 (dsc) [2469 B] 160s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tfbstools 1.40.0+dfsg-1 (tar) [118 kB] 160s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-tfbstools 1.40.0+dfsg-1 (diff) [3776 B] 161s gpgv: Signature made Fri Dec 1 09:56:07 2023 UTC 161s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 161s gpgv: issuer "tillea@rki.de" 161s gpgv: Can't check signature: No public key 161s dpkg-source: warning: cannot verify inline signature for ./r-bioc-tfbstools_1.40.0+dfsg-1.dsc: no acceptable signature found 162s autopkgtest [17:49:00]: testing package r-bioc-tfbstools version 1.40.0+dfsg-1 163s autopkgtest [17:49:01]: build not needed 164s autopkgtest [17:49:02]: test pkg-r-autopkgtest: preparing testbed 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Starting pkgProblemResolver with broken count: 0 167s Starting 2 pkgProblemResolver with broken count: 0 167s Done 168s The following additional packages will be installed: 168s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 168s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 168s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 168s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 168s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 168s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 168s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 168s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 168s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 168s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 168s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libgsl27 168s libgslcblas0 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 168s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 168s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 168s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 168s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 168s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 168s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 168s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 168s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 168s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 168s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 168s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 168s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 168s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 168s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 168s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 168s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 168s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 168s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 168s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics 168s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings 168s r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial 168s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 168s r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest 168s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 168s r-bioc-s4arrays r-bioc-s4vectors r-bioc-seqlogo r-bioc-sparsearray 168s r-bioc-summarizedexperiment r-bioc-tfbstools r-bioc-xvector r-bioc-zlibbioc 168s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 168s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 168s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-catools 168s r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark 168s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj 168s r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 168s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 168s r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue 168s r-cran-gtable r-cran-gtools r-cran-highr r-cran-hms r-cran-htmltools 168s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 168s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 168s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 168s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell 168s r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 168s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 168s r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits 168s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-r.methodss3 168s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 168s r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-rematch2 r-cran-reshape2 168s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 168s r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 168s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 168s r-cran-tfmpvalue r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb 168s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo 168s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto 168s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 168s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 168s Suggested packages: 168s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 168s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 168s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 168s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 168s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 168s libboost-context1.83-dev libboost-contract1.83-dev 168s libboost-coroutine1.83-dev libboost-date-time1.83-dev 168s libboost-exception1.83-dev libboost-fiber1.83-dev 168s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 168s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 168s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 168s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 168s libboost-numpy1.83-dev libboost-program-options1.83-dev 168s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 168s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 168s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 168s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 168s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 168s glibc-doc gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc 168s libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix libjs-mathjax-doc 168s liblzma-doc ncurses-doc readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs 168s texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc 168s texlive-latex-extra context wkhtmltopdf librsvg2-bin groff ghc php python 168s ruby libjs-katex citation-style-language-styles elpa-ess r-doc-info 168s | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 168s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 168s r-bioc-genefilter r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-all 168s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 168s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 168s r-cran-data.table r-bioc-genomicfeatures r-bioc-gviz r-bioc-hdf5array 168s r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger r-bioc-annotationhub 168s r-bioc-dexseq r-cran-markdown r-bioc-sparsematrixstats r-bioc-limma 168s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-spelling 168s r-cran-rpart r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab 168s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr r-cran-jpeg 168s r-cran-viridis r-cran-rmysql r-cran-lubridate r-cran-magick r-cran-sf 168s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 168s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 168s r-cran-rlecuyer r-cran-bench r-cran-here r-cran-purrr r-cran-tidyr 168s r-cran-plm r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk 168s xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview 168s texlive-latex-base-doc wp2latex 168s Recommended packages: 168s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 168s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 168s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 168s r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot r-cran-covr 168s r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench 168s r-cran-decor r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-gh 168s r-cran-unitizer r-cran-dplyr r-cran-rsvg r-cran-survival r-cran-hexbin 168s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 168s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 168s r-cran-vdiffr r-cran-cairo r-cran-markdown r-cran-jpeg r-cran-r.rsp 168s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 168s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 168s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 168s r-cran-doparallel r-cran-foreach r-cran-iterators r-cran-itertools 168s r-cran-quadprog r-cran-webfakes r-cran-future r-cran-purrr r-cran-pingr 168s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 168s r-cran-rvest r-cran-dichromat r-cran-data.table r-cran-formattable 168s r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 168s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 168s x11-xserver-utils 168s The following packages will be REMOVED: 168s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 168s The following NEW packages will be installed: 168s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 168s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 168s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 168s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 168s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 168s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 168s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 168s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 168s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 168s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 168s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 168s libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhwasan0 libice6 168s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 168s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 168s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 168s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 168s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 168s libjs-popper.js libjs-prettify libjs-sifter.js 168s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 168s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 168s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 168s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 168s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 168s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 168s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 168s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 168s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 168s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 168s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 168s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 