0s autopkgtest [13:47:47]: starting date and time: 2024-03-16 13:47:47+0000 0s autopkgtest [13:47:47]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:47:47]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.mf26dehf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-15.secgroup --name adt-noble-arm64-r-bioc-shortread-20240316-134747-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 208s autopkgtest [13:51:15]: testbed dpkg architecture: arm64 209s autopkgtest [13:51:16]: testbed apt version: 2.7.12 209s autopkgtest [13:51:16]: @@@@@@@@@@@@@@@@@@@@ test bed setup 211s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 212s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 213s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 217s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 217s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 217s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 217s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 217s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 217s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 217s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 220s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 220s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 220s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 234s Fetched 9092 kB in 11s (810 kB/s) 236s Reading package lists... 247s Reading package lists... 248s Building dependency tree... 248s Reading state information... 250s Calculating upgrade... 251s The following packages will be REMOVED: 251s libssl3 251s The following NEW packages will be installed: 251s libssl3t64 251s The following packages have been kept back: 251s curl 251s The following packages will be upgraded: 251s openssl 257s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 257s Need to get 2753 kB of archives. 257s After this operation, 72.7 kB of additional disk space will be used. 257s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 257s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 261s Fetched 2753 kB in 7s (411 kB/s) 262s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 262s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 262s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 262s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 262s wget depends on libssl3 (>= 3.0.0). 262s u-boot-tools depends on libssl3 (>= 3.0.0). 262s tnftp depends on libssl3 (>= 3.0.0). 262s tcpdump depends on libssl3 (>= 3.0.0). 262s systemd-resolved depends on libssl3 (>= 3.0.0). 262s systemd depends on libssl3 (>= 3.0.0). 262s sudo depends on libssl3 (>= 3.0.0). 262s sbsigntool depends on libssl3 (>= 3.0.0). 262s rsync depends on libssl3 (>= 3.0.0). 262s python3-cryptography depends on libssl3 (>= 3.0.0). 263s openssh-server depends on libssl3 (>= 3.0.10). 263s openssh-client depends on libssl3 (>= 3.0.10). 263s mtd-utils depends on libssl3 (>= 3.0.0). 263s mokutil depends on libssl3 (>= 3.0.0). 263s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 263s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 263s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 263s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 263s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 263s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 263s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 263s libnvme1 depends on libssl3 (>= 3.0.0). 263s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 263s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 263s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 263s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 263s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 263s kmod depends on libssl3 (>= 3.0.0). 263s dhcpcd-base depends on libssl3 (>= 3.0.0). 263s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 263s 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 263s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 263s Selecting previously unselected package libssl3t64:arm64. 263s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 263s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 263s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 263s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 263s Setting up openssl (3.0.13-0ubuntu1) ... 263s Processing triggers for man-db (2.12.0-3) ... 267s Processing triggers for libc-bin (2.39-0ubuntu2) ... 269s Reading package lists... 270s Building dependency tree... 270s Reading state information... 273s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 275s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 275s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 275s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 275s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 285s Reading package lists... 285s Reading package lists... 286s Building dependency tree... 286s Reading state information... 289s Calculating upgrade... 291s The following packages have been kept back: 291s curl 291s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 291s Reading package lists... 293s Building dependency tree... 293s Reading state information... 296s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 302s autopkgtest [13:52:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 303s autopkgtest [13:52:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 310s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (dsc) [2387 B] 310s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (tar) [5223 kB] 310s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (diff) [5876 B] 311s gpgv: Signature made Mon Dec 18 09:06:56 2023 UTC 311s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 311s gpgv: issuer "tille@debian.org" 311s gpgv: Can't check signature: No public key 311s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.60.0-2.dsc: no acceptable signature found 312s autopkgtest [13:52:59]: testing package r-bioc-shortread version 1.60.0-2 312s autopkgtest [13:52:59]: build not needed 318s autopkgtest [13:53:05]: test pkg-r-autopkgtest: preparing testbed 321s Reading package lists... 322s Building dependency tree... 322s Reading state information... 324s Starting pkgProblemResolver with broken count: 0 324s Starting 2 pkgProblemResolver with broken count: 0 324s Done 327s The following additional packages will be installed: 327s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 327s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 327s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 327s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 327s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 327s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 327s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 327s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 327s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 327s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 327s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 327s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 327s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 327s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 327s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 327s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 327s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 327s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 327s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 327s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 327s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 327s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 327s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 327s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 327s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 327s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 327s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 327s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 327s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 327s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 327s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 327s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 327s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 327s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 327s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 327s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 327s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 327s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 327s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 327s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 327s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 327s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 327s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 327s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 327s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 327s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 327s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 327s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 327s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 327s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 327s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 327s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 327s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 327s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 327s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 327s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 327s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 327s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 327s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 327s Suggested packages: 327s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 327s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 327s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 327s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 327s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 327s libboost-context1.83-dev libboost-contract1.83-dev 327s libboost-coroutine1.83-dev libboost-date-time1.83-dev 327s libboost-exception1.83-dev libboost-fiber1.83-dev 327s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 327s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 327s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 327s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 327s libboost-numpy1.83-dev