0s autopkgtest [17:45:35]: starting date and time: 2024-03-16 17:45:35+0000 0s autopkgtest [17:45:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:45:35]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qbb0sflq/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-structuralvariantannotation --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-2.secgroup --name adt-noble-arm64-r-bioc-structuralvariantannotation-20240316-174534-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 113s autopkgtest [17:47:28]: testbed dpkg architecture: arm64 114s autopkgtest [17:47:29]: testbed apt version: 2.7.12 114s autopkgtest [17:47:29]: @@@@@@@@@@@@@@@@@@@@ test bed setup 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 115s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 115s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 115s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 115s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 115s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 115s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 115s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 116s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 116s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 116s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 117s Fetched 9060 kB in 2s (5303 kB/s) 117s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 121s Calculating upgrade... 122s The following packages will be REMOVED: 122s libglib2.0-0 libssl3 122s The following NEW packages will be installed: 122s libglib2.0-0t64 libssl3t64 xdg-user-dirs 122s The following packages have been kept back: 122s curl 122s The following packages will be upgraded: 122s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 122s ubuntu-minimal ubuntu-standard 122s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 122s Need to get 4613 kB of archives. 122s After this operation, 211 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 122s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 122s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 122s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 122s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 122s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 122s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 122s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 122s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 123s Fetched 4613 kB in 1s (6934 kB/s) 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 123s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 123s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 124s udisks2 depends on libglib2.0-0 (>= 2.77.0). 124s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 124s python3-gi depends on libglib2.0-0 (>= 2.77.0). 124s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 124s netplan.io depends on libglib2.0-0 (>= 2.70.0). 124s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 124s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 124s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 124s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 124s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 124s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 124s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 124s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s fwupd depends on libglib2.0-0 (>= 2.79.0). 124s bolt depends on libglib2.0-0 (>= 2.56.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 124s Selecting previously unselected package libglib2.0-0t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 124s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 124s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 124s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 124s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 124s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 124s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 124s wget depends on libssl3 (>= 3.0.0). 124s u-boot-tools depends on libssl3 (>= 3.0.0). 124s tnftp depends on libssl3 (>= 3.0.0). 124s tcpdump depends on libssl3 (>= 3.0.0). 124s systemd-resolved depends on libssl3 (>= 3.0.0). 124s systemd depends on libssl3 (>= 3.0.0). 124s sudo depends on libssl3 (>= 3.0.0). 124s sbsigntool depends on libssl3 (>= 3.0.0). 124s rsync depends on libssl3 (>= 3.0.0). 124s python3-cryptography depends on libssl3 (>= 3.0.0). 124s openssh-server depends on libssl3 (>= 3.0.10). 124s openssh-client depends on libssl3 (>= 3.0.10). 124s mtd-utils depends on libssl3 (>= 3.0.0). 124s mokutil depends on libssl3 (>= 3.0.0). 124s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 124s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 124s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 124s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 124s libnvme1 depends on libssl3 (>= 3.0.0). 124s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 124s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 124s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 124s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 124s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 124s kmod depends on libssl3 (>= 3.0.0). 124s dhcpcd-base depends on libssl3 (>= 3.0.0). 124s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 124s Selecting previously unselected package libssl3t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 124s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 124s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 124s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 124s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 124s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 124s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 124s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 124s Unpacking ubuntu-minimal (1.536) over (1.535) ... 124s Selecting previously unselected package xdg-user-dirs. 124s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 124s Unpacking xdg-user-dirs (0.18-1) ... 124s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 124s Unpacking ubuntu-standard (1.536) over (1.535) ... 124s Setting up ubuntu-minimal (1.536) ... 124s Setting up xdg-user-dirs (0.18-1) ... 124s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 124s Setting up libtirpc-common (1.3.4+ds-1.1) ... 124s Setting up ubuntu-standard (1.536) ... 124s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 124s No schema files found: doing nothing. 124s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 124s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 124s Setting up openssl (3.0.13-0ubuntu1) ... 124s Setting up readline-common (8.2-3.1) ... 124s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for install-info (7.1-3) ... 125s Processing triggers for libc-bin (2.39-0ubuntu2) ... 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 127s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 129s Reading package lists... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s Calculating upgrade... 130s The following packages have been kept back: 130s curl 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 135s autopkgtest [17:47:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 135s autopkgtest [17:47:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-structuralvariantannotation 137s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (dsc) [2600 B] 137s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (tar) [262 kB] 137s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (diff) [6836 B] 138s gpgv: Signature made Fri Dec 1 15:57:35 2023 UTC 138s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 138s gpgv: issuer "tillea@rki.de" 138s gpgv: Can't check signature: No public key 138s dpkg-source: warning: cannot verify inline signature for ./r-bioc-structuralvariantannotation_1.18.0+ds-1.dsc: no acceptable signature found 138s autopkgtest [17:47:53]: testing package r-bioc-structuralvariantannotation version 1.18.0+ds-1 138s autopkgtest [17:47:53]: build not needed 139s autopkgtest [17:47:54]: test pkg-r-autopkgtest: preparing testbed 140s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s Starting pkgProblemResolver with broken count: 0 141s Starting 2 pkgProblemResolver with broken count: 0 141s Done 142s The following additional packages will be installed: 142s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 142s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 142s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 142s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 142s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 142s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 142s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 142s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 142s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 142s libgfortran-13-dev libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 142s libharfbuzz0b libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 142s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 142s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 142s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 142s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 142s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 142s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 142s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 142s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 142s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 142s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 142s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libssh2-1 142s libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 142s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 142s libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev node-bootstrap-sass 142s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 142s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 142s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 142s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 142s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 142s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 142s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 142s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 142s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 142s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 142s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 142s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 142s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 142s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 142s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 142s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 142s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 142s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 142s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 142s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 142s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 142s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 142s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 142s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 142s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 142s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 142s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 142s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 142s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 142s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 142s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 142s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 142s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 142s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 142s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 142s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 142s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 142s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 142s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 142s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 142s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 142s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 142s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 142s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 142s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 142s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 142s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 142s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 142s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 142s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 142s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 142s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 142s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 142s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 142s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 142s zlib1g-dev 142s Suggested packages: 142s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 142s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 142s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 142s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 142s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 142s libboost-context1.83-dev libboost-contract1.83-dev 142s libboost-coroutine1.83-dev libboost-date-time1.83-dev 142s libboost-exception1.83-dev libboost-fiber1.83-dev 142s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 142s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 142s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 142s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 142s libboost-numpy1.83-dev libboost-program-options1.83-dev 142s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 142s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 142s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 142s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 142s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 142s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 142s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 142s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 142s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 142s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 142s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 142s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 142s texlive-extra-utils texinfo r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db 142s r-bioc-biocstyle r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 142s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 142s r-cran-batchtools r-cran-mockery r-cran-webmockr r-bioc-hdf5array 142s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-gviz 142s r-bioc-annotationhub r-cran-r.utils r-bioc-edger r-cran-markdown 142s r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats r-bioc-limma 142s r-bioc-rhdf5 r-bioc-snpstats r-cran-covr r-cran-ff r-cran-aer r-cran-bbmle 142s r-cran-boot r-cran-car r-cran-cardata r-cran-caret r-cran-cmprsk r-cran-coda 142s r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack 142s r-cran-glmnet r-cran-gmm r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps 142s r-cran-lme4 r-cran-lmtest r-cran-lsmeans r-cran-maps r-cran-mclust 142s r-cran-metafor r-cran-modeldata r-cran-multcomp r-cran-network 142s r-cran-ordinal r-cran-plm r-cran-psych r-cran-quantreg r-cran-robust 142s r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-sp r-cran-spdep 142s r-cran-spatialreg r-cran-spelling r-cran-survey r-cran-systemfit 142s r-cran-tseries r-cran-zoo r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm 142s r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip r-cran-dt 142s r-cran-lintr r-cran-pingr r-cran-bench r-cran-scatterplot3d r-cran-magick 142s r-cran-sf r-cran-getopt r-cran-formattable r-cran-nanotime 142s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-rsconnect 142s r-cran-svglite r-cran-inline r-cran-reticulate r-cran-rmpi r-cran-rlecuyer 142s r-cran-here r-cran-mockr 142s Recommended packages: 142s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 142s r-recommended r-doc-html r-bioc-biocversion r-cran-covr r-cran-brms 142s r-cran-broom.mixed r-cran-cmprsk r-cran-effects r-cran-emmeans r-cran-gam 142s r-cran-gee r-cran-geepack r-cran-ggeffects r-cran-glmmtmb r-cran-lavaan 142s r-cran-lme4 r-cran-mice r-cran-ordinal r-cran-parameters r-cran-plm 142s r-cran-pscl r-cran-rstanarm r-cran-spelling r-cran-survey r-cran-vgam 142s r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-fastmatch 142s r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr 142s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo 142s r-cran-rpostgresql r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-testit 142s r-cran-sodium r-cran-geosphere r-cran-ggforce r-cran-igraph 142s r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network r-cran-sna 142s r-cran-crosstalk r-cran-vdiffr r-cran-hexbin r-cran-multcomp r-cran-quantreg 142s r-cran-sf r-cran-svglite r-cran-reshape r-cran-mockr r-cran-cairo 142s r-cran-markdown r-cran-docopt r-cran-webfakes r-cran-r.rsp r-cran-gridsvg 142s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 142s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-r.devices 142s r-cran-gridgraphics r-cran-mathjaxr r-cran-doparallel r-cran-foreach 142s r-cran-iterators r-cran-itertools r-cran-future r-cran-pingr r-cran-git2r 142s r-cran-runit r-cran-dygraphs r-cran-rsconnect r-cran-r.methodss3 r-cran-r.oo 142s r-cran-dbitest r-cran-formattable r-cran-zeallot r-cran-renv 142s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 142s x11-xserver-utils 142s The following packages will be REMOVED: 142s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 142s The following NEW packages will be installed: 142s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 142s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 142s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 142s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 142s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 142s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 142s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 142s libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 142s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 142s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 142s libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 libharfbuzz0b 142s libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 142s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 142s libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 libjs-es5-shim 142s libjs-highlight.js libjs-jquery libjs-jquery-datatables 142s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 142s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 142s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 142s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 142s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 142s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 142s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 142s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libssh2-1 142s libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 142s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 142s libxft2 libxrender1 libxss1 libxt6t64 linux-libc-dev node-bootstrap-sass 142s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 142s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 142s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 142s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 142s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 142s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 142s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 142s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 142s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 142s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 142s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 142s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 142s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 142s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 142s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 142s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 142s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 142s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 142s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 142s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 142s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 142s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 142s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 142s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 142s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 142s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 142s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 142s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 142s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 142s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 142s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 142s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 142s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 142s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 142s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 142s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 142s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 142s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 142s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 142s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 142s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 142s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 142s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 142s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 142s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 142s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 142s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 142s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 142s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 142s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 142s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 142s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 142s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 142s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 142s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 142s zlib1g-dev 142s The following packages will be upgraded: 142s curl 142s 1 upgraded, 377 newly installed, 5 to remove and 0 not upgraded. 142s Need to get 390 MB/390 MB of archives. 142s After this operation, 1220 MB of additional disk space will be used. 142s Get:1 /tmp/autopkgtest.0SHwVf/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [820 B] 142s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 142s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 143s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 143s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 143s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 143s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 143s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 143s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 143s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 143s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 143s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 143s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 143s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 143s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 143s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 143s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 143s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 143s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 143s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 143s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 143s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 143s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 143s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 143s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 143s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 143s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 143s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 143s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 143s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 143s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 144s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 144s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 144s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 144s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 145s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 145s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 145s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 145s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 145s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 145s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 145s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 145s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 145s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 145s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 145s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 145s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 145s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 145s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 146s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 146s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 146s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 146s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 146s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 146s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 146s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 146s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 146s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 146s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 146s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 147s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 147s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 147s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 147s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 147s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 147s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 147s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 147s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 147s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 147s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-parser2.9 arm64 2.9.4-6 [21.4 kB] 147s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libssh2-1 arm64 1.11.0-4 [140 kB] 147s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgit2-1.7 arm64 1.7.2+ds-1ubuntu1 [527 kB] 147s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 147s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 147s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 147s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 147s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 148s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 148s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 148s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 148s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 148s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 148s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 148s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 148s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 148s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 148s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 148s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 148s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 148s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 148s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 148s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 148s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 148s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 148s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 148s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 148s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 148s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 149s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 149s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 149s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 149s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 149s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 149s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 149s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 149s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 149s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 149s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 149s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 149s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 149s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 149s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 149s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 149s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 149s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 149s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 149s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 149s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 149s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 149s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 149s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 149s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 149s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 149s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 149s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 149s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 149s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 149s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 149s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 149s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 149s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 