168s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 168s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 168s r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome r-bioc-cner 168s r-bioc-delayedarray r-bioc-dirichletmultinomial r-bioc-genomeinfodb 168s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 168s r-bioc-go.db r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 168s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 168s r-bioc-s4vectors r-bioc-seqlogo r-bioc-sparsearray 168s r-bioc-summarizedexperiment r-bioc-tfbstools r-bioc-xvector r-bioc-zlibbioc 168s r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager 168s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown 168s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-catools 168s r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-commonmark 168s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj 168s r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 168s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 168s r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue 168s r-cran-gtable r-cran-gtools r-cran-highr r-cran-hms r-cran-htmltools 168s r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite 168s r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice 168s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 168s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell 168s r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 168s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr r-cran-png 168s r-cran-powerlaw r-cran-pracma r-cran-praise r-cran-prettyunits 168s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-r.methodss3 168s r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 168s r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-rematch2 r-cran-reshape2 168s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 168s r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 168s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 168s r-cran-tfmpvalue r-cran-tibble r-cran-tidyselect r-cran-tinytex r-cran-tzdb 168s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom r-cran-waldo 168s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto 168s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 168s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 168s The following packages will be upgraded: 168s curl 168s 1 upgraded, 318 newly installed, 5 to remove and 0 not upgraded. 168s Need to get 481 MB/481 MB of archives. 168s After this operation, 1488 MB of additional disk space will be used. 168s Get:1 /tmp/autopkgtest.vgt53Q/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 168s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 168s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 168s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 168s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 168s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 168s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 168s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 168s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 169s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 169s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 169s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 169s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 169s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 169s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 169s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 169s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 169s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 169s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 169s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 169s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 169s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 169s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 169s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 169s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 169s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 169s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 169s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 169s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 169s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 169s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 170s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 170s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 170s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 170s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 170s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 170s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 170s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 170s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 170s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 170s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 170s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 170s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 170s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 170s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 170s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 170s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 170s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 170s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 170s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 170s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 170s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 170s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 170s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 170s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 170s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 170s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 170s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 170s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 170s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 170s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 170s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 170s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 170s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 171s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 171s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 171s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 171s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 171s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 171s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 171s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 171s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 171s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 171s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 171s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libgslcblas0 arm64 2.7.1+dfsg-6ubuntu1 [72.5 kB] 171s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libgsl27 arm64 2.7.1+dfsg-6ubuntu1 [912 kB] 171s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 171s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 171s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 171s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 171s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 171s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 171s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 171s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 171s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 171s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 171s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 171s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 171s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 171s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 172s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 172s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 172s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 172s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 172s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 172s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 172s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 172s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 172s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 172s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 172s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 172s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 172s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 172s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 172s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 172s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 172s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 172s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 172s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 173s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 173s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 173s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 173s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 173s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 173s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 173s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 173s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 173s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 173s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 173s Get:120 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 173s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 173s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 173s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 173s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 173s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 173s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 173s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 173s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 173s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 173s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 173s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 173s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 173s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 173s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 173s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 173s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 173s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 173s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 173s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 