0s autopkgtest [17:44:55]: starting date and time: 2024-03-16 17:44:55+0000 0s autopkgtest [17:44:55]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:44:55]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._r_1u76u/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-singlecellexperiment --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-singlecellexperiment-20240316-174455-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 112s autopkgtest [17:46:47]: testbed dpkg architecture: arm64 112s autopkgtest [17:46:47]: testbed apt version: 2.7.12 112s autopkgtest [17:46:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 113s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 115s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 115s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 116s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 116s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 116s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 116s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 116s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 116s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 116s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 116s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 116s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 116s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 119s Fetched 9060 kB in 4s (2356 kB/s) 119s Reading package lists... 122s Reading package lists... 123s Building dependency tree... 123s Reading state information... 123s Calculating upgrade... 124s The following packages will be REMOVED: 124s libglib2.0-0 libssl3 124s The following NEW packages will be installed: 124s libglib2.0-0t64 libssl3t64 xdg-user-dirs 124s The following packages have been kept back: 124s curl 124s The following packages will be upgraded: 124s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 124s ubuntu-minimal ubuntu-standard 124s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 124s Need to get 4613 kB of archives. 124s After this operation, 211 kB of additional disk space will be used. 124s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 124s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 124s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 124s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 124s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 124s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 124s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 124s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 124s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 124s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 128s Fetched 4613 kB in 1s (6778 kB/s) 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 128s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 128s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 128s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 128s udisks2 depends on libglib2.0-0 (>= 2.77.0). 128s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 128s python3-gi depends on libglib2.0-0 (>= 2.77.0). 128s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 128s netplan.io depends on libglib2.0-0 (>= 2.70.0). 128s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 128s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 128s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 128s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 128s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 128s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 128s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 128s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 128s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 128s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 128s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 128s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 128s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 128s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 128s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 128s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 128s fwupd depends on libglib2.0-0 (>= 2.79.0). 128s bolt depends on libglib2.0-0 (>= 2.56.0). 128s 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 128s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 129s Selecting previously unselected package libglib2.0-0t64:arm64. 129s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 129s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 129s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 129s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 129s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 130s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 130s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 130s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 130s wget depends on libssl3 (>= 3.0.0). 130s u-boot-tools depends on libssl3 (>= 3.0.0). 130s tnftp depends on libssl3 (>= 3.0.0). 130s tcpdump depends on libssl3 (>= 3.0.0). 130s systemd-resolved depends on libssl3 (>= 3.0.0). 130s systemd depends on libssl3 (>= 3.0.0). 130s sudo depends on libssl3 (>= 3.0.0). 130s sbsigntool depends on libssl3 (>= 3.0.0). 130s rsync depends on libssl3 (>= 3.0.0). 130s python3-cryptography depends on libssl3 (>= 3.0.0). 130s openssh-server depends on libssl3 (>= 3.0.10). 130s openssh-client depends on libssl3 (>= 3.0.10). 130s mtd-utils depends on libssl3 (>= 3.0.0). 130s mokutil depends on libssl3 (>= 3.0.0). 130s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 130s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 130s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 130s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 130s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 130s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 130s libnvme1 depends on libssl3 (>= 3.0.0). 130s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 130s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 130s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 130s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 130s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 130s kmod depends on libssl3 (>= 3.0.0). 130s dhcpcd-base depends on libssl3 (>= 3.0.0). 130s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 130s 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 131s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 131s Selecting previously unselected package libssl3t64:arm64. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 131s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 131s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 136s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 136s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 138s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 138s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 139s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 139s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 141s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 141s Unpacking ubuntu-minimal (1.536) over (1.535) ... 141s Selecting previously unselected package xdg-user-dirs. 141s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 141s Unpacking xdg-user-dirs (0.18-1) ... 141s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 141s Unpacking ubuntu-standard (1.536) over (1.535) ... 141s Setting up ubuntu-minimal (1.536) ... 141s Setting up xdg-user-dirs (0.18-1) ... 141s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 141s Setting up libtirpc-common (1.3.4+ds-1.1) ... 141s Setting up ubuntu-standard (1.536) ... 141s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 141s No schema files found: doing nothing. 142s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 142s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 142s Setting up openssl (3.0.13-0ubuntu1) ... 142s Setting up readline-common (8.2-3.1) ... 142s Processing triggers for man-db (2.12.0-3) ... 143s Processing triggers for install-info (7.1-3) ... 143s Processing triggers for libc-bin (2.39-0ubuntu2) ... 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 144s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 145s sh: Attempting to set up Debian/Ubuntu apt sources automatically 145s sh: Distribution appears to be Ubuntu 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s eatmydata is already the newest version (131-1). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Reading package lists... 147s Building dependency tree... 147s Reading state information... 148s dbus is already the newest version (1.14.10-4ubuntu1). 148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s rng-tools-debian is already the newest version (2.4). 149s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s The following packages will be REMOVED: 150s cloud-init* python3-configobj* python3-debconf* 150s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 150s After this operation, 3252 kB disk space will be freed. 150s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 150s Removing cloud-init (24.1.1-0ubuntu1) ... 151s Removing python3-configobj (5.0.8-3) ... 152s Removing python3-debconf (1.5.86) ... 152s Processing triggers for man-db (2.12.0-3) ... 152s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 152s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 153s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 153s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 153s invoke-rc.d: policy-rc.d denied execution of try-restart. 153s Reading package lists... 154s Building dependency tree... 154s Reading state information... 154s linux-generic is already the newest version (6.8.0-11.11+1). 154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 155s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 155s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 155s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 157s Reading package lists... 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 158s Calculating upgrade... 158s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 158s Reading package lists... 159s Building dependency tree... 159s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 160s autopkgtest [17:47:35]: rebooting testbed after setup commands that affected boot 333s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 340s autopkgtest [17:50:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 344s autopkgtest [17:50:39]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-singlecellexperiment 347s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (dsc) [2345 B] 347s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (tar) [59.4 kB] 347s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-singlecellexperiment 1.24.0+ds-1 (diff) [2492 B] 350s gpgv: Signature made Thu Nov 30 14:07:57 2023 UTC 350s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 350s gpgv: issuer "tillea@rki.de" 350s gpgv: Can't check signature: No public key 350s dpkg-source: warning: cannot verify inline signature for ./r-bioc-singlecellexperiment_1.24.0+ds-1.dsc: no acceptable signature found 352s autopkgtest [17:50:47]: testing package r-bioc-singlecellexperiment version 1.24.0+ds-1 353s autopkgtest [17:50:48]: build not needed 354s autopkgtest [17:50:49]: test pkg-r-autopkgtest: preparing testbed 356s Reading package lists... 356s Building dependency tree... 356s Reading state information... 