libboost-program-options1.83-dev 327s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 327s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 327s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 327s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 327s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 327s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 327s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 327s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 327s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 327s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 327s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 327s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 327s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 327s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 327s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 327s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 327s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 327s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 327s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 327s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 327s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 327s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 327s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 327s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 327s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 327s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 327s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 327s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 327s Recommended packages: 327s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 327s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 327s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 327s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 327s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 327s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 327s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 327s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 327s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 327s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 327s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 327s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 327s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 327s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 327s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 327s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 327s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 328s The following packages will be REMOVED: 328s libcurl4 libpsl5 328s The following NEW packages will be installed: 328s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 328s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 328s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 328s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 328s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 328s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 328s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 328s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 328s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 328s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 328s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 328s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 328s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 328s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 328s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 328s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 328s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 328s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 328s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 328s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 328s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 328s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 328s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 328s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 328s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 328s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 328s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 328s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 328s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 328s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 328s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 328s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 328s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 328s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 328s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 328s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 328s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 328s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 328s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 328s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 328s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 328s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 328s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 328s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 328s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 328s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 328s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 328s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 328s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 328s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 328s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 328s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 328s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 328s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 328s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 328s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 328s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 328s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 328s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 328s The following packages will be upgraded: 328s curl 328s 1 upgraded, 287 newly installed, 2 to remove and 0 not upgraded. 328s Need to get 427 MB/427 MB of archives. 328s After this operation, 1353 MB of additional disk space will be used. 328s Get:1 /tmp/autopkgtest.Aw4JsJ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 328s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 329s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 329s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 329s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 329s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 329s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 329s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 329s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 330s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 330s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 330s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 330s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 330s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 333s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 333s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 333s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 333s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 333s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 333s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 333s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 333s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 333s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 334s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 334s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 334s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 335s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 335s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 341s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 341s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 341s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 341s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 342s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 348s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 348s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 348s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 348s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 348s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 348s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 348s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 348s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 348s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 348s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 348s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 349s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 349s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 351s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 352s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 352s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 352s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 358s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 358s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 358s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 358s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 358s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 358s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 359s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 359s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 359s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 359s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 359s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 368s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 368s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 368s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 368s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 368s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 368s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 368s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 368s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 368s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 