0s autopkgtest [17:45:59]: starting date and time: 2024-03-16 17:45:59+0000 0s autopkgtest [17:45:59]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:45:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.5mnrlw9z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-summarizedexperiment --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-2.secgroup --name adt-noble-arm64-r-bioc-summarizedexperiment-20240316-174559-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [17:47:32]: testbed dpkg architecture: arm64 94s autopkgtest [17:47:33]: testbed apt version: 2.7.12 94s autopkgtest [17:47:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 95s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 95s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 95s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 95s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 95s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 95s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 95s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 95s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 97s Fetched 9060 kB in 2s (5272 kB/s) 97s Reading package lists... 99s Reading package lists... 100s Building dependency tree... 100s Reading state information... 100s Calculating upgrade... 101s The following packages will be REMOVED: 101s libglib2.0-0 libssl3 101s The following NEW packages will be installed: 101s libglib2.0-0t64 libssl3t64 xdg-user-dirs 101s The following packages have been kept back: 101s curl 101s The following packages will be upgraded: 101s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 101s ubuntu-minimal ubuntu-standard 101s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 101s Need to get 4613 kB of archives. 101s After this operation, 211 kB of additional disk space will be used. 101s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 101s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 101s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 101s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 101s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 101s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 101s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 101s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 101s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 102s Fetched 4613 kB in 1s (6761 kB/s) 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 102s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 102s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 102s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 102s udisks2 depends on libglib2.0-0 (>= 2.77.0). 102s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 102s python3-gi depends on libglib2.0-0 (>= 2.77.0). 102s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 102s netplan.io depends on libglib2.0-0 (>= 2.70.0). 102s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 102s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 102s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 102s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 102s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 102s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 102s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 102s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 102s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 102s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 102s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 102s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 102s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 102s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 102s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 102s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 102s fwupd depends on libglib2.0-0 (>= 2.79.0). 102s bolt depends on libglib2.0-0 (>= 2.56.0). 102s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 102s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 102s Selecting previously unselected package libglib2.0-0t64:arm64. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 102s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 102s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 102s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 102s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 102s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 102s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 102s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 102s wget depends on libssl3 (>= 3.0.0). 102s u-boot-tools depends on libssl3 (>= 3.0.0). 102s tnftp depends on libssl3 (>= 3.0.0). 102s tcpdump depends on libssl3 (>= 3.0.0). 102s systemd-resolved depends on libssl3 (>= 3.0.0). 102s systemd depends on libssl3 (>= 3.0.0). 102s sudo depends on libssl3 (>= 3.0.0). 102s sbsigntool depends on libssl3 (>= 3.0.0). 102s rsync depends on libssl3 (>= 3.0.0). 102s python3-cryptography depends on libssl3 (>= 3.0.0). 102s openssh-server depends on libssl3 (>= 3.0.10). 102s openssh-client depends on libssl3 (>= 3.0.10). 102s mtd-utils depends on libssl3 (>= 3.0.0). 102s mokutil depends on libssl3 (>= 3.0.0). 102s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 102s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 102s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 102s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 102s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 102s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 102s libnvme1 depends on libssl3 (>= 3.0.0). 102s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 102s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 102s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 102s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 102s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 102s kmod depends on libssl3 (>= 3.0.0). 102s dhcpcd-base depends on libssl3 (>= 3.0.0). 102s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 102s 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 103s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 103s Selecting previously unselected package libssl3t64:arm64. 103s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 103s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 103s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 103s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 103s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 103s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 103s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 103s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 103s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 103s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 103s Unpacking ubuntu-minimal (1.536) over (1.535) ... 103s Selecting previously unselected package xdg-user-dirs. 103s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 103s Unpacking xdg-user-dirs (0.18-1) ... 103s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 103s Unpacking ubuntu-standard (1.536) over (1.535) ... 103s Setting up ubuntu-minimal (1.536) ... 103s Setting up xdg-user-dirs (0.18-1) ... 103s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 103s Setting up libtirpc-common (1.3.4+ds-1.1) ... 103s Setting up ubuntu-standard (1.536) ... 103s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 103s No schema files found: doing nothing. 103s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 103s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 103s Setting up openssl (3.0.13-0ubuntu1) ... 103s Setting up readline-common (8.2-3.1) ... 103s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for install-info (7.1-3) ... 104s Processing triggers for libc-bin (2.39-0ubuntu2) ... 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 106s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 106s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 106s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 106s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 107s Reading package lists... 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Calculating upgrade... 108s The following packages have been kept back: 108s curl 108s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 112s autopkgtest [17:47:51]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 112s autopkgtest [17:47:51]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-summarizedexperiment 114s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (dsc) [2521 B] 114s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (tar) [75.3 kB] 114s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-summarizedexperiment 1.32.0+dfsg-1 (diff) [5236 B] 114s gpgv: Signature made Thu Nov 30 01:57:44 2023 UTC 114s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 114s gpgv: issuer "plessy@debian.org" 114s gpgv: Can't check signature: No public key 114s dpkg-source: warning: cannot verify inline signature for ./r-bioc-summarizedexperiment_1.32.0+dfsg-1.dsc: no acceptable signature found 114s autopkgtest [17:47:53]: testing package r-bioc-summarizedexperiment version 1.32.0+dfsg-1 115s autopkgtest [17:47:54]: build not needed 116s autopkgtest [17:47:55]: test pkg-r-autopkgtest: preparing testbed 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s Starting pkgProblemResolver with broken count: 0 118s Starting 2 pkgProblemResolver with broken count: 0 118s Done 118s The following additional packages will be installed: 118s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 118s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 118s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 118s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 118s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 118s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 118s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 118s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 118s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 118s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 118s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 118s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 118s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 118s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 118s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 118s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 118s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 118s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 118s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 118s libjs-popper.js libjs-prettify libjs-sifter.js 118s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 118s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 118s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 118s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 118s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 118s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 118s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 118s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 118s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 118s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 118s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 118s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 118s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 118s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 118s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 118s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 118s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 118s r-bioc-genomicranges r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest 118s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 118s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 118s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 118s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 118s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 118s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 118s r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 118s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 118s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 118s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 118s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 118s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 