0s autopkgtest [17:44:50]: starting date and time: 2024-03-16 17:44:50+0000 0s autopkgtest [17:44:50]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:44:50]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.1x01yaoh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-noble-arm64-r-bioc-shortread-20240316-174450-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [17:46:50]: testbed dpkg architecture: arm64 121s autopkgtest [17:46:51]: testbed apt version: 2.7.12 121s autopkgtest [17:46:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 123s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 124s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 124s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 124s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 124s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 124s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 124s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 124s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 124s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 124s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 126s Fetched 9060 kB in 3s (2771 kB/s) 127s Reading package lists... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Calculating upgrade... 132s The following packages will be REMOVED: 132s libglib2.0-0 libssl3 132s The following NEW packages will be installed: 132s libglib2.0-0t64 libssl3t64 xdg-user-dirs 132s The following packages have been kept back: 132s curl 132s The following packages will be upgraded: 132s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 132s ubuntu-minimal ubuntu-standard 133s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 133s Need to get 4613 kB of archives. 133s After this operation, 211 kB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 133s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 133s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 133s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 133s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 133s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 135s Fetched 4613 kB in 1s (6049 kB/s) 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 136s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 136s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 138s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 138s udisks2 depends on libglib2.0-0 (>= 2.77.0). 138s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 138s python3-gi depends on libglib2.0-0 (>= 2.77.0). 138s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 138s netplan.io depends on libglib2.0-0 (>= 2.70.0). 138s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 138s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 138s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 138s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 138s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 138s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 138s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 138s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 138s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 138s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 138s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 138s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 138s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 138s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 138s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 138s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 138s fwupd depends on libglib2.0-0 (>= 2.79.0). 138s bolt depends on libglib2.0-0 (>= 2.56.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 138s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 142s Selecting previously unselected package libglib2.0-0t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 143s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 143s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 143s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 143s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 145s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 145s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 146s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 146s wget depends on libssl3 (>= 3.0.0). 146s u-boot-tools depends on libssl3 (>= 3.0.0). 146s tnftp depends on libssl3 (>= 3.0.0). 146s tcpdump depends on libssl3 (>= 3.0.0). 146s systemd-resolved depends on libssl3 (>= 3.0.0). 146s systemd depends on libssl3 (>= 3.0.0). 146s sudo depends on libssl3 (>= 3.0.0). 146s sbsigntool depends on libssl3 (>= 3.0.0). 146s rsync depends on libssl3 (>= 3.0.0). 146s python3-cryptography depends on libssl3 (>= 3.0.0). 146s openssh-server depends on libssl3 (>= 3.0.10). 146s openssh-client depends on libssl3 (>= 3.0.10). 146s mtd-utils depends on libssl3 (>= 3.0.0). 146s mokutil depends on libssl3 (>= 3.0.0). 146s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 146s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 146s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 146s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 146s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 146s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 146s libnvme1 depends on libssl3 (>= 3.0.0). 146s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 146s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 146s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 146s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 146s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 146s kmod depends on libssl3 (>= 3.0.0). 146s dhcpcd-base depends on libssl3 (>= 3.0.0). 146s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 146s 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 146s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 146s Selecting previously unselected package libssl3t64:arm64. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 146s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 146s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 147s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 147s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 147s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 147s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 147s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 147s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 147s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 147s Unpacking ubuntu-minimal (1.536) over (1.535) ... 147s Selecting previously unselected package xdg-user-dirs. 147s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 147s Unpacking xdg-user-dirs (0.18-1) ... 147s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 147s Unpacking ubuntu-standard (1.536) over (1.535) ... 147s Setting up ubuntu-minimal (1.536) ... 147s Setting up xdg-user-dirs (0.18-1) ... 147s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 147s Setting up libtirpc-common (1.3.4+ds-1.1) ... 147s Setting up ubuntu-standard (1.536) ... 147s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 148s No schema files found: doing nothing. 148s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 148s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 148s Setting up openssl (3.0.13-0ubuntu1) ... 148s Setting up readline-common (8.2-3.1) ... 148s Processing triggers for man-db (2.12.0-3) ... 149s Processing triggers for install-info (7.1-3) ... 149s Processing triggers for libc-bin (2.39-0ubuntu2) ... 150s Reading package lists... 150s Building dependency tree... 150s Reading state information... 150s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 151s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 151s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 151s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 151s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 152s Reading package lists... 152s Reading package lists... 153s Building dependency tree... 153s Reading state information... 153s Calculating upgrade... 154s The following packages have been kept back: 154s curl 154s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 154s Reading package lists... 154s Building dependency tree... 154s Reading state information... 155s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 158s autopkgtest [17:47:28]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 158s autopkgtest [17:47:28]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 161s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (dsc) [2387 B] 161s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (tar) [5223 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (diff) [5876 B] 161s gpgv: Signature made Mon Dec 18 09:06:56 2023 UTC 161s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 161s gpgv: issuer "tille@debian.org" 161s gpgv: Can't check signature: No public key 161s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.60.0-2.dsc: no acceptable signature found 161s autopkgtest [17:47:31]: testing package r-bioc-shortread version 1.60.0-2 162s autopkgtest [17:47:32]: build not needed 164s autopkgtest [17:47:34]: test pkg-r-autopkgtest: preparing testbed 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s Starting pkgProblemResolver with broken count: 0 168s Starting 2 pkgProblemResolver with broken count: 0 168s Done 169s The following additional packages will be installed: 169s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 169s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 169s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 169s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 169s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 169s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 169s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 169s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 169s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 169s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 169s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 169s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 169s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 169s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 169s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 169s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 169s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 169s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 169s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 169s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 169s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 169s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 169s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 169s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 169s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 169s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 169s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 169s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 169s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 169s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 169s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 169s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 169s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 169s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 169s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 169s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 169s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 169s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 169s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 169s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 169s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 169s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 169s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 169s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 169s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 