0s autopkgtest [13:50:55]: starting date and time: 2024-03-16 13:50:55+0000 0s autopkgtest [13:50:55]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:50:55]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.vpq9you5/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-structuralvariantannotation --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-structuralvariantannotation-20240316-135055-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 79s autopkgtest [13:52:14]: testbed dpkg architecture: arm64 80s autopkgtest [13:52:15]: testbed apt version: 2.7.12 80s autopkgtest [13:52:15]: @@@@@@@@@@@@@@@@@@@@ test bed setup 80s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 80s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 81s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 81s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 81s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 81s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 81s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 81s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 81s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 81s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 81s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 81s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 81s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 83s Fetched 9092 kB in 2s (5398 kB/s) 83s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 87s Calculating upgrade... 88s The following packages will be REMOVED: 88s libssl3 88s The following NEW packages will be installed: 88s libssl3t64 88s The following packages have been kept back: 88s curl 88s The following packages will be upgraded: 88s openssl ubuntu-minimal ubuntu-standard 88s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 88s Need to get 2775 kB of archives. 88s After this operation, 72.7 kB of additional disk space will be used. 88s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 88s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 88s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 89s Fetched 2775 kB in 1s (3819 kB/s) 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 89s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 89s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 89s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 89s wget depends on libssl3 (>= 3.0.0). 89s u-boot-tools depends on libssl3 (>= 3.0.0). 89s tnftp depends on libssl3 (>= 3.0.0). 89s tcpdump depends on libssl3 (>= 3.0.0). 89s systemd-resolved depends on libssl3 (>= 3.0.0). 89s systemd depends on libssl3 (>= 3.0.0). 89s sudo depends on libssl3 (>= 3.0.0). 89s sbsigntool depends on libssl3 (>= 3.0.0). 89s rsync depends on libssl3 (>= 3.0.0). 89s python3-cryptography depends on libssl3 (>= 3.0.0). 89s openssh-server depends on libssl3 (>= 3.0.10). 89s openssh-client depends on libssl3 (>= 3.0.10). 89s mtd-utils depends on libssl3 (>= 3.0.0). 89s mokutil depends on libssl3 (>= 3.0.0). 89s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 89s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 89s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 89s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 89s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 89s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 89s libnvme1 depends on libssl3 (>= 3.0.0). 89s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 89s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 89s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 89s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 89s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 89s kmod depends on libssl3 (>= 3.0.0). 89s dhcpcd-base depends on libssl3 (>= 3.0.0). 89s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 89s 89s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 89s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 90s Selecting previously unselected package libssl3t64:arm64. 90s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 90s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 90s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 90s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 90s Unpacking ubuntu-minimal (1.536) over (1.535) ... 90s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 90s Unpacking ubuntu-standard (1.536) over (1.535) ... 90s Setting up ubuntu-minimal (1.536) ... 90s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 90s Setting up ubuntu-standard (1.536) ... 90s Setting up openssl (3.0.13-0ubuntu1) ... 90s Processing triggers for man-db (2.12.0-3) ... 90s Processing triggers for libc-bin (2.39-0ubuntu2) ... 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 92s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 92s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 92s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 92s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 93s Reading package lists... 93s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s The following packages have been kept back: 95s curl 95s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 98s autopkgtest [13:52:33]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 99s autopkgtest [13:52:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-structuralvariantannotation 101s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (dsc) [2600 B] 101s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (tar) [262 kB] 101s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-structuralvariantannotation 1.18.0+ds-1 (diff) [6836 B] 101s gpgv: Signature made Fri Dec 1 15:57:35 2023 UTC 101s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 101s gpgv: issuer "tillea@rki.de" 101s gpgv: Can't check signature: No public key 101s dpkg-source: warning: cannot verify inline signature for ./r-bioc-structuralvariantannotation_1.18.0+ds-1.dsc: no acceptable signature found 101s autopkgtest [13:52:36]: testing package r-bioc-structuralvariantannotation version 1.18.0+ds-1 101s autopkgtest [13:52:36]: build not needed 102s autopkgtest [13:52:37]: test pkg-r-autopkgtest: preparing testbed 107s Reading package lists... 107s Building dependency tree... 107s Reading state information... 108s Starting pkgProblemResolver with broken count: 0 108s Starting 2 pkgProblemResolver with broken count: 0 108s Done 109s The following additional packages will be installed: 109s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 109s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 109s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 109s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 109s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 109s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 109s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 109s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 109s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 109s libgfortran-13-dev libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 109s libharfbuzz0b libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 109s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 109s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 109s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 109s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 109s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 109s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 109s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 109s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 109s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 109s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 109s libsm6 libssh2-1 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 109s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 109s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev node-bootstrap-sass 109s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 109s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 109s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 109s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 109s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 109s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 109s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 109s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 109s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 109s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 109s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 109s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 109s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 109s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 109s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 109s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 109s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 109s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 109s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 109s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 109s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 109s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 109s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 109s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 109s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 109s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 109s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 109s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 109s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 109s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 109s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 109s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 109s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 109s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 109s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 109s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 109s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 109s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 109s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 109s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 109s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 109s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 109s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 109s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 109s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 109s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 109s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 109s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 109s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 109s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 109s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 109s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 109s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 109s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 109s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 109s zlib1g-dev 109s Suggested packages: 109s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 109s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 109s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 109s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 109s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 109s libboost-context1.83-dev libboost-contract1.83-dev 109s libboost-coroutine1.83-dev libboost-date-time1.83-dev 109s libboost-exception1.83-dev libboost-fiber1.83-dev 109s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 109s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 109s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 109s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 109s libboost-numpy1.83-dev libboost-program-options1.83-dev 109s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 109s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 109s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 109s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 109s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 109s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 109s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 109s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 109s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 109s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 109s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 109s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 109s texlive-extra-utils texinfo r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db 109s r-bioc-biocstyle r-bioc-all r-bioc-affy r-bioc-deseq2 r-bioc-annotate 109s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 109s r-cran-batchtools r-cran-mockery r-cran-webmockr r-bioc-hdf5array 109s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-gviz 109s r-bioc-annotationhub r-cran-r.utils r-bioc-edger r-cran-markdown 109s r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats r-bioc-limma 109s r-bioc-rhdf5 r-bioc-snpstats r-cran-covr r-cran-ff r-cran-aer r-cran-bbmle 109s r-cran-boot r-cran-car r-cran-cardata r-cran-caret r-cran-cmprsk r-cran-coda 109s r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam r-cran-gee r-cran-geepack 109s r-cran-glmnet r-cran-gmm r-cran-irlba r-cran-ks r-cran-lavaan r-cran-leaps 109s r-cran-lme4 r-cran-lmtest r-cran-lsmeans r-cran-maps r-cran-mclust 109s r-cran-metafor r-cran-modeldata r-cran-multcomp r-cran-network 109s r-cran-ordinal r-cran-plm r-cran-psych r-cran-quantreg r-cran-robust 109s r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-sp r-cran-spdep 109s r-cran-spatialreg r-cran-spelling r-cran-survey r-cran-systemfit 109s r-cran-tseries r-cran-zoo r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm 109s r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip r-cran-dt 109s r-cran-lintr r-cran-pingr r-cran-bench r-cran-scatterplot3d r-cran-magick 109s r-cran-sf r-cran-getopt r-cran-formattable r-cran-nanotime 109s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-rsconnect 109s r-cran-svglite r-cran-inline r-cran-reticulate r-cran-rmpi r-cran-rlecuyer 109s r-cran-here r-cran-mockr 109s Recommended packages: 109s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 109s r-recommended r-doc-html r-bioc-biocversion r-cran-covr r-cran-brms 109s r-cran-broom.mixed r-cran-cmprsk r-cran-effects r-cran-emmeans r-cran-gam 109s r-cran-gee r-cran-geepack r-cran-ggeffects r-cran-glmmtmb r-cran-lavaan 109s r-cran-lme4 r-cran-mice r-cran-ordinal r-cran-parameters r-cran-plm 109s r-cran-pscl r-cran-rstanarm r-cran-spelling r-cran-survey r-cran-vgam 