369s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 369s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 369s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 369s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 369s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 375s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 375s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 375s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 375s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 375s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 375s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 375s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 375s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 375s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 375s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 375s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 375s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 376s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 376s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 376s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 376s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 376s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 376s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 376s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 376s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 376s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 376s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 377s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 379s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 379s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 379s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 379s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 379s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 380s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 380s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 380s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 380s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 380s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 380s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 380s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 380s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 380s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 381s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 381s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 382s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 382s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 382s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 382s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 382s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 382s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 382s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 382s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 383s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 383s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 384s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 384s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 384s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 384s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 384s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 384s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 385s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 385s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 385s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 385s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 385s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 385s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 385s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 385s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 385s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 385s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 399s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 399s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 399s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 399s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 399s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 399s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 399s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 409s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 409s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 409s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 409s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 409s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 409s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 409s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 409s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 410s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 411s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 412s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 412s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 412s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 412s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 413s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 413s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 413s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 413s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 414s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 414s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 414s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 414s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 414s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 414s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 414s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 414s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 414s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 414s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 414s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 414s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 414s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 414s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 414s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 414s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 414s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 415s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 415s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 415s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 415s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 415s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 418s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 419s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 419s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 421s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 421s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 422s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 422s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 422s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 422s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 422s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 422s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 422s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 422s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 422s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 423s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 423s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 423s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 423s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 423s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 424s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 424s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 424s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 424s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 424s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 424s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 424s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 424s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 424s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 424s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 424s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 424s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 424s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 424s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 424s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 424s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 424s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 424s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 424s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 424s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 425s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 425s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 425s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 425s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 425s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 425s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 425s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 425s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 426s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 426s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 426s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 426s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 426s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 426s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 426s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 426s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 426s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 426s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 426s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 426s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 426s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 426s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 426s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 426s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 426s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 427s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 