356s Starting pkgProblemResolver with broken count: 0 357s Starting 2 pkgProblemResolver with broken count: 0 357s Done 357s The following additional packages will be installed: 357s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 357s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 357s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 357s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 357s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 357s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 357s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 357s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 357s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 357s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 357s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 357s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 357s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 357s libjs-highlight.js libjs-jquery libjs-jquery-datatables 357s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 357s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 357s libjs-popper.js libjs-prettify libjs-sifter.js 357s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 357s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 357s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 357s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 357s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 357s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 357s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 357s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 357s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 357s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 357s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 357s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 357s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 357s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 357s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 357s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 357s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 357s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 357s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 357s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 357s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 357s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 357s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 357s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 357s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 357s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 357s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 357s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 357s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 357s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 357s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 357s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 357s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 357s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 357s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 357s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 357s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 357s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 357s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 357s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 357s r-cran-rprojroot r-cran-rsqlite r-cran-rtsne r-cran-sass r-cran-shiny 357s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 357s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 357s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 357s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 357s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 357s x11-common xdg-utils zip zlib1g-dev 357s Suggested packages: 357s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 357s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 357s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 357s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 357s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 357s libboost-context1.83-dev libboost-contract1.83-dev 357s libboost-coroutine1.83-dev libboost-date-time1.83-dev 357s libboost-exception1.83-dev libboost-fiber1.83-dev 357s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 357s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 357s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 357s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 357s libboost-numpy1.83-dev libboost-program-options1.83-dev 357s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 357s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 357s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 357s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 357s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 357s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 357s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 357s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 357s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 357s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 357s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 357s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 357s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph 357s r-bioc-variantannotation r-bioc-all r-bioc-affy r-bioc-deseq2 357s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 357s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 357s r-cran-webmockr r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter 357s r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-gviz 357s r-cran-r.utils r-bioc-edger r-cran-markdown r-bioc-dexseq 357s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 357s r-cran-covr r-cran-spelling r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 357s r-cran-getopt r-cran-formattable r-cran-ggplot2 r-cran-nanotime 357s r-cran-palmerpenguins r-cran-scales r-cran-survival r-cran-units 357s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench 357s r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 357s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 357s hintview texlive-latex-base-doc wp2latex 357s Recommended packages: 357s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 357s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-rstudioapi 357s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 357s r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery 357s r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-scales 357s r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh r-cran-broom 357s r-cran-rmysql r-cran-future w3m | www-browser r-cran-unitizer r-cran-rsvg 357s r-cran-survival r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg 357s r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 357s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 357s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 357s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 357s r-cran-pingr r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest 357s r-cran-gert r-cran-rvest r-cran-irlba r-cran-data.table r-cran-formattable 357s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 357s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 357s x11-xserver-utils 357s The following NEW packages will be installed: 357s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 357s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 357s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 357s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 357s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 357s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 357s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 357s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 357s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 357s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 357s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 357s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 357s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 357s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 357s libjs-highlight.js libjs-jquery libjs-jquery-datatables 357s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 357s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 357s libjs-popper.js libjs-prettify libjs-sifter.js 357s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 357s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 357s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 357s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 357s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 357s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 357s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 357s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 357s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 357s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 357s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 357s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 357s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 357s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 357s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 357s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 357s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 357s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 357s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 357s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 357s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 357s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 357s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 357s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 357s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 357s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 357s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 357s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 357s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 357s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 357s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 357s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 357s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 357s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 357s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 357s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 357s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 357s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 357s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 357s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 357s r-cran-rprojroot r-cran-rsqlite r-cran-rtsne r-cran-sass r-cran-shiny 357s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 357s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 357s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 357s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 357s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 357s x11-common xdg-utils zip zlib1g-dev 358s 0 upgraded, 303 newly installed, 0 to remove and 0 not upgraded. 358s Need to get 425 MB/425 MB of archives. 