150s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 150s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 150s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 150s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 150s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 150s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 150s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 151s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 151s Get:140 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 151s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 151s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 151s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 151s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 151s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 151s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 151s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 151s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 151s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 151s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 152s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 152s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 152s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 152s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 152s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 152s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 152s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 152s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 152s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 152s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 152s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 152s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 152s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 152s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 152s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 152s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 152s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 152s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 152s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 152s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 152s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 152s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 152s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 152s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 152s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 152s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 152s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 152s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 152s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 152s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 153s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 153s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 153s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 153s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 153s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 153s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 153s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 153s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 153s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 153s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 153s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 153s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 153s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 153s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 153s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 153s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 153s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 153s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 153s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 153s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 153s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 153s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 153s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 153s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 153s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 153s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 153s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 153s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 153s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 154s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 154s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 154s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 154s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 154s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 154s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 154s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 154s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 154s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 154s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 154s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 154s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 154s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 154s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 154s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 154s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 154s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 154s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 154s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 154s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 154s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 154s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 154s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 154s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 155s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 155s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 155s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 155s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 155s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 155s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 155s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 155s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 155s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 155s Get:243 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 155s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 155s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 155s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 155s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 155s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 155s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 155s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 155s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 155s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 155s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 155s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 155s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 155s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 155s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 155s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 155s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 155s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 155s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 155s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 155s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 155s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 155s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 155s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 155s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 156s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 156s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 156s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 156s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 156s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 156s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 156s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 156s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 156s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 156s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 156s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 156s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 156s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 156s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 156s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 156s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 156s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 156s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 156s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 156s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 156s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 156s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 156s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 156s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 156s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 156s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 156s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 157s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 157s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 157s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 157s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 157s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 157s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 157s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 157s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 157s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 157s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 157s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 158s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 158s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 158s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 158s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 158s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 158s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 158s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 158s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 158s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 158s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 158s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 158s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 158s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 158s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 158s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 158s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] 158s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-structuralvariantannotation all 1.18.0+ds-1 [413 kB] 158s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 158s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 158s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 158s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 158s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 158s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch all 2.0.0-1 [18.3 kB] 158s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cellranger all 1.1.0-3 [102 kB] 159s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-conflicted all 1.2.0-1.1 [60.8 kB] 159s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-credentials all 2.0.1-1 [207 kB] 159s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 159s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zip arm64 2.3.1-1 [125 kB] 159s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gert arm64 2.0.1+dfsg-1 [234 kB] 159s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 159s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr2 all 1.0.0-1 [553 kB] 159s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 159s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gh all 1.4.0-1 [108 kB] 159s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 159s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-whisker all 0.4.1-1 [62.7 kB] 159s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-usethis all 2.2.2-1 [882 kB] 159s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 159s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 159s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-downlit all 0.4.3-1 [125 kB] 159s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 159s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-textshaping arm64 0.3.7-2 [91.8 kB] 159s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ragg arm64 1.2.7-1 [385 kB] 159s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 159s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgdown all 2.0.7-2 [837 kB] 159s Get:350 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 159s Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-profvis arm64 0.3.8+dfsg-1 [105 kB] 159s Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 159s Get:353 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xopen all 1.0.0+dfsg-1 [18.9 kB] 159s Get:354 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcmdcheck all 1.4.0-2 [206 kB] 159s Get:355 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB] 159s Get:356 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-roxygen2 arm64 7.3.1-1 [710 kB] 159s Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rversions all 2.1.2-1 [59.4 kB] 159s Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 159s Get:359 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 159s Get:360 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 159s Get:361 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 159s Get:362 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 159s Get:363 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 159s Get:364 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-devtools all 2.4.5-1 [676 kB] 159s Get:365 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dtplyr all 1.3.1-1 [364 kB] 159s Get:366 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gargle all 1.5.2-1 [737 kB] 159s Get:367 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-uuid arm64 1.2-0-1 [47.9 kB] 159s Get:368 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-googledrive all 2.1.1-1 [1224 kB] 159s Get:369 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ids all 1.0.1-2 [124 kB] 159s Get:370 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-googlesheets4 all 1.1.1-1 [520 kB] 159s Get:371 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timechange arm64 0.3.0-1 [172 kB] 159s Get:372 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lubridate arm64 1.9.3+dfsg-1 [1010 kB] 159s Get:373 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modelr all 0.1.11-1 [195 kB] 159s Get:374 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readxl arm64 1.4.3-1 [726 kB] 159s Get:375 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reprex all 2.1.0-1 [465 kB] 159s Get:376 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-selectr all 0.4-2-2build1 [416 kB] 159s Get:377 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rvest all 1.0.3-1 [208 kB] 159s Get:378 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyverse all 2.0.0+dfsg-1 [84.5 kB] 161s Preconfiguring packages ... 