109s r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-fastmatch 109s r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr 109s r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo 109s r-cran-rpostgresql r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-testit 109s r-cran-sodium r-cran-geosphere r-cran-ggforce r-cran-igraph 109s r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network r-cran-sna 109s r-cran-crosstalk r-cran-vdiffr r-cran-hexbin r-cran-multcomp r-cran-quantreg 109s r-cran-sf r-cran-svglite r-cran-reshape r-cran-mockr r-cran-cairo 109s r-cran-markdown r-cran-docopt r-cran-webfakes r-cran-r.rsp r-cran-gridsvg 109s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 109s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-r.devices 109s r-cran-gridgraphics r-cran-mathjaxr r-cran-doparallel r-cran-foreach 109s r-cran-iterators r-cran-itertools r-cran-future r-cran-pingr r-cran-git2r 109s r-cran-runit r-cran-dygraphs r-cran-rsconnect r-cran-r.methodss3 r-cran-r.oo 109s r-cran-dbitest r-cran-formattable r-cran-zeallot r-cran-renv 109s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 109s x11-xserver-utils 109s The following packages will be REMOVED: 109s libcurl4 libpsl5 109s The following NEW packages will be installed: 109s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 109s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 109s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 109s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 109s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 109s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 109s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 109s libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 109s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 109s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 109s libgfortran5 libgit2-1.7 libgomp1 libgraphite2-3 libharfbuzz0b 109s libhttp-parser2.9 libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 109s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 109s libjs-bootstrap libjs-bootstrap4 libjs-bootswatch libjs-d3 libjs-es5-shim 109s libjs-highlight.js libjs-jquery libjs-jquery-datatables 109s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 109s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 109s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 109s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 109s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 109s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 109s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 109s libsm6 libssh2-1 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 109s libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 109s libxft2 libxrender1 libxss1 libxt6 linux-libc-dev node-bootstrap-sass 109s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 109s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 109s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 109s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 109s r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase r-bioc-bsgenome 109s r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 109s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 109s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 109s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 109s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 109s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 109s r-bioc-structuralvariantannotation r-bioc-summarizedexperiment 109s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 109s r-cran-acepack r-cran-askpass r-cran-assertthat r-cran-backports 109s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 109s r-cran-bitops r-cran-blob r-cran-brew r-cran-brio r-cran-broom 109s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 109s r-cran-cellranger r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr 109s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 109s r-cran-conflicted r-cran-cpp11 r-cran-crayon r-cran-credentials r-cran-curl 109s r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-deldir r-cran-desc 109s r-cran-devtools r-cran-dichromat r-cran-diffobj r-cran-digest r-cran-downlit 109s r-cran-dplyr r-cran-dtplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 109s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 109s r-cran-forcats r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs 109s r-cran-futile.logger r-cran-futile.options r-cran-gargle r-cran-generics 109s r-cran-gert r-cran-ggally r-cran-ggplot2 r-cran-ggstats r-cran-gh 109s r-cran-gitcreds r-cran-glue r-cran-googledrive r-cran-googlesheets4 109s r-cran-gridextra r-cran-gtable r-cran-haven r-cran-highr r-cran-hmisc 109s r-cran-hms r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets 109s r-cran-httpuv r-cran-httr r-cran-httr2 r-cran-ids r-cran-ini r-cran-interp 109s r-cran-isoband r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr 109s r-cran-labeling r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 109s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 109s r-cran-lubridate r-cran-magrittr r-cran-mass r-cran-matrix 109s r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-miniui 109s r-cran-modelr r-cran-munsell r-cran-nlme r-cran-nnet r-cran-openssl 109s r-cran-patchwork r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 109s r-cran-pkgdown r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 109s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-profvis 109s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-ragg 109s r-cran-rappdirs r-cran-rcmdcheck r-cran-rcolorbrewer r-cran-rcpp 109s r-cran-rcppeigen r-cran-rcurl r-cran-readr r-cran-readxl r-cran-rematch 109s r-cran-rematch2 r-cran-remotes r-cran-reprex r-cran-reshape2 r-cran-restfulr 109s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-roxygen2 r-cran-rpart 109s r-cran-rprojroot r-cran-rsqlite r-cran-rstudioapi r-cran-rversions 109s r-cran-rvest r-cran-sass r-cran-scales r-cran-selectr r-cran-sessioninfo 109s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 109s r-cran-survival r-cran-sys r-cran-systemfonts r-cran-testthat 109s r-cran-textshaping r-cran-tibble r-cran-tidyr r-cran-tidyselect 109s r-cran-tidyverse r-cran-timechange r-cran-tinytex r-cran-tzdb 109s r-cran-urlchecker r-cran-usethis r-cran-utf8 r-cran-uuid r-cran-vctrs 109s r-cran-viridis r-cran-viridislite r-cran-vroom r-cran-waldo r-cran-whisker 109s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xopen r-cran-xtable 109s r-cran-yaml r-cran-zip rpcsvc-proto unzip x11-common xdg-utils zip 109s zlib1g-dev 109s The following packages will be upgraded: 109s curl 109s 1 upgraded, 374 newly installed, 2 to remove and 0 not upgraded. 109s Need to get 390 MB/390 MB of archives. 109s After this operation, 1220 MB of additional disk space will be used. 109s Get:1 /tmp/autopkgtest.HRcx0R/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [820 B] 109s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 109s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 109s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 110s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 110s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 110s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 110s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 110s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 110s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 110s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 110s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 110s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 110s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 110s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 110s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 110s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 110s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 110s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 110s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 110s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 110s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 111s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 111s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 111s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 111s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 111s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 111s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 111s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 111s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 111s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 111s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 111s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 111s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 111s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 111s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 111s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 111s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 111s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 111s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 112s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 112s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 112s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 112s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 112s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 112s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 112s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 112s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 112s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 112s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 112s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 112s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 112s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 112s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 112s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 112s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 112s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 112s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 112s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 112s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 112s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 112s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 112s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 112s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 112s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libhttp-parser2.9 arm64 2.9.4-6 [21.4 kB] 112s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libssh2-1 arm64 1.11.0-4 [140 kB] 112s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libgit2-1.7 arm64 1.7.2+ds-1ubuntu1 [527 kB] 112s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 112s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 112s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 112s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 112s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 113s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 113s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 113s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 113s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 113s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 113s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 113s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 113s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 113s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 113s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 113s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 113s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 113s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 113s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 113s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 113s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 113s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 113s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 113s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 113s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 113s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 113s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 113s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 113s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 113s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 113s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 113s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 113s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 113s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 113s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 113s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 113s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 115s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 115s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 115s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 115s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 115s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 115s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 115s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 115s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 115s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 115s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 115s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 115s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 115s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 115s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 115s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 115s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 115s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 115s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 115s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 115s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 115s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 115s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 115s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 115s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 115s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 115s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 115s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 115s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 