358s After this operation, 1351 MB of additional disk space will be used. 358s Get:1 /tmp/autopkgtest.EZeunC/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [800 B] 358s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 358s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 358s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 358s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 358s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 358s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 358s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 358s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 358s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 358s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 359s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 359s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 359s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 359s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 359s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 359s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 359s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 359s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 359s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 359s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 359s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 359s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 359s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 359s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 359s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 359s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 359s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 359s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 359s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 360s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 360s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 360s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 360s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 360s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 360s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 360s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 360s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 360s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 360s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 360s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 360s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 360s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 360s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 360s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 360s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 360s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 360s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 360s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 360s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 360s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 360s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 360s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 360s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 360s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 360s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 360s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 360s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 361s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 361s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 361s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 361s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 361s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 361s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 361s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 361s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 361s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 361s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 361s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 361s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 361s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 361s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 361s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 361s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 361s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 361s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 361s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 361s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 361s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 361s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 361s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 361s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 361s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 361s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 361s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 361s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 361s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 361s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 361s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 361s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 361s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 361s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 361s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 361s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 361s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 361s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 361s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 361s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 361s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 361s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 361s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 361s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 361s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 362s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 362s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 362s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 362s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 362s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 362s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 362s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 362s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 362s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 362s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 362s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 362s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 362s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 362s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 362s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 362s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 362s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 362s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 362s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 362s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 362s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 362s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 362s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 362s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 362s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 362s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 362s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 362s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 362s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 362s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 362s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 362s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 362s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 362s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 362s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 363s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 363s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 363s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 363s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 363s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 363s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 363s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 364s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 364s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 364s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 364s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 364s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 364s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 364s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 365s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 365s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 365s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 365s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 365s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 365s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 365s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 365s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 365s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 365s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 365s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 365s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 365s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 365s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 365s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 365s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 365s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 365s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 365s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 365s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 365s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 365s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 365s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 365s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 365s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 365s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 365s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 365s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 365s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 365s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 365s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 365s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 365s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 366s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 366s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 366s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 366s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 366s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 366s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 366s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 366s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 366s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 366s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 366s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 366s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 366s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 366s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 367s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 367s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 367s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 367s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 367s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 367s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 367s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 367s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 367s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 367s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 367s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 367s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 367s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 367s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 367s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 367s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 