118s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 118s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 118s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 118s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 118s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 118s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 118s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 118s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 118s r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 118s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 118s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 118s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 118s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 118s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 118s x11-common xdg-utils zip zlib1g-dev 118s Suggested packages: 118s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 118s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 118s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 118s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 118s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 118s libboost-context1.83-dev libboost-contract1.83-dev 118s libboost-coroutine1.83-dev libboost-date-time1.83-dev 118s libboost-exception1.83-dev libboost-fiber1.83-dev 118s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 118s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 118s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 118s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 118s libboost-numpy1.83-dev libboost-program-options1.83-dev 118s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 118s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 118s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 118s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 118s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 118s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 118s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 118s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 118s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 118s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 118s librsvg2-bin groff ghc php python ruby libjs-katex 118s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 118s r-base-html texlive-plain-generic texlive-fonts-recommended 118s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-genefilter 118s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-bioc-affy 118s r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 118s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 118s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 118s r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 118s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 118s r-bioc-annotationhub r-bioc-dexseq r-bioc-experimenthub 118s r-bioc-singlecellexperiment r-bioc-sparsematrixstats r-cran-bench 118s r-cran-ggplot2 r-cran-tinytest r-bioc-limma r-cran-roxygen2 r-cran-ff 118s r-cran-covr r-cran-spelling r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 118s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 118s r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline 118s r-cran-rmpi r-cran-rlecuyer r-cran-here r-cran-plm r-cran-zoo debhelper 118s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 118s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 118s Recommended packages: 118s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 118s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 118s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 118s r-cran-testit r-cran-tufte r-cran-webshot r-cran-covr r-cran-ggplot2 118s r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench 118s r-cran-decor r-cran-lobstr r-cran-scales r-cran-spelling r-cran-webutils 118s r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql r-cran-unitizer 118s r-cran-rsvg r-cran-survival r-cran-cairo r-cran-markdown r-cran-ragg 118s r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 118s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 118s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 118s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 118s r-cran-future r-cran-pingr r-cran-usethis r-cran-dygraphs r-cran-dbitest 118s r-cran-gert r-cran-rvest r-cran-data.table r-cran-formattable r-cran-pkgdown 118s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 118s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 118s The following packages will be REMOVED: 118s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 118s The following NEW packages will be installed: 118s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 118s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 118s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 118s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 118s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 118s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 118s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 118s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 118s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 118s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 118s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 118s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 118s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 118s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 118s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 118s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 118s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 118s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 118s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 118s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 118s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 118s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 118s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 118s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 118s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 118s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 118s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 118s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 118s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 118s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 118s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 118s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 118s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 118s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 118s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 118s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 118s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 118s r-bioc-genomicranges r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest 118s r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 118s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 118s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 118s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 118s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 118s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 118s r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 118s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 118s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 118s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 118s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 118s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 118s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 118s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 118s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 118s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 118s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 118s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 118s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 118s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 118s r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 118s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 118s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 118s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 118s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 118s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 118s x11-common xdg-utils zip zlib1g-dev 118s The following packages will be upgraded: 118s curl 119s 1 upgraded, 313 newly installed, 5 to remove and 0 not upgraded. 119s Need to get 440 MB/440 MB of archives. 119s After this operation, 1392 MB of additional disk space will be used. 119s Get:1 /tmp/autopkgtest.bvkNbo/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [832 B] 119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 119s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 119s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 119s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 119s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 119s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 119s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 119s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 119s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 119s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 119s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 119s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 119s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 119s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 119s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 119s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 120s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 120s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 120s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 120s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 120s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 120s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 120s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 120s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 120s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 120s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 120s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 120s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 120s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 120s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 121s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 121s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 121s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 121s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 122s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 122s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 122s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 122s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 122s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 122s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 122s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 122s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 122s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 122s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 122s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 122s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 122s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 122s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 122s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 122s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 122s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 122s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 123s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 123s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 123s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 123s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 123s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 123s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 123s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 123s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 123s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 123s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 123s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 123s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 