115s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 116s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 116s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 116s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 116s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 116s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 116s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 116s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 116s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 116s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 116s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 116s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 116s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 116s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 116s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 116s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 116s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 116s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 116s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 116s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 116s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 116s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 116s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 116s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 116s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 116s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 116s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 116s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 116s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 116s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 116s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 116s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 116s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 116s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 116s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 117s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 117s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 117s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 117s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 117s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 117s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 118s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 118s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 118s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 118s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 118s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 118s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 118s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 118s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 118s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 118s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 118s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 118s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 118s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 118s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 118s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 118s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 118s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 118s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 118s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 118s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 118s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 119s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 119s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 119s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 119s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 119s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 119s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 119s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 119s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 119s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 119s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 119s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 119s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 119s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 119s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 119s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 119s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 119s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 119s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 119s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 119s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 119s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 119s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 119s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 119s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 119s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 120s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 120s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 120s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 120s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 120s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 120s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 120s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 120s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 120s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 120s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 120s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 120s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 120s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 120s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 120s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 120s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 120s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 120s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 120s Get:240 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 120s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 121s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 121s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 121s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 121s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 121s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 121s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 121s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 121s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 121s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 121s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 121s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 121s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 121s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 121s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 121s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 121s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 121s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 121s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 121s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 121s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 121s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 121s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 121s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 121s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 121s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 121s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 121s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 121s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 121s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 121s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 121s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 121s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 121s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 121s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 121s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 121s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 121s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 122s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 122s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 122s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 122s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 122s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 122s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 122s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 122s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 122s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 122s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 122s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 122s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 122s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 122s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 122s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 122s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 122s Get:295 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-variantannotation arm64 1.48.1-1build1 [3531 kB] 122s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 123s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 123s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 123s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 123s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 123s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 123s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 123s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 123s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 123s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 123s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 123s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 123s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 123s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 123s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 123s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 123s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 123s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 123s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 124s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 124s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 124s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 124s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] 124s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-structuralvariantannotation all 1.18.0+ds-1 [413 kB] 124s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 124s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 124s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 124s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 124s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 124s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch all 2.0.0-1 [18.3 kB] 124s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cellranger all 1.1.0-3 [102 kB] 124s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-conflicted all 1.2.0-1.1 [60.8 kB] 124s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-credentials all 2.0.1-1 [207 kB] 124s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 124s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-zip arm64 2.3.1-1 [125 kB] 124s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gert arm64 2.0.1+dfsg-1 [234 kB] 124s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gitcreds all 0.1.2-1 [93.5 kB] 124s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr2 all 1.0.0-1 [553 kB] 124s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ini all 0.3.1-2build1 [15.8 kB] 124s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gh all 1.4.0-1 [108 kB] 124s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 124s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-whisker all 0.4.1-1 [62.7 kB] 124s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-usethis all 2.2.2-1 [882 kB] 124s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 124s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 124s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-downlit all 0.4.3-1 [125 kB] 124s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 124s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-textshaping arm64 0.3.7-2 [91.8 kB] 124s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ragg arm64 1.2.7-1 [385 kB] 124s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootswatch all 3.3.7+dfsg2-1.1 [133 kB] 124s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgdown all 2.0.7-2 [837 kB] 124s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 124s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-profvis arm64 0.3.8+dfsg-1 [105 kB] 124s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sessioninfo all 1.2.2-1 [268 kB] 124s Get:350 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xopen all 1.0.0+dfsg-1 [18.9 kB] 124s Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcmdcheck all 1.4.0-2 [206 kB] 124s Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-remotes all 2.4.2.1+dfsg-2 [411 kB] 124s Get:353 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-roxygen2 arm64 7.3.1-1 [710 kB] 124s Get:354 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rversions all 2.1.2-1 [59.4 kB] 124s Get:355 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 124s Get:356 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 124s Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 124s Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 124s Get:359 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 124s Get:360 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-urlchecker all 1.0.1-2 [34.0 kB] 124s Get:361 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-devtools all 2.4.5-1 [676 kB] 124s Get:362 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dtplyr all 1.3.1-1 [364 kB] 124s Get:363 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gargle all 1.5.2-1 [737 kB] 124s Get:364 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-uuid arm64 1.2-0-1 [47.9 kB] 124s Get:365 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-googledrive all 2.1.1-1 [1224 kB] 124s Get:366 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ids all 1.0.1-2 [124 kB] 124s Get:367 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-googlesheets4 all 1.1.1-1 [520 kB] 124s Get:368 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-timechange arm64 0.3.0-1 [172 kB] 124s Get:369 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lubridate arm64 1.9.3+dfsg-1 [1010 kB] 124s Get:370 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-modelr all 0.1.11-1 [195 kB] 124s Get:371 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readxl arm64 1.4.3-1 [726 kB] 124s Get:372 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reprex all 2.1.0-1 [465 kB] 124s Get:373 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-selectr all 0.4-2-2build1 [416 kB] 124s Get:374 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rvest all 1.0.3-1 [208 kB] 124s Get:375 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyverse all 2.0.0+dfsg-1 [84.5 kB] 126s Preconfiguring packages ... 