367s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 367s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 367s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 367s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 367s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 367s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 367s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 367s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 367s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 368s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 368s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 368s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 368s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 368s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 368s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 368s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 368s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 368s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 368s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 368s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 368s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 368s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 368s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 368s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 368s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 368s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 368s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 368s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 368s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 368s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 368s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 368s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 368s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 368s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 368s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 368s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 368s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 368s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 368s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 368s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 368s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 368s Get:257 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 368s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 369s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 369s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 369s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 372s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 372s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 372s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 372s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 372s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 372s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 372s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 372s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 372s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 373s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 373s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 373s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 373s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 373s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 373s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 373s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 373s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 373s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 373s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 373s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 373s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 373s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 373s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 373s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 373s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 373s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 373s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 373s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 373s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 373s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 373s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 373s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 373s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 373s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 373s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 373s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 373s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 373s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 373s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 373s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rtsne arm64 0.17-1 [105 kB] 373s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 373s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 377s Preconfiguring packages ... 378s Fetched 425 MB in 16s (26.4 MB/s) 378s Selecting previously unselected package libc-dev-bin. 379s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 379s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 379s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 379s Selecting previously unselected package linux-libc-dev:arm64. 379s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 379s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 379s Selecting previously unselected package libcrypt-dev:arm64. 379s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 379s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 379s Selecting previously unselected package libtirpc-dev:arm64. 379s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 379s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 379s Selecting previously unselected package libnsl-dev:arm64. 379s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 379s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 379s Selecting previously unselected package rpcsvc-proto. 379s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 379s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 379s Selecting previously unselected package libc6-dev:arm64. 380s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 380s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 380s Selecting previously unselected package libisl23:arm64. 380s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 380s Unpacking libisl23:arm64 (0.26-3) ... 380s Selecting previously unselected package libmpc3:arm64. 380s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 380s Unpacking libmpc3:arm64 (1.3.1-1) ... 380s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 380s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 380s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 380s Selecting previously unselected package cpp-13. 380s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 380s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 380s Selecting previously unselected package cpp-aarch64-linux-gnu. 381s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 381s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 381s Selecting previously unselected package cpp. 381s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 381s Unpacking cpp (4:13.2.0-7ubuntu1) ... 381s Selecting previously unselected package libcc1-0:arm64. 381s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libgomp1:arm64. 381s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libitm1:arm64. 381s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libatomic1:arm64. 381s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libasan8:arm64. 381s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package liblsan0:arm64. 381s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libtsan2:arm64. 381s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libubsan1:arm64. 381s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libhwasan0:arm64. 381s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 381s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 381s Selecting previously unselected package libgcc-13-dev:arm64. 381s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 381s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 382s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 382s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 382s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 382s Selecting previously unselected package gcc-13. 382s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 382s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 382s Selecting previously unselected package gcc-aarch64-linux-gnu. 382s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 382s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 382s Selecting previously unselected package gcc. 382s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 382s Unpacking gcc (4:13.2.0-7ubuntu1) ... 382s Selecting previously unselected package libstdc++-13-dev:arm64. 382s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 382s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 383s Selecting previously unselected package g++-13-aarch64-linux-gnu. 383s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 383s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 383s Selecting previously unselected package g++-13. 383s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 383s Unpacking g++-13 (13.2.0-17ubuntu2) ... 383s Selecting previously unselected package g++-aarch64-linux-gnu. 383s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 383s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 383s Selecting previously unselected package g++. 383s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 383s Unpacking g++ (4:13.2.0-7ubuntu1) ... 383s Selecting previously unselected package build-essential. 383s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 383s Unpacking build-essential (12.10ubuntu1) ... 383s Selecting previously unselected package dctrl-tools. 383s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 383s Unpacking dctrl-tools (2.24-3build2) ... 383s Selecting previously unselected package fonts-dejavu-mono. 383s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 383s Unpacking fonts-dejavu-mono (2.37-8) ... 383s Selecting previously unselected package fonts-dejavu-core. 383s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 383s Unpacking fonts-dejavu-core (2.37-8) ... 383s Selecting previously unselected package fontconfig-config. 383s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 384s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 384s Selecting previously unselected package libfontconfig1:arm64. 384s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 384s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 384s Selecting previously unselected package fontconfig. 384s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 384s Unpacking fontconfig (2.15.0-1ubuntu1) ... 384s Selecting previously unselected package fonts-font-awesome. 384s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 384s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 384s Selecting previously unselected package fonts-glyphicons-halflings. 384s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 384s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 384s Selecting previously unselected package fonts-lmodern. 384s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 384s Unpacking fonts-lmodern (2.005-1) ... 384s Selecting previously unselected package fonts-mathjax. 