123s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 123s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 123s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 123s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 123s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 123s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 123s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 123s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 123s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 123s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 123s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 123s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 123s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 124s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 124s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 124s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 124s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 124s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 124s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 124s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 124s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 124s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 124s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 124s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 124s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 124s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 124s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 124s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 124s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 124s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 124s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 124s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 124s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 124s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 124s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 124s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 124s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 125s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 125s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 125s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 125s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 125s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 125s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 125s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 125s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 125s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 125s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 125s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 125s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 125s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 125s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 125s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 125s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 125s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 125s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 125s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 125s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 125s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 125s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 125s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 125s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 125s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 125s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 125s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 125s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 125s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 125s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 125s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 125s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 125s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 125s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 126s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 126s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 126s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 126s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 126s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 126s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 126s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 126s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 126s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 126s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 126s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 126s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 126s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 126s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 126s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 126s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 126s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 126s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 126s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 126s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 126s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 126s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 126s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 127s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 127s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 127s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 127s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 127s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 127s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 127s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 127s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 127s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 127s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 127s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 127s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 127s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 127s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 127s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 127s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 127s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 128s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 128s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 128s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 128s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 128s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 128s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 128s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 128s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 128s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 128s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 128s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 128s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 128s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 128s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 128s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 128s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 128s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 128s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 128s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 128s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 128s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 128s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 128s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 128s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 128s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 128s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 128s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 128s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 129s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 129s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 129s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 129s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 129s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 130s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 130s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 130s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 130s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 130s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 130s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 130s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 130s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 130s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 130s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 130s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 130s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 130s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 130s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 130s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 130s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 130s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 130s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 130s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 130s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 130s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 130s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 130s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 130s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 130s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 130s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 130s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 130s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 130s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 130s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 130s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 130s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 130s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 130s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 130s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 130s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 130s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 130s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 130s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 130s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 130s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 130s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 130s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 131s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 131s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 131s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 131s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 131s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 131s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 131s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 131s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 131s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 131s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 131s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 131s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 131s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 131s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 131s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 131s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 131s Get:269 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 131s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 131s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 132s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 132s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 135s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 135s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 135s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 135s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 135s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 135s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 135s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 135s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 