126s Fetched 390 MB in 16s (24.9 MB/s) 126s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 126s wget depends on libpsl5 (>= 0.16.0). 126s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 126s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 126s 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 127s Removing libpsl5:arm64 (0.21.2-1build1) ... 127s Selecting previously unselected package libpsl5t64:arm64. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 127s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 127s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 127s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 127s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 127s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 127s Selecting previously unselected package libcurl4t64:arm64. 127s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 127s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 127s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 127s Selecting previously unselected package libc-dev-bin. 127s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 127s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 127s Selecting previously unselected package linux-libc-dev:arm64. 127s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 127s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 127s Selecting previously unselected package libcrypt-dev:arm64. 127s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 127s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 127s Selecting previously unselected package libtirpc-dev:arm64. 127s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 127s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 127s Selecting previously unselected package libnsl-dev:arm64. 127s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 127s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 127s Selecting previously unselected package rpcsvc-proto. 127s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 127s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 127s Selecting previously unselected package libc6-dev:arm64. 127s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 127s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 128s Selecting previously unselected package libisl23:arm64. 128s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 128s Unpacking libisl23:arm64 (0.26-3) ... 128s Selecting previously unselected package libmpc3:arm64. 128s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 128s Unpacking libmpc3:arm64 (1.3.1-1) ... 128s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 128s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 128s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package cpp-13. 128s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 128s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 128s Selecting previously unselected package cpp-aarch64-linux-gnu. 128s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 128s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package cpp. 128s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 128s Unpacking cpp (4:13.2.0-7ubuntu1) ... 128s Selecting previously unselected package libcc1-0:arm64. 128s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libgomp1:arm64. 128s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libitm1:arm64. 128s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libatomic1:arm64. 128s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libasan8:arm64. 128s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package liblsan0:arm64. 128s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 128s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 128s Selecting previously unselected package libtsan2:arm64. 129s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libubsan1:arm64. 129s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libhwasan0:arm64. 129s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 129s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 129s Selecting previously unselected package libgcc-13-dev:arm64. 129s Preparing 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 130s Unpacking build-essential (12.10ubuntu1) ... 130s Selecting previously unselected package dctrl-tools. 130s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 130s Unpacking dctrl-tools (2.24-3build2) ... 130s Selecting previously unselected package fonts-dejavu-mono. 130s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 130s Unpacking fonts-dejavu-mono (2.37-8) ... 130s Selecting previously unselected package fonts-dejavu-core. 130s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 130s Unpacking fonts-dejavu-core (2.37-8) ... 130s Selecting previously unselected package fontconfig-config. 130s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 130s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 130s Selecting previously unselected package libfontconfig1:arm64. 130s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 130s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 130s Selecting previously unselected package fontconfig. 131s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 131s Unpacking fontconfig (2.15.0-1ubuntu1) ... 131s Selecting previously unselected package fonts-font-awesome. 131s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 131s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 131s Selecting previously unselected package fonts-glyphicons-halflings. 131s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 131s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 131s Selecting previously unselected package fonts-mathjax. 131s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 131s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 131s Selecting previously unselected package libgfortran5:arm64. 131s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb 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Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 131s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 131s Selecting previously unselected package icu-devtools. 131s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 131s Unpacking icu-devtools (74.2-1ubuntu1) ... 131s Selecting previously unselected package javascript-common. 131s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 131s Unpacking javascript-common (11+nmu1) ... 131s Selecting previously unselected package libblas3:arm64. 131s Preparing to unpack .../051-libblas3_3.12.0-3_arm64.deb ... 131s Unpacking libblas3:arm64 (3.12.0-3) ... 131s Selecting previously unselected package libblas-dev:arm64. 131s Preparing to unpack .../052-libblas-dev_3.12.0-3_arm64.deb ... 131s Unpacking libblas-dev:arm64 (3.12.0-3) ... 131s Selecting previously unselected package libboost1.83-dev:arm64. 131s Preparing to unpack .../053-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 131s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 133s Selecting previously unselected package libboost-dev:arm64. 133s Preparing to unpack .../054-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 133s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 133s Selecting previously unselected package libbz2-dev:arm64. 133s Preparing to unpack .../055-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 133s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 133s Selecting previously unselected package libpixman-1-0:arm64. 133s Preparing to unpack .../056-libpixman-1-0_0.42.2-1_arm64.deb ... 133s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 133s Selecting previously unselected package libxcb-render0:arm64. 133s Preparing to unpack .../057-libxcb-render0_1.15-1_arm64.deb ... 133s Unpacking libxcb-render0:arm64 (1.15-1) ... 133s Selecting previously unselected package libxcb-shm0:arm64. 133s Preparing to unpack .../058-libxcb-shm0_1.15-1_arm64.deb ... 133s Unpacking libxcb-shm0:arm64 (1.15-1) ... 133s Selecting previously unselected package libxrender1:arm64. 133s Preparing to unpack .../059-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 133s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 133s Selecting previously unselected package libcairo2:arm64. 133s Preparing to unpack .../060-libcairo2_1.18.0-1_arm64.deb ... 133s Unpacking libcairo2:arm64 (1.18.0-1) ... 133s Selecting previously unselected package libdatrie1:arm64. 133s Preparing to unpack .../061-libdatrie1_0.2.13-3_arm64.deb ... 133s Unpacking libdatrie1:arm64 (0.2.13-3) ... 133s Selecting previously unselected package libdeflate0:arm64. 134s Preparing to unpack .../062-libdeflate0_1.19-1_arm64.deb ... 134s Unpacking libdeflate0:arm64 (1.19-1) ... 134s Selecting previously unselected package libhttp-parser2.9:arm64. 134s Preparing to unpack .../063-libhttp-parser2.9_2.9.4-6_arm64.deb ... 134s Unpacking libhttp-parser2.9:arm64 (2.9.4-6) ... 134s Selecting previously unselected package libssh2-1:arm64. 134s Preparing to unpack .../064-libssh2-1_1.11.0-4_arm64.deb ... 134s Unpacking libssh2-1:arm64 (1.11.0-4) ... 134s Selecting previously unselected package libgit2-1.7:arm64. 134s Preparing to unpack .../065-libgit2-1.7_1.7.2+ds-1ubuntu1_arm64.deb ... 134s Unpacking libgit2-1.7:arm64 (1.7.2+ds-1ubuntu1) ... 134s Selecting previously unselected package libgraphite2-3:arm64. 134s Preparing to unpack .../066-libgraphite2-3_1.3.14-2_arm64.deb ... 134s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 134s Selecting previously unselected package libharfbuzz0b:arm64. 134s Preparing to unpack .../067-libharfbuzz0b_8.3.0-2_arm64.deb ... 134s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 134s Selecting previously unselected package x11-common. 134s Preparing to unpack .../068-x11-common_1%3a7.7+23ubuntu2_all.deb ... 134s Unpacking x11-common (1:7.7+23ubuntu2) ... 134s Selecting previously unselected package libice6:arm64. 134s Preparing to unpack .../069-libice6_2%3a1.0.10-1build2_arm64.deb ... 134s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 134s Selecting previously unselected package libicu-dev:arm64. 134s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 134s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 134s Selecting previously unselected package libjpeg-turbo8:arm64. 135s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 135s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 135s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 135s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 135s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 135s Selecting previously unselected package libjpeg8:arm64. 135s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 135s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 135s Selecting previously unselected package libjpeg8-dev:arm64. 135s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 135s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 135s Selecting previously unselected package libjpeg-dev:arm64. 135s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 135s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 135s Selecting previously unselected package libjs-bootstrap. 135s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 135s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 135s Selecting previously unselected package libjs-popper.js. 135s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 135s Unpacking libjs-popper.js (1.16.1+ds-6) ... 135s Selecting previously unselected package libjs-bootstrap4. 135s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 135s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 135s Selecting previously unselected package libjs-d3. 135s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 135s Unpacking libjs-d3 (3.5.17-4) ... 135s Selecting previously unselected package libjs-es5-shim. 135s Preparing to unpack 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libthai-data (0.1.29-2) ... 136s Selecting previously unselected package libthai0:arm64. 136s Preparing to unpack .../096-libthai0_0.1.29-2_arm64.deb ... 136s Unpacking libthai0:arm64 (0.1.29-2) ... 136s Selecting previously unselected package libpango-1.0-0:arm64. 136s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 136s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 136s Selecting previously unselected package libpangoft2-1.0-0:arm64. 136s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 136s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 136s Selecting previously unselected package libpangocairo-1.0-0:arm64. 136s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 136s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 136s Selecting previously unselected package libpaper1:arm64. 136s Preparing to unpack .../100-libpaper1_1.1.29_arm64.deb ... 136s Unpacking libpaper1:arm64 (1.1.29) ... 136s Selecting previously unselected package libpaper-utils. 136s Preparing to unpack .../101-libpaper-utils_1.1.29_arm64.deb ... 136s Unpacking libpaper-utils (1.1.29) ... 137s Selecting previously unselected package libpcre2-16-0:arm64. 137s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 137s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 137s Selecting previously unselected package libpcre2-32-0:arm64. 137s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 137s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 137s Selecting previously unselected package libpcre2-posix3:arm64. 137s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 137s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 137s Selecting previously unselected package libpcre2-dev:arm64. 137s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 137s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 137s Selecting previously unselected package libpkgconf3:arm64. 137s Preparing to unpack .../106-libpkgconf3_1.8.1-2_arm64.deb ... 