384s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 384s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 385s Selecting previously unselected package libgfortran5:arm64. 385s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libgfortran-13-dev:arm64. 385s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 385s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 385s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 385s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gfortran-13. 385s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 385s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 386s Selecting previously unselected package gfortran-aarch64-linux-gnu. 386s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 386s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 386s Selecting previously unselected package gfortran. 386s Preparing to unpack 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Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 387s Selecting previously unselected package libblas3:arm64. 387s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 387s Unpacking libblas3:arm64 (3.12.0-3) ... 387s Selecting previously unselected package libblas-dev:arm64. 387s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 387s Unpacking libblas-dev:arm64 (3.12.0-3) ... 387s Selecting previously unselected package libboost1.83-dev:arm64. 387s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 387s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 389s Selecting previously unselected package libboost-dev:arm64. 389s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 389s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 389s Selecting previously unselected package libbz2-dev:arm64. 389s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 389s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 389s Selecting previously unselected package libpixman-1-0:arm64. 389s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 389s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 389s Selecting previously unselected package libxcb-render0:arm64. 389s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 389s Unpacking libxcb-render0:arm64 (1.15-1) ... 389s Selecting previously unselected package libxcb-shm0:arm64. 389s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 389s Unpacking libxcb-shm0:arm64 (1.15-1) ... 389s Selecting previously unselected package libxrender1:arm64. 389s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 389s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 389s Selecting previously unselected package libcairo2:arm64. 389s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 389s Unpacking libcairo2:arm64 (1.18.0-1) ... 389s Selecting previously unselected package libdatrie1:arm64. 389s Preparing to unpack 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unselected package libjpeg-dev:arm64. 391s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 391s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 391s Selecting previously unselected package libjs-bootstrap. 391s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 391s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 391s Selecting previously unselected package libjs-popper.js. 391s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 391s Unpacking libjs-popper.js (1.16.1+ds-6) ... 391s Selecting previously unselected package libjs-bootstrap4. 391s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 391s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 391s Selecting previously unselected package libjs-d3. 391s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 391s Unpacking libjs-d3 (3.5.17-4) ... 391s Selecting previously unselected package libjs-es5-shim. 391s Preparing to unpack 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unselected package libjs-sifter.js. 392s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 392s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 392s Selecting previously unselected package libjs-microplugin.js. 392s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 392s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 392s Selecting previously unselected package libjs-jquery-selectize.js. 392s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 392s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 392s Selecting previously unselected package libjs-jquery-ui. 392s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 392s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 392s Selecting previously unselected package libjs-json. 392s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 392s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 392s Selecting previously unselected package libjs-lunr. 392s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 392s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 392s Selecting previously unselected package libjs-prettify. 392s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 392s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 392s Selecting previously unselected package libkpathsea6:arm64. 392s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 392s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 392s Selecting previously unselected package liblapack3:arm64. 392s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 392s Unpacking liblapack3:arm64 (3.12.0-3) ... 392s Selecting previously unselected package liblapack-dev:arm64. 392s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 392s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 392s Selecting previously unselected package liblerc4:arm64. 393s Preparing to unpack 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Selecting previously unselected package libpcre2-32-0:arm64. 394s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 394s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 394s Selecting previously unselected package libpcre2-posix3:arm64. 394s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 394s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 394s Selecting previously unselected package libpcre2-dev:arm64. 394s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 394s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 394s Selecting previously unselected package libpkgconf3:arm64. 394s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 394s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 394s Selecting previously unselected package zlib1g-dev:arm64. 395s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 395s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 395s Selecting previously unselected package libpng-dev:arm64. 395s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 395s Unpacking libpng-dev:arm64 (1.6.43-1) ... 395s Selecting previously unselected package libpotrace0:arm64. 395s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 395s Unpacking libpotrace0:arm64 (1.16-2) ... 395s Selecting previously unselected package libptexenc1:arm64. 395s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 395s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 395s Selecting previously unselected package libreadline-dev:arm64. 395s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 395s Unpacking libreadline-dev:arm64 (8.2-3) ... 395s Selecting previously unselected package libsharpyuv0:arm64. 396s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 396s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 396s Selecting previously unselected package libsm6:arm64. 396s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 396s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 396s Selecting previously unselected package libsynctex2:arm64. 396s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 396s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 396s Selecting previously unselected package libtcl8.6:arm64. 396s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 396s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 396s Selecting previously unselected package libteckit0:arm64. 396s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 396s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 396s Selecting previously unselected package libtexlua53-5:arm64. 396s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 396s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 396s Selecting previously unselected package libjbig0:arm64. 396s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 396s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 396s Selecting previously unselected package libwebp7:arm64. 396s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 396s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 396s Selecting previously unselected package libtiff6:arm64. 396s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 396s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 396s Selecting previously unselected package libxft2:arm64. 396s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 396s Unpacking libxft2:arm64 (2.3.6-1) ... 396s Selecting previously unselected package libxss1:arm64. 397s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 397s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 397s Selecting previously unselected package libtk8.6:arm64. 397s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 397s Unpacking libtk8.6:arm64 (8.6.13-2) ... 397s Selecting previously unselected package libxt6:arm64. 397s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 397s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 397s Selecting previously unselected package libxmu6:arm64. 397s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 397s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 397s Selecting previously unselected package libxpm4:arm64. 397s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 397s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 397s Selecting previously unselected package libxaw7:arm64. 397s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 397s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 397s Selecting previously unselected package libxi6:arm64. 398s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 398s Unpacking libxi6:arm64 (2:1.8.1-1) ... 398s Selecting previously unselected package libzzip-0-13:arm64. 398s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 398s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 398s Selecting previously unselected package zip. 398s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 398s Unpacking zip (3.0-13) ... 398s Selecting previously unselected package unzip. 398s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 398s Unpacking unzip (6.0-28ubuntu3) ... 398s Selecting previously unselected package xdg-utils. 399s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 399s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 399s Selecting previously unselected package r-base-core. 399s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 399s Unpacking r-base-core (4.3.2-1build1) ... 399s Selecting previously unselected package r-cran-littler. 399s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 399s Unpacking r-cran-littler (0.3.19-1) ... 399s Selecting previously unselected package littler. 399s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 399s Unpacking littler (0.3.19-1) ... 399s Selecting previously unselected package node-bootstrap-sass. 399s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 399s Unpacking node-bootstrap-sass (3.4.3-2) ... 399s Selecting previously unselected package node-html5shiv. 399s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 399s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 399s Selecting previously unselected package node-normalize.css. 399s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 399s Unpacking node-normalize.css (8.0.1-5) ... 