161s Fetched 390 MB in 17s (22.8 MB/s) 161s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 161s wget depends on libpsl5 (>= 0.16.0). 161s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 161s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 161s 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 161s Removing libpsl5:arm64 (0.21.2-1build1) ... 161s Selecting previously unselected package libpsl5t64:arm64. 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 161s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 161s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 161s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 161s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 161s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 161s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 162s Selecting previously unselected package libcurl4t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 162s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 162s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 162s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 162s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 162s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 162s Removing libpng16-16:arm64 (1.6.43-1) ... 162s Selecting previously unselected package libpng16-16t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 162s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 162s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 162s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 162s parted depends on libreadline8 (>= 6.0). 162s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 162s gpgsm depends on libreadline8 (>= 6.0). 162s gpgconf depends on libreadline8 (>= 6.0). 162s gpg depends on libreadline8 (>= 6.0). 162s gawk depends on libreadline8 (>= 6.0). 162s fdisk depends on libreadline8 (>= 6.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 162s Removing libreadline8:arm64 (8.2-3) ... 162s Selecting previously unselected package libreadline8t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 162s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 162s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 162s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 162s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 162s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 162s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 162s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 162s lsof depends on libtirpc3 (>= 1.0.2). 162s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 162s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 162s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 162s iproute2 depends on libtirpc3 (>= 1.0.2). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 162s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 162s Selecting previously unselected package libtirpc3t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 162s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 162s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 162s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 162s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 162s Selecting previously unselected package libc-dev-bin. 162s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 162s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 162s Selecting previously unselected package linux-libc-dev:arm64. 162s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 162s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 162s Selecting previously unselected package libcrypt-dev:arm64. 162s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 162s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 162s Selecting previously unselected package libtirpc-dev:arm64. 162s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 162s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 162s Selecting previously unselected package libnsl-dev:arm64. 162s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 162s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 162s Selecting previously unselected package rpcsvc-proto. 162s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 162s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 162s Selecting previously unselected package libc6-dev:arm64. 162s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 162s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 163s Selecting previously unselected package libisl23:arm64. 163s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 163s Unpacking libisl23:arm64 (0.26-3) ... 163s Selecting previously unselected package libmpc3:arm64. 163s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 163s Unpacking libmpc3:arm64 (1.3.1-1) ... 163s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 163s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package cpp-13. 163s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package cpp-aarch64-linux-gnu. 163s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package cpp. 163s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking cpp (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package libcc1-0:arm64. 163s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libgomp1:arm64. 163s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libitm1:arm64. 163s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libatomic1:arm64. 163s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libasan8:arm64. 163s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package liblsan0:arm64. 163s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libtsan2:arm64. 163s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libubsan1:arm64. 163s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libhwasan0:arm64. 163s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libgcc-13-dev:arm64. 164s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 164s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-13. 164s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gcc-aarch64-linux-gnu. 164s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package gcc. 164s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gcc (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package libstdc++-13-dev:arm64. 164s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package g++-13-aarch64-linux-gnu. 165s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package g++-13. 165s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking g++-13 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package g++-aarch64-linux-gnu. 165s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package g++. 165s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking g++ (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package build-essential. 165s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 165s Unpacking build-essential (12.10ubuntu1) ... 165s Selecting previously unselected package dctrl-tools. 165s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 165s Unpacking dctrl-tools (2.24-3build2) ... 165s Selecting previously unselected package fonts-dejavu-mono. 165s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 165s Unpacking fonts-dejavu-mono (2.37-8) ... 165s Selecting previously unselected package fonts-dejavu-core. 165s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 165s Unpacking fonts-dejavu-core (2.37-8) ... 165s Selecting previously unselected package fontconfig-config. 165s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 165s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 165s Selecting previously unselected package libfontconfig1:arm64. 165s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 165s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 165s Selecting previously unselected package fontconfig. 165s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 165s Unpacking fontconfig (2.15.0-1ubuntu1) ... 165s Selecting previously unselected package fonts-font-awesome. 165s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 165s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 165s Selecting previously unselected package fonts-glyphicons-halflings. 165s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 165s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 165s Selecting previously unselected package fonts-mathjax. 165s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 165s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 166s Selecting previously unselected package libgfortran5:arm64. 166s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 166s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 166s Selecting previously unselected package libgfortran-13-dev:arm64. 166s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 166s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 166s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 166s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 166s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 166s Selecting previously unselected package gfortran-13. 166s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 166s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 166s Selecting previously unselected package gfortran-aarch64-linux-gnu. 166s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 166s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 166s Selecting previously unselected package gfortran. 166s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 166s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 166s Selecting previously unselected package icu-devtools. 166s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 166s Unpacking icu-devtools (74.2-1ubuntu1) ... 166s Selecting previously unselected package javascript-common. 166s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 166s Unpacking javascript-common (11+nmu1) ... 166s Selecting previously unselected package libblas3:arm64. 166s Preparing to unpack .../051-libblas3_3.12.0-3_arm64.deb ... 166s Unpacking libblas3:arm64 (3.12.0-3) ... 166s Selecting previously unselected package libblas-dev:arm64. 166s Preparing to unpack .../052-libblas-dev_3.12.0-3_arm64.deb ... 166s Unpacking libblas-dev:arm64 (3.12.0-3) ... 166s Selecting previously unselected package libboost1.83-dev:arm64. 166s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 166s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 168s Selecting previously unselected package libboost-dev:arm64. 168s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 168s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 168s Selecting previously unselected package libbz2-dev:arm64. 168s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 168s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 168s Selecting previously unselected package libpixman-1-0:arm64. 168s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_arm64.deb ... 168s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 168s Selecting previously unselected package libxcb-render0:arm64. 169s Preparing to unpack .../057-libxcb-render0_1.15-1_arm64.deb ... 169s Unpacking libxcb-render0:arm64 (1.15-1) ... 169s Selecting previously unselected package libxcb-shm0:arm64. 169s Preparing to unpack .../058-libxcb-shm0_1.15-1_arm64.deb ... 169s Unpacking libxcb-shm0:arm64 (1.15-1) ... 169s Selecting previously unselected package libxrender1:arm64. 169s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 169s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 169s Selecting previously unselected package libcairo2:arm64. 169s Preparing to unpack .../060-libcairo2_1.18.0-1_arm64.deb ... 169s Unpacking libcairo2:arm64 (1.18.0-1) ... 169s Selecting previously unselected package libdatrie1:arm64. 169s Preparing to unpack .../061-libdatrie1_0.2.13-3_arm64.deb ... 169s Unpacking libdatrie1:arm64 (0.2.13-3) ... 169s Selecting previously unselected package libdeflate0:arm64. 169s Preparing to unpack .../062-libdeflate0_1.19-1_arm64.deb ... 169s Unpacking libdeflate0:arm64 (1.19-1) ... 169s Selecting previously unselected package libhttp-parser2.9:arm64. 169s Preparing to unpack .../063-libhttp-parser2.9_2.9.4-6_arm64.deb ... 169s Unpacking libhttp-parser2.9:arm64 (2.9.4-6) ... 169s Selecting previously unselected package libssh2-1:arm64. 169s Preparing to unpack .../064-libssh2-1_1.11.0-4_arm64.deb ... 169s Unpacking libssh2-1:arm64 (1.11.0-4) ... 170s Selecting previously unselected package libgit2-1.7:arm64. 170s Preparing to unpack .../065-libgit2-1.7_1.7.2+ds-1ubuntu1_arm64.deb ... 170s Unpacking libgit2-1.7:arm64 (1.7.2+ds-1ubuntu1) ... 170s Selecting previously unselected package libgraphite2-3:arm64. 170s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 170s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 170s Selecting previously unselected package libharfbuzz0b:arm64. 170s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 170s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 170s Selecting previously unselected package x11-common. 170s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 170s Unpacking x11-common (1:7.7+23ubuntu2) ... 170s Selecting previously unselected package libice6:arm64. 170s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 170s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 170s Selecting previously unselected package libicu-dev:arm64. 170s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 170s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 170s Selecting previously unselected package libjpeg-turbo8:arm64. 170s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 170s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 170s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 171s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 171s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 171s Selecting previously unselected package libjpeg8:arm64. 171s Preparing to unpack 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libjs-bootstrap4 (4.6.1+dfsg1-4) ... 171s Selecting previously unselected package libjs-d3. 171s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 171s Unpacking libjs-d3 (3.5.17-4) ... 171s Selecting previously unselected package libjs-es5-shim. 171s Preparing to unpack .../080-libjs-es5-shim_4.6.7-2_all.deb ... 171s Unpacking libjs-es5-shim (4.6.7-2) ... 172s Selecting previously unselected package libjs-highlight.js. 172s Preparing to unpack .../081-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 172s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 172s Selecting previously unselected package libjs-jquery. 172s Preparing to unpack .../082-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 172s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 172s Selecting previously unselected package libjs-jquery-datatables. 