173s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 173s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 173s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 173s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 173s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 173s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 173s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 174s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 174s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 174s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 174s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 174s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 174s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 174s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 174s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 174s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 174s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 174s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 174s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 174s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 175s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 175s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 175s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 175s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 175s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 175s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 175s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 175s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 175s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 175s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 175s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 175s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 175s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 175s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 175s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 175s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 175s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 175s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 175s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 175s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 175s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 175s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 175s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 175s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 175s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 175s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 175s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 175s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 175s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 175s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 175s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 175s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 175s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 175s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 176s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 176s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 177s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 177s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 177s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 177s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 177s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 177s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 177s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 177s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 178s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 178s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 178s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 178s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 178s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 178s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 178s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 178s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 178s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 178s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 178s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 178s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 178s Get:216 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 178s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 178s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 178s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 178s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 178s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 178s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 179s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 179s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 179s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 179s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 179s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 179s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 179s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 179s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 179s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 179s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 179s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 179s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 179s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 179s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 179s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 179s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 179s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 179s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 179s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 179s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 179s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 179s Get:244 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 179s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 179s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 180s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 180s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 183s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 183s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 183s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 183s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 183s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 183s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 183s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 183s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 183s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 183s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 183s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 183s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 183s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 183s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 184s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 184s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 184s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 184s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 184s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 184s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 184s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 184s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 184s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 184s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 184s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 184s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 184s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 184s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 184s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 184s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 184s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 184s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 184s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 184s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 184s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 184s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 184s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 184s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 185s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 185s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 185s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 185s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 185s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 185s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 185s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 185s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pracma all 2.4.4-1 [1690 kB] 185s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-powerlaw all 0.80.0-1 [3727 kB] 185s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 186s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 186s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 186s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 186s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-cner arm64 1.38.0+dfsg-2 [9018 kB] 186s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dirichletmultinomial arm64 1.44.0-1 [613 kB] 186s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-seqlogo all 1.68.0+dfsg-1 [163 kB] 186s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB] 186s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 186s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tfmpvalue arm64 0.0.9-1 [54.3 kB] 186s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tfbstools arm64 1.40.0+dfsg-1 [1003 kB] 187s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 187s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 187s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 187s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 187s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 187s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 187s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 187s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 187s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 187s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 187s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 187s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 187s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 189s Preconfiguring packages ... 