135s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 135s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 135s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 135s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 135s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 135s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 135s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 135s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 135s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 135s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 135s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 135s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 135s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 135s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 135s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 135s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 135s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 135s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 135s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 136s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 136s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 136s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 136s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 136s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 136s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 136s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 136s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 136s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 136s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 136s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 136s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 136s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 136s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 138s Preconfiguring packages ... 138s Fetched 440 MB in 18s (24.5 MB/s) 138s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 138s wget depends on libpsl5 (>= 0.16.0). 138s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 138s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 138s Removing libpsl5:arm64 (0.21.2-1build1) ... 138s Selecting previously unselected package libpsl5t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 139s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 139s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 139s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 139s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 139s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 139s Selecting previously unselected package libcurl4t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 139s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 139s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 139s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 139s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 139s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 139s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 139s Removing libpng16-16:arm64 (1.6.43-1) ... 139s Selecting previously unselected package libpng16-16t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 139s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 139s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 139s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 139s parted depends on libreadline8 (>= 6.0). 139s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 139s gpgsm depends on libreadline8 (>= 6.0). 139s gpgconf depends on libreadline8 (>= 6.0). 139s gpg depends on libreadline8 (>= 6.0). 139s gawk depends on libreadline8 (>= 6.0). 139s fdisk depends on libreadline8 (>= 6.0). 139s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 139s Removing libreadline8:arm64 (8.2-3) ... 139s Selecting previously unselected package libreadline8t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 139s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 139s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 139s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 139s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 139s lsof depends on libtirpc3 (>= 1.0.2). 139s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 139s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 139s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 139s iproute2 depends on libtirpc3 (>= 1.0.2). 139s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 139s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 139s Selecting previously unselected package libtirpc3t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 139s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 139s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libc-dev-bin. 139s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 139s Selecting previously unselected package linux-libc-dev:arm64. 139s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 139s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 139s Selecting previously unselected package libcrypt-dev:arm64. 139s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 139s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 139s Selecting previously unselected package libtirpc-dev:arm64. 139s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 139s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libnsl-dev:arm64. 140s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 140s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 140s Selecting previously unselected package rpcsvc-proto. 140s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 140s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 140s Selecting previously unselected package libc6-dev:arm64. 140s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 140s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 140s Selecting previously unselected package libisl23:arm64. 140s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 140s Unpacking libisl23:arm64 (0.26-3) ... 140s Selecting previously unselected package libmpc3:arm64. 140s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 140s Unpacking libmpc3:arm64 (1.3.1-1) ... 140s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 140s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-13. 140s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking cpp-13 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Selecting previously unselected package libatomic1:arm64. 140s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libasan8:arm64. 140s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package liblsan0:arm64. 140s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libtsan2:arm64. 140s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libubsan1:arm64. 140s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libhwasan0:arm64. 140s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 140s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 140s Selecting previously unselected package libgcc-13-dev:arm64. 140s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 141s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-13. 141s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gcc-aarch64-linux-gnu. 141s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package gcc. 141s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gcc (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package libstdc++-13-dev:arm64. 141s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-13-aarch64-linux-gnu. 141s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-13. 141s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-aarch64-linux-gnu. 142s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package g++. 142s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking g++ (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package build-essential. 142s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 142s Unpacking build-essential (12.10ubuntu1) ... 142s Selecting previously unselected package dctrl-tools. 142s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 142s Unpacking dctrl-tools (2.24-3build2) ... 142s Selecting previously unselected package fonts-dejavu-mono. 142s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-mono (2.37-8) ... 142s Selecting previously unselected package fonts-dejavu-core. 142s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 142s Unpacking fonts-dejavu-core (2.37-8) ... 142s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack 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fonts-lmodern. 142s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 142s Unpacking fonts-lmodern (2.005-1) ... 142s Selecting previously unselected package fonts-mathjax. 143s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 143s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 143s Selecting previously unselected package libgfortran5:arm64. 143s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 143s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 143s Selecting previously unselected package libgfortran-13-dev:arm64. 143s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 143s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-13. 143s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-aarch64-linux-gnu. 143s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package gfortran. 143s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package hdf5-helpers. 143s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 143s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 143s Selecting previously unselected package icu-devtools. 143s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 143s Unpacking icu-devtools (74.2-1ubuntu1) ... 143s Selecting previously unselected package javascript-common. 143s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 143s Unpacking javascript-common (11+nmu1) ... 143s Selecting previously unselected package libaec0:arm64. 143s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 143s Unpacking libaec0:arm64 (1.1.2-1) ... 143s Selecting previously unselected package libio-string-perl. 143s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 143s Unpacking libio-string-perl (1.08-4) ... 143s Selecting previously unselected package liblatex-tounicode-perl. 143s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 143s Unpacking liblatex-tounicode-perl (0.54-2) ... 143s Selecting previously unselected package libbibtex-parser-perl. 143s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 143s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 143s Selecting previously unselected package libblas3:arm64. 144s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 144s Unpacking libblas3:arm64 (3.12.0-3) ... 144s Selecting previously unselected package libblas-dev:arm64. 144s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 144s Unpacking libblas-dev:arm64 (3.12.0-3) ... 144s Selecting previously unselected package libsnappy1v5:arm64. 144s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 144s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 144s Selecting previously unselected package libblosc1:arm64. 144s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 144s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 144s Selecting previously unselected package libboost1.83-dev:arm64. 144s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 144s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 145s Selecting previously unselected package libboost-dev:arm64. 145s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 145s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 145s Selecting previously unselected package libbz2-dev:arm64. 145s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 145s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 145s Selecting previously unselected package libpixman-1-0:arm64. 146s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 146s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 146s Selecting previously unselected package libxcb-render0:arm64. 146s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 146s Unpacking libxcb-render0:arm64 (1.15-1) ... 146s Selecting previously unselected package libxcb-shm0:arm64. 146s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 146s Unpacking libxcb-shm0:arm64 (1.15-1) ... 146s Selecting previously unselected package libxrender1:arm64. 