429s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 429s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 435s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 435s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 435s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 435s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 435s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 435s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 435s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 435s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 435s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 435s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 435s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 435s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 435s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 435s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 435s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 435s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 436s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 436s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 436s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 436s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 436s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 436s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 436s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 437s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 437s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 437s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 437s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 437s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 437s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 437s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 437s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 437s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 437s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 437s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 442s Preconfiguring packages ... 442s Fetched 427 MB in 1min 49s (3910 kB/s) 442s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 442s wget depends on libpsl5 (>= 0.16.0). 442s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 442s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 442s 442s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 442s Removing libpsl5:arm64 (0.21.2-1build1) ... 443s Selecting previously unselected package libpsl5t64:arm64. 443s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 443s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 443s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 443s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 443s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 444s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 444s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 444s Selecting previously unselected package libcurl4t64:arm64. 444s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 444s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 444s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 444s Selecting previously unselected package libc-dev-bin. 444s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 444s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 444s Selecting previously unselected package linux-libc-dev:arm64. 444s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 444s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 445s Selecting previously unselected package libcrypt-dev:arm64. 446s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 446s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 446s Selecting previously unselected package libtirpc-dev:arm64. 446s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 446s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 446s Selecting previously unselected package libnsl-dev:arm64. 446s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 446s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 446s Selecting previously unselected package rpcsvc-proto. 446s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 446s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 446s Selecting previously unselected package libc6-dev:arm64. 446s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 446s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 447s Selecting previously unselected package libisl23:arm64. 447s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 447s Unpacking libisl23:arm64 (0.26-3) ... 448s Selecting previously unselected package libmpc3:arm64. 448s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 448s Unpacking libmpc3:arm64 (1.3.1-1) ... 448s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 448s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 448s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 450s Selecting previously unselected package cpp-13. 450s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 450s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 450s Selecting previously unselected package cpp-aarch64-linux-gnu. 450s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 450s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 450s Selecting previously unselected package cpp. 450s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 450s Unpacking cpp (4:13.2.0-7ubuntu1) ... 450s Selecting previously unselected package libcc1-0:arm64. 450s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libgomp1:arm64. 450s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 450s Selecting previously unselected package libitm1:arm64. 450s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 450s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libatomic1:arm64. 451s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libasan8:arm64. 451s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package liblsan0:arm64. 451s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 451s Selecting previously unselected package libtsan2:arm64. 451s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 451s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 452s Selecting previously unselected package libubsan1:arm64. 452s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 452s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 452s Selecting previously unselected package libhwasan0:arm64. 452s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 452s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 452s Selecting previously unselected package libgcc-13-dev:arm64. 452s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 452s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 453s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 453s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 453s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 455s Selecting previously unselected package gcc-13. 455s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 455s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 455s Selecting previously unselected package gcc-aarch64-linux-gnu. 455s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 455s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 455s Selecting previously unselected package gcc. 455s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 455s Unpacking gcc (4:13.2.0-7ubuntu1) ... 456s Selecting previously unselected package libstdc++-13-dev:arm64. 456s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 456s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 457s Selecting previously unselected package g++-13-aarch64-linux-gnu. 457s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 457s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 458s Selecting previously unselected package g++-13. 458s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 458s Unpacking g++-13 (13.2.0-17ubuntu2) ... 458s Selecting previously unselected package g++-aarch64-linux-gnu. 458s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 458s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 459s Selecting previously unselected package g++. 459s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 459s Unpacking g++ (4:13.2.0-7ubuntu1) ... 459s Selecting previously unselected package build-essential. 459s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 459s Unpacking build-essential (12.10ubuntu1) ... 459s Selecting previously unselected package dctrl-tools. 459s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 459s Unpacking dctrl-tools (2.24-3build2) ... 459s Selecting previously unselected package fonts-dejavu-mono. 459s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 459s Unpacking fonts-dejavu-mono (2.37-8) ... 459s Selecting previously unselected package fonts-dejavu-core. 459s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 459s Unpacking fonts-dejavu-core (2.37-8) ... 460s Selecting previously unselected package fontconfig-config. 460s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 461s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 461s Selecting previously unselected package libfontconfig1:arm64. 461s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 461s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 461s Selecting previously unselected package fontconfig. 461s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 461s Unpacking fontconfig (2.15.0-1ubuntu1) ... 462s Selecting previously unselected package fonts-font-awesome. 462s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 462s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 462s Selecting previously unselected package fonts-glyphicons-halflings. 462s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 462s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 462s Selecting previously unselected package fonts-lmodern. 462s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 462s Unpacking fonts-lmodern (2.005-1) ... 463s Selecting previously unselected package fonts-mathjax. 463s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 463s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 464s Selecting previously unselected package libgfortran5:arm64. 464s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 464s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 464s Selecting previously unselected package libgfortran-13-dev:arm64. 