189s Fetched 481 MB in 19s (25.3 MB/s) 189s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 189s wget depends on libpsl5 (>= 0.16.0). 189s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 189s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 189s 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 189s Removing libpsl5:arm64 (0.21.2-1build1) ... 189s Selecting previously unselected package libpsl5t64:arm64. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 189s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 189s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 189s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 189s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 189s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 189s Selecting previously unselected package libcurl4t64:arm64. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 189s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 189s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 189s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 189s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 189s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 189s 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 189s Removing libpng16-16:arm64 (1.6.43-1) ... 189s Selecting previously unselected package libpng16-16t64:arm64. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 189s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 189s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 189s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 189s parted depends on libreadline8 (>= 6.0). 189s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 189s gpgsm depends on libreadline8 (>= 6.0). 189s gpgconf depends on libreadline8 (>= 6.0). 189s gpg depends on libreadline8 (>= 6.0). 189s gawk depends on libreadline8 (>= 6.0). 189s fdisk depends on libreadline8 (>= 6.0). 189s 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 190s Removing libreadline8:arm64 (8.2-3) ... 190s Selecting previously unselected package libreadline8t64:arm64. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 190s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 190s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 190s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 190s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 190s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 190s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 190s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 190s lsof depends on libtirpc3 (>= 1.0.2). 190s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 190s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 190s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 190s iproute2 depends on libtirpc3 (>= 1.0.2). 190s 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 190s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 190s Selecting previously unselected package libtirpc3t64:arm64. 190s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 190s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 190s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 190s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 190s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 190s Selecting previously unselected package libc-dev-bin. 190s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 190s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 190s Selecting previously unselected package linux-libc-dev:arm64. 190s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 190s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 190s Selecting previously unselected package libcrypt-dev:arm64. 190s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 190s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 191s Selecting previously unselected package libtirpc-dev:arm64. 191s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 191s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 191s Selecting previously unselected package libnsl-dev:arm64. 191s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 191s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 191s Selecting previously unselected package rpcsvc-proto. 191s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 191s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 191s Selecting previously unselected package libc6-dev:arm64. 191s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 191s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 191s Selecting previously unselected package libisl23:arm64. 191s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 191s Unpacking libisl23:arm64 (0.26-3) ... 191s Selecting previously unselected package libmpc3:arm64. 191s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 191s Unpacking libmpc3:arm64 (1.3.1-1) ... 191s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 191s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 191s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 191s Selecting previously unselected package cpp-13. 191s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 191s Unpacking cpp-13 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Selecting previously unselected package libatomic1:arm64. 192s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libasan8:arm64. 192s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package liblsan0:arm64. 192s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libtsan2:arm64. 192s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libubsan1:arm64. 192s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libhwasan0:arm64. 192s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libgcc-13-dev:arm64. 192s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 192s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 192s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 192s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package gcc-13. 192s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 192s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package gcc-aarch64-linux-gnu. 193s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package gcc. 193s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking gcc (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package libstdc++-13-dev:arm64. 193s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package g++-13-aarch64-linux-gnu. 193s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package g++-13. 193s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 193s Unpacking g++-13 (13.2.0-17ubuntu2) ... 193s Selecting previously unselected package g++-aarch64-linux-gnu. 193s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package g++. 193s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 193s Unpacking g++ (4:13.2.0-7ubuntu1) ... 193s Selecting previously unselected package build-essential. 193s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 193s Unpacking build-essential (12.10ubuntu1) ... 193s Selecting previously unselected package dctrl-tools. 193s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 193s Unpacking dctrl-tools (2.24-3build2) ... 193s Selecting previously unselected package fonts-dejavu-mono. 193s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 193s Unpacking fonts-dejavu-mono (2.37-8) ... 193s Selecting previously unselected package fonts-dejavu-core. 193s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 193s Unpacking fonts-dejavu-core (2.37-8) ... 193s Selecting previously unselected package fontconfig-config. 193s Preparing to unpack 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fonts-lmodern. 194s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 194s Unpacking fonts-lmodern (2.005-1) ... 194s Selecting previously unselected package fonts-mathjax. 194s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 194s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 194s Selecting previously unselected package libgfortran5:arm64. 194s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 194s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 194s Selecting previously unselected package libgfortran-13-dev:arm64. 194s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 194s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gfortran-13. 194s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gfortran-aarch64-linux-gnu. 194s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package gfortran. 194s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package icu-devtools. 194s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 194s Unpacking icu-devtools (74.2-1ubuntu1) ... 194s Selecting previously unselected package javascript-common. 194s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 194s Unpacking javascript-common (11+nmu1) ... 194s Selecting previously unselected package libio-string-perl. 194s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 194s Unpacking libio-string-perl (1.08-4) ... 194s Selecting previously unselected package liblatex-tounicode-perl. 194s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 194s Unpacking liblatex-tounicode-perl (0.54-2) ... 194s Selecting previously unselected package libbibtex-parser-perl. 194s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 194s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 194s Selecting previously unselected package libblas3:arm64. 194s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 194s Unpacking libblas3:arm64 (3.12.0-3) ... 195s Selecting previously unselected package libblas-dev:arm64. 195s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 195s Unpacking libblas-dev:arm64 (3.12.0-3) ... 195s Selecting previously unselected package libboost1.83-dev:arm64. 195s Preparing to unpack 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libgslcblas0:arm64. 197s Preparing to unpack .../068-libgslcblas0_2.7.1+dfsg-6ubuntu1_arm64.deb ... 197s Unpacking libgslcblas0:arm64 (2.7.1+dfsg-6ubuntu1) ... 197s Selecting previously unselected package libgsl27:arm64. 197s Preparing to unpack .../069-libgsl27_2.7.1+dfsg-6ubuntu1_arm64.deb ... 197s Unpacking libgsl27:arm64 (2.7.1+dfsg-6ubuntu1) ... 197s Selecting previously unselected package libharfbuzz0b:arm64. 197s Preparing to unpack .../070-libharfbuzz0b_8.3.0-2_arm64.deb ... 197s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 197s Selecting previously unselected package x11-common. 197s Preparing to unpack .../071-x11-common_1%3a7.7+23ubuntu2_all.deb ... 197s Unpacking x11-common (1:7.7+23ubuntu2) ... 197s Selecting previously unselected package libice6:arm64. 197s Preparing to unpack .../072-libice6_2%3a1.0.10-1build2_arm64.deb ... 197s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 197s Selecting previously unselected package libicu-dev:arm64. 