146s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 146s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 146s Selecting previously unselected package libcairo2:arm64. 146s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 146s Unpacking libcairo2:arm64 (1.18.0-1) ... 146s Selecting previously unselected package libcurl4-openssl-dev:arm64. 146s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 146s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 146s Selecting previously unselected package libdatrie1:arm64. 146s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 146s Unpacking libdatrie1:arm64 (0.2.13-3) ... 146s Selecting previously unselected package libdeflate0:arm64. 146s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 146s Unpacking libdeflate0:arm64 (1.19-1) ... 146s Selecting previously unselected package libgraphite2-3:arm64. 146s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 146s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 146s Selecting previously unselected package libharfbuzz0b:arm64. 146s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 146s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 146s Selecting previously unselected package libsz2:arm64. 146s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 146s Unpacking libsz2:arm64 (1.1.2-1) ... 146s Selecting previously unselected package libhdf5-103-1:arm64. 146s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 146s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package libhdf5-fortran-102:arm64. 146s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package libhdf5-hl-100:arm64. 146s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 146s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 146s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 146s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 146s Selecting previously unselected package zlib1g-dev:arm64. 146s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 146s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8:arm64. 146s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 146s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 146s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 146s Selecting previously unselected package libjpeg8:arm64. 146s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjpeg8-dev:arm64. 146s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 147s Selecting previously unselected package libjpeg-dev:arm64. 147s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 147s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 147s Selecting previously unselected package libaec-dev:arm64. 147s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 147s Unpacking libaec-dev:arm64 (1.1.2-1) ... 147s Selecting previously unselected package libssl-dev:arm64. 147s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 147s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 147s Selecting previously unselected package libhdf5-dev. 147s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 147s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 147s Selecting previously unselected package x11-common. 147s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 147s Unpacking x11-common (1:7.7+23ubuntu2) ... 147s Selecting previously unselected package libice6:arm64. 147s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 147s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 147s Selecting previously unselected package libicu-dev:arm64. 147s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 147s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 147s Selecting previously unselected package libjs-bootstrap. 147s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 147s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 147s Selecting previously unselected package libjs-popper.js. 147s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 147s Unpacking libjs-popper.js (1.16.1+ds-6) ... 147s Selecting previously unselected package libjs-bootstrap4. 147s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 148s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 148s Selecting previously unselected package libjs-d3. 148s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 148s Unpacking libjs-d3 (3.5.17-4) ... 148s Selecting previously unselected package libjs-es5-shim. 148s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 148s Unpacking libjs-es5-shim (4.6.7-2) ... 148s Selecting previously unselected package libjs-highlight.js. 148s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 148s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 148s Selecting previously unselected package libjs-jquery. 148s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 148s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 148s Selecting previously unselected package libjs-jquery-datatables. 148s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 148s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 148s Selecting previously unselected package libjs-sifter.js. 148s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 148s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 148s Selecting previously unselected package libjs-microplugin.js. 148s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 148s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 148s Selecting previously unselected package libjs-jquery-selectize.js. 148s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 148s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 148s Selecting previously unselected package libjs-jquery-ui. 148s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 148s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 148s Selecting previously unselected package libjs-json. 148s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 148s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 148s Selecting previously unselected package libjs-lunr. 148s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 148s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 148s Selecting previously unselected package libjs-prettify. 148s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 148s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 148s Selecting previously unselected package libkpathsea6:arm64. 148s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 148s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 148s Selecting previously unselected package liblapack3:arm64. 148s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 148s Unpacking liblapack3:arm64 (3.12.0-3) ... 149s Selecting previously unselected package liblapack-dev:arm64. 149s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 149s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 149s Selecting previously unselected package liblerc4:arm64. 149s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 149s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 149s Selecting previously unselected package liblua5.4-0:arm64. 149s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 149s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 149s Selecting previously unselected package libncurses-dev:arm64. 150s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 150s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 150s Selecting previously unselected package libthai-data. 150s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 150s Unpacking libthai-data (0.1.29-2) ... 150s Selecting previously unselected package libthai0:arm64. 150s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 150s Unpacking libthai0:arm64 (0.1.29-2) ... 150s Selecting previously unselected package libpango-1.0-0:arm64. 150s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 150s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpangoft2-1.0-0:arm64. 150s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 150s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpangocairo-1.0-0:arm64. 150s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 150s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 150s Selecting previously unselected package libpaper1:arm64. 150s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 150s Unpacking libpaper1:arm64 (1.1.29) ... 150s Selecting previously unselected package libpaper-utils. 150s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 150s Unpacking libpaper-utils (1.1.29) ... 150s Selecting previously unselected package libpcre2-16-0:arm64. 150s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 150s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 151s Selecting previously unselected package libpcre2-32-0:arm64. 151s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 151s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 151s Selecting previously unselected package libpcre2-posix3:arm64. 151s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 151s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 151s Selecting previously unselected package libpcre2-dev:arm64. 151s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 151s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 151s Selecting previously unselected package libpkgconf3:arm64. 151s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 151s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 151s Selecting previously unselected package libpng-dev:arm64. 151s Preparing to unpack .../126-libpng-dev_1.6.43-3_arm64.deb ... 151s Unpacking libpng-dev:arm64 (1.6.43-3) ... 151s Selecting previously unselected package libpotrace0:arm64. 151s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 151s Unpacking libpotrace0:arm64 (1.16-2) ... 151s Selecting previously unselected package libptexenc1:arm64. 151s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 151s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 151s Selecting previously unselected package libreadline-dev:arm64. 151s Preparing to unpack .../129-libreadline-dev_8.2-3.1_arm64.deb ... 151s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 151s Selecting previously unselected package libsharpyuv0:arm64. 151s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 151s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 151s Selecting previously unselected package libsm6:arm64. 151s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 151s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 151s Selecting previously unselected package libsynctex2:arm64. 151s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 151s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 151s Selecting previously unselected package libtcl8.6:arm64. 151s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 151s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 151s Selecting previously unselected package libteckit0:arm64. 151s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 151s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 151s Selecting previously unselected package libtexlua53-5:arm64. 151s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 151s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 151s Selecting previously unselected package libjbig0:arm64. 151s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 151s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 152s Selecting previously unselected package libwebp7:arm64. 152s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 152s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 152s Selecting previously unselected package libtiff6:arm64. 152s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 152s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 152s Selecting previously unselected package libxft2:arm64. 152s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 152s Unpacking libxft2:arm64 (2.3.6-1) ... 152s Selecting previously unselected package libxss1:arm64. 152s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 152s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 152s Selecting previously unselected package libtk8.6:arm64. 152s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 152s Unpacking libtk8.6:arm64 (8.6.13-2) ... 152s Selecting previously unselected package libxt6t64:arm64. 152s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 152s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 152s Selecting previously unselected package libxmu6:arm64. 