137s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 137s Selecting previously unselected package zlib1g-dev:arm64. 137s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 137s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 137s Selecting previously unselected package libpng-dev:arm64. 137s Preparing to unpack .../108-libpng-dev_1.6.43-1_arm64.deb ... 137s Unpacking libpng-dev:arm64 (1.6.43-1) ... 137s Selecting previously unselected package libreadline-dev:arm64. 137s Preparing to unpack .../109-libreadline-dev_8.2-3_arm64.deb ... 137s Unpacking libreadline-dev:arm64 (8.2-3) ... 137s Selecting previously unselected package libsharpyuv0:arm64. 137s Preparing to unpack .../110-libsharpyuv0_1.3.2-0.4_arm64.deb ... 137s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 137s Selecting previously unselected package libsm6:arm64. 137s Preparing to unpack .../111-libsm6_2%3a1.2.3-1build2_arm64.deb ... 137s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 137s Selecting previously unselected package libtcl8.6:arm64. 137s Preparing to unpack .../112-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 137s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 137s Selecting previously unselected package libjbig0:arm64. 137s Preparing to unpack .../113-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 137s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 137s Selecting previously unselected package libwebp7:arm64. 137s Preparing to unpack .../114-libwebp7_1.3.2-0.4_arm64.deb ... 137s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 137s Selecting previously unselected package libtiff6:arm64. 137s Preparing to unpack .../115-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 137s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 137s Selecting previously unselected package libxft2:arm64. 137s Preparing to unpack .../116-libxft2_2.3.6-1_arm64.deb ... 137s Unpacking libxft2:arm64 (2.3.6-1) ... 137s Selecting previously unselected package libxss1:arm64. 137s Preparing to unpack .../117-libxss1_1%3a1.2.3-1build2_arm64.deb ... 137s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 137s Selecting previously unselected package libtk8.6:arm64. 137s Preparing to unpack .../118-libtk8.6_8.6.13-2_arm64.deb ... 137s Unpacking libtk8.6:arm64 (8.6.13-2) ... 137s Selecting previously unselected package libxt6:arm64. 137s Preparing to unpack .../119-libxt6_1%3a1.2.1-1.1_arm64.deb ... 137s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 137s Selecting previously unselected package node-bootstrap-sass. 137s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 137s Unpacking node-bootstrap-sass (3.4.3-2) ... 137s Selecting previously unselected package node-html5shiv. 137s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 137s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 137s Selecting previously unselected package node-normalize.css. 137s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 137s Unpacking node-normalize.css (8.0.1-5) ... 137s Selecting previously unselected package pandoc-data. 137s Preparing to unpack .../123-pandoc-data_3.1.3-1_all.deb ... 137s Unpacking pandoc-data (3.1.3-1) ... 137s Selecting previously unselected package pandoc. 137s Preparing to unpack .../124-pandoc_3.1.3+ds-2_arm64.deb ... 137s Unpacking pandoc (3.1.3+ds-2) ... 139s Selecting previously unselected package pkgconf-bin. 139s Preparing to unpack .../125-pkgconf-bin_1.8.1-2_arm64.deb ... 139s Unpacking pkgconf-bin (1.8.1-2) ... 139s Selecting previously unselected package pkgconf:arm64. 139s Preparing to unpack .../126-pkgconf_1.8.1-2_arm64.deb ... 139s Unpacking pkgconf:arm64 (1.8.1-2) ... 139s Selecting previously unselected package pkg-config:arm64. 139s Preparing to unpack .../127-pkg-config_1.8.1-2_arm64.deb ... 139s Unpacking pkg-config:arm64 (1.8.1-2) ... 139s Selecting previously unselected package zip. 139s Preparing to unpack .../128-zip_3.0-13_arm64.deb ... 139s Unpacking zip (3.0-13) ... 139s Selecting previously unselected package unzip. 139s Preparing to unpack .../129-unzip_6.0-28ubuntu3_arm64.deb ... 139s Unpacking unzip (6.0-28ubuntu3) ... 139s Selecting previously unselected package xdg-utils. 139s Preparing to unpack .../130-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 139s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 139s Selecting previously unselected package r-base-core. 139s Preparing to unpack .../131-r-base-core_4.3.2-1build1_arm64.deb ... 139s Unpacking r-base-core (4.3.2-1build1) ... 139s Selecting previously unselected package liblzma-dev:arm64. 139s Preparing to unpack .../132-liblzma-dev_5.4.5-0.3_arm64.deb ... 139s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 139s Selecting previously unselected package r-base-dev. 139s Preparing to unpack .../133-r-base-dev_4.3.2-1build1_all.deb ... 139s Unpacking r-base-dev (4.3.2-1build1) ... 139s Selecting previously unselected package pkg-r-autopkgtest. 139s Preparing to unpack .../134-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 139s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 139s Selecting previously unselected package r-bioc-biocgenerics. 139s Preparing to unpack .../135-r-bioc-biocgenerics_0.48.1-2_all.deb ... 139s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 139s Selecting previously unselected package r-bioc-biobase. 139s Preparing to unpack .../136-r-bioc-biobase_2.62.0-1_arm64.deb ... 139s Unpacking r-bioc-biobase (2.62.0-1) ... 139s Selecting previously unselected package r-bioc-s4vectors. 139s Preparing to unpack .../137-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 139s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 139s Selecting previously unselected package r-bioc-iranges. 139s Preparing to unpack .../138-r-bioc-iranges_2.36.0-1_arm64.deb ... 139s Unpacking r-bioc-iranges (2.36.0-1) ... 139s Selecting previously unselected package r-cran-dbi. 139s Preparing to unpack .../139-r-cran-dbi_1.2.2-1_all.deb ... 139s Unpacking r-cran-dbi (1.2.2-1) ... 140s Selecting previously unselected package r-cran-bit. 140s Preparing to unpack .../140-r-cran-bit_4.0.5-1_arm64.deb ... 140s Unpacking r-cran-bit (4.0.5-1) ... 140s Selecting previously unselected package r-cran-bit64. 140s Preparing to unpack .../141-r-cran-bit64_4.0.5-1_arm64.deb ... 140s Unpacking r-cran-bit64 (4.0.5-1) ... 140s Selecting previously unselected package r-cran-rlang. 140s Preparing to unpack .../142-r-cran-rlang_1.1.3-1_arm64.deb ... 140s Unpacking r-cran-rlang (1.1.3-1) ... 140s Selecting previously unselected package r-cran-cli. 140s Preparing to unpack .../143-r-cran-cli_3.6.2-1_arm64.deb ... 140s Unpacking r-cran-cli (3.6.2-1) ... 140s Selecting previously unselected package r-cran-glue. 140s Preparing to unpack .../144-r-cran-glue_1.7.0-1_arm64.deb ... 140s Unpacking r-cran-glue (1.7.0-1) ... 140s Selecting previously unselected package r-cran-lifecycle. 140s Preparing to unpack .../145-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 140s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 140s Selecting previously unselected package r-cran-vctrs. 140s Preparing to unpack .../146-r-cran-vctrs_0.6.5-1_arm64.deb ... 140s Unpacking r-cran-vctrs (0.6.5-1) ... 140s Selecting previously unselected package r-cran-blob. 140s Preparing to unpack .../147-r-cran-blob_1.2.4-1_all.deb ... 140s Unpacking r-cran-blob (1.2.4-1) ... 140s Selecting previously unselected package r-cran-fastmap. 140s Preparing to unpack .../148-r-cran-fastmap_1.1.1-1_arm64.deb ... 140s Unpacking r-cran-fastmap (1.1.1-1) ... 140s Selecting previously unselected package r-cran-cachem. 140s Preparing to unpack .../149-r-cran-cachem_1.0.8-1_arm64.deb ... 140s Unpacking r-cran-cachem (1.0.8-1) ... 140s Selecting previously unselected package r-cran-memoise. 140s Preparing to unpack .../150-r-cran-memoise_2.0.1-1_all.deb ... 140s Unpacking r-cran-memoise (2.0.1-1) ... 140s Selecting previously unselected package r-cran-pkgconfig. 140s Preparing to unpack .../151-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 140s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 140s Selecting previously unselected package r-cran-plogr. 140s Preparing to unpack .../152-r-cran-plogr_0.2.0-3build1_all.deb ... 140s Unpacking r-cran-plogr (0.2.0-3build1) ... 140s Selecting previously unselected package r-cran-cpp11. 140s Preparing to unpack .../153-r-cran-cpp11_0.4.7-1_all.deb ... 140s Unpacking r-cran-cpp11 (0.4.7-1) ... 140s Selecting previously unselected package r-cran-rsqlite. 140s Preparing to unpack .../154-r-cran-rsqlite_2.3.4-1_arm64.deb ... 140s Unpacking r-cran-rsqlite (2.3.4-1) ... 140s Selecting previously unselected package r-cran-curl. 140s Preparing to unpack .../155-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 140s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 140s Selecting previously unselected package r-cran-jsonlite. 140s Preparing to unpack .../156-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 140s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 140s Selecting previously unselected package r-cran-mime. 140s Preparing to unpack .../157-r-cran-mime_0.12-1_arm64.deb ... 140s Unpacking r-cran-mime (0.12-1) ... 140s Selecting previously unselected package r-cran-sys. 141s Preparing to unpack .../158-r-cran-sys_3.4.2-1_arm64.deb ... 141s Unpacking r-cran-sys (3.4.2-1) ... 141s Selecting previously unselected package r-cran-askpass. 141s Preparing to unpack .../159-r-cran-askpass_1.2.0-1_arm64.deb ... 141s Unpacking r-cran-askpass (1.2.0-1) ... 141s Selecting previously unselected package r-cran-openssl. 141s Preparing to unpack .../160-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 141s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 141s Selecting previously unselected package r-cran-r6. 141s Preparing to unpack .../161-r-cran-r6_2.5.1-1_all.deb ... 141s Unpacking r-cran-r6 (2.5.1-1) ... 141s Selecting previously unselected package r-cran-httr. 141s Preparing to unpack .../162-r-cran-httr_1.4.7+dfsg-1_all.deb ... 141s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 141s Selecting previously unselected package r-cran-png. 141s Preparing to unpack .../163-r-cran-png_0.1-8-1_arm64.deb ... 141s Unpacking r-cran-png (0.1-8-1) ... 141s Selecting previously unselected package r-bioc-zlibbioc. 141s Preparing to unpack .../164-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 141s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 141s Selecting previously unselected package r-bioc-xvector. 141s Preparing to unpack .../165-r-bioc-xvector_0.42.0-1_arm64.deb ... 141s Unpacking r-bioc-xvector (0.42.0-1) ... 141s Selecting previously unselected package r-cran-bitops. 141s Preparing to unpack .../166-r-cran-bitops_1.0-7-1_arm64.deb ... 141s Unpacking r-cran-bitops (1.0-7-1) ... 141s Selecting previously unselected package r-cran-rcurl. 141s Preparing to unpack .../167-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 141s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 141s Selecting previously unselected package r-bioc-genomeinfodbdata. 141s Preparing to unpack .../168-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 141s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 141s Selecting previously unselected package r-bioc-genomeinfodb. 141s Preparing to unpack .../169-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 141s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 141s Selecting previously unselected package r-cran-crayon. 141s Preparing to unpack .../170-r-cran-crayon_1.5.2-1_all.deb ... 141s Unpacking r-cran-crayon (1.5.2-1) ... 141s Selecting previously unselected package r-bioc-biostrings. 141s Preparing to unpack .../171-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 141s Selecting previously unselected package r-bioc-keggrest. 141s Preparing to unpack .../172-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 141s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 141s Selecting previously unselected package r-bioc-annotationdbi. 141s Preparing to unpack .../173-r-bioc-annotationdbi_1.64.1-1_all.deb ... 141s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 141s Selecting previously unselected package r-bioc-genomicranges. 141s Preparing to unpack .../174-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 141s Selecting previously unselected package r-cran-lazyeval. 141s Preparing to unpack .../175-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 141s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 142s Selecting previously unselected package r-bioc-annotationfilter. 142s Preparing to unpack .../176-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 142s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-generics. 142s Preparing to unpack .../177-r-cran-generics_0.1.3-1_all.deb ... 142s Unpacking r-cran-generics (0.1.3-1) ... 142s Selecting previously unselected package r-cran-magrittr. 142s Preparing to unpack .../178-r-cran-magrittr_2.0.3-1_arm64.deb ... 142s Unpacking r-cran-magrittr (2.0.3-1) ... 142s Selecting previously unselected package r-cran-fansi. 142s Preparing to unpack .../179-r-cran-fansi_1.0.5-1_arm64.deb ... 142s Unpacking r-cran-fansi (1.0.5-1) ... 142s Selecting previously unselected package r-cran-utf8. 142s Preparing to unpack .../180-r-cran-utf8_1.2.4-1_arm64.deb ... 142s Unpacking r-cran-utf8 (1.2.4-1) ... 142s Selecting previously unselected package r-cran-pillar. 142s Preparing to unpack .../181-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 142s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-tibble. 142s Preparing to unpack .../182-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 142s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 142s Selecting previously unselected package r-cran-withr. 142s Preparing to unpack .../183-r-cran-withr_2.5.0-1_all.deb ... 142s Unpacking r-cran-withr (2.5.0-1) ... 142s Selecting previously unselected package r-cran-tidyselect. 142s Preparing to unpack .../184-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 142s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-dplyr. 142s Preparing to unpack .../185-r-cran-dplyr_1.1.4-1_arm64.deb ... 142s Unpacking r-cran-dplyr (1.1.4-1) ... 142s Selecting previously unselected package r-cran-purrr. 142s Preparing to unpack .../186-r-cran-purrr_1.0.2-1_arm64.deb ... 142s Unpacking r-cran-purrr (1.0.2-1) ... 142s Selecting previously unselected package r-cran-stringi. 142s Preparing to unpack .../187-r-cran-stringi_1.8.3-1_arm64.deb ... 142s Unpacking r-cran-stringi (1.8.3-1) ... 142s Selecting previously unselected package r-cran-stringr. 142s Preparing to unpack .../188-r-cran-stringr_1.5.1-1_all.deb ... 142s Unpacking r-cran-stringr (1.5.1-1) ... 