465s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 465s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 465s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 465s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 465s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 466s Selecting previously unselected package gfortran-13. 466s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 466s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 466s Selecting previously unselected package gfortran-aarch64-linux-gnu. 466s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 466s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 466s Selecting previously unselected package gfortran. 466s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 466s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 466s Selecting previously unselected package icu-devtools. 466s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 466s Unpacking icu-devtools (74.2-1ubuntu1) ... 467s Selecting previously unselected package javascript-common. 467s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 467s Unpacking javascript-common (11+nmu1) ... 467s Selecting previously unselected package libio-string-perl. 467s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 467s Unpacking libio-string-perl (1.08-4) ... 467s Selecting previously unselected package liblatex-tounicode-perl. 467s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 467s Unpacking liblatex-tounicode-perl (0.54-2) ... 467s Selecting previously unselected package libbibtex-parser-perl. 467s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 467s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 467s Selecting previously unselected package libblas3:arm64. 467s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 467s Unpacking libblas3:arm64 (3.12.0-3) ... 467s Selecting previously unselected package libblas-dev:arm64. 467s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 467s Unpacking libblas-dev:arm64 (3.12.0-3) ... 467s Selecting previously unselected package libboost1.83-dev:arm64. 467s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 467s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 484s Selecting previously unselected package libboost-dev:arm64. 484s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 484s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 485s Selecting previously unselected package libbz2-dev:arm64. 485s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 485s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 485s Selecting previously unselected package libpixman-1-0:arm64. 485s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 485s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 485s Selecting previously unselected package libxcb-render0:arm64. 485s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 485s Unpacking libxcb-render0:arm64 (1.15-1) ... 485s Selecting previously unselected package libxcb-shm0:arm64. 485s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 485s Unpacking libxcb-shm0:arm64 (1.15-1) ... 485s Selecting previously unselected package libxrender1:arm64. 485s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 485s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 485s Selecting previously unselected package libcairo2:arm64. 485s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 485s Unpacking libcairo2:arm64 (1.18.0-1) ... 485s Selecting previously unselected package libdatrie1:arm64. 485s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 485s Unpacking libdatrie1:arm64 (0.2.13-3) ... 485s Selecting previously unselected package libdeflate0:arm64. 486s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 486s Unpacking libdeflate0:arm64 (1.19-1) ... 486s Selecting previously unselected package libgraphite2-3:arm64. 486s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 486s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 486s Selecting previously unselected package libharfbuzz0b:arm64. 486s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 486s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 486s Selecting previously unselected package x11-common. 486s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 486s Unpacking x11-common (1:7.7+23ubuntu2) ... 486s Selecting previously unselected package libice6:arm64. 486s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 487s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 487s Selecting previously unselected package libicu-dev:arm64. 487s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 487s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 488s Selecting previously unselected package libjpeg-turbo8:arm64. 488s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 488s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 488s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 488s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 488s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 488s Selecting previously unselected package libjpeg8:arm64. 488s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 488s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 488s Selecting previously unselected package libjpeg8-dev:arm64. 488s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 488s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 488s Selecting previously unselected package libjpeg-dev:arm64. 489s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 489s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 489s Selecting previously unselected package libjs-bootstrap. 489s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 489s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 489s Selecting previously unselected package libjs-popper.js. 489s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 489s Unpacking libjs-popper.js (1.16.1+ds-6) ... 489s Selecting previously unselected package libjs-bootstrap4. 489s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 489s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 490s Selecting previously unselected package libjs-d3. 490s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 490s Unpacking libjs-d3 (3.5.17-4) ... 490s Selecting previously unselected package libjs-es5-shim. 490s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 490s Unpacking libjs-es5-shim (4.6.7-2) ... 490s Selecting previously unselected package libjs-highlight.js. 490s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 490s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 490s Selecting previously unselected package libjs-jquery. 490s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 490s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 490s Selecting previously unselected package libjs-jquery-datatables. 490s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 490s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 491s Selecting previously unselected package libjs-sifter.js. 491s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 491s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 491s Selecting previously unselected package libjs-microplugin.js. 491s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 491s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 491s Selecting previously unselected package libjs-jquery-selectize.js. 491s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 491s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 491s Selecting previously unselected package libjs-jquery-ui. 491s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 491s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 492s Selecting previously unselected package libjs-json. 492s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 492s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 492s Selecting previously unselected package libjs-lunr. 492s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 492s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 492s Selecting previously unselected package libjs-prettify. 492s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 492s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 492s Selecting previously unselected package libkpathsea6:arm64. 492s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 492s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 492s Selecting previously unselected package liblapack3:arm64. 492s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 492s Unpacking liblapack3:arm64 (3.12.0-3) ... 493s Selecting previously unselected package liblapack-dev:arm64. 493s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 493s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 494s Selecting previously unselected package liblerc4:arm64. 494s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 494s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 494s Selecting previously unselected package liblua5.4-0:arm64. 494s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 494s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 494s Selecting previously unselected package libncurses-dev:arm64. 494s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 494s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 494s Selecting previously unselected package libthai-data. 494s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 494s Unpacking libthai-data (0.1.29-2) ... 495s Selecting previously unselected package libthai0:arm64. 495s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 495s Unpacking libthai0:arm64 (0.1.29-2) ... 495s Selecting previously unselected package libpango-1.0-0:arm64. 495s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 495s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 495s Selecting previously unselected package libpangoft2-1.0-0:arm64. 495s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 495s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 495s Selecting previously unselected package libpangocairo-1.0-0:arm64. 495s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 495s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 495s Selecting previously unselected package libpaper1:arm64. 496s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 496s Unpacking libpaper1:arm64 (1.1.29) ... 496s Selecting previously unselected package libpaper-utils. 496s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 496s Unpacking libpaper-utils (1.1.29) ... 496s Selecting previously unselected package libpcre2-16-0:arm64. 496s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 496s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 496s Selecting previously unselected package libpcre2-32-0:arm64. 