152s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 152s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 152s Selecting previously unselected package libxpm4:arm64. 152s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 152s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 152s Selecting previously unselected package libxaw7:arm64. 152s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 152s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 152s Selecting previously unselected package libxi6:arm64. 152s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 152s Unpacking libxi6:arm64 (2:1.8.1-1) ... 152s Selecting previously unselected package libzzip-0-13:arm64. 152s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 152s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 152s Selecting previously unselected package node-bootstrap-sass. 152s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 152s Unpacking node-bootstrap-sass (3.4.3-2) ... 152s Selecting previously unselected package node-html5shiv. 152s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 152s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 152s Selecting previously unselected package node-normalize.css. 152s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 152s Unpacking node-normalize.css (8.0.1-5) ... 152s Selecting previously unselected package pandoc-data. 152s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 152s Unpacking pandoc-data (3.1.3-1) ... 152s Selecting previously unselected package pandoc. 153s Preparing to unpack .../152-pandoc_3.1.3+ds-2_arm64.deb ... 153s Unpacking pandoc (3.1.3+ds-2) ... 153s Selecting previously unselected package pkgconf-bin. 153s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_arm64.deb ... 153s Unpacking pkgconf-bin (1.8.1-2) ... 153s Selecting previously unselected package pkgconf:arm64. 154s Preparing to unpack .../154-pkgconf_1.8.1-2_arm64.deb ... 154s Unpacking pkgconf:arm64 (1.8.1-2) ... 154s Selecting previously unselected package pkg-config:arm64. 154s Preparing to unpack .../155-pkg-config_1.8.1-2_arm64.deb ... 154s Unpacking pkg-config:arm64 (1.8.1-2) ... 154s Selecting previously unselected package zip. 154s Preparing to unpack .../156-zip_3.0-13_arm64.deb ... 154s Unpacking zip (3.0-13) ... 154s Selecting previously unselected package unzip. 154s Preparing to unpack .../157-unzip_6.0-28ubuntu3_arm64.deb ... 154s Unpacking unzip (6.0-28ubuntu3) ... 154s Selecting previously unselected package xdg-utils. 154s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 154s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 154s Selecting previously unselected package r-base-core. 154s Preparing to unpack .../159-r-base-core_4.3.3-2build1_arm64.deb ... 154s Unpacking r-base-core (4.3.3-2build1) ... 154s Selecting previously unselected package liblzma-dev:arm64. 154s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_arm64.deb ... 154s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 154s Selecting previously unselected package r-base-dev. 154s Preparing to unpack .../161-r-base-dev_4.3.3-2build1_all.deb ... 154s Unpacking r-base-dev (4.3.3-2build1) ... 154s Selecting previously unselected package pkg-r-autopkgtest. 154s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 154s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 154s Selecting previously unselected package r-bioc-biocgenerics. 154s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 154s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 154s Selecting previously unselected package r-bioc-biobase. 154s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_arm64.deb ... 154s Unpacking r-bioc-biobase (2.62.0-1) ... 154s Selecting previously unselected package r-bioc-s4vectors. 154s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 154s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 154s Selecting previously unselected package r-bioc-iranges. 154s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_arm64.deb ... 154s Unpacking r-bioc-iranges (2.36.0-1) ... 155s Selecting previously unselected package r-cran-dbi. 155s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 155s Unpacking r-cran-dbi (1.2.2-1) ... 155s Selecting previously unselected package r-cran-bit. 155s Preparing to unpack .../168-r-cran-bit_4.0.5-1_arm64.deb ... 155s Unpacking r-cran-bit (4.0.5-1) ... 155s Selecting previously unselected package r-cran-bit64. 155s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_arm64.deb ... 155s Unpacking r-cran-bit64 (4.0.5-1) ... 155s Selecting previously unselected package r-cran-rlang. 155s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_arm64.deb ... 155s Unpacking r-cran-rlang (1.1.3-1) ... 155s Selecting previously unselected package r-cran-cli. 155s Preparing to unpack .../171-r-cran-cli_3.6.2-1_arm64.deb ... 155s Unpacking r-cran-cli (3.6.2-1) ... 155s Selecting previously unselected package r-cran-glue. 155s Preparing to unpack .../172-r-cran-glue_1.7.0-1_arm64.deb ... 155s Unpacking r-cran-glue (1.7.0-1) ... 155s Selecting previously unselected package r-cran-lifecycle. 155s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 155s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 155s Selecting previously unselected package r-cran-vctrs. 155s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_arm64.deb ... 155s Unpacking r-cran-vctrs (0.6.5-1) ... 155s Selecting previously unselected package r-cran-blob. 155s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 155s Unpacking r-cran-blob (1.2.4-1) ... 155s Selecting previously unselected package r-cran-fastmap. 155s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_arm64.deb ... 155s Unpacking r-cran-fastmap (1.1.1-1) ... 155s Selecting previously unselected package r-cran-cachem. 155s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_arm64.deb ... 155s Unpacking r-cran-cachem (1.0.8-1) ... 155s Selecting previously unselected package r-cran-memoise. 155s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 155s Unpacking r-cran-memoise (2.0.1-1) ... 155s Selecting previously unselected package r-cran-pkgconfig. 155s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 155s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 155s Selecting previously unselected package r-cran-plogr. 155s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 155s Unpacking r-cran-plogr (0.2.0-3build1) ... 155s Selecting previously unselected package r-cran-cpp11. 155s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 155s Unpacking r-cran-cpp11 (0.4.7-1) ... 155s Selecting previously unselected package r-cran-rsqlite. 155s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_arm64.deb ... 155s Unpacking r-cran-rsqlite (2.3.4-1) ... 155s Selecting previously unselected package r-cran-curl. 155s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 155s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-jsonlite. 155s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 155s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 155s Selecting previously unselected package r-cran-mime. 155s Preparing to unpack .../185-r-cran-mime_0.12-1_arm64.deb ... 155s Unpacking r-cran-mime (0.12-1) ... 155s Selecting previously unselected package r-cran-sys. 156s Preparing to unpack .../186-r-cran-sys_3.4.2-1_arm64.deb ... 156s Unpacking r-cran-sys (3.4.2-1) ... 156s Selecting previously unselected package r-cran-askpass. 156s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_arm64.deb ... 156s Unpacking r-cran-askpass (1.2.0-1) ... 156s Selecting previously unselected package r-cran-openssl. 156s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 156s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 156s Selecting previously unselected package r-cran-r6. 156s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 156s Unpacking r-cran-r6 (2.5.1-1) ... 156s Selecting previously unselected package r-cran-httr. 156s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 156s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 156s Selecting previously unselected package r-cran-png. 156s Preparing to unpack .../191-r-cran-png_0.1-8-1_arm64.deb ... 156s Unpacking r-cran-png (0.1-8-1) ... 156s Selecting previously unselected package r-bioc-zlibbioc. 156s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 156s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 156s Selecting previously unselected package r-bioc-xvector. 156s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_arm64.deb ... 156s Unpacking r-bioc-xvector (0.42.0-1) ... 156s Selecting previously unselected package r-cran-bitops. 156s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_arm64.deb ... 156s Unpacking r-cran-bitops (1.0-7-1) ... 156s Selecting previously unselected package r-cran-rcurl. 156s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 156s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 156s Selecting previously unselected package r-bioc-genomeinfodbdata. 156s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 156s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 156s Selecting previously unselected package r-bioc-genomeinfodb. 156s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 156s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 156s Selecting previously unselected package r-cran-crayon. 156s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 156s Unpacking r-cran-crayon (1.5.2-1) ... 156s Selecting previously unselected package r-bioc-biostrings. 156s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 156s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 156s Selecting previously unselected package r-bioc-keggrest. 156s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 156s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 156s Selecting previously unselected package r-bioc-annotationdbi. 156s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 156s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 156s Selecting previously unselected package r-cran-xml. 157s Preparing to unpack .../202-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 157s Unpacking r-cran-xml (3.99-0.16.1-1) ... 157s Selecting previously unselected package r-cran-xtable. 157s Preparing to unpack .../203-r-cran-xtable_1%3a1.8-4-2_all.deb ... 157s Unpacking r-cran-xtable (1:1.8-4-2) ... 157s Selecting previously unselected package r-bioc-annotate. 157s Preparing to unpack .../204-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 157s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-generics. 157s Preparing to unpack .../205-r-cran-generics_0.1.3-1_all.deb ... 157s Unpacking r-cran-generics (0.1.3-1) ... 157s Selecting previously unselected package r-cran-magrittr. 157s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_arm64.deb ... 157s Unpacking r-cran-magrittr (2.0.3-1) ... 157s Selecting previously unselected package r-cran-fansi. 157s Preparing to unpack .../207-r-cran-fansi_1.0.5-1_arm64.deb ... 157s Unpacking r-cran-fansi (1.0.5-1) ... 157s Selecting previously unselected package r-cran-utf8. 157s Preparing to unpack .../208-r-cran-utf8_1.2.4-1_arm64.deb ... 157s Unpacking r-cran-utf8 (1.2.4-1) ... 157s Selecting previously unselected package r-cran-pillar. 157s Preparing to unpack .../209-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 157s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-tibble. 157s Preparing to unpack .../210-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 157s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 157s Selecting previously unselected package r-cran-withr. 157s Preparing to unpack .../211-r-cran-withr_2.5.0-1_all.deb ... 157s Unpacking r-cran-withr (2.5.0-1) ... 157s Selecting previously unselected package r-cran-tidyselect. 157s Preparing to unpack .../212-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 157s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-dplyr. 157s Preparing to unpack .../213-r-cran-dplyr_1.1.4-1_arm64.deb ... 157s Unpacking r-cran-dplyr (1.1.4-1) ... 157s Selecting previously unselected package r-cran-purrr. 157s Preparing to unpack .../214-r-cran-purrr_1.0.2-1_arm64.deb ... 157s Unpacking r-cran-purrr (1.0.2-1) ... 157s Selecting previously unselected package r-cran-stringi. 157s Preparing to unpack .../215-r-cran-stringi_1.8.3-1_arm64.deb ... 157s Unpacking r-cran-stringi (1.8.3-1) ... 157s Selecting previously unselected package r-cran-stringr. 157s Preparing to unpack .../216-r-cran-stringr_1.5.1-1_all.deb ... 