399s Selecting previously unselected package pandoc-data. 399s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 399s Unpacking pandoc-data (3.1.3-1) ... 399s Selecting previously unselected package pandoc. 399s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 399s Unpacking pandoc (3.1.3+ds-2) ... 400s Selecting previously unselected package pkgconf-bin. 400s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 400s Unpacking pkgconf-bin (1.8.1-2) ... 400s Selecting previously unselected package pkgconf:arm64. 401s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 401s Unpacking pkgconf:arm64 (1.8.1-2) ... 401s Selecting previously unselected package pkg-config:arm64. 401s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 401s Unpacking pkg-config:arm64 (1.8.1-2) ... 401s Selecting previously unselected package liblzma-dev:arm64. 401s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 401s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 401s Selecting previously unselected package r-base-dev. 401s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 401s Unpacking r-base-dev (4.3.2-1build1) ... 401s Selecting previously unselected package pkg-r-autopkgtest. 401s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 401s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 401s Selecting previously unselected package r-bioc-biocgenerics. 401s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 401s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 401s Selecting previously unselected package r-bioc-biobase. 401s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 401s Unpacking r-bioc-biobase (2.62.0-1) ... 401s Selecting previously unselected package r-bioc-s4vectors. 401s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 401s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 401s Selecting previously unselected package r-bioc-iranges. 401s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 401s Unpacking r-bioc-iranges (2.36.0-1) ... 401s Selecting previously unselected package r-cran-dbi. 401s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 401s Unpacking r-cran-dbi (1.2.2-1) ... 401s Selecting previously unselected package r-cran-bit. 401s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 401s Unpacking r-cran-bit (4.0.5-1) ... 401s Selecting previously unselected package r-cran-bit64. 402s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 402s Unpacking r-cran-bit64 (4.0.5-1) ... 402s Selecting previously unselected package r-cran-rlang. 402s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 402s Unpacking r-cran-rlang (1.1.3-1) ... 402s Selecting previously unselected package r-cran-cli. 402s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 402s Unpacking r-cran-cli (3.6.2-1) ... 402s Selecting previously unselected package r-cran-glue. 402s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 402s Unpacking r-cran-glue (1.7.0-1) ... 402s Selecting previously unselected package r-cran-lifecycle. 402s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 402s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 402s Selecting previously unselected package r-cran-vctrs. 402s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 402s Unpacking r-cran-vctrs (0.6.5-1) ... 402s Selecting previously unselected package r-cran-blob. 402s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 402s Unpacking r-cran-blob (1.2.4-1) ... 402s Selecting previously unselected package r-cran-fastmap. 402s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 402s Unpacking r-cran-fastmap (1.1.1-1) ... 402s Selecting previously unselected package r-cran-cachem. 402s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 402s Unpacking r-cran-cachem (1.0.8-1) ... 402s Selecting previously unselected package r-cran-memoise. 402s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 402s Unpacking r-cran-memoise (2.0.1-1) ... 402s Selecting previously unselected package r-cran-pkgconfig. 402s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 402s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 402s Selecting previously unselected package r-cran-plogr. 402s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 402s Unpacking r-cran-plogr (0.2.0-3build1) ... 402s Selecting previously unselected package r-cran-cpp11. 402s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 402s Unpacking r-cran-cpp11 (0.4.7-1) ... 402s Selecting previously unselected package r-cran-rsqlite. 403s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 403s Unpacking r-cran-rsqlite (2.3.4-1) ... 403s Selecting previously unselected package r-cran-curl. 403s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 403s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 403s Selecting previously unselected package r-cran-jsonlite. 403s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 403s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 403s Selecting previously unselected package r-cran-mime. 403s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 403s Unpacking r-cran-mime (0.12-1) ... 403s Selecting previously unselected package r-cran-sys. 403s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 403s Unpacking r-cran-sys (3.4.2-1) ... 403s Selecting previously unselected package r-cran-askpass. 403s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 403s Unpacking r-cran-askpass (1.2.0-1) ... 403s Selecting previously unselected package r-cran-openssl. 403s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 403s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 403s Selecting previously unselected package r-cran-r6. 403s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 403s Unpacking r-cran-r6 (2.5.1-1) ... 403s Selecting previously unselected package r-cran-httr. 403s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 403s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 403s Selecting previously unselected package r-cran-png. 403s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 403s Unpacking r-cran-png (0.1-8-1) ... 403s Selecting previously unselected package r-bioc-zlibbioc. 403s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 403s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 403s Selecting previously unselected package r-bioc-xvector. 403s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 403s Unpacking r-bioc-xvector (0.42.0-1) ... 403s Selecting previously unselected package r-cran-bitops. 403s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 403s Unpacking r-cran-bitops (1.0-7-1) ... 403s Selecting previously unselected package r-cran-rcurl. 403s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 403s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 403s Selecting previously unselected package r-bioc-genomeinfodbdata. 403s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 403s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 403s Selecting previously unselected package r-bioc-genomeinfodb. 403s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 403s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 404s Selecting previously unselected package r-cran-crayon. 404s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 404s Unpacking r-cran-crayon (1.5.2-1) ... 404s Selecting previously unselected package r-bioc-biostrings. 404s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 404s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 404s Selecting previously unselected package r-bioc-keggrest. 404s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 404s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 404s Selecting previously unselected package r-bioc-annotationdbi. 404s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 404s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 404s Selecting previously unselected package r-bioc-genomicranges. 404s Preparing to unpack .../189-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 404s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 404s Selecting previously unselected package r-cran-lazyeval. 404s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 404s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 404s Selecting previously unselected package r-bioc-annotationfilter. 404s Preparing to unpack .../191-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 404s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 404s Selecting previously unselected package r-cran-generics. 404s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 404s Unpacking r-cran-generics (0.1.3-1) ... 404s Selecting previously unselected package r-cran-magrittr. 404s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_arm64.deb ... 404s Unpacking r-cran-magrittr (2.0.3-1) ... 404s Selecting previously unselected package r-cran-fansi. 404s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_arm64.deb ... 404s Unpacking r-cran-fansi (1.0.5-1) ... 405s Selecting previously unselected package r-cran-utf8. 405s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_arm64.deb ... 405s Unpacking r-cran-utf8 (1.2.4-1) ... 405s Selecting previously unselected package r-cran-pillar. 405s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 405s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 405s Selecting previously unselected package r-cran-tibble. 405s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 405s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 405s Selecting previously unselected package r-cran-withr. 405s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 405s Unpacking r-cran-withr (2.5.0-1) ... 405s Selecting previously unselected package r-cran-tidyselect. 405s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 405s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 405s Selecting previously unselected package r-cran-dplyr. 405s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_arm64.deb ... 405s Unpacking r-cran-dplyr (1.1.4-1) ... 405s Selecting previously unselected package r-cran-purrr. 405s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_arm64.deb ... 405s Unpacking r-cran-purrr (1.0.2-1) ... 405s Selecting previously unselected package r-cran-stringi. 405s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_arm64.deb ... 405s Unpacking r-cran-stringi (1.8.3-1) ... 405s Selecting previously unselected package r-cran-stringr. 405s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 405s Unpacking r-cran-stringr (1.5.1-1) ... 405s Selecting previously unselected package r-cran-tidyr. 405s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_arm64.deb ... 405s Unpacking r-cran-tidyr (1.3.1-1) ... 405s Selecting previously unselected package r-cran-dbplyr. 405s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 405s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 405s Selecting previously unselected package r-cran-filelock. 405s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_arm64.deb ... 405s Unpacking r-cran-filelock (1.0.3-1) ... 405s Selecting previously unselected package r-bioc-biocfilecache. 405s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 405s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 405s Selecting previously unselected package r-cran-biocmanager. 405s Preparing to unpack .../208-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 405s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 405s Selecting previously unselected package r-bioc-biocversion. 405s Preparing to unpack .../209-r-bioc-biocversion_3.18.1-1_all.deb ... 405s Unpacking r-bioc-biocversion (3.18.1-1) ... 405s Selecting previously unselected package r-cran-rappdirs. 406s Preparing to unpack .../210-r-cran-rappdirs_0.3.3-1_arm64.deb ... 