172s Preparing to unpack .../083-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 172s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 172s Selecting previously unselected package libjs-sifter.js. 172s Preparing to unpack .../084-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 172s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 172s Selecting previously unselected package libjs-microplugin.js. 172s Preparing to unpack .../085-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 172s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 172s Selecting previously unselected package libjs-jquery-selectize.js. 172s Preparing to unpack .../086-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 172s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 172s Selecting previously unselected package libjs-jquery-ui. 172s Preparing to unpack .../087-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 172s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 173s Selecting previously unselected package libjs-json. 173s Preparing to unpack .../088-libjs-json_0~20221030+~1.0.8-1_all.deb ... 173s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 173s Selecting previously unselected package libjs-prettify. 173s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 173s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 173s Selecting previously unselected package liblapack3:arm64. 173s Preparing to unpack .../090-liblapack3_3.12.0-3_arm64.deb ... 173s Unpacking liblapack3:arm64 (3.12.0-3) ... 173s Selecting previously unselected package liblapack-dev:arm64. 173s Preparing to unpack .../091-liblapack-dev_3.12.0-3_arm64.deb ... 173s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 173s Selecting previously unselected package liblerc4:arm64. 173s Preparing to unpack .../092-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 173s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 173s Selecting previously unselected package liblua5.4-0:arm64. 173s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_arm64.deb ... 173s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 173s Selecting previously unselected package libncurses-dev:arm64. 174s Preparing to unpack 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.../099-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 174s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 174s Selecting previously unselected package libpaper1:arm64. 174s Preparing to unpack .../100-libpaper1_1.1.29_arm64.deb ... 174s Unpacking libpaper1:arm64 (1.1.29) ... 174s Selecting previously unselected package libpaper-utils. 174s Preparing to unpack .../101-libpaper-utils_1.1.29_arm64.deb ... 174s Unpacking libpaper-utils (1.1.29) ... 174s Selecting previously unselected package libpcre2-16-0:arm64. 174s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 174s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 174s Selecting previously unselected package libpcre2-32-0:arm64. 174s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 174s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 174s Selecting previously unselected package libpcre2-posix3:arm64. 174s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 174s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 174s Selecting previously unselected package libpcre2-dev:arm64. 174s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 174s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 174s Selecting previously unselected package libpkgconf3:arm64. 174s Preparing to unpack .../106-libpkgconf3_1.8.1-2_arm64.deb ... 174s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 174s Selecting previously unselected package zlib1g-dev:arm64. 174s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 174s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 174s Selecting previously unselected package libpng-dev:arm64. 174s Preparing to unpack .../108-libpng-dev_1.6.43-3_arm64.deb ... 174s Unpacking libpng-dev:arm64 (1.6.43-3) ... 174s Selecting previously unselected package libreadline-dev:arm64. 174s Preparing to unpack .../109-libreadline-dev_8.2-3.1_arm64.deb ... 174s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 174s Selecting previously unselected package libsharpyuv0:arm64. 174s Preparing to unpack .../110-libsharpyuv0_1.3.2-0.4_arm64.deb ... 174s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 175s Selecting previously unselected package libsm6:arm64. 175s Preparing to unpack .../111-libsm6_2%3a1.2.3-1build2_arm64.deb ... 175s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 175s Selecting previously unselected package libtcl8.6:arm64. 175s Preparing to unpack .../112-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 175s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 175s Selecting previously unselected package libjbig0:arm64. 175s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 175s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 175s Selecting previously unselected package libwebp7:arm64. 175s Preparing to unpack .../114-libwebp7_1.3.2-0.4_arm64.deb ... 175s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 175s Selecting previously unselected package libtiff6:arm64. 175s Preparing to unpack .../115-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 175s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 175s Selecting previously unselected package libxft2:arm64. 175s Preparing to unpack .../116-libxft2_2.3.6-1_arm64.deb ... 175s Unpacking libxft2:arm64 (2.3.6-1) ... 175s Selecting previously unselected package libxss1:arm64. 175s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build2_arm64.deb ... 175s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 175s Selecting previously unselected package libtk8.6:arm64. 175s Preparing to unpack .../118-libtk8.6_8.6.13-2_arm64.deb ... 175s Unpacking libtk8.6:arm64 (8.6.13-2) ... 175s Selecting previously unselected package libxt6t64:arm64. 175s Preparing to unpack .../119-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 175s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 175s Selecting previously unselected package node-bootstrap-sass. 175s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 175s Unpacking node-bootstrap-sass (3.4.3-2) ... 175s Selecting previously unselected package node-html5shiv. 175s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 175s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 175s Selecting previously unselected package node-normalize.css. 175s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 175s Unpacking node-normalize.css (8.0.1-5) ... 175s Selecting previously unselected package pandoc-data. 175s Preparing to unpack .../123-pandoc-data_3.1.3-1_all.deb ... 175s Unpacking pandoc-data (3.1.3-1) ... 175s Selecting previously unselected package pandoc. 175s Preparing to unpack .../124-pandoc_3.1.3+ds-2_arm64.deb ... 175s Unpacking pandoc (3.1.3+ds-2) ... 176s Selecting previously unselected package pkgconf-bin. 176s Preparing to unpack .../125-pkgconf-bin_1.8.1-2_arm64.deb ... 176s Unpacking pkgconf-bin (1.8.1-2) ... 176s Selecting previously unselected package pkgconf:arm64. 177s Preparing to unpack .../126-pkgconf_1.8.1-2_arm64.deb ... 177s Unpacking pkgconf:arm64 (1.8.1-2) ... 177s Selecting previously unselected package pkg-config:arm64. 177s Preparing to unpack .../127-pkg-config_1.8.1-2_arm64.deb ... 177s Unpacking pkg-config:arm64 (1.8.1-2) ... 177s Selecting previously unselected package zip. 177s Preparing to unpack .../128-zip_3.0-13_arm64.deb ... 177s Unpacking zip (3.0-13) ... 177s Selecting previously unselected package unzip. 177s Preparing to unpack .../129-unzip_6.0-28ubuntu3_arm64.deb ... 177s Unpacking unzip (6.0-28ubuntu3) ... 177s Selecting previously unselected package xdg-utils. 177s Preparing to unpack .../130-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 177s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 177s Selecting previously unselected package r-base-core. 177s Preparing to unpack .../131-r-base-core_4.3.3-2build1_arm64.deb ... 177s Unpacking r-base-core (4.3.3-2build1) ... 177s Selecting previously unselected package liblzma-dev:arm64. 177s Preparing to unpack .../132-liblzma-dev_5.4.5-0.3_arm64.deb ... 177s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 177s Selecting previously unselected package r-base-dev. 177s Preparing to unpack .../133-r-base-dev_4.3.3-2build1_all.deb ... 177s Unpacking r-base-dev (4.3.3-2build1) ... 177s Selecting previously unselected package pkg-r-autopkgtest. 177s Preparing to unpack .../134-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 177s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 178s Selecting previously unselected package r-bioc-biocgenerics. 178s Preparing to unpack .../135-r-bioc-biocgenerics_0.48.1-2_all.deb ... 178s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 178s Selecting previously unselected package r-bioc-biobase. 178s Preparing to unpack .../136-r-bioc-biobase_2.62.0-1_arm64.deb ... 178s Unpacking r-bioc-biobase (2.62.0-1) ... 178s Selecting previously unselected package r-bioc-s4vectors. 178s Preparing to unpack .../137-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 178s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 178s Selecting previously unselected package r-bioc-iranges. 178s Preparing to unpack .../138-r-bioc-iranges_2.36.0-1_arm64.deb ... 178s Unpacking r-bioc-iranges (2.36.0-1) ... 178s Selecting previously unselected package r-cran-dbi. 178s Preparing to unpack .../139-r-cran-dbi_1.2.2-1_all.deb ... 178s Unpacking r-cran-dbi (1.2.2-1) ... 178s Selecting previously unselected package r-cran-bit. 178s Preparing to unpack .../140-r-cran-bit_4.0.5-1_arm64.deb ... 178s Unpacking r-cran-bit (4.0.5-1) ... 178s Selecting previously unselected package r-cran-bit64. 178s Preparing to unpack .../141-r-cran-bit64_4.0.5-1_arm64.deb ... 178s Unpacking r-cran-bit64 (4.0.5-1) ... 178s Selecting previously unselected package r-cran-rlang. 178s Preparing to unpack .../142-r-cran-rlang_1.1.3-1_arm64.deb ... 178s Unpacking r-cran-rlang (1.1.3-1) ... 178s Selecting previously unselected package r-cran-cli. 178s Preparing to unpack .../143-r-cran-cli_3.6.2-1_arm64.deb ... 178s Unpacking r-cran-cli (3.6.2-1) ... 178s Selecting previously unselected package r-cran-glue. 178s Preparing to unpack .../144-r-cran-glue_1.7.0-1_arm64.deb ... 178s Unpacking r-cran-glue (1.7.0-1) ... 178s Selecting previously unselected package r-cran-lifecycle. 179s Preparing to unpack .../145-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 179s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 179s Selecting previously unselected package r-cran-vctrs. 179s Preparing to unpack .../146-r-cran-vctrs_0.6.5-1_arm64.deb ... 179s Unpacking r-cran-vctrs (0.6.5-1) ... 179s Selecting previously unselected package r-cran-blob. 179s Preparing to unpack .../147-r-cran-blob_1.2.4-1_all.deb ... 179s Unpacking r-cran-blob (1.2.4-1) ... 179s Selecting previously unselected package r-cran-fastmap. 179s Preparing to unpack .../148-r-cran-fastmap_1.1.1-1_arm64.deb ... 179s Unpacking r-cran-fastmap (1.1.1-1) ... 179s Selecting previously unselected package r-cran-cachem. 179s Preparing to unpack .../149-r-cran-cachem_1.0.8-1_arm64.deb ... 179s Unpacking r-cran-cachem (1.0.8-1) ... 179s Selecting previously unselected package r-cran-memoise. 179s Preparing to unpack .../150-r-cran-memoise_2.0.1-1_all.deb ... 179s Unpacking r-cran-memoise (2.0.1-1) ... 179s Selecting previously unselected package r-cran-pkgconfig. 179s Preparing to unpack .../151-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 179s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 179s Selecting previously unselected package r-cran-plogr. 179s Preparing to unpack .../152-r-cran-plogr_0.2.0-3build1_all.deb ... 179s Unpacking r-cran-plogr (0.2.0-3build1) ... 179s Selecting previously unselected package r-cran-cpp11. 179s Preparing to unpack .../153-r-cran-cpp11_0.4.7-1_all.deb ... 179s Unpacking r-cran-cpp11 (0.4.7-1) ... 179s Selecting previously unselected package r-cran-rsqlite. 179s Preparing to unpack .../154-r-cran-rsqlite_2.3.4-1_arm64.deb ... 179s Unpacking r-cran-rsqlite (2.3.4-1) ... 179s Selecting previously unselected package r-cran-curl. 179s Preparing to unpack .../155-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 179s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-jsonlite. 179s Preparing to unpack .../156-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 179s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 179s Selecting previously unselected package r-cran-mime. 179s Preparing to unpack .../157-r-cran-mime_0.12-1_arm64.deb ... 179s Unpacking r-cran-mime (0.12-1) ... 179s Selecting previously unselected package r-cran-sys. 179s Preparing to unpack .../158-r-cran-sys_3.4.2-1_arm64.deb ... 179s Unpacking r-cran-sys (3.4.2-1) ... 179s Selecting previously unselected package r-cran-askpass. 179s Preparing to unpack .../159-r-cran-askpass_1.2.0-1_arm64.deb ... 179s Unpacking r-cran-askpass (1.2.0-1) ... 179s Selecting previously unselected package r-cran-openssl. 179s Preparing to unpack .../160-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 179s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 179s Selecting previously unselected package r-cran-r6. 179s Preparing to unpack .../161-r-cran-r6_2.5.1-1_all.deb ... 179s Unpacking r-cran-r6 (2.5.1-1) ... 179s Selecting previously unselected package r-cran-httr. 179s Preparing to unpack .../162-r-cran-httr_1.4.7+dfsg-1_all.deb ... 179s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 179s Selecting previously unselected package r-cran-png. 179s Preparing to unpack .../163-r-cran-png_0.1-8-1_arm64.deb ... 179s Unpacking r-cran-png (0.1-8-1) ... 179s Selecting previously unselected package r-bioc-zlibbioc. 179s Preparing to unpack .../164-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 179s Selecting previously unselected package r-bioc-xvector. 180s Preparing to unpack .../165-r-bioc-xvector_0.42.0-1_arm64.deb ... 180s Unpacking r-bioc-xvector (0.42.0-1) ... 180s Selecting previously unselected package r-cran-bitops. 180s Preparing to unpack .../166-r-cran-bitops_1.0-7-1_arm64.deb ... 180s Unpacking r-cran-bitops (1.0-7-1) ... 180s Selecting previously unselected package r-cran-rcurl. 180s Preparing to unpack .../167-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 180s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 180s Selecting previously unselected package r-bioc-genomeinfodbdata. 180s Preparing to unpack .../168-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 180s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 180s Selecting previously unselected package r-bioc-genomeinfodb. 180s Preparing to unpack .../169-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 180s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 180s Selecting previously unselected package r-cran-crayon. 180s Preparing to unpack .../170-r-cran-crayon_1.5.2-1_all.deb ... 180s Unpacking r-cran-crayon (1.5.2-1) ... 180s Selecting previously unselected package r-bioc-biostrings. 180s Preparing to unpack .../171-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 180s Selecting previously unselected package r-bioc-keggrest. 180s Preparing to unpack .../172-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 180s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 180s Selecting previously unselected package r-bioc-annotationdbi. 180s Preparing to unpack .../173-r-bioc-annotationdbi_1.64.1-1_all.deb ... 180s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 180s Selecting previously unselected package r-bioc-genomicranges. 