157s Unpacking r-cran-stringr (1.5.1-1) ... 157s Selecting previously unselected package r-cran-tidyr. 157s Preparing to unpack .../217-r-cran-tidyr_1.3.1-1_arm64.deb ... 157s Unpacking r-cran-tidyr (1.3.1-1) ... 157s Selecting previously unselected package r-cran-dbplyr. 157s Preparing to unpack .../218-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 157s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 157s Selecting previously unselected package r-cran-filelock. 157s Preparing to unpack .../219-r-cran-filelock_1.0.3-1_arm64.deb ... 157s Unpacking r-cran-filelock (1.0.3-1) ... 157s Selecting previously unselected package r-bioc-biocfilecache. 157s Preparing to unpack .../220-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 157s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 158s Selecting previously unselected package r-bioc-biocio. 158s Preparing to unpack .../221-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 158s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 158s Selecting previously unselected package r-cran-formatr. 158s Preparing to unpack .../222-r-cran-formatr_1.14-1_all.deb ... 158s Unpacking r-cran-formatr (1.14-1) ... 158s Selecting previously unselected package r-cran-lambda.r. 158s Preparing to unpack .../223-r-cran-lambda.r_1.2.4-2build1_all.deb ... 158s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 158s Selecting previously unselected package r-cran-futile.options. 158s Preparing to unpack .../224-r-cran-futile.options_1.0.1-3build1_all.deb ... 158s Unpacking r-cran-futile.options (1.0.1-3build1) ... 158s Selecting previously unselected package r-cran-futile.logger. 158s Preparing to unpack .../225-r-cran-futile.logger_1.4.3-4build1_all.deb ... 158s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 158s Selecting previously unselected package r-cran-snow. 158s Preparing to unpack .../226-r-cran-snow_1%3a0.4.4-2_all.deb ... 158s Unpacking r-cran-snow (1:0.4.4-2) ... 158s Selecting previously unselected package r-cran-codetools. 158s Preparing to unpack .../227-r-cran-codetools_0.2-19-1_all.deb ... 158s Unpacking r-cran-codetools (0.2-19-1) ... 158s Selecting previously unselected package r-cran-bh. 158s Preparing to unpack .../228-r-cran-bh_1.84.0-1_all.deb ... 158s Unpacking r-cran-bh (1.84.0-1) ... 158s Selecting previously unselected package r-bioc-biocparallel. 158s Preparing to unpack .../229-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 158s Unpacking r-bioc-biocparallel (1.36.0-1) ... 158s Selecting previously unselected package r-cran-base64enc. 158s Preparing to unpack .../230-r-cran-base64enc_0.1-3-3_arm64.deb ... 158s Unpacking r-cran-base64enc (0.1-3-3) ... 158s Selecting previously unselected package r-cran-digest. 158s Preparing to unpack .../231-r-cran-digest_0.6.34-1_arm64.deb ... 158s Unpacking r-cran-digest (0.6.34-1) ... 158s Selecting previously unselected package r-cran-ellipsis. 158s Preparing to unpack .../232-r-cran-ellipsis_0.3.2-2_arm64.deb ... 158s Unpacking r-cran-ellipsis (0.3.2-2) ... 158s Selecting previously unselected package r-cran-htmltools. 159s Preparing to unpack .../233-r-cran-htmltools_0.5.7-1_arm64.deb ... 159s Unpacking r-cran-htmltools (0.5.7-1) ... 159s Selecting previously unselected package r-cran-evaluate. 159s Preparing to unpack .../234-r-cran-evaluate_0.23-1_all.deb ... 159s Unpacking r-cran-evaluate (0.23-1) ... 159s Selecting previously unselected package r-cran-xfun. 159s Preparing to unpack .../235-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 159s Unpacking r-cran-xfun (0.41+dfsg-1) ... 159s Selecting previously unselected package r-cran-highr. 159s Preparing to unpack .../236-r-cran-highr_0.10+dfsg-1_all.deb ... 159s Unpacking r-cran-highr (0.10+dfsg-1) ... 159s Selecting previously unselected package r-cran-yaml. 159s Preparing to unpack .../237-r-cran-yaml_2.3.8-1_arm64.deb ... 159s Unpacking r-cran-yaml (2.3.8-1) ... 159s Selecting previously unselected package libjs-mathjax. 159s Preparing to unpack .../238-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 159s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 160s Selecting previously unselected package r-cran-knitr. 160s Preparing to unpack .../239-r-cran-knitr_1.45+dfsg-1_all.deb ... 160s Unpacking r-cran-knitr (1.45+dfsg-1) ... 160s Selecting previously unselected package r-cran-jquerylib. 160s Preparing to unpack .../240-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 160s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 160s Selecting previously unselected package r-cran-fs. 160s Preparing to unpack .../241-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 160s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 160s Selecting previously unselected package r-cran-rappdirs. 160s Preparing to unpack .../242-r-cran-rappdirs_0.3.3-1_arm64.deb ... 160s Unpacking r-cran-rappdirs (0.3.3-1) ... 160s Selecting previously unselected package r-cran-sass. 160s Preparing to unpack .../243-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 160s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 160s Selecting previously unselected package r-cran-bslib. 160s Preparing to unpack .../244-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 160s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 160s Selecting previously unselected package r-cran-fontawesome. 160s Preparing to unpack .../245-r-cran-fontawesome_0.5.2-1_all.deb ... 160s Unpacking r-cran-fontawesome (0.5.2-1) ... 160s Selecting previously unselected package r-cran-tinytex. 160s Preparing to unpack .../246-r-cran-tinytex_0.49-1_all.deb ... 160s Unpacking r-cran-tinytex (0.49-1) ... 160s Selecting previously unselected package libjs-modernizr. 160s Preparing to unpack .../247-libjs-modernizr_2.6.2+ds1-5_all.deb ... 160s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 160s Selecting previously unselected package r-cran-littler. 160s Preparing to unpack .../248-r-cran-littler_0.3.19-1_arm64.deb ... 160s Unpacking r-cran-littler (0.3.19-1) ... 160s Selecting previously unselected package r-cran-pkgkitten. 160s Preparing to unpack .../249-r-cran-pkgkitten_0.2.3-1_all.deb ... 160s Unpacking r-cran-pkgkitten (0.2.3-1) ... 160s Selecting previously unselected package r-cran-rcpp. 160s Preparing to unpack .../250-r-cran-rcpp_1.0.12-1_arm64.deb ... 160s Unpacking r-cran-rcpp (1.0.12-1) ... 160s Selecting previously unselected package r-cran-later. 160s Preparing to unpack .../251-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 160s Unpacking r-cran-later (1.3.2+dfsg-1) ... 160s Selecting previously unselected package r-cran-promises. 160s Preparing to unpack .../252-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 160s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 160s Selecting previously unselected package r-cran-httpuv. 161s Preparing to unpack .../253-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 161s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 161s Selecting previously unselected package r-cran-sourcetools. 161s Preparing to unpack .../254-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 161s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 161s Selecting previously unselected package r-cran-commonmark. 161s Preparing to unpack .../255-r-cran-commonmark_1.9.1-1_arm64.deb ... 161s Unpacking r-cran-commonmark (1.9.1-1) ... 161s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 161s Preparing to unpack .../256-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 161s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 161s Selecting previously unselected package r-cran-shiny. 161s Preparing to unpack .../257-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 161s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 161s Selecting previously unselected package r-cran-rmarkdown. 161s Preparing to unpack .../258-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 161s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 161s Selecting previously unselected package r-cran-bookdown. 161s Preparing to unpack .../259-r-cran-bookdown_0.37+dfsg-1_all.deb ... 161s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 161s Selecting previously unselected package r-cran-biocmanager. 161s Preparing to unpack .../260-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 161s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 161s Selecting previously unselected package tex-common. 161s Preparing to unpack .../261-tex-common_6.18_all.deb ... 161s Unpacking tex-common (6.18) ... 161s Selecting previously unselected package t1utils. 161s Preparing to unpack .../262-t1utils_1.41-4build2_arm64.deb ... 161s Unpacking t1utils (1.41-4build2) ... 161s Selecting previously unselected package texlive-binaries. 161s Preparing to unpack .../263-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 161s Unpacking texlive-binaries (2023.20230311.66589-9) ... 161s Selecting previously unselected package texlive-base. 161s Preparing to unpack .../264-texlive-base_2023.20240207-1_all.deb ... 161s Unpacking texlive-base (2023.20240207-1) ... 163s Selecting previously unselected package texlive-latex-base. 163s Preparing to unpack .../265-texlive-latex-base_2023.20240207-1_all.deb ... 163s Unpacking texlive-latex-base (2023.20240207-1) ... 163s Selecting previously unselected package texlive-bibtex-extra. 163s Preparing to unpack .../266-texlive-bibtex-extra_2023.20240207-1_all.deb ... 163s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 165s Selecting previously unselected package r-bioc-biocstyle. 165s Preparing to unpack .../267-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-hms. 165s Preparing to unpack .../268-r-cran-hms_1.1.3-1_all.deb ... 165s Unpacking r-cran-hms (1.1.3-1) ... 166s Selecting previously unselected package r-cran-prettyunits. 166s Preparing to unpack .../269-r-cran-prettyunits_1.2.0-1_all.deb ... 166s Unpacking r-cran-prettyunits (1.2.0-1) ... 166s Selecting previously unselected package r-cran-progress. 166s Preparing to unpack .../270-r-cran-progress_1.2.3-1_all.deb ... 166s Unpacking r-cran-progress (1.2.3-1) ... 166s Selecting previously unselected package r-cran-xml2. 166s Preparing to unpack .../271-r-cran-xml2_1.3.6-1_arm64.deb ... 166s Unpacking r-cran-xml2 (1.3.6-1) ... 166s Selecting previously unselected package r-bioc-biomart. 166s Preparing to unpack .../272-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 166s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 166s Selecting previously unselected package r-cran-lattice. 166s Preparing to unpack .../273-r-cran-lattice_0.22-5-1_arm64.deb ... 166s Unpacking r-cran-lattice (0.22-5-1) ... 166s Selecting previously unselected package r-cran-matrix. 166s Preparing to unpack .../274-r-cran-matrix_1.6-5-1_arm64.deb ... 166s Unpacking r-cran-matrix (1.6-5-1) ... 166s Selecting previously unselected package r-cran-matrixstats. 166s Preparing to unpack .../275-r-cran-matrixstats_1.2.0-1_arm64.deb ... 166s Unpacking r-cran-matrixstats (1.2.0-1) ... 166s Selecting previously unselected package r-bioc-matrixgenerics. 166s Preparing to unpack .../276-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 166s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 166s Selecting previously unselected package r-cran-abind. 166s Preparing to unpack .../277-r-cran-abind_1.4-5-2_all.deb ... 166s Unpacking r-cran-abind (1.4-5-2) ... 166s Selecting previously unselected package r-bioc-s4arrays. 166s Preparing to unpack .../278-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 166s Selecting previously unselected package r-bioc-sparsearray. 166s Preparing to unpack .../279-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 166s Selecting previously unselected package r-bioc-delayedarray. 166s Preparing to unpack .../280-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 166s Selecting previously unselected package r-bioc-genomicranges. 166s Preparing to unpack .../281-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 166s Selecting previously unselected package r-bioc-summarizedexperiment. 166s Preparing to unpack .../282-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 166s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 166s Selecting previously unselected package r-bioc-rhtslib. 166s Preparing to unpack .../283-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 166s Selecting previously unselected package r-bioc-rsamtools. 