406s Unpacking r-cran-rappdirs (0.3.3-1) ... 406s Selecting previously unselected package r-cran-yaml. 406s Preparing to unpack .../211-r-cran-yaml_2.3.8-1_arm64.deb ... 406s Unpacking r-cran-yaml (2.3.8-1) ... 406s Selecting previously unselected package r-cran-pkgkitten. 406s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 406s Unpacking r-cran-pkgkitten (0.2.3-1) ... 406s Selecting previously unselected package r-cran-rcpp. 406s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_arm64.deb ... 406s Unpacking r-cran-rcpp (1.0.12-1) ... 406s Selecting previously unselected package r-cran-later. 406s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 406s Unpacking r-cran-later (1.3.2+dfsg-1) ... 406s Selecting previously unselected package r-cran-promises. 406s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 406s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 406s Selecting previously unselected package r-cran-httpuv. 406s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 406s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 406s Selecting previously unselected package r-cran-xtable. 406s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 406s Unpacking r-cran-xtable (1:1.8-4-2) ... 406s Selecting previously unselected package r-cran-base64enc. 406s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 406s Unpacking r-cran-base64enc (0.1-3-3) ... 406s Selecting previously unselected package r-cran-digest. 406s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 406s Unpacking r-cran-digest (0.6.34-1) ... 406s Selecting previously unselected package r-cran-ellipsis. 406s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 406s Unpacking r-cran-ellipsis (0.3.2-2) ... 406s Selecting previously unselected package r-cran-htmltools. 406s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 406s Unpacking r-cran-htmltools (0.5.7-1) ... 406s Selecting previously unselected package r-cran-fontawesome. 406s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 406s Unpacking r-cran-fontawesome (0.5.2-1) ... 406s Selecting previously unselected package r-cran-sourcetools. 406s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 406s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 406s Selecting previously unselected package r-cran-commonmark. 406s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_arm64.deb ... 406s Unpacking r-cran-commonmark (1.9.1-1) ... 406s Selecting previously unselected package r-cran-jquerylib. 406s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 406s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 406s Selecting previously unselected package r-cran-fs. 406s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 406s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 406s Selecting previously unselected package r-cran-sass. 406s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 406s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 406s Selecting previously unselected package r-cran-bslib. 406s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 406s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 407s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 407s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 407s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 407s Selecting previously unselected package r-cran-shiny. 407s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 407s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 407s Selecting previously unselected package r-cran-evaluate. 407s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 407s Unpacking r-cran-evaluate (0.23-1) ... 407s Selecting previously unselected package r-cran-xfun. 407s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 407s Unpacking r-cran-xfun (0.41+dfsg-1) ... 407s Selecting previously unselected package r-cran-highr. 407s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 407s Unpacking r-cran-highr (0.10+dfsg-1) ... 407s Selecting previously unselected package libjs-mathjax. 407s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 407s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 408s Selecting previously unselected package r-cran-knitr. 408s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 408s Unpacking r-cran-knitr (1.45+dfsg-1) ... 408s Selecting previously unselected package r-cran-tinytex. 408s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 408s Unpacking r-cran-tinytex (0.49-1) ... 408s Selecting previously unselected package libjs-modernizr. 408s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 408s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 408s Selecting previously unselected package r-cran-rmarkdown. 408s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 408s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 408s Selecting previously unselected package r-cran-htmlwidgets. 408s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 408s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 408s Selecting previously unselected package r-cran-crosstalk. 408s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 408s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 408s Selecting previously unselected package r-cran-dt. 408s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 408s Unpacking r-cran-dt (0.31+dfsg-1) ... 408s Selecting previously unselected package r-bioc-interactivedisplaybase. 409s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 409s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 409s Selecting previously unselected package r-bioc-annotationhub. 409s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 409s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 409s Selecting previously unselected package r-bioc-biocio. 409s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 409s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 409s Selecting previously unselected package r-cran-formatr. 409s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 409s Unpacking r-cran-formatr (1.14-1) ... 409s Selecting previously unselected package r-cran-lambda.r. 409s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 409s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 409s Selecting previously unselected package r-cran-futile.options. 409s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 409s Unpacking r-cran-futile.options (1.0.1-3build1) ... 409s Selecting previously unselected package r-cran-futile.logger. 409s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 409s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 409s Selecting previously unselected package r-cran-snow. 409s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 409s Unpacking r-cran-snow (1:0.4.4-2) ... 409s Selecting previously unselected package r-cran-codetools. 409s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 409s Unpacking r-cran-codetools (0.2-19-1) ... 409s Selecting previously unselected package r-cran-bh. 409s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 409s Unpacking r-cran-bh (1.84.0-1) ... 409s Selecting previously unselected package r-bioc-biocparallel. 409s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 409s Unpacking r-bioc-biocparallel (1.36.0-1) ... 409s Selecting previously unselected package r-cran-bookdown. 409s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 409s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 409s Selecting previously unselected package tex-common. 409s Preparing to unpack .../254-tex-common_6.18_all.deb ... 409s Unpacking tex-common (6.18) ... 409s Selecting previously unselected package t1utils. 409s Preparing to unpack .../255-t1utils_1.41-4build2_arm64.deb ... 409s Unpacking t1utils (1.41-4build2) ... 409s Selecting previously unselected package texlive-binaries. 409s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 409s Unpacking texlive-binaries (2023.20230311.66589-9) ... 410s Selecting previously unselected package texlive-base. 410s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 410s Unpacking texlive-base (2023.20240207-1) ... 411s Selecting previously unselected package texlive-latex-base. 411s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 411s Unpacking texlive-latex-base (2023.20240207-1) ... 411s Selecting previously unselected package texlive-bibtex-extra. 411s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 411s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 414s Selecting previously unselected package r-bioc-biocstyle. 414s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 414s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 414s Selecting previously unselected package r-cran-xml. 414s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 414s Unpacking r-cran-xml (3.99-0.16.1-1) ... 414s Selecting previously unselected package r-cran-hms. 414s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 414s Unpacking r-cran-hms (1.1.3-1) ... 414s Selecting previously unselected package r-cran-prettyunits. 414s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 414s Unpacking r-cran-prettyunits (1.2.0-1) ... 414s Selecting previously unselected package r-cran-progress. 414s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 414s Unpacking r-cran-progress (1.2.3-1) ... 414s Selecting previously unselected package r-cran-xml2. 414s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_arm64.deb ... 414s Unpacking r-cran-xml2 (1.3.6-1) ... 414s Selecting previously unselected package r-bioc-biomart. 414s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 414s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 414s Selecting previously unselected package r-cran-lattice. 414s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_arm64.deb ... 414s Unpacking r-cran-lattice (0.22-5-1) ... 414s Selecting previously unselected package r-cran-matrix. 414s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_arm64.deb ... 414s Unpacking r-cran-matrix (1.6-5-1) ... 414s Selecting previously unselected package r-cran-matrixstats. 414s Preparing to unpack .../269-r-cran-matrixstats_1.2.0-1_arm64.deb ... 414s Unpacking r-cran-matrixstats (1.2.0-1) ... 414s Selecting previously unselected package r-bioc-matrixgenerics. 414s Preparing to unpack .../270-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 414s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 414s Selecting previously unselected package r-cran-abind. 414s Preparing to unpack .../271-r-cran-abind_1.4-5-2_all.deb ... 414s Unpacking r-cran-abind (1.4-5-2) ... 414s Selecting previously unselected package r-bioc-s4arrays. 414s Preparing to unpack .../272-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 414s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 414s Selecting previously unselected package r-bioc-sparsearray. 414s Preparing to unpack .../273-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 414s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 414s Selecting previously unselected package r-bioc-delayedarray. 414s Preparing to unpack .../274-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 414s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 415s Selecting previously unselected package r-bioc-rhtslib. 415s Preparing to unpack .../275-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 415s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 415s Selecting previously unselected package r-bioc-rsamtools. 415s Preparing to unpack .../276-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 415s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 415s Selecting previously unselected package r-bioc-summarizedexperiment. 415s Preparing to unpack .../277-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 415s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 415s Selecting previously unselected package r-bioc-genomicalignments. 