496s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 496s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 496s Selecting previously unselected package libpcre2-posix3:arm64. 496s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 496s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 497s Selecting previously unselected package libpcre2-dev:arm64. 497s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 497s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 497s Selecting previously unselected package libpkgconf3:arm64. 497s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 497s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 497s Selecting previously unselected package zlib1g-dev:arm64. 498s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 498s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 498s Selecting previously unselected package libpng-dev:arm64. 498s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 498s Unpacking libpng-dev:arm64 (1.6.43-1) ... 498s Selecting previously unselected package libpotrace0:arm64. 498s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 498s Unpacking libpotrace0:arm64 (1.16-2) ... 498s Selecting previously unselected package libptexenc1:arm64. 498s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 498s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 498s Selecting previously unselected package libreadline-dev:arm64. 498s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 498s Unpacking libreadline-dev:arm64 (8.2-3) ... 498s Selecting previously unselected package libsharpyuv0:arm64. 498s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 498s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 499s Selecting previously unselected package libsm6:arm64. 499s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 499s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 499s Selecting previously unselected package libsynctex2:arm64. 499s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 499s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 499s Selecting previously unselected package libtcl8.6:arm64. 499s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 499s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 499s Selecting previously unselected package libteckit0:arm64. 499s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 499s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 499s Selecting previously unselected package libtexlua53-5:arm64. 500s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 500s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 500s Selecting previously unselected package libjbig0:arm64. 500s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 500s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 500s Selecting previously unselected package libwebp7:arm64. 500s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 500s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 500s Selecting previously unselected package libtiff6:arm64. 500s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 500s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 500s Selecting previously unselected package libxft2:arm64. 500s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 500s Unpacking libxft2:arm64 (2.3.6-1) ... 500s Selecting previously unselected package libxss1:arm64. 500s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 500s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 500s Selecting previously unselected package libtk8.6:arm64. 501s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 501s Unpacking libtk8.6:arm64 (8.6.13-2) ... 501s Selecting previously unselected package libxt6:arm64. 501s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 501s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 501s Selecting previously unselected package libxmu6:arm64. 501s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 501s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 501s Selecting previously unselected package libxpm4:arm64. 501s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 501s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 501s Selecting previously unselected package libxaw7:arm64. 501s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 501s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 502s Selecting previously unselected package libxi6:arm64. 502s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 502s Unpacking libxi6:arm64 (2:1.8.1-1) ... 502s Selecting previously unselected package libzzip-0-13:arm64. 502s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 502s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 502s Selecting previously unselected package zip. 502s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 502s Unpacking zip (3.0-13) ... 502s Selecting previously unselected package unzip. 502s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 502s Unpacking unzip (6.0-28ubuntu3) ... 502s Selecting previously unselected package xdg-utils. 502s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 502s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 502s Selecting previously unselected package r-base-core. 502s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 503s Unpacking r-base-core (4.3.2-1build1) ... 505s Selecting previously unselected package r-cran-littler. 505s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 505s Unpacking r-cran-littler (0.3.19-1) ... 505s Selecting previously unselected package littler. 505s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 505s Unpacking littler (0.3.19-1) ... 505s Selecting previously unselected package node-bootstrap-sass. 505s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 505s Unpacking node-bootstrap-sass (3.4.3-2) ... 506s Selecting previously unselected package node-html5shiv. 506s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 506s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 506s Selecting previously unselected package node-normalize.css. 506s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 506s Unpacking node-normalize.css (8.0.1-5) ... 506s Selecting previously unselected package pandoc-data. 506s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 506s Unpacking pandoc-data (3.1.3-1) ... 506s Selecting previously unselected package pandoc. 507s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 507s Unpacking pandoc (3.1.3+ds-2) ... 514s Selecting previously unselected package pkgconf-bin. 514s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 514s Unpacking pkgconf-bin (1.8.1-2) ... 514s Selecting previously unselected package pkgconf:arm64. 514s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 514s Unpacking pkgconf:arm64 (1.8.1-2) ... 514s Selecting previously unselected package pkg-config:arm64. 515s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 515s Unpacking pkg-config:arm64 (1.8.1-2) ... 515s Selecting previously unselected package liblzma-dev:arm64. 515s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 515s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 515s Selecting previously unselected package r-base-dev. 515s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 515s Unpacking r-base-dev (4.3.2-1build1) ... 515s Selecting previously unselected package pkg-r-autopkgtest. 515s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 515s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 515s Selecting previously unselected package r-bioc-biocgenerics. 515s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 515s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 515s Selecting previously unselected package r-bioc-biobase. 516s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 516s Unpacking r-bioc-biobase (2.62.0-1) ... 516s Selecting previously unselected package r-bioc-s4vectors. 516s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 516s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 517s Selecting previously unselected package r-bioc-iranges. 517s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 517s Unpacking r-bioc-iranges (2.36.0-1) ... 517s Selecting previously unselected package r-cran-dbi. 517s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 517s Unpacking r-cran-dbi (1.2.2-1) ... 518s Selecting previously unselected package r-cran-bit. 518s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 518s Unpacking r-cran-bit (4.0.5-1) ... 518s Selecting previously unselected package r-cran-bit64. 518s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 518s Unpacking r-cran-bit64 (4.0.5-1) ... 518s Selecting previously unselected package r-cran-rlang. 518s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 518s Unpacking r-cran-rlang (1.1.3-1) ... 519s Selecting previously unselected package r-cran-cli. 519s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 519s Unpacking r-cran-cli (3.6.2-1) ... 519s Selecting previously unselected package r-cran-glue. 519s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 519s Unpacking r-cran-glue (1.7.0-1) ... 519s Selecting previously unselected package r-cran-lifecycle. 519s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 519s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 520s Selecting previously unselected package r-cran-vctrs. 520s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 520s Unpacking r-cran-vctrs (0.6.5-1) ... 520s Selecting previously unselected package r-cran-blob. 520s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 520s Unpacking r-cran-blob (1.2.4-1) ... 520s Selecting previously unselected package r-cran-fastmap. 520s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 520s Unpacking r-cran-fastmap (1.1.1-1) ... 520s Selecting previously unselected package r-cran-cachem. 520s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 520s Unpacking r-cran-cachem (1.0.8-1) ... 521s Selecting previously unselected package r-cran-memoise. 521s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 521s Unpacking r-cran-memoise (2.0.1-1) ... 521s Selecting previously unselected package r-cran-pkgconfig. 521s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 521s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 521s Selecting previously unselected package r-cran-plogr. 521s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 521s Unpacking r-cran-plogr (0.2.0-3build1) ... 521s Selecting previously unselected package r-cran-cpp11. 