180s Preparing to unpack .../174-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-lazyeval. 181s Preparing to unpack .../175-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 181s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 181s Selecting previously unselected package r-bioc-annotationfilter. 181s Preparing to unpack .../176-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 181s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-generics. 181s Preparing to unpack .../177-r-cran-generics_0.1.3-1_all.deb ... 181s Unpacking r-cran-generics (0.1.3-1) ... 181s Selecting previously unselected package r-cran-magrittr. 181s Preparing to unpack .../178-r-cran-magrittr_2.0.3-1_arm64.deb ... 181s Unpacking r-cran-magrittr (2.0.3-1) ... 181s Selecting previously unselected package r-cran-fansi. 181s Preparing to unpack .../179-r-cran-fansi_1.0.5-1_arm64.deb ... 181s Unpacking r-cran-fansi (1.0.5-1) ... 181s Selecting previously unselected package r-cran-utf8. 181s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_arm64.deb ... 181s Unpacking r-cran-utf8 (1.2.4-1) ... 181s Selecting previously unselected package r-cran-pillar. 181s Preparing to unpack .../181-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 181s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-tibble. 181s Preparing to unpack .../182-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 181s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 181s Selecting previously unselected package r-cran-withr. 181s Preparing to unpack .../183-r-cran-withr_2.5.0-1_all.deb ... 181s Unpacking r-cran-withr (2.5.0-1) ... 181s Selecting previously unselected package r-cran-tidyselect. 181s Preparing to unpack .../184-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 181s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-dplyr. 181s Preparing to unpack .../185-r-cran-dplyr_1.1.4-1_arm64.deb ... 181s Unpacking r-cran-dplyr (1.1.4-1) ... 181s Selecting previously unselected package r-cran-purrr. 182s Preparing to unpack .../186-r-cran-purrr_1.0.2-1_arm64.deb ... 182s Unpacking r-cran-purrr (1.0.2-1) ... 182s Selecting previously unselected package r-cran-stringi. 182s Preparing to unpack .../187-r-cran-stringi_1.8.3-1_arm64.deb ... 182s Unpacking r-cran-stringi (1.8.3-1) ... 182s Selecting previously unselected package r-cran-stringr. 182s Preparing to unpack .../188-r-cran-stringr_1.5.1-1_all.deb ... 182s Unpacking r-cran-stringr (1.5.1-1) ... 182s Selecting previously unselected package r-cran-tidyr. 182s Preparing to unpack .../189-r-cran-tidyr_1.3.1-1_arm64.deb ... 182s Unpacking r-cran-tidyr (1.3.1-1) ... 182s Selecting previously unselected package r-cran-dbplyr. 182s Preparing to unpack .../190-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 182s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-filelock. 182s Preparing to unpack .../191-r-cran-filelock_1.0.3-1_arm64.deb ... 182s Unpacking r-cran-filelock (1.0.3-1) ... 182s Selecting previously unselected package r-bioc-biocfilecache. 182s Preparing to unpack .../192-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 182s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 182s Selecting previously unselected package r-bioc-biocio. 182s Preparing to unpack .../193-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 182s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-formatr. 182s Preparing to unpack .../194-r-cran-formatr_1.14-1_all.deb ... 182s Unpacking r-cran-formatr (1.14-1) ... 182s Selecting previously unselected package r-cran-lambda.r. 182s Preparing to unpack .../195-r-cran-lambda.r_1.2.4-2build1_all.deb ... 182s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 182s Selecting previously unselected package r-cran-futile.options. 182s Preparing to unpack .../196-r-cran-futile.options_1.0.1-3build1_all.deb ... 182s Unpacking r-cran-futile.options (1.0.1-3build1) ... 182s Selecting previously unselected package r-cran-futile.logger. 183s Preparing to unpack .../197-r-cran-futile.logger_1.4.3-4build1_all.deb ... 183s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 183s Selecting previously unselected package r-cran-snow. 183s Preparing to unpack .../198-r-cran-snow_1%3a0.4.4-2_all.deb ... 183s Unpacking r-cran-snow (1:0.4.4-2) ... 183s Selecting previously unselected package r-cran-codetools. 183s Preparing to unpack .../199-r-cran-codetools_0.2-19-1_all.deb ... 183s Unpacking r-cran-codetools (0.2-19-1) ... 183s Selecting previously unselected package r-cran-bh. 183s Preparing to unpack .../200-r-cran-bh_1.84.0-1_all.deb ... 183s Unpacking r-cran-bh (1.84.0-1) ... 183s Selecting previously unselected package r-bioc-biocparallel. 183s Preparing to unpack .../201-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 183s Unpacking r-bioc-biocparallel (1.36.0-1) ... 183s Selecting previously unselected package r-cran-xml. 183s Preparing to unpack .../202-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 183s Unpacking r-cran-xml (3.99-0.16.1-1) ... 183s Selecting previously unselected package r-cran-hms. 183s Preparing to unpack .../203-r-cran-hms_1.1.3-1_all.deb ... 183s Unpacking r-cran-hms (1.1.3-1) ... 183s Selecting previously unselected package r-cran-prettyunits. 184s Preparing to unpack .../204-r-cran-prettyunits_1.2.0-1_all.deb ... 184s Unpacking r-cran-prettyunits (1.2.0-1) ... 184s Selecting previously unselected package r-cran-progress. 184s Preparing to unpack .../205-r-cran-progress_1.2.3-1_all.deb ... 184s Unpacking r-cran-progress (1.2.3-1) ... 184s Selecting previously unselected package r-cran-digest. 184s Preparing to unpack .../206-r-cran-digest_0.6.34-1_arm64.deb ... 184s Unpacking r-cran-digest (0.6.34-1) ... 184s Selecting previously unselected package r-cran-rappdirs. 184s Preparing to unpack .../207-r-cran-rappdirs_0.3.3-1_arm64.deb ... 184s Unpacking r-cran-rappdirs (0.3.3-1) ... 184s Selecting previously unselected package r-cran-xml2. 184s Preparing to unpack .../208-r-cran-xml2_1.3.6-1_arm64.deb ... 184s Unpacking r-cran-xml2 (1.3.6-1) ... 184s Selecting previously unselected package r-bioc-biomart. 184s Preparing to unpack .../209-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 184s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 184s Selecting previously unselected package r-cran-farver. 184s Preparing to unpack .../210-r-cran-farver_2.1.1-1_arm64.deb ... 184s Unpacking r-cran-farver (2.1.1-1) ... 184s Selecting previously unselected package r-cran-labeling. 184s Preparing to unpack .../211-r-cran-labeling_0.4.3-1_all.deb ... 184s Unpacking r-cran-labeling (0.4.3-1) ... 184s Selecting previously unselected package r-cran-colorspace. 184s Preparing to unpack .../212-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 184s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 184s Selecting previously unselected package r-cran-munsell. 184s Preparing to unpack .../213-r-cran-munsell_0.5.0-2build1_all.deb ... 184s Unpacking r-cran-munsell (0.5.0-2build1) ... 184s Selecting previously unselected package r-cran-rcolorbrewer. 184s Preparing to unpack .../214-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 184s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 184s Selecting previously unselected package r-cran-viridislite. 184s Preparing to unpack .../215-r-cran-viridislite_0.4.2-2_all.deb ... 184s Unpacking r-cran-viridislite (0.4.2-2) ... 184s Selecting previously unselected package r-cran-scales. 184s Preparing to unpack .../216-r-cran-scales_1.3.0-1_all.deb ... 184s Unpacking r-cran-scales (1.3.0-1) ... 184s Selecting previously unselected package r-cran-gtable. 184s Preparing to unpack .../217-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 184s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 184s Selecting previously unselected package r-cran-isoband. 184s Preparing to unpack .../218-r-cran-isoband_0.2.7-1_arm64.deb ... 184s Unpacking r-cran-isoband (0.2.7-1) ... 184s Selecting previously unselected package r-cran-mass. 184s Preparing to unpack .../219-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 184s Unpacking r-cran-mass (7.3-60.0.1-1) ... 184s Selecting previously unselected package r-cran-lattice. 184s Preparing to unpack .../220-r-cran-lattice_0.22-5-1_arm64.deb ... 184s Unpacking r-cran-lattice (0.22-5-1) ... 185s Selecting previously unselected package r-cran-nlme. 185s Preparing to unpack .../221-r-cran-nlme_3.1.164-1_arm64.deb ... 185s Unpacking r-cran-nlme (3.1.164-1) ... 185s Selecting previously unselected package r-cran-matrix. 185s Preparing to unpack .../222-r-cran-matrix_1.6-5-1_arm64.deb ... 185s Unpacking r-cran-matrix (1.6-5-1) ... 185s Selecting previously unselected package r-cran-mgcv. 185s Preparing to unpack .../223-r-cran-mgcv_1.9-1-1_arm64.deb ... 185s Unpacking r-cran-mgcv (1.9-1-1) ... 185s Selecting previously unselected package r-cran-ggplot2. 185s Preparing to unpack .../224-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 185s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 185s Selecting previously unselected package r-cran-cluster. 185s Preparing to unpack .../225-r-cran-cluster_2.1.6-1_arm64.deb ... 185s Unpacking r-cran-cluster (2.1.6-1) ... 185s Selecting previously unselected package r-cran-survival. 185s Preparing to unpack .../226-r-cran-survival_3.5-8-1_arm64.deb ... 185s Unpacking r-cran-survival (3.5-8-1) ... 185s Selecting previously unselected package r-cran-rpart. 186s Preparing to unpack .../227-r-cran-rpart_4.1.23-1_arm64.deb ... 186s Unpacking r-cran-rpart (4.1.23-1) ... 186s Selecting previously unselected package r-cran-nnet. 186s Preparing to unpack .../228-r-cran-nnet_7.3-19-2_arm64.deb ... 186s Unpacking r-cran-nnet (7.3-19-2) ... 186s Selecting previously unselected package r-cran-foreign. 186s Preparing to unpack .../229-r-cran-foreign_0.8.86-1_arm64.deb ... 186s Unpacking r-cran-foreign (0.8.86-1) ... 186s Selecting previously unselected package r-cran-gridextra. 186s Preparing to unpack .../230-r-cran-gridextra_2.3-3build1_all.deb ... 186s Unpacking r-cran-gridextra (2.3-3build1) ... 186s Selecting previously unselected package r-cran-data.table. 186s Preparing to unpack .../231-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 186s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 186s Selecting previously unselected package r-cran-evaluate. 186s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 186s Unpacking r-cran-evaluate (0.23-1) ... 186s Selecting previously unselected package r-cran-xfun. 186s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 186s Unpacking r-cran-xfun (0.41+dfsg-1) ... 186s Selecting previously unselected package r-cran-highr. 186s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 186s Unpacking r-cran-highr (0.10+dfsg-1) ... 186s Selecting previously unselected package r-cran-yaml. 186s Preparing to unpack .../235-r-cran-yaml_2.3.8-1_arm64.deb ... 186s Unpacking r-cran-yaml (2.3.8-1) ... 186s Selecting previously unselected package libjs-mathjax. 186s Preparing to unpack .../236-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 186s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 187s Selecting previously unselected package r-cran-knitr. 187s Preparing to unpack .../237-r-cran-knitr_1.45+dfsg-1_all.deb ... 187s Unpacking r-cran-knitr (1.45+dfsg-1) ... 187s Selecting previously unselected package r-cran-backports. 187s Preparing to unpack .../238-r-cran-backports_1.4.1-1_arm64.deb ... 187s Unpacking r-cran-backports (1.4.1-1) ... 187s Selecting previously unselected package r-cran-checkmate. 187s Preparing to unpack .../239-r-cran-checkmate_2.3.1-1_arm64.deb ... 187s Unpacking r-cran-checkmate (2.3.1-1) ... 187s Selecting previously unselected package r-cran-base64enc. 187s Preparing to unpack .../240-r-cran-base64enc_0.1-3-3_arm64.deb ... 187s Unpacking r-cran-base64enc (0.1-3-3) ... 187s Selecting previously unselected package r-cran-ellipsis. 187s Preparing to unpack .../241-r-cran-ellipsis_0.3.2-2_arm64.deb ... 187s Unpacking r-cran-ellipsis (0.3.2-2) ... 187s Selecting previously unselected package r-cran-htmltools. 187s Preparing to unpack .../242-r-cran-htmltools_0.5.7-1_arm64.deb ... 187s Unpacking r-cran-htmltools (0.5.7-1) ... 187s Selecting previously unselected package r-cran-jquerylib. 187s Preparing to unpack .../243-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 187s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 187s Selecting previously unselected package r-cran-fs. 187s Preparing to unpack .../244-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 187s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 187s Selecting previously unselected package r-cran-sass. 187s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 187s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 187s Selecting previously unselected package r-cran-bslib. 187s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 187s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-fontawesome. 188s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 188s Unpacking r-cran-fontawesome (0.5.2-1) ... 188s Selecting previously unselected package r-cran-tinytex. 188s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 188s Unpacking r-cran-tinytex (0.49-1) ... 188s Selecting previously unselected package libjs-modernizr. 188s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 188s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 188s Selecting previously unselected package r-cran-littler. 188s Preparing to unpack .../250-r-cran-littler_0.3.19-1_arm64.deb ... 188s Unpacking r-cran-littler (0.3.19-1) ... 188s Selecting previously unselected package r-cran-pkgkitten. 188s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 188s Unpacking r-cran-pkgkitten (0.2.3-1) ... 188s Selecting previously unselected package r-cran-rcpp. 188s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_arm64.deb ... 188s Unpacking r-cran-rcpp (1.0.12-1) ... 188s Selecting previously unselected package r-cran-later. 188s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 188s Unpacking r-cran-later (1.3.2+dfsg-1) ... 188s Selecting previously unselected package r-cran-promises. 188s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 188s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 188s Selecting previously unselected package r-cran-httpuv. 188s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 188s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 188s Selecting previously unselected package r-cran-xtable. 188s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 188s Unpacking r-cran-xtable (1:1.8-4-2) ... 188s Selecting previously unselected package r-cran-sourcetools. 188s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 188s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 188s Selecting previously unselected package r-cran-commonmark. 188s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_arm64.deb ... 188s Unpacking r-cran-commonmark (1.9.1-1) ... 188s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 188s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 188s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 188s Selecting previously unselected package r-cran-shiny. 188s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 188s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-rmarkdown. 