169s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 169s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 169s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 169s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 169s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 169s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 169s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 169s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 169s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 169s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 169s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 169s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 169s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 169s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 169s Suggested packages: 169s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 169s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 169s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 169s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 169s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 169s libboost-context1.83-dev libboost-contract1.83-dev 169s libboost-coroutine1.83-dev libboost-date-time1.83-dev 169s libboost-exception1.83-dev libboost-fiber1.83-dev 169s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 169s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 169s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 169s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 169s libboost-numpy1.83-dev libboost-program-options1.83-dev 169s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 169s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 169s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 169s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 169s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 169s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 169s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 169s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 169s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 169s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 169s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 169s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 169s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 169s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 169s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 169s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 169s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 169s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 169s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 169s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 169s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 169s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 169s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 169s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 169s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 169s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 169s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 169s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 169s Recommended packages: 169s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 169s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 169s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 169s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 169s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 169s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 169s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 169s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 169s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 169s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 169s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 169s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 169s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 169s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 169s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 169s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 169s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 170s The following packages will be REMOVED: 170s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 170s The following NEW packages will be installed: 170s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 170s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 170s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 170s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 170s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 170s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 170s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 170s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 170s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 170s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 170s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 170s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 170s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 170s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 170s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 170s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 170s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 170s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 170s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 170s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 170s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 170s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 170s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 170s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 170s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 170s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 170s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 170s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 170s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 170s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 170s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 170s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 170s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 170s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 170s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 170s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 170s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 170s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 170s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 170s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 170s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 170s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 170s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 170s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 170s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 170s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 170s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 170s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 170s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 170s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 170s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 170s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 170s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 170s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 170s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 170s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 170s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 170s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 170s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 170s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 170s The following packages will be upgraded: 170s curl 170s 1 upgraded, 290 newly installed, 5 to remove and 0 not upgraded. 170s Need to get 427 MB/427 MB of archives. 170s After this operation, 1353 MB of additional disk space will be used. 170s Get:1 /tmp/autopkgtest.5w078D/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 171s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 171s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 171s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 171s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 171s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 171s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 171s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 171s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 171s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 171s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 171s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 171s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 171s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 171s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 171s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 171s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 171s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 171s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 171s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 171s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 171s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 171s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 171s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 172s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 172s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 172s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 172s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 172s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 172s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 172s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 172s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 172s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 172s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 172s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 173s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 173s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 173s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 173s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 173s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 173s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 173s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 173s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 173s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 173s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 173s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 173s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 173s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 173s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 173s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 173s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 173s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 173s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 173s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 173s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 173s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 173s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 173s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 173s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 173s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 173s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 173s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 173s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 173s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 173s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 173s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 173s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 