522s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 522s Unpacking r-cran-cpp11 (0.4.7-1) ... 522s Selecting previously unselected package r-cran-rsqlite. 522s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 522s Unpacking r-cran-rsqlite (2.3.4-1) ... 522s Selecting previously unselected package r-cran-curl. 522s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 522s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 523s Selecting previously unselected package r-cran-jsonlite. 523s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 523s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 523s Selecting previously unselected package r-cran-mime. 523s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 523s Unpacking r-cran-mime (0.12-1) ... 523s Selecting previously unselected package r-cran-sys. 524s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 524s Unpacking r-cran-sys (3.4.2-1) ... 524s Selecting previously unselected package r-cran-askpass. 524s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 524s Unpacking r-cran-askpass (1.2.0-1) ... 524s Selecting previously unselected package r-cran-openssl. 524s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 524s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 525s Selecting previously unselected package r-cran-r6. 525s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 525s Unpacking r-cran-r6 (2.5.1-1) ... 525s Selecting previously unselected package r-cran-httr. 525s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 525s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 525s Selecting previously unselected package r-cran-png. 525s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 525s Unpacking r-cran-png (0.1-8-1) ... 525s Selecting previously unselected package r-bioc-zlibbioc. 526s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 526s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 526s Selecting previously unselected package r-bioc-xvector. 526s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 526s Unpacking r-bioc-xvector (0.42.0-1) ... 526s Selecting previously unselected package r-cran-bitops. 526s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 526s Unpacking r-cran-bitops (1.0-7-1) ... 526s Selecting previously unselected package r-cran-rcurl. 526s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 526s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 527s Selecting previously unselected package r-bioc-genomeinfodbdata. 527s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 527s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 528s Selecting previously unselected package r-bioc-genomeinfodb. 528s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 528s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 529s Selecting previously unselected package r-cran-crayon. 529s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 529s Unpacking r-cran-crayon (1.5.2-1) ... 529s Selecting previously unselected package r-bioc-biostrings. 529s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 529s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 530s Selecting previously unselected package r-bioc-keggrest. 530s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 530s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 530s Selecting previously unselected package r-bioc-annotationdbi. 530s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 530s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 530s Selecting previously unselected package r-cran-generics. 531s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 531s Unpacking r-cran-generics (0.1.3-1) ... 531s Selecting previously unselected package r-cran-magrittr. 531s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 531s Unpacking r-cran-magrittr (2.0.3-1) ... 531s Selecting previously unselected package r-cran-fansi. 531s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 531s Unpacking r-cran-fansi (1.0.5-1) ... 531s Selecting previously unselected package r-cran-utf8. 531s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 531s Unpacking r-cran-utf8 (1.2.4-1) ... 531s Selecting previously unselected package r-cran-pillar. 531s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 531s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 532s Selecting previously unselected package r-cran-tibble. 532s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 532s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 532s Selecting previously unselected package r-cran-withr. 532s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 532s Unpacking r-cran-withr (2.5.0-1) ... 532s Selecting previously unselected package r-cran-tidyselect. 532s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 532s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 533s Selecting previously unselected package r-cran-dplyr. 533s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 533s Unpacking r-cran-dplyr (1.1.4-1) ... 533s Selecting previously unselected package r-cran-purrr. 533s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 533s Unpacking r-cran-purrr (1.0.2-1) ... 533s Selecting previously unselected package r-cran-stringi. 533s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 533s Unpacking r-cran-stringi (1.8.3-1) ... 534s Selecting previously unselected package r-cran-stringr. 534s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 534s Unpacking r-cran-stringr (1.5.1-1) ... 534s Selecting previously unselected package r-cran-tidyr. 534s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 534s Unpacking r-cran-tidyr (1.3.1-1) ... 534s Selecting previously unselected package r-cran-dbplyr. 534s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 534s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 535s Selecting previously unselected package r-cran-filelock. 535s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 535s Unpacking r-cran-filelock (1.0.3-1) ... 535s Selecting previously unselected package r-bioc-biocfilecache. 535s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 535s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 535s Selecting previously unselected package r-bioc-biocio. 535s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 535s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 535s Selecting previously unselected package r-cran-formatr. 535s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 535s Unpacking r-cran-formatr (1.14-1) ... 535s Selecting previously unselected package r-cran-lambda.r. 535s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 535s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 536s Selecting previously unselected package r-cran-futile.options. 536s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 536s Unpacking r-cran-futile.options (1.0.1-3build1) ... 536s Selecting previously unselected package r-cran-futile.logger. 536s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 536s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 536s Selecting previously unselected package r-cran-snow. 536s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 536s Unpacking r-cran-snow (1:0.4.4-2) ... 536s Selecting previously unselected package r-cran-codetools. 536s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 536s Unpacking r-cran-codetools (0.2-19-1) ... 536s Selecting previously unselected package r-cran-bh. 536s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 536s Unpacking r-cran-bh (1.84.0-1) ... 537s Selecting previously unselected package r-bioc-biocparallel. 537s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 537s Unpacking r-bioc-biocparallel (1.36.0-1) ... 537s Selecting previously unselected package r-cran-base64enc. 537s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 537s Unpacking r-cran-base64enc (0.1-3-3) ... 537s Selecting previously unselected package r-cran-digest. 537s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 537s Unpacking r-cran-digest (0.6.34-1) ... 537s Selecting previously unselected package r-cran-ellipsis. 537s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 537s Unpacking r-cran-ellipsis (0.3.2-2) ... 538s Selecting previously unselected package r-cran-htmltools. 538s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 538s Unpacking r-cran-htmltools (0.5.7-1) ... 538s Selecting previously unselected package r-cran-evaluate. 538s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 538s Unpacking r-cran-evaluate (0.23-1) ... 538s Selecting previously unselected package r-cran-xfun. 538s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 538s Unpacking r-cran-xfun (0.41+dfsg-1) ... 538s Selecting previously unselected package r-cran-highr. 539s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 539s Unpacking r-cran-highr (0.10+dfsg-1) ... 539s Selecting previously unselected package r-cran-yaml. 539s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 539s Unpacking r-cran-yaml (2.3.8-1) ... 540s Selecting previously unselected package libjs-mathjax. 540s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 540s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 545s Selecting previously unselected package r-cran-knitr. 545s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 545s Unpacking r-cran-knitr (1.45+dfsg-1) ... 545s Selecting previously unselected package r-cran-jquerylib. 546s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 546s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 546s Selecting previously unselected package r-cran-fs. 546s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 546s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 546s Selecting previously unselected package r-cran-rappdirs. 546s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 546s Unpacking r-cran-rappdirs (0.3.3-1) ... 546s Selecting previously unselected package r-cran-sass. 546s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 546s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 546s Selecting previously unselected package r-cran-bslib. 546s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 546s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 547s Selecting previously unselected package r-cran-fontawesome. 547s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 547s Unpacking r-cran-fontawesome (0.5.2-1) ... 547s Selecting previously unselected package r-cran-tinytex. 548s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 548s Unpacking r-cran-tinytex (0.49-1) ... 548s Selecting previously unselected package libjs-modernizr. 