197s Preparing to unpack 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Selecting previously unselected package libjs-highlight.js. 198s Preparing to unpack .../084-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 198s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 198s Selecting previously unselected package libjs-jquery. 198s Preparing to unpack .../085-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 198s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 198s Selecting previously unselected package libjs-jquery-datatables. 198s Preparing to unpack .../086-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 198s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 198s Selecting previously unselected package libjs-sifter.js. 198s Preparing to unpack .../087-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 198s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 198s Selecting previously unselected package libjs-microplugin.js. 198s Preparing to unpack .../088-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 198s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 198s Selecting previously unselected package libjs-jquery-selectize.js. 198s Preparing to unpack .../089-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 198s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 198s Selecting previously unselected package libjs-jquery-ui. 198s Preparing to unpack .../090-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 198s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 198s Selecting previously unselected package libjs-json. 198s Preparing to unpack .../091-libjs-json_0~20221030+~1.0.8-1_all.deb ... 198s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 198s Selecting previously unselected package libjs-lunr. 198s Preparing to unpack .../092-libjs-lunr_2.3.9~dfsg-2_all.deb ... 198s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 198s Selecting previously unselected package libjs-prettify. 198s Preparing to unpack .../093-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 198s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 198s Selecting previously unselected package libkpathsea6:arm64. 198s Preparing to unpack .../094-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 198s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 198s Selecting previously unselected package liblapack3:arm64. 198s Preparing to unpack .../095-liblapack3_3.12.0-3_arm64.deb ... 198s Unpacking liblapack3:arm64 (3.12.0-3) ... 199s Selecting previously unselected package liblapack-dev:arm64. 199s Preparing to unpack .../096-liblapack-dev_3.12.0-3_arm64.deb ... 199s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 199s Selecting previously unselected package liblerc4:arm64. 199s Preparing to unpack .../097-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 199s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 199s Selecting previously unselected package liblua5.4-0:arm64. 199s Preparing to unpack .../098-liblua5.4-0_5.4.6-3_arm64.deb ... 199s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 199s Selecting previously unselected package libncurses-dev:arm64. 199s Preparing to unpack .../099-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 199s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 199s Selecting previously unselected package libthai-data. 199s Preparing to unpack .../100-libthai-data_0.1.29-2_all.deb ... 199s Unpacking libthai-data (0.1.29-2) ... 199s Selecting previously unselected package libthai0:arm64. 199s Preparing to unpack .../101-libthai0_0.1.29-2_arm64.deb ... 199s Unpacking libthai0:arm64 (0.1.29-2) ... 199s Selecting previously unselected package libpango-1.0-0:arm64. 199s Preparing to unpack .../102-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 199s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 199s Selecting previously unselected package libpangoft2-1.0-0:arm64. 199s Preparing to unpack .../103-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 199s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 199s Selecting previously unselected package libpangocairo-1.0-0:arm64. 199s Preparing to unpack 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200s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 200s Selecting previously unselected package libpcre2-dev:arm64. 200s Preparing to unpack .../110-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 200s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 200s Selecting previously unselected package libpkgconf3:arm64. 200s Preparing to unpack .../111-libpkgconf3_1.8.1-2_arm64.deb ... 200s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 200s Selecting previously unselected package zlib1g-dev:arm64. 200s Preparing to unpack .../112-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 200s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 200s Selecting previously unselected package libpng-dev:arm64. 200s Preparing to unpack .../113-libpng-dev_1.6.43-3_arm64.deb ... 200s Unpacking libpng-dev:arm64 (1.6.43-3) ... 200s Selecting previously unselected package libpotrace0:arm64. 200s Preparing to unpack .../114-libpotrace0_1.16-2_arm64.deb ... 200s Unpacking libpotrace0:arm64 (1.16-2) ... 200s Selecting previously unselected package libptexenc1:arm64. 200s Preparing to unpack .../115-libptexenc1_2023.20230311.66589-9_arm64.deb ... 200s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 200s Selecting previously unselected package libreadline-dev:arm64. 200s Preparing to unpack .../116-libreadline-dev_8.2-3.1_arm64.deb ... 200s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 200s Selecting previously unselected package libsharpyuv0:arm64. 200s Preparing to unpack .../117-libsharpyuv0_1.3.2-0.4_arm64.deb ... 200s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 200s Selecting previously unselected package libsm6:arm64. 200s Preparing to unpack .../118-libsm6_2%3a1.2.3-1build2_arm64.deb ... 200s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 200s Selecting previously unselected package libsynctex2:arm64. 200s Preparing to unpack .../119-libsynctex2_2023.20230311.66589-9_arm64.deb ... 200s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 200s Selecting previously unselected package libtcl8.6:arm64. 200s Preparing to unpack .../120-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 200s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 200s Selecting previously unselected package libteckit0:arm64. 200s Preparing to unpack .../121-libteckit0_2.5.12+ds1-1_arm64.deb ... 200s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 200s Selecting previously unselected package libtexlua53-5:arm64. 200s Preparing to unpack .../122-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 200s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 200s Selecting previously unselected package libjbig0:arm64. 200s Preparing to unpack .../123-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 200s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 200s Selecting previously unselected package libwebp7:arm64. 200s Preparing to unpack .../124-libwebp7_1.3.2-0.4_arm64.deb ... 200s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 200s Selecting previously unselected package libtiff6:arm64. 200s Preparing to unpack .../125-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 200s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 200s Selecting previously unselected package libxft2:arm64. 200s Preparing to unpack .../126-libxft2_2.3.6-1_arm64.deb ... 200s Unpacking libxft2:arm64 (2.3.6-1) ... 200s Selecting previously unselected package libxss1:arm64. 200s Preparing to unpack .../127-libxss1_1%3a1.2.3-1build2_arm64.deb ... 200s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 200s Selecting previously unselected package libtk8.6:arm64. 200s Preparing to unpack .../128-libtk8.6_8.6.13-2_arm64.deb ... 200s Unpacking libtk8.6:arm64 (8.6.13-2) ... 201s Selecting previously unselected package libxt6t64:arm64. 201s Preparing to unpack .../129-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 201s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 201s Selecting previously unselected package libxmu6:arm64. 201s Preparing to unpack .../130-libxmu6_2%3a1.1.3-3_arm64.deb ... 201s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 201s Selecting previously unselected package libxpm4:arm64. 201s Preparing to unpack .../131-libxpm4_1%3a3.5.17-1_arm64.deb ... 201s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 201s Selecting previously unselected package libxaw7:arm64. 201s Preparing to unpack .../132-libxaw7_2%3a1.0.14-1_arm64.deb ... 201s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 201s Selecting previously unselected package libxi6:arm64. 201s Preparing to unpack .../133-libxi6_2%3a1.8.1-1_arm64.deb ... 201s Unpacking libxi6:arm64 (2:1.8.1-1) ... 201s Selecting previously unselected package libzzip-0-13:arm64. 201s Preparing to unpack .../134-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 201s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 201s Selecting previously unselected package node-bootstrap-sass. 201s Preparing to unpack .../135-node-bootstrap-sass_3.4.3-2_all.deb ... 201s Unpacking node-bootstrap-sass (3.4.3-2) ... 201s Selecting previously unselected package node-html5shiv. 201s Preparing to unpack .../136-node-html5shiv_3.7.3+dfsg-5_all.deb ... 201s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 201s Selecting previously unselected package node-normalize.css. 201s Preparing to unpack .../137-node-normalize.css_8.0.1-5_all.deb ... 201s Unpacking node-normalize.css (8.0.1-5) ... 201s Selecting previously unselected package pandoc-data. 201s Preparing to unpack .../138-pandoc-data_3.1.3-1_all.deb ... 201s Unpacking pandoc-data (3.1.3-1) ... 201s Selecting previously unselected package pandoc. 201s Preparing to unpack .../139-pandoc_3.1.3+ds-2_arm64.deb ... 201s Unpacking pandoc (3.1.3+ds-2) ... 202s Selecting previously unselected package pkgconf-bin. 202s Preparing to unpack .../140-pkgconf-bin_1.8.1-2_arm64.deb ... 202s Unpacking pkgconf-bin (1.8.1-2) ... 202s Selecting previously unselected package pkgconf:arm64. 202s Preparing to unpack .../141-pkgconf_1.8.1-2_arm64.deb ... 202s Unpacking pkgconf:arm64 (1.8.1-2) ... 202s Selecting previously unselected package pkg-config:arm64. 202s Preparing to unpack .../142-pkg-config_1.8.1-2_arm64.deb ... 202s Unpacking pkg-config:arm64 (1.8.1-2) ... 202s Selecting previously unselected package zip. 202s Preparing to unpack .../143-zip_3.0-13_arm64.deb ... 202s Unpacking zip (3.0-13) ... 202s Selecting previously unselected package unzip. 202s Preparing to unpack .../144-unzip_6.0-28ubuntu3_arm64.deb ... 202s Unpacking unzip (6.0-28ubuntu3) ... 