142s Selecting previously unselected package r-cran-tidyr. 142s Preparing to unpack .../189-r-cran-tidyr_1.3.1-1_arm64.deb ... 142s Unpacking r-cran-tidyr (1.3.1-1) ... 142s Selecting previously unselected package r-cran-dbplyr. 142s Preparing to unpack .../190-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 142s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-filelock. 142s Preparing to unpack .../191-r-cran-filelock_1.0.3-1_arm64.deb ... 142s Unpacking r-cran-filelock (1.0.3-1) ... 142s Selecting previously unselected package r-bioc-biocfilecache. 142s Preparing to unpack .../192-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 142s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 142s Selecting previously unselected package r-bioc-biocio. 142s Preparing to unpack .../193-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 142s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 142s Selecting previously unselected package r-cran-formatr. 142s Preparing to unpack .../194-r-cran-formatr_1.14-1_all.deb ... 142s Unpacking r-cran-formatr (1.14-1) ... 142s Selecting previously unselected package r-cran-lambda.r. 142s Preparing to unpack .../195-r-cran-lambda.r_1.2.4-2build1_all.deb ... 142s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 143s Selecting previously unselected package r-cran-futile.options. 143s Preparing to unpack .../196-r-cran-futile.options_1.0.1-3build1_all.deb ... 143s Unpacking r-cran-futile.options (1.0.1-3build1) ... 143s Selecting previously unselected package r-cran-futile.logger. 143s Preparing to unpack .../197-r-cran-futile.logger_1.4.3-4build1_all.deb ... 143s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 143s Selecting previously unselected package r-cran-snow. 143s Preparing to unpack .../198-r-cran-snow_1%3a0.4.4-2_all.deb ... 143s Unpacking r-cran-snow (1:0.4.4-2) ... 143s Selecting previously unselected package r-cran-codetools. 143s Preparing to unpack .../199-r-cran-codetools_0.2-19-1_all.deb ... 143s Unpacking r-cran-codetools (0.2-19-1) ... 143s Selecting previously unselected package r-cran-bh. 143s Preparing to unpack .../200-r-cran-bh_1.84.0-1_all.deb ... 143s Unpacking r-cran-bh (1.84.0-1) ... 143s Selecting previously unselected package r-bioc-biocparallel. 143s Preparing to unpack .../201-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 143s Unpacking r-bioc-biocparallel (1.36.0-1) ... 143s Selecting previously unselected package r-cran-xml. 143s Preparing to unpack .../202-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 143s Unpacking r-cran-xml (3.99-0.16.1-1) ... 143s Selecting previously unselected package r-cran-hms. 143s Preparing to unpack .../203-r-cran-hms_1.1.3-1_all.deb ... 143s Unpacking r-cran-hms (1.1.3-1) ... 143s Selecting previously unselected package r-cran-prettyunits. 143s Preparing to unpack .../204-r-cran-prettyunits_1.2.0-1_all.deb ... 143s Unpacking r-cran-prettyunits (1.2.0-1) ... 143s Selecting previously unselected package r-cran-progress. 143s Preparing to unpack .../205-r-cran-progress_1.2.3-1_all.deb ... 143s Unpacking r-cran-progress (1.2.3-1) ... 143s Selecting previously unselected package r-cran-digest. 143s Preparing to unpack .../206-r-cran-digest_0.6.34-1_arm64.deb ... 143s Unpacking r-cran-digest (0.6.34-1) ... 143s Selecting previously unselected package r-cran-rappdirs. 143s Preparing to unpack .../207-r-cran-rappdirs_0.3.3-1_arm64.deb ... 143s Unpacking r-cran-rappdirs (0.3.3-1) ... 143s Selecting previously unselected package r-cran-xml2. 143s Preparing to unpack .../208-r-cran-xml2_1.3.6-1_arm64.deb ... 143s Unpacking r-cran-xml2 (1.3.6-1) ... 143s Selecting previously unselected package r-bioc-biomart. 143s Preparing to unpack .../209-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 143s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 143s Selecting previously unselected package r-cran-farver. 143s Preparing to unpack .../210-r-cran-farver_2.1.1-1_arm64.deb ... 143s Unpacking r-cran-farver (2.1.1-1) ... 143s Selecting previously unselected package r-cran-labeling. 143s Preparing to unpack .../211-r-cran-labeling_0.4.3-1_all.deb ... 143s Unpacking r-cran-labeling (0.4.3-1) ... 143s Selecting previously unselected package r-cran-colorspace. 143s Preparing to unpack .../212-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 143s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 143s Selecting previously unselected package r-cran-munsell. 143s Preparing to unpack .../213-r-cran-munsell_0.5.0-2build1_all.deb ... 143s Unpacking r-cran-munsell (0.5.0-2build1) ... 144s Selecting previously unselected package r-cran-rcolorbrewer. 144s Preparing to unpack .../214-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 144s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 144s Selecting previously unselected package r-cran-viridislite. 144s Preparing to unpack .../215-r-cran-viridislite_0.4.2-2_all.deb ... 144s Unpacking r-cran-viridislite (0.4.2-2) ... 144s Selecting previously unselected package r-cran-scales. 144s Preparing to unpack .../216-r-cran-scales_1.3.0-1_all.deb ... 144s Unpacking r-cran-scales (1.3.0-1) ... 144s Selecting previously unselected package r-cran-gtable. 144s Preparing to unpack .../217-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 144s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 144s Selecting previously unselected package r-cran-isoband. 144s Preparing to unpack .../218-r-cran-isoband_0.2.7-1_arm64.deb ... 144s Unpacking r-cran-isoband (0.2.7-1) ... 144s Selecting previously unselected package r-cran-mass. 144s Preparing to unpack .../219-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 144s Unpacking r-cran-mass (7.3-60.0.1-1) ... 144s Selecting previously unselected package r-cran-lattice. 144s Preparing to unpack .../220-r-cran-lattice_0.22-5-1_arm64.deb ... 144s Unpacking r-cran-lattice (0.22-5-1) ... 144s Selecting previously unselected package r-cran-nlme. 144s Preparing to unpack .../221-r-cran-nlme_3.1.164-1_arm64.deb ... 144s Unpacking r-cran-nlme (3.1.164-1) ... 144s Selecting previously unselected package r-cran-matrix. 144s Preparing to unpack .../222-r-cran-matrix_1.6-5-1_arm64.deb ... 144s Unpacking r-cran-matrix (1.6-5-1) ... 144s Selecting previously unselected package r-cran-mgcv. 144s Preparing to unpack .../223-r-cran-mgcv_1.9-1-1_arm64.deb ... 144s Unpacking r-cran-mgcv (1.9-1-1) ... 144s Selecting previously unselected package r-cran-ggplot2. 144s Preparing to unpack .../224-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 144s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 144s Selecting previously unselected package r-cran-cluster. 144s Preparing to unpack .../225-r-cran-cluster_2.1.6-1_arm64.deb ... 144s Unpacking r-cran-cluster (2.1.6-1) ... 144s Selecting previously unselected package r-cran-survival. 144s Preparing to unpack .../226-r-cran-survival_3.5-8-1_arm64.deb ... 144s Unpacking r-cran-survival (3.5-8-1) ... 144s Selecting previously unselected package r-cran-rpart. 144s Preparing to unpack .../227-r-cran-rpart_4.1.23-1_arm64.deb ... 144s Unpacking r-cran-rpart (4.1.23-1) ... 144s Selecting previously unselected package r-cran-nnet. 144s Preparing to unpack .../228-r-cran-nnet_7.3-19-2_arm64.deb ... 144s Unpacking r-cran-nnet (7.3-19-2) ... 144s Selecting previously unselected package r-cran-foreign. 144s Preparing to unpack .../229-r-cran-foreign_0.8.86-1_arm64.deb ... 144s Unpacking r-cran-foreign (0.8.86-1) ... 144s Selecting previously unselected package r-cran-gridextra. 144s Preparing to unpack .../230-r-cran-gridextra_2.3-3build1_all.deb ... 144s Unpacking r-cran-gridextra (2.3-3build1) ... 145s Selecting previously unselected package r-cran-data.table. 145s Preparing to unpack .../231-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 145s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 145s Selecting previously unselected package r-cran-evaluate. 145s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 145s Unpacking r-cran-evaluate (0.23-1) ... 145s Selecting previously unselected package r-cran-xfun. 145s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 145s Unpacking r-cran-xfun (0.41+dfsg-1) ... 145s Selecting previously unselected package r-cran-highr. 145s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 145s Unpacking r-cran-highr (0.10+dfsg-1) ... 145s Selecting previously unselected package r-cran-yaml. 145s Preparing to unpack .../235-r-cran-yaml_2.3.8-1_arm64.deb ... 145s Unpacking r-cran-yaml (2.3.8-1) ... 145s Selecting previously unselected package libjs-mathjax. 145s Preparing to unpack .../236-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 145s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 145s Selecting previously unselected package r-cran-knitr. 145s Preparing to unpack .../237-r-cran-knitr_1.45+dfsg-1_all.deb ... 145s Unpacking r-cran-knitr (1.45+dfsg-1) ... 145s Selecting previously unselected package r-cran-backports. 146s Preparing to unpack .../238-r-cran-backports_1.4.1-1_arm64.deb ... 146s Unpacking r-cran-backports (1.4.1-1) ... 146s Selecting previously unselected package r-cran-checkmate. 146s Preparing to unpack .../239-r-cran-checkmate_2.3.1-1_arm64.deb ... 146s Unpacking r-cran-checkmate (2.3.1-1) ... 146s Selecting previously unselected package r-cran-base64enc. 146s Preparing to unpack .../240-r-cran-base64enc_0.1-3-3_arm64.deb ... 146s Unpacking r-cran-base64enc (0.1-3-3) ... 146s Selecting previously unselected package r-cran-ellipsis. 146s Preparing to unpack .../241-r-cran-ellipsis_0.3.2-2_arm64.deb ... 146s Unpacking r-cran-ellipsis (0.3.2-2) ... 146s Selecting previously unselected package r-cran-htmltools. 146s Preparing to unpack .../242-r-cran-htmltools_0.5.7-1_arm64.deb ... 146s Unpacking r-cran-htmltools (0.5.7-1) ... 146s Selecting previously unselected package r-cran-jquerylib. 146s Preparing to unpack .../243-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 146s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 146s Selecting previously unselected package r-cran-fs. 146s Preparing to unpack .../244-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 146s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 146s Selecting previously unselected package r-cran-sass. 146s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 146s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 146s Selecting previously unselected package r-cran-bslib. 146s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 146s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 146s Selecting previously unselected package r-cran-fontawesome. 146s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 146s Unpacking r-cran-fontawesome (0.5.2-1) ... 146s Selecting previously unselected package r-cran-tinytex. 146s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 146s Unpacking r-cran-tinytex (0.49-1) ... 146s Selecting previously unselected package libjs-modernizr. 146s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 146s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 146s Selecting previously unselected package r-cran-littler. 146s Preparing to unpack .../250-r-cran-littler_0.3.19-1_arm64.deb ... 146s Unpacking r-cran-littler (0.3.19-1) ... 146s Selecting previously unselected package r-cran-pkgkitten. 146s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 146s Unpacking r-cran-pkgkitten (0.2.3-1) ... 146s Selecting previously unselected package r-cran-rcpp. 146s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_arm64.deb ... 146s Unpacking r-cran-rcpp (1.0.12-1) ... 146s Selecting previously unselected package r-cran-later. 146s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 146s Unpacking r-cran-later (1.3.2+dfsg-1) ... 146s Selecting previously unselected package r-cran-promises. 146s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 146s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 146s Selecting previously unselected package r-cran-httpuv. 146s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 146s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 146s Selecting previously unselected package r-cran-xtable. 146s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 146s Unpacking r-cran-xtable (1:1.8-4-2) ... 147s Selecting previously unselected package r-cran-sourcetools. 147s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 147s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 147s Selecting previously unselected package r-cran-commonmark. 147s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_arm64.deb ... 147s Unpacking r-cran-commonmark (1.9.1-1) ... 147s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 147s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 147s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 147s Selecting previously unselected package r-cran-shiny. 147s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 147s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 147s Selecting previously unselected package r-cran-rmarkdown. 147s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 147s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 147s Selecting previously unselected package r-cran-htmlwidgets. 147s Preparing to unpack .../262-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 147s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 147s Selecting previously unselected package r-cran-rstudioapi. 147s Preparing to unpack .../263-r-cran-rstudioapi_0.15.0-1_all.deb ... 147s Unpacking r-cran-rstudioapi (0.15.0-1) ... 147s Selecting previously unselected package r-cran-htmltable. 147s Preparing to unpack .../264-r-cran-htmltable_2.4.2-1_all.deb ... 147s Unpacking r-cran-htmltable (2.4.2-1) ... 147s Selecting previously unselected package r-cran-viridis. 147s Preparing to unpack .../265-r-cran-viridis_0.6.5-1_all.deb ... 147s Unpacking r-cran-viridis (0.6.5-1) ... 147s Selecting previously unselected package r-cran-formula. 147s Preparing to unpack .../266-r-cran-formula_1.2-5-1_all.deb ... 147s Unpacking r-cran-formula (1.2-5-1) ... 147s Selecting previously unselected package r-cran-chron. 147s Preparing to unpack .../267-r-cran-chron_2.3-61-2_arm64.deb ... 147s Unpacking r-cran-chron (2.3-61-2) ... 147s Selecting previously unselected package r-cran-jpeg. 147s Preparing to unpack .../268-r-cran-jpeg_0.1-10-1_arm64.deb ... 147s Unpacking r-cran-jpeg (0.1-10-1) ... 147s Selecting previously unselected package r-cran-deldir. 147s Preparing to unpack .../269-r-cran-deldir_2.0-4-1_arm64.deb ... 147s Unpacking r-cran-deldir (2.0-4-1) ... 147s Selecting previously unselected package r-cran-rcppeigen. 