173s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 173s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 173s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 173s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 173s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 174s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 174s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 174s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 174s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 174s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 174s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 174s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 174s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 174s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 174s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 174s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 174s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 174s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 174s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 174s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 174s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 174s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 174s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 174s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 174s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 174s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 174s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 174s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 174s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 174s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 174s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 174s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 174s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 174s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 174s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 175s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 175s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 175s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 175s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 175s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 175s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 175s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 175s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 175s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 175s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 175s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 175s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 175s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 175s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 175s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 175s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 175s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 175s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 175s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 175s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 175s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 175s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 175s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 175s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 175s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 175s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 175s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 175s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 175s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 175s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 175s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 175s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 175s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 175s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 175s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 175s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 175s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 175s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 175s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 175s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 176s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 176s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 176s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 176s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 176s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 176s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 176s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 177s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 177s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 177s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 177s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 177s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 177s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 177s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 177s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 177s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 177s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 177s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 177s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 177s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 178s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 178s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 178s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 178s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 178s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 178s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 178s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 178s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 178s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 178s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 178s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 178s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 178s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 178s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 178s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 178s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 178s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 178s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 178s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 178s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 178s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 178s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 178s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 178s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 178s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 178s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 178s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 178s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 178s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 178s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 179s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 179s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 179s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 179s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 179s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 179s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 179s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 179s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 179s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 179s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 179s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 180s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 180s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 180s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 180s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 180s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 180s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 180s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 180s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 180s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 180s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 180s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 180s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 180s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 180s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 180s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 180s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 180s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 180s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 181s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 181s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 181s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 181s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 181s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 181s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 181s Get:229 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 181s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 181s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 181s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 181s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 181s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 181s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 181s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 181s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 181s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 181s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 181s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 181s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 181s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 181s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 181s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 181s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 181s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 181s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 181s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 181s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 181s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 181s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 181s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 181s Get:253 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 181s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 182s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 182s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 182s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 184s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 184s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 184s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 184s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 184s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 184s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 184s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 184s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 184s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 184s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 184s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 184s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 184s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 184s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 184s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 184s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 184s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 184s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 184s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 184s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 185s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 185s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 185s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 185s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 185s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 185s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 185s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 185s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 185s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 185s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 185s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 185s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 185s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 185s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 187s Preconfiguring packages ... 