189s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 189s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 189s Selecting previously unselected package r-cran-htmlwidgets. 189s Preparing to unpack .../262-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 189s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-rstudioapi. 189s Preparing to unpack .../263-r-cran-rstudioapi_0.15.0-1_all.deb ... 189s Unpacking r-cran-rstudioapi (0.15.0-1) ... 189s Selecting previously unselected package r-cran-htmltable. 189s Preparing to unpack .../264-r-cran-htmltable_2.4.2-1_all.deb ... 189s Unpacking r-cran-htmltable (2.4.2-1) ... 189s Selecting previously unselected package r-cran-viridis. 189s Preparing to unpack .../265-r-cran-viridis_0.6.5-1_all.deb ... 189s Unpacking r-cran-viridis (0.6.5-1) ... 189s Selecting previously unselected package r-cran-formula. 189s Preparing to unpack .../266-r-cran-formula_1.2-5-1_all.deb ... 189s Unpacking r-cran-formula (1.2-5-1) ... 189s Selecting previously unselected package r-cran-chron. 189s Preparing to unpack .../267-r-cran-chron_2.3-61-2_arm64.deb ... 189s Unpacking r-cran-chron (2.3-61-2) ... 189s Selecting previously unselected package r-cran-jpeg. 189s Preparing to unpack .../268-r-cran-jpeg_0.1-10-1_arm64.deb ... 189s Unpacking r-cran-jpeg (0.1-10-1) ... 189s Selecting previously unselected package r-cran-deldir. 189s Preparing to unpack .../269-r-cran-deldir_2.0-4-1_arm64.deb ... 189s Unpacking r-cran-deldir (2.0-4-1) ... 189s Selecting previously unselected package r-cran-rcppeigen. 189s Preparing to unpack .../270-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 189s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 189s Selecting previously unselected package r-cran-interp. 190s Preparing to unpack .../271-r-cran-interp_1.1-6-1_arm64.deb ... 190s Unpacking r-cran-interp (1.1-6-1) ... 190s Selecting previously unselected package r-cran-latticeextra. 190s Preparing to unpack .../272-r-cran-latticeextra_0.6-30-1_all.deb ... 190s Unpacking r-cran-latticeextra (0.6-30-1) ... 190s Selecting previously unselected package r-cran-acepack. 190s Preparing to unpack .../273-r-cran-acepack_1.4.2-1_arm64.deb ... 190s Unpacking r-cran-acepack (1.4.2-1) ... 190s Selecting previously unselected package r-cran-hmisc. 190s Preparing to unpack .../274-r-cran-hmisc_5.1-1-1_arm64.deb ... 190s Unpacking r-cran-hmisc (5.1-1-1) ... 190s Selecting previously unselected package r-cran-dichromat. 190s Preparing to unpack .../275-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 190s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 190s Selecting previously unselected package r-cran-matrixstats. 190s Preparing to unpack .../276-r-cran-matrixstats_1.2.0-1_arm64.deb ... 190s Unpacking r-cran-matrixstats (1.2.0-1) ... 190s Selecting previously unselected package r-bioc-matrixgenerics. 190s Preparing to unpack .../277-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 190s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 190s Selecting previously unselected package r-cran-abind. 190s Preparing to unpack .../278-r-cran-abind_1.4-5-2_all.deb ... 190s Unpacking r-cran-abind (1.4-5-2) ... 190s Selecting previously unselected package r-bioc-s4arrays. 190s Preparing to unpack .../279-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-sparsearray. 190s Preparing to unpack .../280-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 190s Selecting previously unselected package r-bioc-delayedarray. 190s Preparing to unpack .../281-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-summarizedexperiment. 190s Preparing to unpack .../282-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rhtslib. 190s Preparing to unpack .../283-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rsamtools. 190s Preparing to unpack .../284-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-genomicalignments. 190s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 190s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 190s Selecting previously unselected package r-cran-rjson. 190s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_arm64.deb ... 190s Unpacking r-cran-rjson (0.2.21-1) ... 191s Selecting previously unselected package r-cran-restfulr. 191s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_arm64.deb ... 191s Unpacking r-cran-restfulr (0.0.15-1) ... 191s Selecting previously unselected package r-bioc-rtracklayer. 191s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 191s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 191s Selecting previously unselected package r-bioc-genomicfeatures. 191s Preparing to unpack .../289-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 191s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 191s Selecting previously unselected package r-bioc-bsgenome. 191s Preparing to unpack .../290-r-bioc-bsgenome_1.70.2-1_all.deb ... 191s Unpacking r-bioc-bsgenome (1.70.2-1) ... 191s Selecting previously unselected package r-bioc-variantannotation. 191s Preparing to unpack .../291-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 191s Unpacking r-bioc-variantannotation (1.48.1-1) ... 191s Selecting previously unselected package r-bioc-protgenerics. 191s Preparing to unpack .../292-r-bioc-protgenerics_1.34.0-1_all.deb ... 191s Unpacking r-bioc-protgenerics (1.34.0-1) ... 191s Selecting previously unselected package r-bioc-ensembldb. 191s Preparing to unpack .../293-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 191s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 191s Selecting previously unselected package r-bioc-biovizbase. 191s Preparing to unpack .../294-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 191s Unpacking r-bioc-biovizbase (1.50.0-1) ... 191s Selecting previously unselected package r-cran-plyr. 191s Preparing to unpack .../295-r-cran-plyr_1.8.9-1_arm64.deb ... 191s Unpacking r-cran-plyr (1.8.9-1) ... 191s Selecting previously unselected package r-cran-reshape2. 191s Preparing to unpack .../296-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 191s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 191s Selecting previously unselected package r-cran-biocmanager. 191s Preparing to unpack .../297-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 191s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 191s Selecting previously unselected package r-bioc-graph. 191s Preparing to unpack .../298-r-bioc-graph_1.80.0-1_arm64.deb ... 191s Unpacking r-bioc-graph (1.80.0-1) ... 192s Selecting previously unselected package r-bioc-rbgl. 192s Preparing to unpack .../299-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 192s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 192s Selecting previously unselected package r-bioc-organismdbi. 192s Preparing to unpack .../300-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 192s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 192s Selecting previously unselected package r-cran-broom. 192s Preparing to unpack .../301-r-cran-broom_1.0.5+dfsg-1_all.deb ... 192s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 192s Selecting previously unselected package r-cran-forcats. 192s Preparing to unpack .../302-r-cran-forcats_1.0.0-1_all.deb ... 192s Unpacking r-cran-forcats (1.0.0-1) ... 192s Selecting previously unselected package r-cran-clipr. 192s Preparing to unpack .../303-r-cran-clipr_0.8.0-1_all.deb ... 192s Unpacking r-cran-clipr (0.8.0-1) ... 192s Selecting previously unselected package r-cran-tzdb. 192s Preparing to unpack .../304-r-cran-tzdb_0.4.0-2_arm64.deb ... 192s Unpacking r-cran-tzdb (0.4.0-2) ... 192s Selecting previously unselected package r-cran-vroom. 192s Preparing to unpack .../305-r-cran-vroom_1.6.5-1_arm64.deb ... 192s Unpacking r-cran-vroom (1.6.5-1) ... 192s Selecting previously unselected package r-cran-readr. 192s Preparing to unpack .../306-r-cran-readr_2.1.5-1_arm64.deb ... 192s Unpacking r-cran-readr (2.1.5-1) ... 192s Selecting previously unselected package r-cran-haven. 192s Preparing to unpack .../307-r-cran-haven_2.5.4-1_arm64.deb ... 192s Unpacking r-cran-haven (2.5.4-1) ... 192s Selecting previously unselected package r-cran-labelled. 192s Preparing to unpack .../308-r-cran-labelled_2.12.0-2_all.deb ... 192s Unpacking r-cran-labelled (2.12.0-2) ... 192s Selecting previously unselected package r-cran-broom.helpers. 192s Preparing to unpack .../309-r-cran-broom.helpers_1.14.0-2_all.deb ... 192s Unpacking r-cran-broom.helpers (1.14.0-2) ... 192s Selecting previously unselected package r-cran-patchwork. 192s Preparing to unpack .../310-r-cran-patchwork_1.2.0-1_all.deb ... 192s Unpacking r-cran-patchwork (1.2.0-1) ... 192s Selecting previously unselected package r-cran-ggstats. 192s Preparing to unpack .../311-r-cran-ggstats_0.5.1-2_all.deb ... 192s Unpacking r-cran-ggstats (0.5.1-2) ... 192s Selecting previously unselected package r-cran-ggally. 192s Preparing to unpack .../312-r-cran-ggally_2.2.1-1_all.deb ... 192s Unpacking r-cran-ggally (2.2.1-1) ... 192s Selecting previously unselected package r-bioc-ggbio. 193s Preparing to unpack .../313-r-bioc-ggbio_1.50.0-1_all.deb ... 193s Unpacking r-bioc-ggbio (1.50.0-1) ... 193s Selecting previously unselected package r-cran-assertthat. 193s Preparing to unpack .../314-r-cran-assertthat_0.2.1-2build1_all.deb ... 193s Unpacking r-cran-assertthat (0.2.1-2build1) ... 193s Selecting previously unselected package r-bioc-structuralvariantannotation. 193s Preparing to unpack .../315-r-bioc-structuralvariantannotation_1.18.0+ds-1_all.deb ... 193s Unpacking r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 193s Selecting previously unselected package r-cran-brew. 193s Preparing to unpack .../316-r-cran-brew_1.0-10-1_all.deb ... 193s Unpacking r-cran-brew (1.0-10-1) ... 193s Selecting previously unselected package r-cran-brio. 193s Preparing to unpack .../317-r-cran-brio_1.1.4-1_arm64.deb ... 193s Unpacking r-cran-brio (1.1.4-1) ... 193s Selecting previously unselected package r-cran-ps. 193s Preparing to unpack .../318-r-cran-ps_1.7.6-1_arm64.deb ... 193s Unpacking r-cran-ps (1.7.6-1) ... 193s Selecting previously unselected package r-cran-processx. 193s Preparing to unpack .../319-r-cran-processx_3.8.3-1_arm64.deb ... 193s Unpacking r-cran-processx (3.8.3-1) ... 193s Selecting previously unselected package r-cran-callr. 193s Preparing to unpack .../320-r-cran-callr_3.7.3-2_all.deb ... 193s Unpacking r-cran-callr (3.7.3-2) ... 193s Selecting previously unselected package r-cran-rematch. 193s Preparing to unpack .../321-r-cran-rematch_2.0.0-1_all.deb ... 193s Unpacking r-cran-rematch (2.0.0-1) ... 193s Selecting previously unselected package r-cran-cellranger. 193s Preparing to unpack .../322-r-cran-cellranger_1.1.0-3_all.deb ... 193s Unpacking r-cran-cellranger (1.1.0-3) ... 193s Selecting previously unselected package r-cran-conflicted. 193s Preparing to unpack .../323-r-cran-conflicted_1.2.0-1.1_all.deb ... 193s Unpacking r-cran-conflicted (1.2.0-1.1) ... 193s Selecting previously unselected package r-cran-credentials. 193s Preparing to unpack .../324-r-cran-credentials_2.0.1-1_all.deb ... 193s Unpacking r-cran-credentials (2.0.1-1) ... 193s Selecting previously unselected package r-cran-desc. 193s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 193s Unpacking r-cran-desc (1.4.3-1) ... 193s Selecting previously unselected package r-cran-zip. 193s Preparing to unpack .../326-r-cran-zip_2.3.1-1_arm64.deb ... 193s Unpacking r-cran-zip (2.3.1-1) ... 193s Selecting previously unselected package r-cran-gert. 193s Preparing to unpack .../327-r-cran-gert_2.0.1+dfsg-1_arm64.deb ... 193s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 193s Selecting previously unselected package r-cran-gitcreds. 193s Preparing to unpack .../328-r-cran-gitcreds_0.1.2-1_all.deb ... 193s Unpacking r-cran-gitcreds (0.1.2-1) ... 193s Selecting previously unselected package r-cran-httr2. 193s Preparing to unpack .../329-r-cran-httr2_1.0.0-1_all.deb ... 193s Unpacking r-cran-httr2 (1.0.0-1) ... 193s Selecting previously unselected package r-cran-ini. 193s Preparing to unpack .../330-r-cran-ini_0.3.1-2build1_all.deb ... 193s Unpacking r-cran-ini (0.3.1-2build1) ... 193s Selecting previously unselected package r-cran-gh. 193s Preparing to unpack .../331-r-cran-gh_1.4.0-1_all.deb ... 193s Unpacking r-cran-gh (1.4.0-1) ... 193s Selecting previously unselected package r-cran-rprojroot. 194s Preparing to unpack .../332-r-cran-rprojroot_2.0.4-1_all.deb ... 194s Unpacking r-cran-rprojroot (2.0.4-1) ... 194s Selecting previously unselected package r-cran-whisker. 194s Preparing to unpack .../333-r-cran-whisker_0.4.1-1_all.deb ... 194s Unpacking r-cran-whisker (0.4.1-1) ... 194s Selecting previously unselected package r-cran-usethis. 194s Preparing to unpack .../334-r-cran-usethis_2.2.2-1_all.deb ... 194s Unpacking r-cran-usethis (2.2.2-1) ... 194s Selecting previously unselected package r-cran-miniui. 194s Preparing to unpack .../335-r-cran-miniui_0.1.1.1-3build1_all.deb ... 194s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 194s Selecting previously unselected package r-cran-pkgbuild. 194s Preparing to unpack .../336-r-cran-pkgbuild_1.4.3-1_all.deb ... 194s Unpacking r-cran-pkgbuild (1.4.3-1) ... 194s Selecting previously unselected package r-cran-downlit. 194s Preparing to unpack .../337-r-cran-downlit_0.4.3-1_all.deb ... 194s Unpacking r-cran-downlit (0.4.3-1) ... 194s Selecting previously unselected package r-cran-systemfonts. 194s Preparing to unpack .../338-r-cran-systemfonts_1.0.5-1_arm64.deb ... 194s Unpacking r-cran-systemfonts (1.0.5-1) ... 194s Selecting previously unselected package r-cran-textshaping. 194s Preparing to unpack .../339-r-cran-textshaping_0.3.7-2_arm64.deb ... 194s Unpacking r-cran-textshaping (0.3.7-2) ... 194s Selecting previously unselected package r-cran-ragg. 194s Preparing to unpack .../340-r-cran-ragg_1.2.7-1_arm64.deb ... 194s Unpacking r-cran-ragg (1.2.7-1) ... 194s Selecting previously unselected package libjs-bootswatch. 194s Preparing to unpack .../341-libjs-bootswatch_3.3.7+dfsg2-1.1_all.deb ... 194s Unpacking libjs-bootswatch (3.3.7+dfsg2-1.1) ... 194s Selecting previously unselected package r-cran-pkgdown. 194s Preparing to unpack .../342-r-cran-pkgdown_2.0.7-2_all.deb ... 194s Unpacking r-cran-pkgdown (2.0.7-2) ... 194s Selecting previously unselected package r-cran-pkgload. 194s Preparing to unpack .../343-r-cran-pkgload_1.3.4-1_all.deb ... 194s Unpacking r-cran-pkgload (1.3.4-1) ... 194s Selecting previously unselected package r-cran-profvis. 195s Preparing to unpack .../344-r-cran-profvis_0.3.8+dfsg-1_arm64.deb ... 195s Unpacking r-cran-profvis (0.3.8+dfsg-1) ... 195s Selecting previously unselected package r-cran-sessioninfo. 195s Preparing to unpack .../345-r-cran-sessioninfo_1.2.2-1_all.deb ... 195s Unpacking r-cran-sessioninfo (1.2.2-1) ... 195s Selecting previously unselected package r-cran-xopen. 195s Preparing to unpack .../346-r-cran-xopen_1.0.0+dfsg-1_all.deb ... 195s Unpacking r-cran-xopen (1.0.0+dfsg-1) ... 195s Selecting previously unselected package r-cran-rcmdcheck. 195s Preparing to unpack .../347-r-cran-rcmdcheck_1.4.0-2_all.deb ... 195s Unpacking r-cran-rcmdcheck (1.4.0-2) ... 195s Selecting previously unselected package r-cran-remotes. 195s Preparing to unpack .../348-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ... 195s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ... 