203s Selecting previously unselected package xdg-utils. 203s Preparing to unpack .../145-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 203s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 203s Selecting previously unselected package r-base-core. 203s Preparing to unpack .../146-r-base-core_4.3.3-2build1_arm64.deb ... 203s Unpacking r-base-core (4.3.3-2build1) ... 203s Selecting previously unselected package liblzma-dev:arm64. 204s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 204s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 204s Selecting previously unselected package r-base-dev. 204s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 204s Unpacking r-base-dev (4.3.3-2build1) ... 204s Selecting previously unselected package pkg-r-autopkgtest. 204s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 204s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 204s Selecting previously unselected package r-bioc-biocgenerics. 204s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 204s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 204s Selecting previously unselected package r-bioc-biobase. 204s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 204s Unpacking r-bioc-biobase (2.62.0-1) ... 204s Selecting previously unselected package r-bioc-s4vectors. 204s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 204s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 204s Selecting previously unselected package r-bioc-iranges. 204s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 204s Unpacking r-bioc-iranges (2.36.0-1) ... 204s Selecting previously unselected package r-cran-dbi. 204s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 204s Unpacking r-cran-dbi (1.2.2-1) ... 204s Selecting previously unselected package r-cran-bit. 204s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 204s Unpacking r-cran-bit (4.0.5-1) ... 204s Selecting previously unselected package r-cran-bit64. 204s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 204s Unpacking r-cran-bit64 (4.0.5-1) ... 204s Selecting previously unselected package r-cran-rlang. 204s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 204s Unpacking r-cran-rlang (1.1.3-1) ... 204s Selecting previously unselected package r-cran-cli. 204s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 204s Unpacking r-cran-cli (3.6.2-1) ... 205s Selecting previously unselected package r-cran-glue. 205s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 205s Unpacking r-cran-glue (1.7.0-1) ... 205s Selecting previously unselected package r-cran-lifecycle. 205s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 205s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 205s Selecting previously unselected package r-cran-vctrs. 205s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 205s Unpacking r-cran-vctrs (0.6.5-1) ... 205s Selecting previously unselected package r-cran-blob. 205s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 205s Unpacking r-cran-blob (1.2.4-1) ... 205s Selecting previously unselected package r-cran-fastmap. 205s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 205s Unpacking r-cran-fastmap (1.1.1-1) ... 205s Selecting previously unselected package r-cran-cachem. 205s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 205s Unpacking r-cran-cachem (1.0.8-1) ... 205s Selecting previously unselected package r-cran-memoise. 205s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 205s Unpacking r-cran-memoise (2.0.1-1) ... 205s Selecting previously unselected package r-cran-pkgconfig. 205s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 205s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 205s Selecting previously unselected package r-cran-plogr. 205s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 205s Unpacking r-cran-plogr (0.2.0-3build1) ... 205s Selecting previously unselected package r-cran-cpp11. 205s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 205s Unpacking r-cran-cpp11 (0.4.7-1) ... 205s Selecting previously unselected package r-cran-rsqlite. 205s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 205s Unpacking r-cran-rsqlite (2.3.4-1) ... 205s Selecting previously unselected package r-cran-curl. 205s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 205s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-jsonlite. 206s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 206s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 206s Selecting previously unselected package r-cran-mime. 206s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 206s Unpacking r-cran-mime (0.12-1) ... 206s Selecting previously unselected package r-cran-sys. 206s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 206s Unpacking r-cran-sys (3.4.2-1) ... 206s Selecting previously unselected package r-cran-askpass. 206s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 206s Unpacking r-cran-askpass (1.2.0-1) ... 206s Selecting previously unselected package r-cran-openssl. 206s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 206s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 206s Selecting previously unselected package r-cran-r6. 206s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 206s Unpacking r-cran-r6 (2.5.1-1) ... 206s Selecting previously unselected package r-cran-httr. 206s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 206s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 206s Selecting previously unselected package r-cran-png. 206s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 206s Unpacking r-cran-png (0.1-8-1) ... 206s Selecting previously unselected package r-bioc-zlibbioc. 206s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 206s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 206s Selecting previously unselected package r-bioc-xvector. 206s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 206s Unpacking r-bioc-xvector (0.42.0-1) ... 206s Selecting previously unselected package r-cran-bitops. 206s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 206s Unpacking r-cran-bitops (1.0-7-1) ... 206s Selecting previously unselected package r-cran-rcurl. 207s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 207s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 207s Selecting previously unselected package r-bioc-genomeinfodbdata. 207s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 207s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 207s Selecting previously unselected package r-bioc-genomeinfodb. 207s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 207s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 207s Selecting previously unselected package r-cran-crayon. 207s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 207s Unpacking r-cran-crayon (1.5.2-1) ... 207s Selecting previously unselected package r-bioc-biostrings. 207s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 207s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 207s Selecting previously unselected package r-bioc-keggrest. 207s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 207s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 207s Selecting previously unselected package r-bioc-annotationdbi. 207s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 207s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 207s Selecting previously unselected package r-cran-xml. 207s Preparing to unpack .../189-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 207s Unpacking r-cran-xml (3.99-0.16.1-1) ... 207s Selecting previously unselected package r-cran-xtable. 207s Preparing to unpack .../190-r-cran-xtable_1%3a1.8-4-2_all.deb ... 207s Unpacking r-cran-xtable (1:1.8-4-2) ... 207s Selecting previously unselected package r-bioc-annotate. 207s Preparing to unpack .../191-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 207s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 207s Selecting previously unselected package r-bioc-biocio. 207s Preparing to unpack .../192-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 207s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 207s Selecting previously unselected package r-cran-formatr. 207s Preparing to unpack .../193-r-cran-formatr_1.14-1_all.deb ... 207s Unpacking r-cran-formatr (1.14-1) ... 207s Selecting previously unselected package r-cran-lambda.r. 207s Preparing to unpack .../194-r-cran-lambda.r_1.2.4-2build1_all.deb ... 207s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 207s Selecting previously unselected package r-cran-futile.options. 208s Preparing to unpack .../195-r-cran-futile.options_1.0.1-3build1_all.deb ... 208s Unpacking r-cran-futile.options (1.0.1-3build1) ... 208s Selecting previously unselected package r-cran-futile.logger. 208s Preparing to unpack .../196-r-cran-futile.logger_1.4.3-4build1_all.deb ... 208s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 208s Selecting previously unselected package r-cran-snow. 208s Preparing to unpack .../197-r-cran-snow_1%3a0.4.4-2_all.deb ... 208s Unpacking r-cran-snow (1:0.4.4-2) ... 208s Selecting previously unselected package r-cran-codetools. 208s Preparing to unpack .../198-r-cran-codetools_0.2-19-1_all.deb ... 208s Unpacking r-cran-codetools (0.2-19-1) ... 208s Selecting previously unselected package r-cran-bh. 208s Preparing to unpack .../199-r-cran-bh_1.84.0-1_all.deb ... 208s Unpacking r-cran-bh (1.84.0-1) ... 208s Selecting previously unselected package r-bioc-biocparallel. 208s Preparing to unpack .../200-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 208s Unpacking r-bioc-biocparallel (1.36.0-1) ... 208s Selecting previously unselected package r-cran-base64enc. 208s Preparing to unpack .../201-r-cran-base64enc_0.1-3-3_arm64.deb ... 208s Unpacking r-cran-base64enc (0.1-3-3) ... 208s Selecting previously unselected package r-cran-digest. 208s Preparing to unpack .../202-r-cran-digest_0.6.34-1_arm64.deb ... 208s Unpacking r-cran-digest (0.6.34-1) ... 208s Selecting previously unselected package r-cran-ellipsis. 208s Preparing to unpack .../203-r-cran-ellipsis_0.3.2-2_arm64.deb ... 208s Unpacking r-cran-ellipsis (0.3.2-2) ... 208s Selecting previously unselected package r-cran-htmltools. 208s Preparing to unpack .../204-r-cran-htmltools_0.5.7-1_arm64.deb ... 208s Unpacking r-cran-htmltools (0.5.7-1) ... 208s Selecting previously unselected package r-cran-evaluate. 208s Preparing to unpack .../205-r-cran-evaluate_0.23-1_all.deb ... 208s Unpacking r-cran-evaluate (0.23-1) ... 208s Selecting previously unselected package r-cran-xfun. 208s Preparing to unpack .../206-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 208s Unpacking r-cran-xfun (0.41+dfsg-1) ... 208s Selecting previously unselected package r-cran-highr. 208s Preparing to unpack .../207-r-cran-highr_0.10+dfsg-1_all.deb ... 