187s Fetched 427 MB in 15s (28.6 MB/s) 187s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 187s wget depends on libpsl5 (>= 0.16.0). 187s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 187s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 187s 187s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 187s Removing libpsl5:arm64 (0.21.2-1build1) ... 188s Selecting previously unselected package libpsl5t64:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 188s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 188s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 188s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 188s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 188s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 188s Selecting previously unselected package libcurl4t64:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 188s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 188s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 188s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 188s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 188s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 188s 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 188s Removing libpng16-16:arm64 (1.6.43-1) ... 188s Selecting previously unselected package libpng16-16t64:arm64. 188s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 188s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 188s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 188s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 188s parted depends on libreadline8 (>= 6.0). 188s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 188s gpgsm depends on libreadline8 (>= 6.0). 188s gpgconf depends on libreadline8 (>= 6.0). 188s gpg depends on libreadline8 (>= 6.0). 188s gawk depends on libreadline8 (>= 6.0). 188s fdisk depends on libreadline8 (>= 6.0). 188s 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 189s Removing libreadline8:arm64 (8.2-3) ... 189s Selecting previously unselected package libreadline8t64:arm64. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 189s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 189s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 189s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 189s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 189s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 189s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 189s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 189s lsof depends on libtirpc3 (>= 1.0.2). 189s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 189s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 189s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 189s iproute2 depends on libtirpc3 (>= 1.0.2). 189s 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 189s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 189s Selecting previously unselected package libtirpc3t64:arm64. 189s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 189s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 189s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 189s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 189s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 189s Selecting previously unselected package libc-dev-bin. 189s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 189s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 189s Selecting previously unselected package linux-libc-dev:arm64. 190s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 190s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 190s Selecting previously unselected package libcrypt-dev:arm64. 190s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 190s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 190s Selecting previously unselected package libtirpc-dev:arm64. 190s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 190s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 190s Selecting previously unselected package libnsl-dev:arm64. 191s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 191s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 191s Selecting previously unselected package rpcsvc-proto. 191s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 191s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 191s Selecting previously unselected package libc6-dev:arm64. 191s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 191s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 191s Selecting previously unselected package libisl23:arm64. 191s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 191s Unpacking libisl23:arm64 (0.26-3) ... 191s Selecting previously unselected package libmpc3:arm64. 191s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 191s Unpacking libmpc3:arm64 (1.3.1-1) ... 191s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 191s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 191s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package cpp-13. 192s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 192s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 192s Selecting previously unselected package cpp-aarch64-linux-gnu. 192s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 192s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package cpp. 192s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 192s Unpacking cpp (4:13.2.0-7ubuntu1) ... 192s Selecting previously unselected package libcc1-0:arm64. 192s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libgomp1:arm64. 192s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 192s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 192s Selecting previously unselected package libitm1:arm64. 193s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libatomic1:arm64. 193s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libasan8:arm64. 193s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package liblsan0:arm64. 193s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libtsan2:arm64. 193s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libubsan1:arm64. 193s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 193s Selecting previously unselected package libhwasan0:arm64. 193s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 193s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 194s Selecting previously unselected package libgcc-13-dev:arm64. 194s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 194s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gcc-13. 194s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package gcc-aarch64-linux-gnu. 194s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package gcc. 194s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 194s Unpacking gcc (4:13.2.0-7ubuntu1) ... 194s Selecting previously unselected package libstdc++-13-dev:arm64. 194s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Selecting previously unselected package g++-13-aarch64-linux-gnu. 194s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 194s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 195s Selecting previously unselected package g++-13. 195s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 195s Unpacking g++-13 (13.2.0-17ubuntu2) ... 195s Selecting previously unselected package g++-aarch64-linux-gnu. 195s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 195s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 195s Selecting previously unselected package g++. 195s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 195s Unpacking g++ (4:13.2.0-7ubuntu1) ... 195s Selecting previously unselected package build-essential. 195s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 195s Unpacking build-essential (12.10ubuntu1) ... 195s Selecting previously unselected package dctrl-tools. 195s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 195s Unpacking dctrl-tools (2.24-3build2) ... 195s Selecting previously unselected package fonts-dejavu-mono. 195s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 195s Unpacking fonts-dejavu-mono (2.37-8) ... 195s Selecting previously unselected package fonts-dejavu-core. 195s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 195s Unpacking fonts-dejavu-core (2.37-8) ... 195s Selecting previously unselected package fontconfig-config. 196s Preparing to unpack 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fonts-lmodern. 196s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 196s Unpacking fonts-lmodern (2.005-1) ... 196s Selecting previously unselected package fonts-mathjax. 196s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 196s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 196s Selecting previously unselected package libgfortran5:arm64. 196s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 196s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 196s Selecting previously unselected package libgfortran-13-dev:arm64. 196s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 196s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 196s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 196s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package gfortran-13. 197s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package gfortran-aarch64-linux-gnu. 197s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package gfortran. 197s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package icu-devtools. 197s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 197s Unpacking icu-devtools (74.2-1ubuntu1) ... 197s Selecting previously unselected package javascript-common. 197s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 197s Unpacking javascript-common (11+nmu1) ... 197s Selecting previously unselected package libio-string-perl. 197s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 197s Unpacking libio-string-perl (1.08-4) ... 197s Selecting previously unselected package liblatex-tounicode-perl. 197s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 197s Unpacking liblatex-tounicode-perl (0.54-2) ... 197s Selecting previously unselected package libbibtex-parser-perl. 197s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 197s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 197s Selecting previously unselected package libblas3:arm64. 197s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 197s Unpacking libblas3:arm64 (3.12.0-3) ... 197s Selecting previously unselected package libblas-dev:arm64. 197s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 197s Unpacking libblas-dev:arm64 (3.12.0-3) ... 198s Selecting previously unselected package libboost1.83-dev:arm64. 198s Preparing to unpack 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libharfbuzz0b:arm64. 200s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 200s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 200s Selecting previously unselected package x11-common. 200s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 200s Unpacking x11-common (1:7.7+23ubuntu2) ... 201s Selecting previously unselected package libice6:arm64. 