147s Preparing to unpack .../270-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 147s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 147s Selecting previously unselected package r-cran-interp. 147s Preparing to unpack .../271-r-cran-interp_1.1-6-1_arm64.deb ... 147s Unpacking r-cran-interp (1.1-6-1) ... 147s Selecting previously unselected package r-cran-latticeextra. 147s Preparing to unpack .../272-r-cran-latticeextra_0.6-30-1_all.deb ... 147s Unpacking r-cran-latticeextra (0.6-30-1) ... 148s Selecting previously unselected package r-cran-acepack. 148s Preparing to unpack .../273-r-cran-acepack_1.4.2-1_arm64.deb ... 148s Unpacking r-cran-acepack (1.4.2-1) ... 148s Selecting previously unselected package r-cran-hmisc. 148s Preparing to unpack .../274-r-cran-hmisc_5.1-1-1_arm64.deb ... 148s Unpacking r-cran-hmisc (5.1-1-1) ... 148s Selecting previously unselected package r-cran-dichromat. 148s Preparing to unpack .../275-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 148s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 148s Selecting previously unselected package r-cran-matrixstats. 148s Preparing to unpack .../276-r-cran-matrixstats_1.2.0-1_arm64.deb ... 148s Unpacking r-cran-matrixstats (1.2.0-1) ... 148s Selecting previously unselected package r-bioc-matrixgenerics. 148s Preparing to unpack .../277-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 148s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 148s Selecting previously unselected package r-cran-abind. 148s Preparing to unpack .../278-r-cran-abind_1.4-5-2_all.deb ... 148s Unpacking r-cran-abind (1.4-5-2) ... 148s Selecting previously unselected package r-bioc-s4arrays. 148s Preparing to unpack .../279-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 148s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 148s Selecting previously unselected package r-bioc-sparsearray. 148s Preparing to unpack .../280-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 148s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 148s Selecting previously unselected package r-bioc-delayedarray. 148s Preparing to unpack .../281-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 148s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 148s Selecting previously unselected package r-bioc-summarizedexperiment. 148s Preparing to unpack .../282-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 148s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 148s Selecting previously unselected package r-bioc-rhtslib. 148s Preparing to unpack .../283-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 148s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 148s Selecting previously unselected package r-bioc-rsamtools. 148s Preparing to unpack .../284-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 148s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 148s Selecting previously unselected package r-bioc-genomicalignments. 148s Preparing to unpack .../285-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 148s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 148s Selecting previously unselected package r-cran-rjson. 148s Preparing to unpack .../286-r-cran-rjson_0.2.21-1_arm64.deb ... 148s Unpacking r-cran-rjson (0.2.21-1) ... 148s Selecting previously unselected package r-cran-restfulr. 148s Preparing to unpack .../287-r-cran-restfulr_0.0.15-1_arm64.deb ... 148s Unpacking r-cran-restfulr (0.0.15-1) ... 148s Selecting previously unselected package r-bioc-rtracklayer. 148s Preparing to unpack .../288-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 148s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 148s Selecting previously unselected package r-bioc-genomicfeatures. 148s Preparing to unpack .../289-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 148s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 148s Selecting previously unselected package r-bioc-bsgenome. 148s Preparing to unpack .../290-r-bioc-bsgenome_1.70.2-1_all.deb ... 148s Unpacking r-bioc-bsgenome (1.70.2-1) ... 149s Selecting previously unselected package r-bioc-variantannotation. 149s Preparing to unpack .../291-r-bioc-variantannotation_1.48.1-1build1_arm64.deb ... 149s Unpacking r-bioc-variantannotation (1.48.1-1build1) ... 149s Selecting previously unselected package r-bioc-protgenerics. 149s Preparing to unpack .../292-r-bioc-protgenerics_1.34.0-1_all.deb ... 149s Unpacking r-bioc-protgenerics (1.34.0-1) ... 149s Selecting previously unselected package r-bioc-ensembldb. 149s Preparing to unpack .../293-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 149s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 149s Selecting previously unselected package r-bioc-biovizbase. 149s Preparing to unpack .../294-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 149s Unpacking r-bioc-biovizbase (1.50.0-1) ... 149s Selecting previously unselected package r-cran-plyr. 149s Preparing to unpack .../295-r-cran-plyr_1.8.9-1_arm64.deb ... 149s Unpacking r-cran-plyr (1.8.9-1) ... 149s Selecting previously unselected package r-cran-reshape2. 149s Preparing to unpack .../296-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 149s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 149s Selecting previously unselected package r-cran-biocmanager. 149s Preparing to unpack .../297-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 149s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 149s Selecting previously unselected package r-bioc-graph. 149s Preparing to unpack .../298-r-bioc-graph_1.80.0-1_arm64.deb ... 149s Unpacking r-bioc-graph (1.80.0-1) ... 149s Selecting previously unselected package r-bioc-rbgl. 149s Preparing to unpack .../299-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 149s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 149s Selecting previously unselected package r-bioc-organismdbi. 149s Preparing to unpack .../300-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 149s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 149s Selecting previously unselected package r-cran-broom. 149s Preparing to unpack .../301-r-cran-broom_1.0.5+dfsg-1_all.deb ... 149s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 149s Selecting previously unselected package r-cran-forcats. 149s Preparing to unpack .../302-r-cran-forcats_1.0.0-1_all.deb ... 149s Unpacking r-cran-forcats (1.0.0-1) ... 149s Selecting previously unselected package r-cran-clipr. 149s Preparing to unpack .../303-r-cran-clipr_0.8.0-1_all.deb ... 149s Unpacking r-cran-clipr (0.8.0-1) ... 149s Selecting previously unselected package r-cran-tzdb. 149s Preparing to unpack .../304-r-cran-tzdb_0.4.0-2_arm64.deb ... 149s Unpacking r-cran-tzdb (0.4.0-2) ... 149s Selecting previously unselected package r-cran-vroom. 149s Preparing to unpack .../305-r-cran-vroom_1.6.5-1_arm64.deb ... 149s Unpacking r-cran-vroom (1.6.5-1) ... 149s Selecting previously unselected package r-cran-readr. 149s Preparing to unpack .../306-r-cran-readr_2.1.5-1_arm64.deb ... 149s Unpacking r-cran-readr (2.1.5-1) ... 149s Selecting previously unselected package r-cran-haven. 149s Preparing to unpack .../307-r-cran-haven_2.5.4-1_arm64.deb ... 149s Unpacking r-cran-haven (2.5.4-1) ... 149s Selecting previously unselected package r-cran-labelled. 150s Preparing to unpack .../308-r-cran-labelled_2.12.0-2_all.deb ... 150s Unpacking r-cran-labelled (2.12.0-2) ... 150s Selecting previously unselected package r-cran-broom.helpers. 150s Preparing to unpack .../309-r-cran-broom.helpers_1.14.0-2_all.deb ... 150s Unpacking r-cran-broom.helpers (1.14.0-2) ... 150s Selecting previously unselected package r-cran-patchwork. 150s Preparing to unpack .../310-r-cran-patchwork_1.2.0-1_all.deb ... 150s Unpacking r-cran-patchwork (1.2.0-1) ... 150s Selecting previously unselected package r-cran-ggstats. 150s Preparing to unpack .../311-r-cran-ggstats_0.5.1-2_all.deb ... 150s Unpacking r-cran-ggstats (0.5.1-2) ... 150s Selecting previously unselected package r-cran-ggally. 150s Preparing to unpack .../312-r-cran-ggally_2.2.1-1_all.deb ... 150s Unpacking r-cran-ggally (2.2.1-1) ... 150s Selecting previously unselected package r-bioc-ggbio. 150s Preparing to unpack .../313-r-bioc-ggbio_1.50.0-1_all.deb ... 150s Unpacking r-bioc-ggbio (1.50.0-1) ... 150s Selecting previously unselected package r-cran-assertthat. 150s Preparing to unpack .../314-r-cran-assertthat_0.2.1-2build1_all.deb ... 150s Unpacking r-cran-assertthat (0.2.1-2build1) ... 150s Selecting previously unselected package r-bioc-structuralvariantannotation. 150s Preparing to unpack .../315-r-bioc-structuralvariantannotation_1.18.0+ds-1_all.deb ... 150s Unpacking r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 150s Selecting previously unselected package r-cran-brew. 150s Preparing to unpack .../316-r-cran-brew_1.0-10-1_all.deb ... 150s Unpacking r-cran-brew (1.0-10-1) ... 150s Selecting previously unselected package r-cran-brio. 150s Preparing to unpack .../317-r-cran-brio_1.1.4-1_arm64.deb ... 150s Unpacking r-cran-brio (1.1.4-1) ... 150s Selecting previously unselected package r-cran-ps. 150s Preparing to unpack .../318-r-cran-ps_1.7.6-1_arm64.deb ... 150s Unpacking r-cran-ps (1.7.6-1) ... 150s Selecting previously unselected package r-cran-processx. 150s Preparing to unpack .../319-r-cran-processx_3.8.3-1_arm64.deb ... 150s Unpacking r-cran-processx (3.8.3-1) ... 150s Selecting previously unselected package r-cran-callr. 150s Preparing to unpack .../320-r-cran-callr_3.7.3-2_all.deb ... 150s Unpacking r-cran-callr (3.7.3-2) ... 150s Selecting previously unselected package r-cran-rematch. 150s Preparing to unpack .../321-r-cran-rematch_2.0.0-1_all.deb ... 150s Unpacking r-cran-rematch (2.0.0-1) ... 150s Selecting previously unselected package r-cran-cellranger. 150s Preparing to unpack .../322-r-cran-cellranger_1.1.0-3_all.deb ... 150s Unpacking r-cran-cellranger (1.1.0-3) ... 150s Selecting previously unselected package r-cran-conflicted. 150s Preparing to unpack .../323-r-cran-conflicted_1.2.0-1.1_all.deb ... 150s Unpacking r-cran-conflicted (1.2.0-1.1) ... 150s Selecting previously unselected package r-cran-credentials. 150s Preparing to unpack .../324-r-cran-credentials_2.0.1-1_all.deb ... 150s Unpacking r-cran-credentials (2.0.1-1) ... 150s Selecting previously unselected package r-cran-desc. 150s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 150s Unpacking r-cran-desc (1.4.3-1) ... 150s Selecting previously unselected package r-cran-zip. 150s Preparing to unpack .../326-r-cran-zip_2.3.1-1_arm64.deb ... 150s Unpacking r-cran-zip (2.3.1-1) ... 150s Selecting previously unselected package r-cran-gert. 150s Preparing to unpack .../327-r-cran-gert_2.0.1+dfsg-1_arm64.deb ... 150s Unpacking r-cran-gert (2.0.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-gitcreds. 150s Preparing to unpack .../328-r-cran-gitcreds_0.1.2-1_all.deb ... 150s Unpacking r-cran-gitcreds (0.1.2-1) ... 150s Selecting previously unselected package r-cran-httr2. 150s Preparing to unpack .../329-r-cran-httr2_1.0.0-1_all.deb ... 150s Unpacking r-cran-httr2 (1.0.0-1) ... 151s Selecting previously unselected package r-cran-ini. 151s Preparing to unpack .../330-r-cran-ini_0.3.1-2build1_all.deb ... 151s Unpacking r-cran-ini (0.3.1-2build1) ... 151s Selecting previously unselected package r-cran-gh. 151s Preparing to unpack .../331-r-cran-gh_1.4.0-1_all.deb ... 151s Unpacking r-cran-gh (1.4.0-1) ... 151s Selecting previously unselected package r-cran-rprojroot. 151s Preparing to unpack .../332-r-cran-rprojroot_2.0.4-1_all.deb ... 151s Unpacking r-cran-rprojroot (2.0.4-1) ... 151s Selecting previously unselected package r-cran-whisker. 151s Preparing to unpack .../333-r-cran-whisker_0.4.1-1_all.deb ... 151s Unpacking r-cran-whisker (0.4.1-1) ... 151s Selecting previously unselected package r-cran-usethis. 151s Preparing to unpack .../334-r-cran-usethis_2.2.2-1_all.deb ... 151s Unpacking r-cran-usethis (2.2.2-1) ... 151s Selecting previously unselected package r-cran-miniui. 151s Preparing to unpack .../335-r-cran-miniui_0.1.1.1-3build1_all.deb ... 151s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 151s Selecting previously unselected package r-cran-pkgbuild. 151s Preparing to unpack .../336-r-cran-pkgbuild_1.4.3-1_all.deb ... 151s Unpacking r-cran-pkgbuild (1.4.3-1) ... 151s Selecting previously unselected package r-cran-downlit. 151s Preparing to unpack .../337-r-cran-downlit_0.4.3-1_all.deb ... 151s Unpacking r-cran-downlit (0.4.3-1) ... 151s Selecting previously unselected package r-cran-systemfonts. 151s Preparing to unpack .../338-r-cran-systemfonts_1.0.5-1_arm64.deb ... 151s Unpacking r-cran-systemfonts (1.0.5-1) ... 151s Selecting previously unselected package r-cran-textshaping. 151s Preparing to unpack .../339-r-cran-textshaping_0.3.7-2_arm64.deb ... 151s Unpacking r-cran-textshaping (0.3.7-2) ... 151s Selecting previously unselected package r-cran-ragg. 151s Preparing to unpack .../340-r-cran-ragg_1.2.7-1_arm64.deb ... 151s Unpacking r-cran-ragg (1.2.7-1) ... 151s Selecting previously unselected package libjs-bootswatch. 151s Preparing to unpack .../341-libjs-bootswatch_3.3.7+dfsg2-1.1_all.deb ... 151s Unpacking libjs-bootswatch (3.3.7+dfsg2-1.1) ... 151s Selecting previously unselected package r-cran-pkgdown. 151s Preparing to unpack .../342-r-cran-pkgdown_2.0.7-2_all.deb ... 151s Unpacking r-cran-pkgdown (2.0.7-2) ... 151s Selecting previously unselected package r-cran-pkgload. 151s Preparing to unpack .../343-r-cran-pkgload_1.3.4-1_all.deb ... 151s Unpacking r-cran-pkgload (1.3.4-1) ... 151s Selecting previously unselected package r-cran-profvis. 151s Preparing to unpack .../344-r-cran-profvis_0.3.8+dfsg-1_arm64.deb ... 151s Unpacking r-cran-profvis (0.3.8+dfsg-1) ... 151s Selecting previously unselected package r-cran-sessioninfo. 151s Preparing to unpack .../345-r-cran-sessioninfo_1.2.2-1_all.deb ... 151s Unpacking r-cran-sessioninfo (1.2.2-1) ... 151s Selecting previously unselected package r-cran-xopen. 151s Preparing to unpack .../346-r-cran-xopen_1.0.0+dfsg-1_all.deb ... 151s Unpacking r-cran-xopen (1.0.0+dfsg-1) ... 151s Selecting previously unselected package r-cran-rcmdcheck. 151s Preparing to unpack .../347-r-cran-rcmdcheck_1.4.0-2_all.deb ... 151s Unpacking r-cran-rcmdcheck (1.4.0-2) ... 152s Selecting previously unselected package r-cran-remotes. 152s Preparing to unpack .../348-r-cran-remotes_2.4.2.1+dfsg-2_all.deb ... 152s Unpacking r-cran-remotes (2.4.2.1+dfsg-2) ... 152s Selecting previously unselected package r-cran-roxygen2. 152s Preparing to unpack .../349-r-cran-roxygen2_7.3.1-1_arm64.deb ... 152s Unpacking r-cran-roxygen2 (7.3.1-1) ... 152s Selecting previously unselected package r-cran-rversions. 152s Preparing to unpack .../350-r-cran-rversions_2.1.2-1_all.deb ... 