208s Unpacking r-cran-highr (0.10+dfsg-1) ... 208s Selecting previously unselected package r-cran-yaml. 208s Preparing to unpack .../208-r-cran-yaml_2.3.8-1_arm64.deb ... 208s Unpacking r-cran-yaml (2.3.8-1) ... 208s Selecting previously unselected package libjs-mathjax. 208s Preparing to unpack .../209-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 208s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 209s Selecting previously unselected package r-cran-knitr. 209s Preparing to unpack .../210-r-cran-knitr_1.45+dfsg-1_all.deb ... 209s Unpacking r-cran-knitr (1.45+dfsg-1) ... 209s Selecting previously unselected package r-cran-jquerylib. 209s Preparing to unpack .../211-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 209s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 209s Selecting previously unselected package r-cran-fs. 209s Preparing to unpack .../212-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 209s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 209s Selecting previously unselected package r-cran-rappdirs. 209s Preparing to unpack .../213-r-cran-rappdirs_0.3.3-1_arm64.deb ... 209s Unpacking r-cran-rappdirs (0.3.3-1) ... 209s Selecting previously unselected package r-cran-sass. 209s Preparing to unpack .../214-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 209s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 209s Selecting previously unselected package r-cran-bslib. 209s Preparing to unpack .../215-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 209s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 209s Selecting previously unselected package r-cran-fontawesome. 209s Preparing to unpack .../216-r-cran-fontawesome_0.5.2-1_all.deb ... 209s Unpacking r-cran-fontawesome (0.5.2-1) ... 209s Selecting previously unselected package r-cran-magrittr. 209s Preparing to unpack .../217-r-cran-magrittr_2.0.3-1_arm64.deb ... 209s Unpacking r-cran-magrittr (2.0.3-1) ... 209s Selecting previously unselected package r-cran-stringi. 209s Preparing to unpack .../218-r-cran-stringi_1.8.3-1_arm64.deb ... 209s Unpacking r-cran-stringi (1.8.3-1) ... 209s Selecting previously unselected package r-cran-stringr. 210s Preparing to unpack .../219-r-cran-stringr_1.5.1-1_all.deb ... 210s Unpacking r-cran-stringr (1.5.1-1) ... 210s Selecting previously unselected package r-cran-tinytex. 210s Preparing to unpack .../220-r-cran-tinytex_0.49-1_all.deb ... 210s Unpacking r-cran-tinytex (0.49-1) ... 210s Selecting previously unselected package libjs-modernizr. 210s Preparing to unpack .../221-libjs-modernizr_2.6.2+ds1-5_all.deb ... 210s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 210s Selecting previously unselected package r-cran-littler. 210s Preparing to unpack .../222-r-cran-littler_0.3.19-1_arm64.deb ... 210s Unpacking r-cran-littler (0.3.19-1) ... 210s Selecting previously unselected package r-cran-pkgkitten. 210s Preparing to unpack .../223-r-cran-pkgkitten_0.2.3-1_all.deb ... 210s Unpacking r-cran-pkgkitten (0.2.3-1) ... 210s Selecting previously unselected package r-cran-rcpp. 210s Preparing to unpack .../224-r-cran-rcpp_1.0.12-1_arm64.deb ... 210s Unpacking r-cran-rcpp (1.0.12-1) ... 210s Selecting previously unselected package r-cran-later. 210s Preparing to unpack .../225-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 210s Unpacking r-cran-later (1.3.2+dfsg-1) ... 210s Selecting previously unselected package r-cran-promises. 210s Preparing to unpack .../226-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 210s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 210s Selecting previously unselected package r-cran-httpuv. 210s Preparing to unpack .../227-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 210s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 210s Selecting previously unselected package r-cran-sourcetools. 210s Preparing to unpack .../228-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 210s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 210s Selecting previously unselected package r-cran-withr. 210s Preparing to unpack .../229-r-cran-withr_2.5.0-1_all.deb ... 210s Unpacking r-cran-withr (2.5.0-1) ... 210s Selecting previously unselected package r-cran-commonmark. 210s Preparing to unpack .../230-r-cran-commonmark_1.9.1-1_arm64.deb ... 210s Unpacking r-cran-commonmark (1.9.1-1) ... 210s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 210s Preparing to unpack .../231-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 210s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 210s Selecting previously unselected package r-cran-shiny. 210s Preparing to unpack .../232-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 210s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 210s Selecting previously unselected package r-cran-rmarkdown. 210s Preparing to unpack .../233-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 210s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 210s Selecting previously unselected package r-cran-bookdown. 210s Preparing to unpack .../234-r-cran-bookdown_0.37+dfsg-1_all.deb ... 210s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 211s Selecting previously unselected package r-cran-biocmanager. 211s Preparing to unpack .../235-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 211s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 211s Selecting previously unselected package tex-common. 211s Preparing to unpack .../236-tex-common_6.18_all.deb ... 211s Unpacking tex-common (6.18) ... 211s Selecting previously unselected package t1utils. 211s Preparing to unpack .../237-t1utils_1.41-4build2_arm64.deb ... 211s Unpacking t1utils (1.41-4build2) ... 211s Selecting previously unselected package texlive-binaries. 211s Preparing to unpack .../238-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 211s Unpacking texlive-binaries (2023.20230311.66589-9) ... 211s Selecting previously unselected package texlive-base. 211s Preparing to unpack .../239-texlive-base_2023.20240207-1_all.deb ... 211s Unpacking texlive-base (2023.20240207-1) ... 212s Selecting previously unselected package texlive-latex-base. 212s Preparing to unpack .../240-texlive-latex-base_2023.20240207-1_all.deb ... 212s Unpacking texlive-latex-base (2023.20240207-1) ... 212s Selecting previously unselected package texlive-bibtex-extra. 212s Preparing to unpack .../241-texlive-bibtex-extra_2023.20240207-1_all.deb ... 212s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 216s Selecting previously unselected package r-bioc-biocstyle. 216s Preparing to unpack .../242-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 216s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 216s Selecting previously unselected package r-bioc-genomicranges. 216s Preparing to unpack .../243-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 216s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 216s Selecting previously unselected package r-bioc-rhtslib. 216s Preparing to unpack .../244-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 216s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 216s Selecting previously unselected package r-bioc-rsamtools. 216s Preparing to unpack .../245-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 216s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 216s Selecting previously unselected package r-cran-matrixstats. 216s Preparing to unpack .../246-r-cran-matrixstats_1.2.0-1_arm64.deb ... 216s Unpacking r-cran-matrixstats (1.2.0-1) ... 216s Selecting previously unselected package r-bioc-matrixgenerics. 216s Preparing to unpack .../247-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 216s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 217s Selecting previously unselected package r-cran-lattice. 217s Preparing to unpack .../248-r-cran-lattice_0.22-5-1_arm64.deb ... 217s Unpacking r-cran-lattice (0.22-5-1) ... 217s Selecting previously unselected package r-cran-matrix. 217s Preparing to unpack .../249-r-cran-matrix_1.6-5-1_arm64.deb ... 217s Unpacking r-cran-matrix (1.6-5-1) ... 217s Selecting previously unselected package r-cran-abind. 217s Preparing to unpack .../250-r-cran-abind_1.4-5-2_all.deb ... 217s Unpacking r-cran-abind (1.4-5-2) ... 217s Selecting previously unselected package r-bioc-s4arrays. 217s Preparing to unpack .../251-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 217s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 217s Selecting previously unselected package r-bioc-sparsearray. 217s Preparing to unpack .../252-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 217s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 217s Selecting previously unselected package r-bioc-delayedarray. 217s Preparing to unpack .../253-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 217s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 217s Selecting previously unselected package r-bioc-summarizedexperiment. 217s Preparing to unpack .../254-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 217s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 217s Selecting previously unselected package r-bioc-genomicalignments. 217s Preparing to unpack .../255-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 217s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 217s Selecting previously unselected package r-cran-rjson. 217s Preparing to unpack .../256-r-cran-rjson_0.2.21-1_arm64.deb ... 217s Unpacking r-cran-rjson (0.2.21-1) ... 217s Selecting previously unselected package r-cran-restfulr. 217s Preparing to unpack .../257-r-cran-restfulr_0.0.15-1_arm64.deb ... 217s Unpacking r-cran-restfulr (0.0.15-1) ... 217s Selecting previously unselected package r-bioc-rtracklayer. 217s Preparing to unpack .../258-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 217s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 217s Selecting previously unselected package r-bioc-bsgenome. 217s Preparing to unpack .../259-r-bioc-bsgenome_1.70.2-1_all.deb ... 217s Unpacking r-bioc-bsgenome (1.70.2-1) ... 217s Selecting previously unselected package r-cran-clipr. 217s Preparing to unpack .../260-r-cran-clipr_0.8.0-1_all.deb ... 217s Unpacking r-cran-clipr (0.8.0-1) ... 217s Selecting previously unselected package r-cran-hms. 217s Preparing to unpack .../261-r-cran-hms_1.1.3-1_all.deb ... 217s Unpacking r-cran-hms (1.1.3-1) ... 217s Selecting previously unselected package r-cran-fansi. 217s Preparing to unpack .../262-r-cran-fansi_1.0.5-1_arm64.deb ... 217s Unpacking r-cran-fansi (1.0.5-1) ... 217s Selecting previously unselected package r-cran-utf8. 218s Preparing to unpack .../263-r-cran-utf8_1.2.4-1_arm64.deb ... 218s Unpacking r-cran-utf8 (1.2.4-1) ... 218s Selecting previously unselected package r-cran-pillar. 