201s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 201s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 201s Selecting previously unselected package libicu-dev:arm64. 201s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 201s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 202s Selecting previously unselected package libjpeg-turbo8:arm64. 202s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 202s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 202s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 202s Preparing to unpack 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package libjs-jquery-datatables. 203s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 203s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 203s Selecting previously unselected package libjs-sifter.js. 204s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 204s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 204s Selecting previously unselected package libjs-microplugin.js. 204s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 204s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 204s Selecting previously unselected package libjs-jquery-selectize.js. 204s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 204s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 204s Selecting previously unselected package libjs-jquery-ui. 204s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 204s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 204s Selecting previously unselected package libjs-json. 204s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 204s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 204s Selecting previously unselected package libjs-lunr. 204s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 204s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 204s Selecting previously unselected package libjs-prettify. 204s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 204s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 204s Selecting previously unselected package libkpathsea6:arm64. 204s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 204s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 204s Selecting previously unselected package liblapack3:arm64. 204s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 204s Unpacking liblapack3:arm64 (3.12.0-3) ... 204s Selecting previously unselected package liblapack-dev:arm64. 204s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 204s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 204s Selecting previously unselected package liblerc4:arm64. 204s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 204s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 204s Selecting previously unselected package liblua5.4-0:arm64. 204s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 204s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 204s Selecting previously unselected package libncurses-dev:arm64. 204s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 204s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 205s Selecting previously unselected package libthai-data. 205s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 205s Unpacking libthai-data (0.1.29-2) ... 205s Selecting previously unselected package libthai0:arm64. 205s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 205s Unpacking libthai0:arm64 (0.1.29-2) ... 205s Selecting previously unselected package libpango-1.0-0:arm64. 205s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangoft2-1.0-0:arm64. 205s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangocairo-1.0-0:arm64. 205s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpaper1:arm64. 205s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 205s Unpacking libpaper1:arm64 (1.1.29) ... 205s Selecting previously unselected package libpaper-utils. 205s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 205s Unpacking libpaper-utils (1.1.29) ... 205s Selecting previously unselected package libpcre2-16-0:arm64. 205s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-32-0:arm64. 205s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-posix3:arm64. 205s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-dev:arm64. 205s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpkgconf3:arm64. 206s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 206s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 206s Selecting previously unselected package zlib1g-dev:arm64. 206s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 206s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 206s Selecting previously unselected package libpng-dev:arm64. 206s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 206s Unpacking libpng-dev:arm64 (1.6.43-3) ... 206s Selecting previously unselected package libpotrace0:arm64. 206s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 206s Unpacking libpotrace0:arm64 (1.16-2) ... 206s Selecting previously unselected package libptexenc1:arm64. 206s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 206s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 206s Selecting previously unselected package libreadline-dev:arm64. 207s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 207s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 207s Selecting previously unselected package libsharpyuv0:arm64. 207s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 207s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libsm6:arm64. 207s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 207s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 207s Selecting previously unselected package libsynctex2:arm64. 207s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libtcl8.6:arm64. 207s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 207s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 207s Selecting previously unselected package libteckit0:arm64. 207s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 207s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 207s Selecting previously unselected package libtexlua53-5:arm64. 207s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 207s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 207s Selecting previously unselected package libjbig0:arm64. 207s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 207s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 207s Selecting previously unselected package libwebp7:arm64. 207s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 207s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 207s Selecting previously unselected package libtiff6:arm64. 207s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 207s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 207s Selecting previously unselected package libxft2:arm64. 207s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 207s Unpacking libxft2:arm64 (2.3.6-1) ... 207s Selecting previously unselected package libxss1:arm64. 207s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 207s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 207s Selecting previously unselected package libtk8.6:arm64. 207s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 207s Unpacking libtk8.6:arm64 (8.6.13-2) ... 207s Selecting previously unselected package libxt6t64:arm64. 207s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 207s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 207s Selecting previously unselected package libxmu6:arm64. 207s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 207s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 207s Selecting previously unselected package libxpm4:arm64. 207s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 207s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 207s Selecting previously unselected package libxaw7:arm64. 208s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 208s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 208s Selecting previously unselected package libxi6:arm64. 208s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 208s Unpacking libxi6:arm64 (2:1.8.1-1) ... 208s Selecting previously unselected package libzzip-0-13:arm64. 208s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 208s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 208s Selecting previously unselected package zip. 208s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 208s Unpacking zip (3.0-13) ... 208s Selecting previously unselected package unzip. 208s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 208s Unpacking unzip (6.0-28ubuntu3) ... 208s Selecting previously unselected package xdg-utils. 208s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 208s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 208s Selecting previously unselected package r-base-core. 208s Preparing to unpack .../136-r-base-core_4.3.3-2build1_arm64.deb ... 208s Unpacking r-base-core (4.3.3-2build1) ... 208s Selecting previously unselected package r-cran-littler. 208s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 208s Unpacking r-cran-littler (0.3.19-1) ... 208s Selecting previously unselected package littler. 208s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 208s Unpacking littler (0.3.19-1) ... 208s Selecting previously unselected package node-bootstrap-sass. 209s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 209s Unpacking node-bootstrap-sass (3.4.3-2) ... 209s Selecting previously unselected package node-html5shiv. 209s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 209s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 209s Selecting previously unselected package node-normalize.css. 209s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 209s Unpacking node-normalize.css (8.0.1-5) ... 209s Selecting previously unselected package pandoc-data. 209s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 209s Unpacking pandoc-data (3.1.3-1) ... 209s Selecting previously unselected package pandoc. 209s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 209s Unpacking pandoc (3.1.3+ds-2) ... 210s Selecting previously unselected package pkgconf-bin. 210s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 210s Unpacking pkgconf-bin (1.8.1-2) ... 210s Selecting previously unselected package pkgconf:arm64. 210s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 210s Unpacking pkgconf:arm64 (1.8.1-2) ... 210s Selecting previously unselected package pkg-config:arm64. 210s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 210s Unpacking pkg-config:arm64 (1.8.1-2) ... 210s Selecting previously unselected package liblzma-dev:arm64. 210s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 210s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 210s Selecting previously unselected package r-base-dev. 210s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 210s Unpacking r-base-dev (4.3.3-2build1) ... 210s Selecting previously unselected package pkg-r-autopkgtest. 210s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 210s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 210s Selecting previously unselected package r-bioc-biocgenerics. 210s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 210s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 210s Selecting previously unselected package r-bioc-biobase. 210s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 210s Unpacking r-bioc-biobase (2.62.0-1) ... 211s Selecting previously unselected package r-bioc-s4vectors. 211s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 211s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 211s Selecting previously unselected package r-bioc-iranges. 211s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 211s Unpacking r-bioc-iranges (2.36.0-1) ... 211s Selecting previously unselected package r-cran-dbi. 211s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 211s Unpacking r-cran-dbi (1.2.2-1) ... 211s Selecting previously unselected package r-cran-bit. 211s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit (4.0.5-1) ... 211s Selecting previously unselected package r-cran-bit64. 