166s Preparing to unpack .../284-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 167s Selecting previously unselected package r-bioc-genomicalignments. 167s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 167s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 167s Selecting previously unselected package r-cran-rjson. 167s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_arm64.deb ... 167s Unpacking r-cran-rjson (0.2.21-1) ... 167s Selecting previously unselected package r-cran-restfulr. 167s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_arm64.deb ... 167s Unpacking r-cran-restfulr (0.0.15-1) ... 167s Selecting previously unselected package r-bioc-rtracklayer. 167s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 167s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 167s Selecting previously unselected package r-bioc-genomicfeatures. 167s Preparing to unpack .../289-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 167s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 167s Selecting previously unselected package r-bioc-rhdf5lib. 167s Preparing to unpack .../290-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 167s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 167s Selecting previously unselected package r-bioc-rhdf5filters. 167s Preparing to unpack .../291-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 167s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 167s Selecting previously unselected package r-bioc-rhdf5. 167s Preparing to unpack .../292-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 167s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 167s Selecting previously unselected package r-bioc-hdf5array. 167s Preparing to unpack .../293-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 167s Unpacking r-bioc-hdf5array (1.30.1-1) ... 167s Selecting previously unselected package r-cran-brio. 167s Preparing to unpack .../294-r-cran-brio_1.1.4-1_arm64.deb ... 167s Unpacking r-cran-brio (1.1.4-1) ... 167s Selecting previously unselected package r-cran-ps. 167s Preparing to unpack .../295-r-cran-ps_1.7.6-1_arm64.deb ... 167s Unpacking r-cran-ps (1.7.6-1) ... 167s Selecting previously unselected package r-cran-processx. 167s Preparing to unpack .../296-r-cran-processx_3.8.3-1_arm64.deb ... 167s Unpacking r-cran-processx (3.8.3-1) ... 167s Selecting previously unselected package r-cran-callr. 167s Preparing to unpack .../297-r-cran-callr_3.7.3-2_all.deb ... 167s Unpacking r-cran-callr (3.7.3-2) ... 168s Selecting previously unselected package r-cran-desc. 168s Preparing to unpack .../298-r-cran-desc_1.4.3-1_all.deb ... 168s Unpacking r-cran-desc (1.4.3-1) ... 168s Selecting previously unselected package r-cran-diffobj. 168s Preparing to unpack .../299-r-cran-diffobj_0.3.5-1_arm64.deb ... 168s Unpacking r-cran-diffobj (0.3.5-1) ... 168s Selecting previously unselected package r-cran-pkgbuild. 168s Preparing to unpack .../300-r-cran-pkgbuild_1.4.3-1_all.deb ... 168s Unpacking r-cran-pkgbuild (1.4.3-1) ... 168s Selecting previously unselected package r-cran-rprojroot. 168s Preparing to unpack .../301-r-cran-rprojroot_2.0.4-1_all.deb ... 168s Unpacking r-cran-rprojroot (2.0.4-1) ... 168s Selecting previously unselected package r-cran-pkgload. 168s Preparing to unpack .../302-r-cran-pkgload_1.3.4-1_all.deb ... 168s Unpacking r-cran-pkgload (1.3.4-1) ... 168s Selecting previously unselected package r-cran-praise. 168s Preparing to unpack .../303-r-cran-praise_1.0.0-4build1_all.deb ... 168s Unpacking r-cran-praise (1.0.0-4build1) ... 168s Selecting previously unselected package r-cran-rematch2. 168s Preparing to unpack .../304-r-cran-rematch2_2.1.2-2build1_all.deb ... 168s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 168s Selecting previously unselected package r-cran-runit. 168s Preparing to unpack .../305-r-cran-runit_0.4.32-3_all.deb ... 168s Unpacking r-cran-runit (0.4.32-3) ... 168s Selecting 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associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 176s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 176s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 176s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 176s Setting up r-cran-bitops (1.0-7-1) ... 176s Setting up r-cran-rprojroot (2.0.4-1) ... 176s Setting up r-cran-bit64 (4.0.5-1) ... 176s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 176s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 176s Setting up r-cran-askpass (1.2.0-1) ... 176s Setting up r-cran-fastmap (1.1.1-1) ... 176s Setting up r-cran-png (0.1-8-1) ... 176s Setting up r-bioc-biobase (2.62.0-1) ... 176s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 176s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 176s Setting up r-cran-utf8 (1.2.4-1) ... 176s Setting up r-cran-stringi 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... 176s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 176s Setting up r-base-dev (4.3.3-2build1) ... 176s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 176s Setting up r-cran-stringr (1.5.1-1) ... 176s Setting up r-bioc-biocparallel (1.36.0-1) ... 176s Setting up r-cran-callr (3.7.3-2) ... 176s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 176s Setting up r-cran-desc (1.4.3-1) ... 176s Setting up r-cran-xml2 (1.3.6-1) ... 176s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 176s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 176s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 176s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 176s Setting up texlive-bibtex-extra (2023.20240207-1) ... 176s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 176s Setting up r-cran-httr (1.4.7+dfsg-1) ... 176s Setting up r-cran-hms (1.1.3-1) ... 176s Setting up r-cran-memoise (2.0.1-1) ... 176s Setting up r-cran-promises (1.2.1+dfsg-1) ... 176s Setting up r-cran-purrr (1.0.2-1) ... 176s Setting up r-cran-blob (1.2.4-1) ... 176s Setting up r-cran-htmltools (0.5.7-1) ... 176s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 176s Setting up r-bioc-xvector (0.42.0-1) ... 176s Setting up r-cran-pkgbuild (1.4.3-1) ... 176s Setting up r-cran-sass (0.4.8+dfsg-1) ... 176s Setting up r-cran-dplyr (1.1.4-1) ... 176s Setting up r-cran-rsqlite (2.3.4-1) ... 176s Setting up r-cran-progress (1.2.3-1) ... 176s Setting up r-cran-pkgload (1.3.4-1) ... 176s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 176s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 176s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 176s Setting up r-cran-rematch2 (2.1.2-2build1) ... 176s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 176s Setting up r-cran-fontawesome (0.5.2-1) ... 176s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 176s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 176s Setting up r-cran-waldo (0.5.2-1build1) ... 176s Setting up r-cran-tidyr (1.3.1-1) ... 176s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 176s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 176s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 176s Setting up r-bioc-hdf5array (1.30.1-1) ... 176s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 176s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 176s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 176s Setting up r-bioc-annotationdbi (1.64.1-1) ... 176s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 176s Setting up r-cran-testthat (3.2.1-1) ... 176s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 176s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 176s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 176s Setting up r-bioc-genomicalignments (1.38.2-1) ... 176s Setting up r-cran-bookdown (0.37+dfsg-1) ... 176s Setting up r-bioc-rtracklayer (1.62.0-1) ... 176s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 176s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 176s Setting up autopkgtest-satdep (0) ... 176s Processing triggers for man-db (2.12.0-3) ... 177s Processing triggers for install-info (7.1-3) ... 177s Processing triggers for libc-bin (2.39-0ubuntu2) ... 177s Processing triggers for tex-common (6.18) ... 178s Running updmap-sys. This may take some time... done. 178s Running mktexlsr /var/lib/texmf ... done. 178s Building format(s) --all. 214s This may take some time... done. 230s (Reading database ... 126148 files and directories currently installed.) 230s Removing autopkgtest-satdep (0) ... 231s autopkgtest [17:49:50]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 231s autopkgtest [17:49:50]: test pkg-r-autopkgtest: [----------------------- 231s Test: Try to load the R library SummarizedExperiment 231s 231s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 231s Copyright (C) 2024 The R Foundation for Statistical Computing 231s Platform: aarch64-unknown-linux-gnu (64-bit) 231s 231s R is free software and comes with ABSOLUTELY NO WARRANTY. 231s You are welcome to redistribute it under certain conditions. 231s Type 'license()' or 'licence()' for distribution details. 231s 231s R is a collaborative project with many contributors. 231s Type 'contributors()' for more information and 231s 'citation()' on how to cite R or R packages in publications. 231s 231s Type 'demo()' for some demos, 'help()' for on-line help, or 231s 'help.start()' for an HTML browser interface to help. 231s Type 'q()' to quit R. 231s 231s > library('SummarizedExperiment') 231s Loading required package: MatrixGenerics 231s Loading required package: matrixStats 231s 231s Attaching package: ‘MatrixGenerics’ 231s 231s The following objects are masked from ‘package:matrixStats’: 231s 231s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 231s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 231s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 231s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 231s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 231s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 231s colWeightedMeans, colWeightedMedians, colWeightedSds, 231s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 231s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 231s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 231s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 231s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 231s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 231s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 231s rowWeightedSds, rowWeightedVars 231s 231s Loading required package: GenomicRanges 231s Loading required package: stats4 232s Loading required package: BiocGenerics 232s 232s Attaching package: ‘BiocGenerics’ 232s 232s The following objects are masked from ‘package:stats’: 232s 232s IQR, mad, sd, var, xtabs 232s 232s The following objects are masked from ‘package:base’: 232s 232s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 232s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 232s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 232s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 232s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 232s table, tapply, union, unique, unsplit, which.max, which.min 232s 232s Loading required package: S4Vectors 232s 232s Attaching package: ‘S4Vectors’ 232s 232s The following object is masked from ‘package:utils’: 232s 232s findMatches 232s 232s The following objects are masked from ‘package:base’: 232s 232s expand.grid, I, unname 232s 232s Loading required package: IRanges 233s Loading required package: GenomeInfoDb 234s Loading required package: Biobase 234s Welcome to Bioconductor 234s 234s Vignettes contain introductory material; view with 234s 'browseVignettes()'. To cite Bioconductor, see 234s 'citation("Biobase")', and for packages 'citation("pkgname")'. 234s 234s 234s Attaching package: ‘Biobase’ 234s 234s The following object is masked from ‘package:MatrixGenerics’: 234s 234s rowMedians 234s 234s The following objects are masked from ‘package:matrixStats’: 234s 234s anyMissing, rowMedians 234s 236s > 236s > 237s Other tests are currently unsupported! 237s They will be progressively added. 237s autopkgtest [17:49:56]: test pkg-r-autopkgtest: -----------------------] 238s autopkgtest [17:49:57]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 238s pkg-r-autopkgtest PASS 238s autopkgtest [17:49:57]: @@@@@@@@@@@@@@@@@@@@ summary 238s pkg-r-autopkgtest PASS 249s Creating nova instance adt-noble-arm64-r-bioc-summarizedexperiment-20240316-174559-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...