152s Unpacking r-cran-rversions (2.1.2-1) ... 152s Selecting previously unselected package r-cran-praise. 152s Preparing to unpack .../351-r-cran-praise_1.0.0-4build1_all.deb ... 152s Unpacking r-cran-praise (1.0.0-4build1) ... 152s Selecting previously unselected package r-cran-diffobj. 152s Preparing to unpack .../352-r-cran-diffobj_0.3.5-1_arm64.deb ... 152s Unpacking r-cran-diffobj (0.3.5-1) ... 152s Selecting previously unselected package r-cran-rematch2. 152s Preparing to unpack .../353-r-cran-rematch2_2.1.2-2build1_all.deb ... 152s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 152s Selecting previously unselected package r-cran-waldo. 152s Preparing to unpack .../354-r-cran-waldo_0.5.2-1build1_all.deb ... 152s Unpacking r-cran-waldo (0.5.2-1build1) ... 152s Selecting previously unselected package r-cran-testthat. 152s Preparing to unpack .../355-r-cran-testthat_3.2.1-1_arm64.deb ... 152s Unpacking r-cran-testthat (3.2.1-1) ... 152s Selecting previously unselected package r-cran-urlchecker. 152s Preparing to unpack .../356-r-cran-urlchecker_1.0.1-2_all.deb ... 152s Unpacking r-cran-urlchecker (1.0.1-2) ... 152s Selecting previously unselected package r-cran-devtools. 152s Preparing to unpack .../357-r-cran-devtools_2.4.5-1_all.deb ... 152s Unpacking r-cran-devtools (2.4.5-1) ... 152s Selecting previously unselected package r-cran-dtplyr. 152s Preparing to unpack .../358-r-cran-dtplyr_1.3.1-1_all.deb ... 152s Unpacking r-cran-dtplyr (1.3.1-1) ... 152s Selecting previously unselected package r-cran-gargle. 152s Preparing to unpack .../359-r-cran-gargle_1.5.2-1_all.deb ... 152s Unpacking r-cran-gargle (1.5.2-1) ... 152s Selecting previously unselected package r-cran-uuid. 152s Preparing to unpack .../360-r-cran-uuid_1.2-0-1_arm64.deb ... 152s Unpacking r-cran-uuid (1.2-0-1) ... 152s Selecting previously unselected package r-cran-googledrive. 152s Preparing to unpack .../361-r-cran-googledrive_2.1.1-1_all.deb ... 152s Unpacking r-cran-googledrive (2.1.1-1) ... 152s Selecting previously unselected package r-cran-ids. 152s Preparing to unpack .../362-r-cran-ids_1.0.1-2_all.deb ... 152s Unpacking r-cran-ids (1.0.1-2) ... 152s Selecting previously unselected package r-cran-googlesheets4. 152s Preparing to unpack .../363-r-cran-googlesheets4_1.1.1-1_all.deb ... 152s Unpacking r-cran-googlesheets4 (1.1.1-1) ... 152s Selecting previously unselected package r-cran-timechange. 152s Preparing to unpack .../364-r-cran-timechange_0.3.0-1_arm64.deb ... 152s Unpacking r-cran-timechange (0.3.0-1) ... 152s Selecting previously unselected package r-cran-lubridate. 152s Preparing to unpack .../365-r-cran-lubridate_1.9.3+dfsg-1_arm64.deb ... 152s Unpacking r-cran-lubridate (1.9.3+dfsg-1) ... 152s Selecting previously unselected package r-cran-modelr. 152s Preparing to unpack .../366-r-cran-modelr_0.1.11-1_all.deb ... 152s Unpacking r-cran-modelr (0.1.11-1) ... 152s Selecting previously unselected package r-cran-readxl. 152s Preparing to unpack .../367-r-cran-readxl_1.4.3-1_arm64.deb ... 152s Unpacking r-cran-readxl (1.4.3-1) ... 152s Selecting previously unselected package r-cran-reprex. 153s Preparing to unpack .../368-r-cran-reprex_2.1.0-1_all.deb ... 153s Unpacking r-cran-reprex (2.1.0-1) ... 153s Selecting previously unselected package r-cran-selectr. 153s Preparing to unpack .../369-r-cran-selectr_0.4-2-2build1_all.deb ... 153s Unpacking r-cran-selectr (0.4-2-2build1) ... 153s Selecting previously unselected package r-cran-rvest. 153s Preparing to unpack .../370-r-cran-rvest_1.0.3-1_all.deb ... 153s Unpacking r-cran-rvest (1.0.3-1) ... 153s Selecting previously unselected package r-cran-tidyverse. 153s Preparing to unpack .../371-r-cran-tidyverse_2.0.0+dfsg-1_all.deb ... 153s Unpacking r-cran-tidyverse (2.0.0+dfsg-1) ... 153s Selecting previously unselected package autopkgtest-satdep. 153s Preparing to unpack .../372-1-autopkgtest-satdep.deb ... 153s Unpacking autopkgtest-satdep (0) ... 153s Setting up libjs-json (0~20221030+~1.0.8-1) ... 153s Setting up javascript-common (11+nmu1) ... 153s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 153s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 153s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 153s Setting up libpaper1:arm64 (1.1.29) ... 153s 153s Creating config file /etc/papersize with new version 153s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 153s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 153s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 153s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 153s Setting up libdatrie1:arm64 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libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 154s Setting up libblas3:arm64 (3.12.0-3) ... 154s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 154s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 154s Setting up libpkgconf3:arm64 (1.8.1-2) ... 154s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 154s Setting up libjs-bootswatch (3.3.7+dfsg2-1.1) ... 154s Setting up libjs-d3 (3.5.17-4) ... 154s Setting up fonts-dejavu-mono (2.37-8) ... 154s Setting up libmpc3:arm64 (1.3.1-1) ... 154s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 154s Setting up icu-devtools (74.2-1ubuntu1) ... 154s Setting up fonts-dejavu-core (2.37-8) ... 154s Setting up pkgconf-bin (1.8.1-2) ... 154s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 154s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libwebp7:arm64 (1.3.2-0.4) ... 154s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 154s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 154s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 154s Setting up libnsl-dev:arm64 (1.3.0-3) ... 154s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 154s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 154s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 154s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 154s Setting up libthai-data (0.1.29-2) ... 154s Setting up libssh2-1:arm64 (1.11.0-4) ... 154s Setting up node-bootstrap-sass (3.4.3-2) ... 154s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 154s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 154s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 154s Setting up pandoc-data (3.1.3-1) ... 154s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 154s Setting up libisl23:arm64 (0.26-3) ... 154s Setting up libc-dev-bin (2.39-0ubuntu2) ... 154s Setting up node-normalize.css (8.0.1-5) ... 154s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 154s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 154s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 154s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 154s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libblas-dev:arm64 (3.12.0-3) ... 154s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 154s Setting up dctrl-tools (2.24-3build2) ... 154s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 154s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 154s Setting up libhttp-parser2.9:arm64 (2.9.4-6) ... 154s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 154s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 154s Setting up libice6:arm64 (2:1.0.10-1build2) ... 154s Setting up liblapack3:arm64 (3.12.0-3) ... 154s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 154s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 154s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 154s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 154s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 154s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 154s Setting up pkgconf:arm64 (1.8.1-2) ... 154s Setting up libthai0:arm64 (0.1.29-2) ... 154s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 154s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 154s Setting up pandoc (3.1.3+ds-2) ... 154s Setting up liblapack-dev:arm64 (3.12.0-3) ... 154s update-alternatives: using 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157s Setting up r-bioc-annotationdbi (1.64.1-1) ... 157s Setting up r-cran-usethis (2.2.2-1) ... 157s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 157s Setting up r-cran-testthat (3.2.1-1) ... 157s Setting up r-cran-miniui (0.1.1.1-3build1) ... 157s Setting up r-cran-broom (1.0.5+dfsg-1) ... 157s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 157s Setting up r-cran-pkgdown (2.0.7-2) ... 157s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 157s Setting up r-cran-labelled (2.12.0-2) ... 157s Setting up r-bioc-genomicalignments (1.38.2-1) ... 157s Setting up r-cran-reprex (2.1.0-1) ... 157s Setting up r-bioc-rtracklayer (1.62.0-1) ... 157s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 157s Setting up r-cran-modelr (0.1.11-1) ... 157s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 157s Setting up r-cran-profvis (0.3.8+dfsg-1) ... 157s Setting up r-cran-broom.helpers (1.14.0-2) ... 157s Setting up r-bioc-bsgenome (1.70.2-1) ... 157s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 157s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 157s Setting up r-cran-ggstats (0.5.1-2) ... 157s Setting up r-cran-devtools (2.4.5-1) ... 157s Setting up r-bioc-variantannotation (1.48.1-1build1) ... 157s Setting up r-cran-tidyverse (2.0.0+dfsg-1) ... 157s Setting up r-cran-ggally (2.2.1-1) ... 157s Setting up r-cran-htmltable (2.4.2-1) ... 157s Setting up r-bioc-structuralvariantannotation (1.18.0+ds-1) ... 157s Setting up r-cran-hmisc (5.1-1-1) ... 157s Setting up r-bioc-biovizbase (1.50.0-1) ... 157s Setting up r-bioc-ggbio (1.50.0-1) ... 157s Setting up autopkgtest-satdep (0) ... 157s Processing triggers for man-db (2.12.0-3) ... 158s Processing triggers for install-info (7.1-3) ... 158s Processing triggers for libc-bin (2.39-0ubuntu2) ... 175s (Reading database ... 124866 files and directories currently installed.) 175s Removing autopkgtest-satdep (0) ... 176s autopkgtest [13:53:51]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 176s autopkgtest [13:53:51]: test pkg-r-autopkgtest: [----------------------- 176s Test: Try to load the R library StructuralVariantAnnotation 177s 177s R version 4.3.2 (2023-10-31) -- "Eye Holes" 177s Copyright (C) 2023 The R Foundation for Statistical Computing 177s Platform: aarch64-unknown-linux-gnu (64-bit) 177s 177s R is free software and comes with ABSOLUTELY NO WARRANTY. 177s You are welcome to redistribute it under certain conditions. 177s Type 'license()' or 'licence()' for distribution details. 177s 177s R is a collaborative project with many contributors. 177s Type 'contributors()' for more information and 177s 'citation()' on how to cite R or R packages in publications. 177s 177s Type 'demo()' for some demos, 'help()' for on-line help, or 177s 'help.start()' for an HTML browser interface to help. 177s Type 'q()' to quit R. 177s 177s > library('StructuralVariantAnnotation') 177s Loading required package: GenomicRanges 177s Loading required package: stats4 177s Loading required package: BiocGenerics 177s 177s Attaching package: ‘BiocGenerics’ 177s 177s The following objects are masked from ‘package:stats’: 177s 177s IQR, mad, sd, var, xtabs 177s 177s The following objects are masked from ‘package:base’: 177s 177s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 177s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 177s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 177s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 177s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 177s table, tapply, union, unique, unsplit, which.max, which.min 177s 177s Loading required package: S4Vectors 178s 178s Attaching package: ‘S4Vectors’ 178s 178s The following object is masked from ‘package:utils’: 178s 178s findMatches 178s 178s The following objects are masked from ‘package:base’: 178s 178s expand.grid, I, unname 178s 178s Loading required package: IRanges 178s Loading required package: GenomeInfoDb 179s Loading required package: rtracklayer 185s Loading required package: VariantAnnotation 185s Loading required package: MatrixGenerics 185s Loading required package: matrixStats 185s 185s Attaching package: ‘MatrixGenerics’ 185s 185s The following objects are masked from ‘package:matrixStats’: 185s 185s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 185s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 185s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 185s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 185s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 185s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 185s colWeightedMeans, colWeightedMedians, colWeightedSds, 185s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 185s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 185s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 185s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 185s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 185s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 185s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 185s rowWeightedSds, rowWeightedVars 185s 185s Loading required package: SummarizedExperiment 185s Loading required package: Biobase 185s Welcome to Bioconductor 185s 185s Vignettes contain introductory material; view with 185s 'browseVignettes()'. To cite Bioconductor, see 185s 'citation("Biobase")', and for packages 'citation("pkgname")'. 185s 185s 185s Attaching package: ‘Biobase’ 185s 185s The following object is masked from ‘package:MatrixGenerics’: 185s 185s rowMedians 185s 185s The following objects are masked from ‘package:matrixStats’: 185s 185s anyMissing, rowMedians 185s 185s Loading required package: Rsamtools 185s Loading required package: Biostrings 185s Loading required package: XVector 185s 185s Attaching package: ‘Biostrings’ 185s 185s The following object is masked from ‘package:base’: 185s 185s strsplit 185s 188s 188s Attaching package: ‘VariantAnnotation’ 188s 188s The following object is masked from ‘package:base’: 188s 188s tabulate 188s 188s Warning message: 188s package ‘VariantAnnotation’ was built under R version 4.3.3 188s > 188s > 189s Other tests are currently unsupported! 189s They will be progressively added. 189s autopkgtest [13:54:04]: test pkg-r-autopkgtest: -----------------------] 190s autopkgtest [13:54:05]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 190s pkg-r-autopkgtest PASS 190s autopkgtest [13:54:05]: @@@@@@@@@@@@@@@@@@@@ summary 190s pkg-r-autopkgtest PASS 201s Creating nova instance adt-noble-arm64-r-bioc-structuralvariantannotation-20240316-135055-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...