211s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit64 (4.0.5-1) ... 211s Selecting previously unselected package r-cran-rlang. 211s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 211s Unpacking r-cran-rlang (1.1.3-1) ... 211s Selecting previously unselected package r-cran-cli. 212s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 212s Unpacking r-cran-cli (3.6.2-1) ... 212s Selecting previously unselected package r-cran-glue. 212s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 212s Unpacking r-cran-glue (1.7.0-1) ... 212s Selecting previously unselected package r-cran-lifecycle. 212s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 212s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 212s Selecting previously unselected package r-cran-vctrs. 212s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 212s Unpacking r-cran-vctrs (0.6.5-1) ... 212s Selecting previously unselected package r-cran-blob. 212s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 212s Unpacking r-cran-blob (1.2.4-1) ... 212s Selecting previously unselected package r-cran-fastmap. 212s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 212s Unpacking r-cran-fastmap (1.1.1-1) ... 212s Selecting previously unselected package r-cran-cachem. 212s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 212s Unpacking r-cran-cachem (1.0.8-1) ... 212s Selecting previously unselected package r-cran-memoise. 213s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 213s Unpacking r-cran-memoise (2.0.1-1) ... 213s Selecting previously unselected package r-cran-pkgconfig. 213s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 213s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 213s Selecting previously unselected package r-cran-plogr. 213s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 213s Unpacking r-cran-plogr (0.2.0-3build1) ... 213s Selecting previously unselected package r-cran-cpp11. 213s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 213s Unpacking r-cran-cpp11 (0.4.7-1) ... 213s Selecting previously unselected package r-cran-rsqlite. 213s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 213s Unpacking r-cran-rsqlite (2.3.4-1) ... 213s Selecting previously unselected package r-cran-curl. 213s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 213s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-jsonlite. 213s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 213s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 213s Selecting previously unselected package r-cran-mime. 213s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 213s Unpacking r-cran-mime (0.12-1) ... 213s Selecting previously unselected package r-cran-sys. 213s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 213s Unpacking r-cran-sys (3.4.2-1) ... 213s Selecting previously unselected package r-cran-askpass. 213s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 213s Unpacking r-cran-askpass (1.2.0-1) ... 213s Selecting previously unselected package r-cran-openssl. 213s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 213s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 213s Selecting previously unselected package r-cran-r6. 213s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 213s Unpacking r-cran-r6 (2.5.1-1) ... 213s Selecting previously unselected package r-cran-httr. 213s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 213s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 213s Selecting previously unselected package r-cran-png. 213s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 213s Unpacking r-cran-png (0.1-8-1) ... 213s Selecting previously unselected package r-bioc-zlibbioc. 214s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 214s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 214s Selecting previously unselected package r-bioc-xvector. 214s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 214s Unpacking r-bioc-xvector (0.42.0-1) ... 214s Selecting previously unselected package r-cran-bitops. 214s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 214s Unpacking r-cran-bitops (1.0-7-1) ... 214s Selecting previously unselected package r-cran-rcurl. 214s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 214s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 214s Selecting previously unselected package r-bioc-genomeinfodbdata. 214s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 214s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 214s Selecting previously unselected package r-bioc-genomeinfodb. 214s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 214s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 214s Selecting previously unselected package r-cran-crayon. 214s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 214s Unpacking r-cran-crayon (1.5.2-1) ... 214s Selecting previously unselected package r-bioc-biostrings. 214s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 214s Selecting previously unselected package r-bioc-keggrest. 214s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 214s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 214s Selecting previously unselected package r-bioc-annotationdbi. 214s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 214s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 214s Selecting previously unselected package r-cran-generics. 214s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 214s Unpacking r-cran-generics (0.1.3-1) ... 214s Selecting previously unselected package r-cran-magrittr. 214s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 214s Unpacking r-cran-magrittr (2.0.3-1) ... 214s Selecting previously unselected package r-cran-fansi. 214s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 214s Unpacking r-cran-fansi (1.0.5-1) ... 214s Selecting previously unselected package r-cran-utf8. 215s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 215s Unpacking r-cran-utf8 (1.2.4-1) ... 215s Selecting previously unselected package r-cran-pillar. 215s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 215s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 215s Selecting previously unselected package r-cran-tibble. 215s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 215s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 215s Selecting previously unselected package r-cran-withr. 215s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 215s Unpacking r-cran-withr (2.5.0-1) ... 215s Selecting previously unselected package r-cran-tidyselect. 215s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 215s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 215s Selecting previously unselected package r-cran-dplyr. 215s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 215s Unpacking r-cran-dplyr (1.1.4-1) ... 215s Selecting previously unselected package r-cran-purrr. 215s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 215s Unpacking r-cran-purrr (1.0.2-1) ... 215s Selecting previously unselected package r-cran-stringi. 215s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 215s Unpacking r-cran-stringi (1.8.3-1) ... 215s Selecting previously unselected package r-cran-stringr. 215s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 215s Unpacking r-cran-stringr (1.5.1-1) ... 215s Selecting previously unselected package r-cran-tidyr. 215s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 215s Unpacking r-cran-tidyr (1.3.1-1) ... 215s Selecting previously unselected package r-cran-dbplyr. 215s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 215s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 216s Selecting previously unselected package r-cran-filelock. 216s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 216s Unpacking r-cran-filelock (1.0.3-1) ... 216s Selecting previously unselected package r-bioc-biocfilecache. 216s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 216s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 216s Selecting previously unselected package r-bioc-biocio. 216s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 216s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 216s Selecting previously unselected package r-cran-formatr. 216s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 216s Unpacking r-cran-formatr (1.14-1) ... 216s Selecting previously unselected package r-cran-lambda.r. 216s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 216s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 216s Selecting previously unselected package r-cran-futile.options. 216s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 216s Unpacking r-cran-futile.options (1.0.1-3build1) ... 216s Selecting previously unselected package r-cran-futile.logger. 216s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 216s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 216s Selecting previously unselected package r-cran-snow. 216s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 216s Unpacking r-cran-snow (1:0.4.4-2) ... 216s Selecting previously unselected package r-cran-codetools. 216s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 216s Unpacking r-cran-codetools (0.2-19-1) ... 216s Selecting previously unselected package r-cran-bh. 216s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 216s Unpacking r-cran-bh (1.84.0-1) ... 216s Selecting previously unselected package r-bioc-biocparallel. 216s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 216s Unpacking r-bioc-biocparallel (1.36.0-1) ... 216s Selecting previously unselected package r-cran-base64enc. 216s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 216s Unpacking r-cran-base64enc (0.1-3-3) ... 216s Selecting previously unselected package r-cran-digest. 216s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 216s Unpacking r-cran-digest (0.6.34-1) ... 216s Selecting previously unselected package r-cran-ellipsis. 216s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 216s Unpacking r-cran-ellipsis (0.3.2-2) ... 216s Selecting previously unselected package r-cran-htmltools. 216s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 216s Unpacking r-cran-htmltools (0.5.7-1) ... 216s Selecting previously unselected package r-cran-evaluate. 216s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 216s Unpacking r-cran-evaluate (0.23-1) ... 216s Selecting previously unselected package r-cran-xfun. 217s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 217s Unpacking r-cran-xfun (0.41+dfsg-1) ... 217s Selecting previously unselected package r-cran-highr. 217s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 217s Unpacking r-cran-highr (0.10+dfsg-1) ... 217s Selecting previously unselected package r-cran-yaml. 217s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 217s Unpacking r-cran-yaml (2.3.8-1) ... 217s Selecting previously unselected package libjs-mathjax. 217s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 217s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 217s Selecting previously unselected package r-cran-knitr. 218s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 218s Unpacking r-cran-knitr (1.45+dfsg-1) ... 218s Selecting previously unselected package r-cran-jquerylib. 218s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 218s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 218s Selecting previously unselected package r-cran-fs. 218s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 218s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 218s Selecting previously unselected package r-cran-rappdirs. 218s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 218s Unpacking r-cran-rappdirs (0.3.3-1) ... 218s Selecting previously unselected package r-cran-sass. 218s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 218s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 218s Selecting previously unselected package r-cran-bslib. 218s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 218s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 218s Selecting previously unselected package r-cran-fontawesome. 