195s Selecting previously unselected package r-cran-roxygen2. 195s Preparing to unpack .../349-r-cran-roxygen2_7.3.1-1_arm64.deb ... 195s Unpacking r-cran-roxygen2 (7.3.1-1) ... 195s Selecting previously unselected package r-cran-rversions. 196s Preparing to unpack .../350-r-cran-rversions_2.1.2-1_all.deb ... 196s Unpacking r-cran-rversions (2.1.2-1) ... 196s Selecting previously unselected package r-cran-praise. 196s Preparing to unpack .../351-r-cran-praise_1.0.0-4build1_all.deb ... 196s Unpacking r-cran-praise (1.0.0-4build1) ... 196s Selecting previously unselected package r-cran-diffobj. 196s Preparing to unpack .../352-r-cran-diffobj_0.3.5-1_arm64.deb ... 196s Unpacking r-cran-diffobj (0.3.5-1) ... 196s Selecting previously unselected package r-cran-rematch2. 196s Preparing to unpack .../353-r-cran-rematch2_2.1.2-2build1_all.deb ... 196s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 196s Selecting previously unselected package r-cran-waldo. 196s Preparing to unpack .../354-r-cran-waldo_0.5.2-1build1_all.deb ... 196s Unpacking r-cran-waldo (0.5.2-1build1) ... 196s Selecting previously unselected package r-cran-testthat. 196s Preparing to unpack .../355-r-cran-testthat_3.2.1-1_arm64.deb ... 196s Unpacking r-cran-testthat (3.2.1-1) ... 196s Selecting previously unselected package r-cran-urlchecker. 196s Preparing to unpack .../356-r-cran-urlchecker_1.0.1-2_all.deb ... 196s Unpacking r-cran-urlchecker (1.0.1-2) ... 196s Selecting previously unselected package r-cran-devtools. 196s Preparing to unpack .../357-r-cran-devtools_2.4.5-1_all.deb ... 196s Unpacking r-cran-devtools (2.4.5-1) ... 196s Selecting previously unselected package r-cran-dtplyr. 196s Preparing to unpack .../358-r-cran-dtplyr_1.3.1-1_all.deb ... 196s Unpacking r-cran-dtplyr (1.3.1-1) ... 196s Selecting previously unselected package r-cran-gargle. 196s Preparing to unpack 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r-cran-foreign (0.8.86-1) ... 201s Setting up r-cran-bit (4.0.5-1) ... 201s Setting up r-cran-xtable (1:1.8-4-2) ... 201s Setting up r-cran-cli (3.6.2-1) ... 201s Setting up gfortran (4:13.2.0-7ubuntu1) ... 201s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 201s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 201s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 201s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 201s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 201s Setting up r-cran-bitops (1.0-7-1) ... 201s Setting up r-cran-rprojroot (2.0.4-1) ... 201s Setting up r-cran-bit64 (4.0.5-1) ... 201s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 201s Setting up r-cran-dichromat (1:2.0-0.1-1) ... 201s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 201s Setting up r-cran-deldir (2.0-4-1) ... 201s Setting up r-cran-askpass (1.2.0-1) ... 201s Setting up r-cran-fastmap (1.1.1-1) ... 201s Setting up r-cran-png (0.1-8-1) ... 201s Setting up r-bioc-biobase (2.62.0-1) ... 201s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 201s Setting up r-cran-rstudioapi (0.15.0-1) ... 201s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 201s Setting up r-cran-utf8 (1.2.4-1) ... 201s Setting up r-cran-brew (1.0-10-1) ... 201s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 201s Setting up r-cran-stringi (1.8.3-1) ... 201s Setting up r-cran-gitcreds (0.1.2-1) ... 201s Setting up r-cran-cpp11 (0.4.7-1) ... 201s Setting up r-cran-plyr (1.8.9-1) ... 201s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 201s Setting up r-cran-ini (0.3.1-2build1) ... 201s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 201s Setting up r-cran-isoband (0.2.7-1) ... 201s Setting up r-cran-futile.logger (1.4.3-4build1) ... 201s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 201s Setting up r-cran-later (1.3.2+dfsg-1) ... 201s Setting up r-cran-matrix (1.6-5-1) ... 201s Setting up r-cran-tinytex (0.49-1) ... 201s Setting up r-cran-knitr (1.45+dfsg-1) ... 201s Setting up r-cran-mgcv (1.9-1-1) ... 201s Setting up g++ (4:13.2.0-7ubuntu1) ... 201s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 201s Setting up r-cran-cachem (1.0.8-1) ... 201s Setting up build-essential (12.10ubuntu1) ... 201s Setting up r-bioc-iranges (2.36.0-1) ... 201s Setting up r-cran-rjson (0.2.21-1) ... 201s Setting up r-cran-tzdb (0.4.0-2) ... 201s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 201s Setting up r-cran-sessioninfo (1.2.2-1) ... 201s Setting up r-cran-restfulr (0.0.15-1) ... 201s Setting up r-cran-vctrs (0.6.5-1) ... 201s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 201s Setting up r-bioc-graph (1.80.0-1) ... 201s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 201s Setting up r-cran-ellipsis (0.3.2-2) ... 201s Setting up r-bioc-rbgl (1.78.0+dfsg-1) ... 201s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 201s Setting up r-base-dev (4.3.3-2build1) ... 201s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 201s Setting up r-cran-stringr (1.5.1-1) ... 201s Setting up r-bioc-biocparallel (1.36.0-1) ... 201s Setting up r-cran-callr (3.7.3-2) ... 201s Setting up r-cran-selectr (0.4-2-2build1) ... 201s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 201s Setting up r-cran-desc (1.4.3-1) ... 201s Setting up r-cran-xml2 (1.3.6-1) ... 201s Setting up r-cran-munsell (0.5.0-2build1) ... 201s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 201s Setting up r-cran-survival (3.5-8-1) ... 201s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 201s Setting up r-cran-forcats (1.0.0-1) ... 201s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 201s Setting up r-cran-reshape2 (1.4.4-2build1) ... 201s Setting up r-cran-interp (1.1-6-1) ... 201s Setting up r-cran-httr2 (1.0.0-1) ... 201s Setting up r-cran-systemfonts (1.0.5-1) ... 201s Setting up r-cran-ids (1.0.1-2) ... 201s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 201s Setting up r-cran-timechange (0.3.0-1) ... 201s Setting up r-cran-httr (1.4.7+dfsg-1) ... 201s Setting up r-cran-gridextra (2.3-3build1) ... 202s Setting up r-cran-hms (1.1.3-1) ... 202s Setting up r-cran-scales (1.3.0-1) ... 202s Setting up r-cran-memoise (2.0.1-1) ... 202s Setting up r-cran-promises (1.2.1+dfsg-1) ... 202s Setting up r-cran-purrr (1.0.2-1) ... 202s Setting up r-cran-credentials (2.0.1-1) ... 202s Setting up r-cran-blob (1.2.4-1) ... 202s Setting up r-cran-htmltools (0.5.7-1) ... 202s Setting up r-cran-urlchecker (1.0.1-2) ... 202s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 202s Setting up r-bioc-xvector (0.42.0-1) ... 202s Setting up r-cran-pkgbuild (1.4.3-1) ... 202s Setting up r-cran-sass (0.4.8+dfsg-1) ... 202s Setting up r-cran-dplyr (1.1.4-1) ... 202s Setting up r-cran-rsqlite (2.3.4-1) ... 202s Setting up r-cran-gh (1.4.0-1) ... 202s Setting up r-cran-progress (1.2.3-1) ... 202s Setting up r-cran-lubridate (1.9.3+dfsg-1) ... 202s Setting up r-cran-pkgload (1.3.4-1) ... 202s Setting up r-cran-gargle (1.5.2-1) ... 202s Setting up r-cran-rversions (2.1.2-1) ... 202s Setting up r-cran-vroom (1.6.5-1) ... 202s Setting up r-cran-conflicted (1.2.0-1.1) ... 202s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 202s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 202s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 202s Setting up r-cran-cellranger (1.1.0-3) ... 202s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 202s Setting up r-cran-rematch2 (2.1.2-2build1) ... 202s Setting up r-cran-rpart (4.1.23-1) ... 202s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 202s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 202s Setting up r-cran-fontawesome (0.5.2-1) ... 202s Setting up r-cran-gert (2.0.1+dfsg-1) ... 202s Setting up r-cran-latticeextra (0.6-30-1) ... 202s Setting up r-cran-downlit (0.4.3-1) ... 202s Setting up r-cran-textshaping (0.3.7-2) ... 202s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 202s Setting up r-cran-viridis (0.6.5-1) ... 202s Setting up r-cran-rvest (1.0.3-1) ... 202s Setting up r-cran-dtplyr (1.3.1-1) ... 202s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 202s Setting up r-cran-ragg (1.2.7-1) ... 202s Setting up r-cran-readr (2.1.5-1) ... 202s Setting up r-cran-waldo (0.5.2-1build1) ... 202s Setting up r-cran-tidyr (1.3.1-1) ... 202s Setting up r-cran-rcmdcheck (1.4.0-2) ... 202s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 202s Setting up r-cran-googledrive (2.1.1-1) ... 202s Setting up r-cran-roxygen2 (7.3.1-1) ... 202s Setting up r-cran-googlesheets4 (1.1.1-1) ... 202s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 202s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 202s Setting up r-cran-patchwork (1.2.0-1) ... 202s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 202s Setting up r-cran-readxl (1.4.3-1) ... 202s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 202s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 202s Setting up r-cran-haven (2.5.4-1) ... 202s Setting up r-bioc-annotationdbi (1.64.1-1) ... 202s Setting up r-cran-usethis (2.2.2-1) ... 202s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 202s Setting up r-cran-testthat (3.2.1-1) ... 202s Setting up r-cran-miniui (0.1.1.1-3build1) ... 202s Setting up r-cran-broom (1.0.5+dfsg-1) ... 202s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 202s Setting up r-cran-pkgdown (2.0.7-2) ... 202s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 202s Setting up r-cran-labelled (2.12.0-2) ... 202s Setting up r-bioc-genomicalignments (1.38.2-1) ... 202s Setting up r-cran-reprex (2.1.0-1) ... 202s Setting up r-bioc-rtracklayer (1.62.0-1) ... 202s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 202s Setting up r-cran-modelr (0.1.11-1) ... 202s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 202s Setting up r-cran-profvis (0.3.8+dfsg-1) ... 202s Setting up r-cran-broom.helpers (1.14.0-2) ... 202s Setting up r-bioc-bsgenome (1.70.2-1) ... 202s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 202s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 202s Setting up r-cran-ggstats (0.5.1-2) ... 202s Setting up r-cran-devtools (2.4.5-1) ... 202s Setting up r-bioc-variantannotation (1.48.1-1) ... 202s Setting up r-cran-tidyverse (2.0.0+dfsg-1) ... 202s Setting up r-cran-ggally (2.2.1-1) ... 202s Setting up r-cran-htmltable (2.4.2-1) ... 202s Setting up r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 202s Setting up r-cran-hmisc (5.1-1-1) ... 202s Setting up r-bioc-biovizbase (1.50.0-1) ... 202s Setting up r-bioc-ggbio (1.50.0-1) ... 202s Setting up autopkgtest-satdep (0) ... 202s Processing triggers for man-db (2.12.0-3) ... 202s Processing triggers for install-info (7.1-3) ... 203s Processing triggers for libc-bin (2.39-0ubuntu2) ... 220s (Reading database ... 124895 files and directories currently installed.) 220s Removing autopkgtest-satdep (0) ... 221s autopkgtest [17:49:16]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 221s autopkgtest [17:49:16]: test pkg-r-autopkgtest: [----------------------- 221s Test: Try to load the R library StructuralVariantAnnotation 222s 222s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 222s Copyright (C) 2024 The R Foundation for Statistical Computing 222s Platform: aarch64-unknown-linux-gnu (64-bit) 222s 222s R is free software and comes with ABSOLUTELY NO WARRANTY. 222s You are welcome to redistribute it under certain conditions. 222s Type 'license()' or 'licence()' for distribution details. 222s 222s R is a collaborative project with many contributors. 222s Type 'contributors()' for more information and 222s 'citation()' on how to cite R or R packages in publications. 222s 222s Type 'demo()' for some demos, 'help()' for on-line help, or 222s 'help.start()' for an HTML browser interface to help. 222s Type 'q()' to quit R. 222s 222s > library('StructuralVariantAnnotation') 222s Loading required package: GenomicRanges 222s Loading required package: stats4 223s Loading required package: BiocGenerics 223s 223s Attaching package: ‘BiocGenerics’ 223s 223s The following objects are masked from ‘package:stats’: 223s 223s IQR, mad, sd, var, xtabs 223s 223s The following objects are masked from ‘package:base’: 223s 223s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 223s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 223s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 223s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 223s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 223s table, tapply, union, unique, unsplit, which.max, which.min 223s 223s Loading required package: S4Vectors 223s 223s Attaching package: ‘S4Vectors’ 223s 223s The following object is masked from ‘package:utils’: 223s 223s findMatches 223s 223s The following objects are masked from ‘package:base’: 223s 223s expand.grid, I, unname 223s 223s Loading required package: IRanges 224s Loading required package: GenomeInfoDb 225s Loading required package: rtracklayer 232s Loading required package: VariantAnnotation 232s Loading required package: MatrixGenerics 232s Loading required package: matrixStats 232s 232s Attaching package: ‘MatrixGenerics’ 232s 232s The following objects are masked from ‘package:matrixStats’: 232s 232s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 232s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 232s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 232s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 232s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 232s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 232s colWeightedMeans, colWeightedMedians, colWeightedSds, 232s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 232s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 232s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 232s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 232s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 232s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 232s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 232s rowWeightedSds, rowWeightedVars 232s 232s Loading required package: SummarizedExperiment 232s Loading required package: Biobase 232s Welcome to Bioconductor 232s 232s Vignettes contain introductory material; view with 232s 'browseVignettes()'. To cite Bioconductor, see 232s 'citation("Biobase")', and for packages 'citation("pkgname")'. 232s 232s 232s Attaching package: ‘Biobase’ 232s 232s The following object is masked from ‘package:MatrixGenerics’: 232s 232s rowMedians 232s 232s The following objects are masked from ‘package:matrixStats’: 232s 232s anyMissing, rowMedians 232s 232s Loading required package: Rsamtools 232s Loading required package: Biostrings 232s Loading required package: XVector 232s 232s Attaching package: ‘Biostrings’ 232s 232s The following object is masked from ‘package:base’: 232s 232s strsplit 232s 235s 235s Attaching package: ‘VariantAnnotation’ 235s 235s The following object is masked from ‘package:base’: 235s 235s tabulate 235s 235s > 235s > 238s Other tests are currently unsupported! 238s They will be progressively added. 238s autopkgtest [17:49:33]: test pkg-r-autopkgtest: -----------------------] 239s pkg-r-autopkgtest PASS 239s autopkgtest [17:49:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 239s autopkgtest [17:49:34]: @@@@@@@@@@@@@@@@@@@@ summary 239s pkg-r-autopkgtest PASS 250s Creating nova instance adt-noble-arm64-r-bioc-structuralvariantannotation-20240316-174534-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...