415s Preparing to unpack .../278-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 415s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 415s Selecting previously unselected package r-cran-rjson. 415s Preparing to unpack .../279-r-cran-rjson_0.2.21-1_arm64.deb ... 415s Unpacking r-cran-rjson (0.2.21-1) ... 415s Selecting previously unselected package r-cran-restfulr. 416s Preparing to unpack .../280-r-cran-restfulr_0.0.15-1_arm64.deb ... 416s Unpacking r-cran-restfulr (0.0.15-1) ... 416s Selecting previously unselected package r-bioc-rtracklayer. 416s Preparing to unpack .../281-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 416s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 416s Selecting previously unselected package r-bioc-genomicfeatures. 416s Preparing to unpack .../282-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 416s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 416s Selecting previously unselected package r-bioc-protgenerics. 416s Preparing to unpack .../283-r-bioc-protgenerics_1.34.0-1_all.deb ... 416s Unpacking r-bioc-protgenerics (1.34.0-1) ... 416s Selecting previously unselected package r-bioc-ensembldb. 416s Preparing to unpack .../284-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 416s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 416s Selecting previously unselected package r-bioc-experimenthub. 416s Preparing to unpack .../285-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 416s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 416s Selecting previously unselected package r-bioc-singlecellexperiment. 416s Preparing to unpack .../286-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 416s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 416s Selecting previously unselected package r-bioc-scrnaseq. 416s Preparing to unpack .../287-r-bioc-scrnaseq_2.16.0+ds-1_all.deb ... 416s Unpacking r-bioc-scrnaseq (2.16.0+ds-1) ... 416s Selecting previously unselected package r-cran-brio. 416s Preparing to unpack .../288-r-cran-brio_1.1.4-1_arm64.deb ... 416s Unpacking r-cran-brio (1.1.4-1) ... 416s Selecting previously unselected package r-cran-ps. 416s Preparing to unpack .../289-r-cran-ps_1.7.6-1_arm64.deb ... 416s Unpacking r-cran-ps (1.7.6-1) ... 416s Selecting previously unselected package r-cran-processx. 416s Preparing to unpack .../290-r-cran-processx_3.8.3-1_arm64.deb ... 416s Unpacking r-cran-processx (3.8.3-1) ... 417s Selecting previously unselected package r-cran-callr. 417s Preparing to unpack .../291-r-cran-callr_3.7.3-2_all.deb ... 417s Unpacking r-cran-callr (3.7.3-2) ... 417s Selecting previously unselected package r-cran-desc. 417s Preparing to unpack .../292-r-cran-desc_1.4.3-1_all.deb ... 417s Unpacking r-cran-desc (1.4.3-1) ... 417s Selecting previously unselected package r-cran-diffobj. 417s Preparing to unpack .../293-r-cran-diffobj_0.3.5-1_arm64.deb ... 417s Unpacking r-cran-diffobj (0.3.5-1) ... 417s Selecting previously unselected package r-cran-pkgbuild. 417s Preparing to unpack .../294-r-cran-pkgbuild_1.4.3-1_all.deb ... 417s Unpacking r-cran-pkgbuild (1.4.3-1) ... 417s Selecting previously unselected package r-cran-rprojroot. 417s Preparing to unpack .../295-r-cran-rprojroot_2.0.4-1_all.deb ... 417s Unpacking r-cran-rprojroot (2.0.4-1) ... 417s Selecting previously unselected package r-cran-pkgload. 417s Preparing to unpack .../296-r-cran-pkgload_1.3.4-1_all.deb ... 417s Unpacking r-cran-pkgload (1.3.4-1) ... 417s Selecting previously unselected 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422s Setting up r-cran-ps (1.7.6-1) ... 422s Setting up r-cran-formatr (1.14-1) ... 422s Setting up r-cran-xml (3.99-0.16.1-1) ... 422s Setting up texlive-binaries (2023.20230311.66589-9) ... 422s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 422s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 422s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 422s Setting up r-cran-lazyeval (0.2.2-1build1) ... 422s Setting up r-cran-commonmark (1.9.1-1) ... 422s Setting up r-cran-r6 (2.5.1-1) ... 422s Setting up r-cran-pkgkitten (0.2.3-1) ... 422s Setting up texlive-base (2023.20240207-1) ... 422s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 423s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 423s tl-paper: setting paper size for 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424s Setting up r-cran-httr (1.4.7+dfsg-1) ... 424s Setting up r-cran-hms (1.1.3-1) ... 424s Setting up r-cran-memoise (2.0.1-1) ... 424s Setting up r-cran-promises (1.2.1+dfsg-1) ... 424s Setting up r-cran-purrr (1.0.2-1) ... 424s Setting up r-cran-blob (1.2.4-1) ... 424s Setting up r-cran-htmltools (0.5.7-1) ... 424s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 424s Setting up r-bioc-xvector (0.42.0-1) ... 424s Setting up r-cran-pkgbuild (1.4.3-1) ... 424s Setting up r-cran-sass (0.4.8+dfsg-1) ... 424s Setting up r-cran-dplyr (1.1.4-1) ... 424s Setting up r-cran-rsqlite (2.3.4-1) ... 424s Setting up r-cran-progress (1.2.3-1) ... 424s Setting up r-cran-pkgload (1.3.4-1) ... 424s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 424s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 424s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 424s Setting up r-cran-rematch2 (2.1.2-2build1) ... 424s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 424s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 424s Setting up r-cran-fontawesome (0.5.2-1) ... 424s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 424s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 424s Setting up r-cran-waldo (0.5.2-1build1) ... 424s Setting up r-cran-tidyr (1.3.1-1) ... 424s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 424s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 424s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 424s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 424s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 424s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 424s Setting up r-bioc-annotationdbi (1.64.1-1) ... 424s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 424s Setting up r-cran-testthat (3.2.1-1) ... 424s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 424s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 424s Setting up r-bioc-genomicalignments (1.38.2-1) ... 424s Setting up r-cran-bookdown (0.37+dfsg-1) ... 424s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 424s Setting up r-bioc-rtracklayer (1.62.0-1) ... 424s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 424s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 424s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 424s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 424s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 424s Setting up r-cran-dt (0.31+dfsg-1) ... 424s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 424s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 424s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 424s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 424s Setting up autopkgtest-satdep (0) ... 424s Processing triggers for man-db (2.12.0-3) ... 425s Processing triggers for install-info (7.1-3) ... 425s Processing triggers for libc-bin (2.39-0ubuntu2) ... 426s Processing triggers for tex-common (6.18) ... 426s Running updmap-sys. This may take some time... done. 426s Running mktexlsr /var/lib/texmf ... done. 426s Building format(s) --all. 463s This may take some time... done. 477s (Reading database ... 126127 files and directories currently installed.) 477s Removing autopkgtest-satdep (0) ... 477s autopkgtest [17:52:52]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 477s autopkgtest [17:52:52]: test pkg-r-autopkgtest: [----------------------- 477s Test: Try to load the R library SingleCellExperiment 478s 478s R version 4.3.2 (2023-10-31) -- "Eye Holes" 478s Copyright (C) 2023 The R Foundation for Statistical Computing 478s Platform: aarch64-unknown-linux-gnu (64-bit) 478s 478s R is free software and comes with ABSOLUTELY NO WARRANTY. 478s You are welcome to redistribute it under certain conditions. 478s Type 'license()' or 'licence()' for distribution details. 478s 478s R is a collaborative project with many contributors. 478s Type 'contributors()' for more information and 478s 'citation()' on how to cite R or R packages in publications. 478s 478s Type 'demo()' for some demos, 'help()' for on-line help, or 478s 'help.start()' for an HTML browser interface to help. 478s Type 'q()' to quit R. 478s 478s > library('SingleCellExperiment') 478s Loading required package: SummarizedExperiment 478s Loading required package: MatrixGenerics 478s Loading required package: matrixStats 478s 478s Attaching package: ‘MatrixGenerics’ 478s 478s The following objects are masked from ‘package:matrixStats’: 478s 478s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 478s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 478s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 478s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 478s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 478s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 478s colWeightedMeans, colWeightedMedians, colWeightedSds, 478s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 478s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 478s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 478s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 478s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 478s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 478s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 478s rowWeightedSds, rowWeightedVars 478s 478s Loading required package: GenomicRanges 478s Loading required package: stats4 478s Loading required package: BiocGenerics 478s 478s Attaching package: ‘BiocGenerics’ 478s 478s The following objects are masked from ‘package:stats’: 478s 478s IQR, mad, sd, var, xtabs 478s 478s The following objects are masked from ‘package:base’: 478s 478s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 478s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 478s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 478s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 478s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 478s table, tapply, union, unique, unsplit, which.max, which.min 478s 478s Loading required package: S4Vectors 479s 479s Attaching package: ‘S4Vectors’ 479s 479s The following object is masked from ‘package:utils’: 479s 479s findMatches 479s 479s The following objects are masked from ‘package:base’: 479s 479s expand.grid, I, unname 479s 479s Loading required package: IRanges 480s Loading required package: GenomeInfoDb 480s Loading required package: Biobase 481s Welcome to Bioconductor 481s 481s Vignettes contain introductory material; view with 481s 'browseVignettes()'. To cite Bioconductor, see 481s 'citation("Biobase")', and for packages 'citation("pkgname")'. 481s 481s 481s Attaching package: ‘Biobase’ 481s 481s The following object is masked from ‘package:MatrixGenerics’: 481s 481s rowMedians 481s 481s The following objects are masked from ‘package:matrixStats’: 481s 481s anyMissing, rowMedians 481s 484s > 484s > 484s Other tests are currently unsupported! 484s They will be progressively added. 485s autopkgtest [17:53:00]: test pkg-r-autopkgtest: -----------------------] 485s autopkgtest [17:53:00]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 485s pkg-r-autopkgtest PASS 485s autopkgtest [17:53:00]: @@@@@@@@@@@@@@@@@@@@ summary 485s pkg-r-autopkgtest PASS 497s Creating nova instance adt-noble-arm64-r-bioc-singlecellexperiment-20240316-174455-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...