219s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 219s Unpacking r-cran-fontawesome (0.5.2-1) ... 219s Selecting previously unselected package r-cran-tinytex. 219s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 219s Unpacking r-cran-tinytex (0.49-1) ... 219s Selecting previously unselected package libjs-modernizr. 219s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 219s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 219s Selecting previously unselected package r-cran-pkgkitten. 219s Preparing to unpack .../232-r-cran-pkgkitten_0.2.3-1_all.deb ... 219s Unpacking r-cran-pkgkitten (0.2.3-1) ... 219s Selecting previously unselected package r-cran-rcpp. 219s Preparing to unpack .../233-r-cran-rcpp_1.0.12-1_arm64.deb ... 219s Unpacking r-cran-rcpp (1.0.12-1) ... 219s Selecting previously unselected package r-cran-later. 220s Preparing to unpack .../234-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 220s Unpacking r-cran-later (1.3.2+dfsg-1) ... 220s Selecting previously unselected package r-cran-promises. 220s Preparing to unpack .../235-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 220s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 220s Selecting previously unselected package r-cran-httpuv. 221s Preparing to unpack .../236-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 221s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 221s Selecting previously unselected package r-cran-xtable. 221s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2_all.deb ... 221s Unpacking r-cran-xtable (1:1.8-4-2) ... 221s Selecting previously unselected package r-cran-sourcetools. 222s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 222s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 222s Selecting previously unselected package r-cran-commonmark. 222s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 222s Unpacking r-cran-commonmark (1.9.1-1) ... 222s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 222s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 222s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 222s Selecting previously unselected package r-cran-shiny. 222s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 222s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 222s Selecting previously unselected package r-cran-rmarkdown. 222s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 222s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 222s Selecting previously unselected package r-cran-bookdown. 222s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 222s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 222s Selecting previously unselected package r-cran-biocmanager. 222s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 222s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 222s Selecting previously unselected package tex-common. 222s Preparing to unpack .../245-tex-common_6.18_all.deb ... 222s Unpacking tex-common (6.18) ... 222s Selecting previously unselected package t1utils. 222s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 222s Unpacking t1utils (1.41-4build2) ... 222s Selecting previously unselected package texlive-binaries. 222s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 222s Unpacking texlive-binaries (2023.20230311.66589-9) ... 223s Selecting previously unselected package texlive-base. 223s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 223s Unpacking texlive-base (2023.20240207-1) ... 224s Selecting previously unselected package texlive-latex-base. 224s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 224s Unpacking texlive-latex-base (2023.20240207-1) ... 224s Selecting previously unselected package texlive-bibtex-extra. 224s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 224s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 227s Selecting previously unselected package r-bioc-biocstyle. 228s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 228s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 228s Selecting previously unselected package r-cran-xml. 228s Preparing to unpack .../252-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 228s Unpacking r-cran-xml (3.99-0.16.1-1) ... 228s Selecting previously unselected package r-cran-hms. 228s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 228s Unpacking r-cran-hms (1.1.3-1) ... 228s Selecting previously unselected package r-cran-prettyunits. 228s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 228s Unpacking r-cran-prettyunits (1.2.0-1) ... 228s Selecting previously unselected package r-cran-progress. 228s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 228s Unpacking r-cran-progress (1.2.3-1) ... 228s Selecting previously unselected package r-cran-xml2. 228s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 228s Unpacking r-cran-xml2 (1.3.6-1) ... 228s Selecting previously unselected package r-bioc-biomart. 228s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 228s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 228s Selecting previously unselected package r-cran-lattice. 228s Preparing to unpack .../258-r-cran-lattice_0.22-5-1_arm64.deb ... 228s Unpacking r-cran-lattice (0.22-5-1) ... 228s Selecting previously unselected package r-cran-matrix. 229s Preparing to unpack .../259-r-cran-matrix_1.6-5-1_arm64.deb ... 229s Unpacking r-cran-matrix (1.6-5-1) ... 229s Selecting previously unselected package r-cran-matrixstats. 229s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 229s Unpacking r-cran-matrixstats (1.2.0-1) ... 229s Selecting previously unselected package r-bioc-matrixgenerics. 229s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 229s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 229s Selecting previously unselected package r-cran-abind. 229s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 229s Unpacking r-cran-abind (1.4-5-2) ... 229s Selecting previously unselected package r-bioc-s4arrays. 229s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 229s Selecting previously unselected package r-bioc-sparsearray. 229s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 229s Selecting previously unselected package r-bioc-delayedarray. 229s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 229s Selecting previously unselected package r-bioc-genomicranges. 229s Preparing to unpack .../266-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 229s Selecting previously unselected package r-bioc-summarizedexperiment. 229s Preparing to unpack .../267-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 229s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 229s Selecting previously unselected package r-bioc-rhtslib. 229s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 229s Selecting previously unselected package r-bioc-rsamtools. 229s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 229s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 230s Selecting previously unselected package r-bioc-genomicalignments. 230s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 230s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 230s Selecting previously unselected package r-cran-rjson. 230s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 230s Unpacking r-cran-rjson (0.2.21-1) ... 230s Selecting previously unselected package r-cran-restfulr. 230s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 230s Unpacking r-cran-restfulr (0.0.15-1) ... 230s Selecting previously unselected package r-bioc-rtracklayer. 230s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 230s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 230s Selecting previously unselected package r-bioc-genomicfeatures. 230s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 230s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 230s Selecting previously unselected package r-cran-hwriter. 230s Preparing to unpack .../275-r-cran-hwriter_1.3.2.1-1_all.deb ... 230s Unpacking r-cran-hwriter (1.3.2.1-1) ... 230s Selecting previously unselected package r-cran-jpeg. 230s Preparing to unpack .../276-r-cran-jpeg_0.1-10-1_arm64.deb ... 230s Unpacking r-cran-jpeg (0.1-10-1) ... 230s Selecting previously unselected package r-cran-rcolorbrewer. 230s Preparing to unpack .../277-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 230s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 230s Selecting previously unselected package r-cran-deldir. 230s Preparing to unpack .../278-r-cran-deldir_2.0-4-1_arm64.deb ... 230s Unpacking r-cran-deldir (2.0-4-1) ... 230s Selecting previously unselected package r-cran-rcppeigen. 230s Preparing to unpack .../279-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 230s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 230s Selecting previously unselected package r-cran-interp. 230s Preparing to unpack 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232s Setting up dctrl-tools (2.24-3build2) ... 232s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 232s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 232s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 232s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 232s Setting up libpotrace0:arm64 (1.16-2) ... 232s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 232s Setting up libice6:arm64 (2:1.0.10-1build2) ... 232s Setting up liblapack3:arm64 (3.12.0-3) ... 232s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 232s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 232s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 232s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 232s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 233s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 233s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 233s Setting up pkgconf:arm64 (1.8.1-2) ... 233s Setting up libthai0:arm64 (0.1.29-2) ... 233s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 233s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 233s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 233s Setting up pandoc (3.1.3+ds-2) ... 233s Setting up liblapack-dev:arm64 (3.12.0-3) ... 233s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 233s Setting up pkg-config:arm64 (1.8.1-2) ... 233s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 233s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 233s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 233s Setting up curl (8.5.0-2ubuntu7) ... 233s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 233s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 233s Setting up libsm6:arm64 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zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 235s Setting up cpp (4:13.2.0-7ubuntu1) ... 235s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 235s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 235s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 235s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 235s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 235s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 235s Setting up g++-13 (13.2.0-17ubuntu2) ... 235s Setting up libxmu6:arm64 (2:1.1.3-3) ... 235s Setting up libpng-dev:arm64 (1.6.43-3) ... 235s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 235s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 235s Setting up libxaw7:arm64 (2:1.0.14-1) ... 235s Setting up gcc (4:13.2.0-7ubuntu1) ... 235s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 235s Setting up r-base-core (4.3.3-2build1) ... 235s 235s Creating config file /etc/R/Renviron with new version 236s Setting up r-cran-crayon (1.5.2-1) ... 236s Setting up r-cran-sourcetools (0.1.7-1-1) ... 236s Setting up r-cran-futile.options (1.0.1-3build1) ... 236s Setting up r-cran-lattice (0.22-5-1) ... 236s Setting up r-cran-formatr (1.14-1) ... 236s Setting up r-cran-xml (3.99-0.16.1-1) ... 236s Setting up texlive-binaries (2023.20230311.66589-9) ... 