218s Preparing to unpack .../264-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 218s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 218s Selecting previously unselected package r-cran-tibble. 218s Preparing to unpack .../265-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 218s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 218s Selecting previously unselected package r-cran-tidyselect. 218s Preparing to unpack .../266-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 218s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 218s Selecting previously unselected package r-cran-tzdb. 218s Preparing to unpack .../267-r-cran-tzdb_0.4.0-2_arm64.deb ... 218s Unpacking r-cran-tzdb (0.4.0-2) ... 218s Selecting previously unselected package r-cran-prettyunits. 218s Preparing to unpack .../268-r-cran-prettyunits_1.2.0-1_all.deb ... 218s Unpacking r-cran-prettyunits (1.2.0-1) ... 218s Selecting previously unselected package r-cran-progress. 218s Preparing to unpack .../269-r-cran-progress_1.2.3-1_all.deb ... 218s Unpacking r-cran-progress (1.2.3-1) ... 218s Selecting previously unselected package r-cran-vroom. 218s Preparing to unpack .../270-r-cran-vroom_1.6.5-1_arm64.deb ... 218s Unpacking r-cran-vroom (1.6.5-1) ... 218s Selecting previously unselected package r-cran-readr. 218s Preparing to unpack .../271-r-cran-readr_2.1.5-1_arm64.deb ... 218s Unpacking r-cran-readr (2.1.5-1) ... 218s Selecting previously unselected package r-cran-plyr. 218s Preparing to unpack .../272-r-cran-plyr_1.8.9-1_arm64.deb ... 218s Unpacking r-cran-plyr (1.8.9-1) ... 218s Selecting previously unselected package r-cran-reshape2. 218s Preparing to unpack .../273-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 218s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 218s Selecting previously unselected package r-cran-gtable. 218s Preparing to unpack .../274-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 218s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 218s Selecting previously unselected package r-cran-isoband. 219s Preparing to unpack .../275-r-cran-isoband_0.2.7-1_arm64.deb ... 219s Unpacking r-cran-isoband (0.2.7-1) ... 219s Selecting previously unselected package r-cran-mass. 219s Preparing to unpack .../276-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 219s Unpacking r-cran-mass (7.3-60.0.1-1) ... 219s Selecting previously unselected package r-cran-nlme. 219s Preparing to unpack .../277-r-cran-nlme_3.1.164-1_arm64.deb ... 219s Unpacking r-cran-nlme (3.1.164-1) ... 219s Selecting previously unselected package r-cran-mgcv. 219s Preparing to unpack .../278-r-cran-mgcv_1.9-1-1_arm64.deb ... 219s Unpacking r-cran-mgcv (1.9-1-1) ... 219s Selecting previously unselected package r-cran-farver. 219s Preparing to unpack .../279-r-cran-farver_2.1.1-1_arm64.deb ... 219s Unpacking r-cran-farver (2.1.1-1) ... 219s Selecting previously unselected package r-cran-labeling. 219s Preparing to unpack .../280-r-cran-labeling_0.4.3-1_all.deb ... 219s Unpacking r-cran-labeling (0.4.3-1) ... 219s Selecting previously unselected package r-cran-colorspace. 219s Preparing to unpack .../281-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 219s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 219s Selecting previously unselected package r-cran-munsell. 220s Preparing to unpack .../282-r-cran-munsell_0.5.0-2build1_all.deb ... 220s Unpacking r-cran-munsell (0.5.0-2build1) ... 220s Selecting previously unselected package r-cran-rcolorbrewer. 220s Preparing to unpack .../283-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 220s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 220s Selecting previously unselected package r-cran-viridislite. 220s Preparing to unpack .../284-r-cran-viridislite_0.4.2-2_all.deb ... 220s Unpacking r-cran-viridislite (0.4.2-2) ... 220s Selecting previously unselected package r-cran-scales. 220s Preparing to unpack .../285-r-cran-scales_1.3.0-1_all.deb ... 220s Unpacking r-cran-scales (1.3.0-1) ... 220s Selecting previously unselected package r-cran-ggplot2. 220s Preparing to unpack .../286-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 220s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 220s Selecting previously unselected package r-cran-pracma. 220s Preparing to unpack .../287-r-cran-pracma_2.4.4-1_all.deb ... 220s Unpacking r-cran-pracma (2.4.4-1) ... 220s Selecting previously unselected package r-cran-powerlaw. 220s Preparing to unpack .../288-r-cran-powerlaw_0.80.0-1_all.deb ... 220s Unpacking r-cran-powerlaw (0.80.0-1) ... 220s Selecting previously unselected package r-bioc-go.db. 220s Preparing to unpack .../289-r-bioc-go.db_3.18.0-1_all.deb ... 220s Unpacking r-bioc-go.db (3.18.0-1) ... 221s Selecting previously unselected package r-cran-r.methodss3. 221s Preparing to unpack .../290-r-cran-r.methodss3_1.8.2-1_all.deb ... 221s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 221s Selecting previously unselected package r-cran-r.oo. 221s Preparing to unpack .../291-r-cran-r.oo_1.26.0-1_all.deb ... 221s Unpacking r-cran-r.oo (1.26.0-1) ... 221s Selecting previously unselected package r-cran-r.utils. 221s Preparing to unpack .../292-r-cran-r.utils_2.12.3-1_all.deb ... 221s Unpacking r-cran-r.utils (2.12.3-1) ... 221s Selecting previously unselected package r-bioc-cner. 221s Preparing to unpack .../293-r-bioc-cner_1.38.0+dfsg-2_arm64.deb ... 221s Unpacking r-bioc-cner (1.38.0+dfsg-2) ... 221s Selecting previously unselected package r-bioc-dirichletmultinomial. 221s Preparing to unpack .../294-r-bioc-dirichletmultinomial_1.44.0-1_arm64.deb ... 221s Unpacking r-bioc-dirichletmultinomial (1.44.0-1) ... 221s Selecting previously unselected package r-bioc-seqlogo. 221s Preparing to unpack .../295-r-bioc-seqlogo_1.68.0+dfsg-1_all.deb ... 221s Unpacking r-bioc-seqlogo (1.68.0+dfsg-1) ... 221s Selecting previously unselected package r-cran-catools. 221s Preparing to unpack .../296-r-cran-catools_1.18.2-1_arm64.deb ... 221s Unpacking r-cran-catools (1.18.2-1) ... 221s Selecting previously unselected package r-cran-gtools. 221s Preparing to unpack .../297-r-cran-gtools_3.9.5-1_arm64.deb ... 221s Unpacking r-cran-gtools (3.9.5-1) ... 221s Selecting previously unselected package r-cran-tfmpvalue. 221s Preparing to unpack .../298-r-cran-tfmpvalue_0.0.9-1_arm64.deb ... 221s Unpacking r-cran-tfmpvalue (0.0.9-1) ... 221s Selecting previously unselected package r-bioc-tfbstools. 221s Preparing to unpack .../299-r-bioc-tfbstools_1.40.0+dfsg-1_arm64.deb ... 221s Unpacking r-bioc-tfbstools (1.40.0+dfsg-1) ... 221s Selecting previously unselected package r-cran-brio. 221s Preparing to unpack .../300-r-cran-brio_1.1.4-1_arm64.deb ... 221s Unpacking r-cran-brio (1.1.4-1) ... 221s Selecting previously unselected package r-cran-ps. 222s Preparing to unpack .../301-r-cran-ps_1.7.6-1_arm64.deb ... 222s Unpacking r-cran-ps (1.7.6-1) ... 222s Selecting previously unselected package r-cran-processx. 222s Preparing to unpack .../302-r-cran-processx_3.8.3-1_arm64.deb ... 222s Unpacking r-cran-processx (3.8.3-1) ... 222s Selecting previously unselected package r-cran-callr. 222s Preparing to unpack .../303-r-cran-callr_3.7.3-2_all.deb ... 222s Unpacking r-cran-callr (3.7.3-2) ... 222s Selecting previously unselected package r-cran-desc. 222s Preparing to unpack .../304-r-cran-desc_1.4.3-1_all.deb ... 222s Unpacking r-cran-desc (1.4.3-1) ... 222s Selecting previously unselected package r-cran-diffobj. 222s Preparing to unpack .../305-r-cran-diffobj_0.3.5-1_arm64.deb ... 222s Unpacking r-cran-diffobj (0.3.5-1) ... 222s Selecting previously unselected package r-cran-pkgbuild. 222s Preparing to unpack .../306-r-cran-pkgbuild_1.4.3-1_all.deb ... 222s Unpacking r-cran-pkgbuild (1.4.3-1) ... 222s Selecting previously unselected package r-cran-rprojroot. 222s Preparing to unpack .../307-r-cran-rprojroot_2.0.4-1_all.deb ... 222s Unpacking r-cran-rprojroot (2.0.4-1) 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(3.4.4+dfsg-1) ... 229s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 229s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 229s Setting up r-cran-rematch2 (2.1.2-2build1) ... 229s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 229s Setting up r-cran-fontawesome (0.5.2-1) ... 229s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 229s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 229s Setting up r-cran-readr (2.1.5-1) ... 229s Setting up r-cran-waldo (0.5.2-1build1) ... 229s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 229s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 229s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 229s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 229s Setting up r-bioc-annotationdbi (1.64.1-1) ... 229s Setting up r-bioc-go.db (3.18.0-1) ... 229s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 229s Setting up r-cran-testthat (3.2.1-1) ... 229s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 229s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 229s 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This may take some time... done. 231s Running mktexlsr /var/lib/texmf ... done. 231s Building format(s) --all. 271s This may take some time... done. 290s (Reading database ... 127191 files and directories currently installed.) 290s Removing autopkgtest-satdep (0) ... 291s autopkgtest [17:51:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 291s autopkgtest [17:51:09]: test pkg-r-autopkgtest: [----------------------- 291s Test: Try to load the R library TFBSTools 292s 292s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 292s Copyright (C) 2024 The R Foundation for Statistical Computing 292s Platform: aarch64-unknown-linux-gnu (64-bit) 292s 292s R is free software and comes with ABSOLUTELY NO WARRANTY. 292s You are welcome to redistribute it under certain conditions. 292s Type 'license()' or 'licence()' for distribution details. 292s 292s R is a collaborative project with many contributors. 292s Type 'contributors()' for more information and 292s 'citation()' on how to cite R or R packages in publications. 292s 292s Type 'demo()' for some demos, 'help()' for on-line help, or 292s 'help.start()' for an HTML browser interface to help. 292s Type 'q()' to quit R. 292s 292s > library('TFBSTools') 304s 305s > 305s > 305s Other tests are currently unsupported! 305s They will be progressively added. 306s autopkgtest [17:51:24]: test pkg-r-autopkgtest: -----------------------] 306s pkg-r-autopkgtest PASS 306s autopkgtest [17:51:24]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 307s autopkgtest [17:51:25]: @@@@@@@@@@@@@@@@@@@@ summary 307s pkg-r-autopkgtest PASS 318s Creating nova instance adt-noble-arm64-r-bioc-tfbstools-20240316-174618-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...