236s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 236s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 236s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 236s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 236s Setting up r-cran-commonmark (1.9.1-1) ... 236s Setting up r-cran-r6 (2.5.1-1) ... 236s Setting up r-cran-pkgkitten (0.2.3-1) ... 236s Setting up r-cran-jpeg (0.1-10-1) ... 236s Setting up texlive-base (2023.20240207-1) ... 236s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 237s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 237s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 237s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 238s Setting up r-cran-magrittr (2.0.3-1) ... 238s Setting up r-cran-rappdirs (0.3.3-1) ... 238s Setting up r-cran-filelock (1.0.3-1) ... 238s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 238s Setting up r-cran-littler (0.3.19-1) ... 238s Setting up r-cran-bh (1.84.0-1) ... 238s Setting up r-cran-fs (1.6.3+dfsg-1) ... 238s Setting up r-cran-rcpp (1.0.12-1) ... 238s Setting up r-cran-curl (5.2.0+dfsg-1) ... 238s Setting up r-cran-codetools (0.2-19-1) ... 238s Setting up r-bioc-biocgenerics (0.48.1-2) ... 238s Setting up r-cran-rlang (1.1.3-1) ... 238s Setting up r-cran-matrixstats (1.2.0-1) ... 238s Setting up littler (0.3.19-1) ... 238s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 238s Setting up r-cran-xfun (0.41+dfsg-1) ... 238s Setting up r-cran-sys (3.4.2-1) ... 238s Setting up r-cran-plogr (0.2.0-3build1) ... 238s Setting up r-cran-withr (2.5.0-1) ... 238s Setting up r-cran-mime (0.12-1) ... 238s Setting up r-cran-generics (0.1.3-1) ... 238s Setting up r-cran-base64enc (0.1-3-3) ... 238s Setting up r-cran-abind (1.4-5-2) ... 238s Setting up r-cran-digest (0.6.34-1) ... 238s Setting up r-cran-yaml (2.3.8-1) ... 238s Setting up r-cran-lambda.r (1.2.4-2build1) ... 238s Setting up r-cran-evaluate (0.23-1) ... 238s Setting up r-cran-dbi (1.2.2-1) ... 238s Setting up r-cran-highr (0.10+dfsg-1) ... 238s Setting up r-cran-prettyunits (1.2.0-1) ... 238s Setting up r-cran-fansi (1.0.5-1) ... 238s Setting up r-cran-mass (7.3-60.0.1-1) ... 238s Setting up r-cran-snow (1:0.4.4-2) ... 238s Setting up r-cran-glue (1.7.0-1) ... 238s Setting up r-cran-bit (4.0.5-1) ... 238s Setting up r-cran-xtable (1:1.8-4-2) ... 238s Setting up r-cran-cli (3.6.2-1) ... 238s Setting up gfortran (4:13.2.0-7ubuntu1) ... 238s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 238s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 238s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 238s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 238s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 238s Setting up r-cran-bitops (1.0-7-1) ... 238s Setting up r-cran-bit64 (4.0.5-1) ... 238s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 238s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 238s Setting up r-cran-deldir (2.0-4-1) ... 238s Setting up r-cran-askpass (1.2.0-1) ... 238s Setting up r-cran-fastmap (1.1.1-1) ... 238s Setting up r-cran-png (0.1-8-1) ... 238s Setting up r-bioc-biobase (2.62.0-1) ... 238s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 238s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 238s Setting up r-cran-utf8 (1.2.4-1) ... 238s Setting up r-cran-stringi (1.8.3-1) ... 238s Setting up texlive-latex-base (2023.20240207-1) ... 238s Setting up r-cran-hwriter (1.3.2.1-1) ... 238s Setting up r-cran-cpp11 (0.4.7-1) ... 238s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 238s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 238s Setting up r-cran-runit (0.4.32-3) ... 238s Setting up r-cran-futile.logger (1.4.3-4build1) ... 238s Setting up r-cran-later (1.3.2+dfsg-1) ... 238s Setting up r-cran-matrix (1.6-5-1) ... 238s Setting up r-cran-tinytex (0.49-1) ... 238s Setting up r-cran-knitr (1.45+dfsg-1) ... 238s Setting up g++ (4:13.2.0-7ubuntu1) ... 238s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 238s Setting up r-cran-cachem (1.0.8-1) ... 238s Setting up build-essential (12.10ubuntu1) ... 238s Setting up r-bioc-iranges (2.36.0-1) ... 238s Setting up r-cran-rjson (0.2.21-1) ... 238s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 238s Setting up r-cran-restfulr (0.0.15-1) ... 238s Setting up r-cran-vctrs (0.6.5-1) ... 238s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 238s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 238s Setting up r-cran-ellipsis (0.3.2-2) ... 238s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 238s Setting up r-base-dev (4.3.3-2build1) ... 238s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 238s Setting up r-cran-stringr (1.5.1-1) ... 238s Setting up r-bioc-biocparallel (1.36.0-1) ... 238s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 238s Setting up r-cran-xml2 (1.3.6-1) ... 238s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 238s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 238s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 238s Setting up texlive-bibtex-extra (2023.20240207-1) ... 238s Setting up r-cran-interp (1.1-6-1) ... 238s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 238s Setting up r-cran-httr (1.4.7+dfsg-1) ... 238s Setting up r-cran-hms (1.1.3-1) ... 238s Setting up r-cran-memoise (2.0.1-1) ... 238s Setting up r-cran-promises (1.2.1+dfsg-1) ... 238s Setting up r-cran-purrr (1.0.2-1) ... 238s Setting up r-cran-blob (1.2.4-1) ... 238s Setting up r-cran-htmltools (0.5.7-1) ... 238s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 238s Setting up r-bioc-xvector (0.42.0-1) ... 238s Setting up r-cran-sass (0.4.8+dfsg-1) ... 238s Setting up r-cran-dplyr (1.1.4-1) ... 238s Setting up r-cran-rsqlite (2.3.4-1) ... 238s Setting up r-cran-progress (1.2.3-1) ... 238s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 238s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 238s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 238s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 238s Setting up r-cran-fontawesome (0.5.2-1) ... 238s Setting up r-cran-latticeextra (0.6-30-1) ... 238s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 238s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 238s Setting up r-cran-tidyr (1.3.1-1) ... 238s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 238s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 238s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 238s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 238s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 238s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 238s Setting up r-bioc-annotationdbi (1.64.1-1) ... 238s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 238s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 238s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 238s Setting up r-bioc-genomicalignments (1.38.2-1) ... 238s Setting up r-cran-bookdown (0.37+dfsg-1) ... 238s Setting up r-bioc-rtracklayer (1.62.0-1) ... 238s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 238s Setting up r-bioc-shortread (1.60.0-2) ... 238s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 238s Setting up autopkgtest-satdep (0) ... 238s Processing triggers for man-db (2.12.0-3) ... 239s Processing triggers for install-info (7.1-3) ... 239s Processing triggers for libc-bin (2.39-0ubuntu2) ... 239s Processing triggers for tex-common (6.18) ... 240s Running updmap-sys. This may take some time... done. 240s Running mktexlsr /var/lib/texmf ... done. 240s Building format(s) --all. 278s This may take some time... done. 293s (Reading database ... 124945 files and directories currently installed.) 293s Removing autopkgtest-satdep (0) ... 294s autopkgtest [17:49:44]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 294s autopkgtest [17:49:44]: test pkg-r-autopkgtest: [----------------------- 294s Test: Try to load the R library ShortRead 295s 295s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 295s Copyright (C) 2024 The R Foundation for Statistical Computing 295s Platform: aarch64-unknown-linux-gnu (64-bit) 295s 295s R is free software and comes with ABSOLUTELY NO WARRANTY. 295s You are welcome to redistribute it under certain conditions. 295s Type 'license()' or 'licence()' for distribution details. 295s 295s R is a collaborative project with many contributors. 295s Type 'contributors()' for more information and 295s 'citation()' on how to cite R or R packages in publications. 295s 295s Type 'demo()' for some demos, 'help()' for on-line help, or 295s 'help.start()' for an HTML browser interface to help. 295s Type 'q()' to quit R. 295s 295s > library('ShortRead') 295s Loading required package: BiocGenerics 295s 295s Attaching package: ‘BiocGenerics’ 295s 295s The following objects are masked from ‘package:stats’: 295s 295s IQR, mad, sd, var, xtabs 295s 295s The following objects are masked from ‘package:base’: 295s 295s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 295s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 295s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 295s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 295s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 295s table, tapply, union, unique, unsplit, which.max, which.min 295s 295s Loading required package: BiocParallel 295s Loading required package: Biostrings 295s Loading required package: S4Vectors 295s Loading required package: stats4 296s 296s Attaching package: ‘S4Vectors’ 296s 296s The following object is masked from ‘package:utils’: 296s 296s findMatches 296s 296s The following objects are masked from ‘package:base’: 296s 296s expand.grid, I, unname 296s 296s Loading required package: IRanges 296s Loading required package: XVector 297s Loading required package: GenomeInfoDb 297s 297s Attaching package: ‘Biostrings’ 297s 297s The following object is masked from ‘package:base’: 297s 297s strsplit 297s 297s Loading required package: Rsamtools 297s Loading required package: GenomicRanges 298s Loading required package: GenomicAlignments 298s Loading required package: SummarizedExperiment 298s Loading required package: MatrixGenerics 298s Loading required package: matrixStats 298s 298s Attaching package: ‘MatrixGenerics’ 298s 298s The following objects are masked from ‘package:matrixStats’: 298s 298s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 298s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 298s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 298s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 298s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 298s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 298s colWeightedMeans, colWeightedMedians, colWeightedSds, 298s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 298s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 298s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 298s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 298s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 298s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 298s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 298s rowWeightedSds, rowWeightedVars 298s 298s Loading required package: Biobase 298s Welcome to Bioconductor 298s 298s Vignettes contain introductory material; view with 298s 'browseVignettes()'. To cite Bioconductor, see 298s 'citation("Biobase")', and for packages 'citation("pkgname")'. 298s 298s 298s Attaching package: ‘Biobase’ 298s 298s The following object is masked from ‘package:MatrixGenerics’: 298s 298s rowMedians 298s 298s The following objects are masked from ‘package:matrixStats’: 298s 298s anyMissing, rowMedians 298s 303s > 303s > 303s Other tests are currently unsupported! 303s They will be progressively added. 304s autopkgtest [17:49:54]: test pkg-r-autopkgtest: -----------------------] 305s pkg-r-autopkgtest PASS 305s autopkgtest [17:49:55]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 305s autopkgtest [17:49:55]: @@@@@@@@@@@@@@@@@@@@ summary 305s pkg-r-autopkgtest PASS 316s Creating nova instance adt-noble-arm64-r-bioc-shortread-20240316-174450-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...