548s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 548s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 548s Selecting previously unselected package r-cran-pkgkitten. 548s Preparing to unpack .../232-r-cran-pkgkitten_0.2.3-1_all.deb ... 548s Unpacking r-cran-pkgkitten (0.2.3-1) ... 548s Selecting previously unselected package r-cran-rcpp. 548s Preparing to unpack .../233-r-cran-rcpp_1.0.12-1_arm64.deb ... 548s Unpacking r-cran-rcpp (1.0.12-1) ... 549s Selecting previously unselected package r-cran-later. 549s Preparing to unpack .../234-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 549s Unpacking r-cran-later (1.3.2+dfsg-1) ... 549s Selecting previously unselected package r-cran-promises. 549s Preparing to unpack .../235-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 549s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 549s Selecting previously unselected package r-cran-httpuv. 549s Preparing to unpack .../236-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 549s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 550s Selecting previously unselected package r-cran-xtable. 550s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2_all.deb ... 550s Unpacking r-cran-xtable (1:1.8-4-2) ... 550s Selecting previously unselected package r-cran-sourcetools. 550s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 550s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 550s Selecting previously unselected package r-cran-commonmark. 550s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 550s Unpacking r-cran-commonmark (1.9.1-1) ... 551s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 551s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 551s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 551s Selecting previously unselected package r-cran-shiny. 551s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 551s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 552s Selecting previously unselected package r-cran-rmarkdown. 552s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 552s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 553s Selecting previously unselected package r-cran-bookdown. 553s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 553s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 554s Selecting previously unselected package r-cran-biocmanager. 554s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 554s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 554s Selecting previously unselected package tex-common. 554s Preparing to unpack .../245-tex-common_6.18_all.deb ... 554s Unpacking tex-common (6.18) ... 554s Selecting previously unselected package t1utils. 554s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 554s Unpacking t1utils (1.41-4build2) ... 554s Selecting previously unselected package texlive-binaries. 555s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 555s Unpacking texlive-binaries (2023.20230311.66589-9) ... 557s Selecting previously unselected package texlive-base. 557s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 557s Unpacking texlive-base (2023.20240207-1) ... 564s Selecting previously unselected package texlive-latex-base. 564s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 564s Unpacking texlive-latex-base (2023.20240207-1) ... 566s Selecting previously unselected package texlive-bibtex-extra. 566s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 566s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 585s Selecting previously unselected package r-bioc-biocstyle. 585s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 585s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 585s Selecting previously unselected package r-cran-xml. 585s Preparing to unpack .../252-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 585s Unpacking r-cran-xml (3.99-0.16.1-1) ... 586s Selecting previously unselected package r-cran-hms. 586s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 586s Unpacking r-cran-hms (1.1.3-1) ... 586s Selecting previously unselected package r-cran-prettyunits. 586s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 586s Unpacking r-cran-prettyunits (1.2.0-1) ... 586s Selecting previously unselected package r-cran-progress. 586s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 586s Unpacking r-cran-progress (1.2.3-1) ... 586s Selecting previously unselected package r-cran-xml2. 586s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 586s Unpacking r-cran-xml2 (1.3.6-1) ... 586s Selecting previously unselected package r-bioc-biomart. 586s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 586s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 587s Selecting previously unselected package r-cran-lattice. 587s Preparing to unpack .../258-r-cran-lattice_0.22-5-1_arm64.deb ... 587s Unpacking r-cran-lattice (0.22-5-1) ... 587s Selecting previously unselected package r-cran-matrix. 587s Preparing to unpack .../259-r-cran-matrix_1.6-5-1_arm64.deb ... 587s Unpacking r-cran-matrix (1.6-5-1) ... 587s Selecting previously unselected package r-cran-matrixstats. 587s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 587s Unpacking r-cran-matrixstats (1.2.0-1) ... 588s Selecting previously unselected package r-bioc-matrixgenerics. 588s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 588s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 588s Selecting previously unselected package r-cran-abind. 588s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 588s Unpacking r-cran-abind (1.4-5-2) ... 588s Selecting previously unselected package r-bioc-s4arrays. 588s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 588s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 589s Selecting previously unselected package r-bioc-sparsearray. 589s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 589s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 589s Selecting previously unselected package r-bioc-delayedarray. 589s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 589s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 589s Selecting previously unselected package r-bioc-genomicranges. 589s Preparing to unpack .../266-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 589s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 589s Selecting previously unselected package r-bioc-summarizedexperiment. 589s Preparing to unpack .../267-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 589s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 590s Selecting previously unselected package r-bioc-rhtslib. 590s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 590s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 590s Selecting previously unselected package r-bioc-rsamtools. 590s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 590s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 591s Selecting previously unselected package r-bioc-genomicalignments. 591s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 591s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 591s Selecting previously unselected package r-cran-rjson. 591s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 591s Unpacking r-cran-rjson (0.2.21-1) ... 591s Selecting previously unselected package r-cran-restfulr. 591s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 591s Unpacking r-cran-restfulr (0.0.15-1) ... 592s Selecting previously unselected package r-bioc-rtracklayer. 592s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 592s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 592s Selecting previously unselected package r-bioc-genomicfeatures. 592s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 592s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 592s Selecting previously unselected package r-cran-hwriter. 592s Preparing to unpack .../275-r-cran-hwriter_1.3.2.1-1_all.deb ... 592s Unpacking r-cran-hwriter (1.3.2.1-1) ... 593s Selecting previously unselected package r-cran-jpeg. 593s Preparing to unpack .../276-r-cran-jpeg_0.1-10-1_arm64.deb ... 593s Unpacking r-cran-jpeg (0.1-10-1) ... 593s Selecting previously unselected package r-cran-rcolorbrewer. 593s Preparing to unpack .../277-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 593s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 593s Selecting previously unselected package r-cran-deldir. 593s Preparing to unpack .../278-r-cran-deldir_2.0-4-1_arm64.deb ... 593s Unpacking r-cran-deldir (2.0-4-1) ... 593s Selecting previously unselected package r-cran-rcppeigen. 593s Preparing to unpack .../279-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 593s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 594s Selecting previously unselected package r-cran-interp. 594s Preparing to unpack .../280-r-cran-interp_1.1-6-1_arm64.deb ... 594s Unpacking r-cran-interp (1.1-6-1) ... 594s Selecting previously unselected package r-cran-mass. 594s Preparing to unpack .../281-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 594s Unpacking r-cran-mass (7.3-60.0.1-1) ... 595s Selecting previously unselected package r-cran-latticeextra. 595s Preparing to unpack .../282-r-cran-latticeextra_0.6-30-1_all.deb ... 595s Unpacking r-cran-latticeextra (0.6-30-1) ... 595s Selecting previously unselected package r-bioc-shortread. 595s Preparing to unpack .../283-r-bioc-shortread_1.60.0-2_arm64.deb ... 595s Unpacking r-bioc-shortread (1.60.0-2) ... 595s Selecting previously unselected package r-cran-runit. 595s Preparing to unpack .../284-r-cran-runit_0.4.32-3_all.deb ... 595s Unpacking r-cran-runit (0.4.32-3) ... 595s Selecting previously unselected package autopkgtest-satdep. 595s Preparing to unpack .../285-1-autopkgtest-satdep.deb ... 595s Unpacking autopkgtest-satdep (0) ... 596s Setting up libjs-json (0~20221030+~1.0.8-1) ... 596s Setting up javascript-common (11+nmu1) ... 596s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 596s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 596s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 596s Setting up libpaper1:arm64 (1.1.29) ... 597s 597s Creating config file /etc/papersize with new version 597s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 597s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 597s Setting up libxpm4:arm64 (1:3.5.17-1) ... 597s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 597s Setting up libxi6:arm64 (2:1.8.1-1) ... 597s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 597s Setting up libdatrie1:arm64 (0.2.13-3) ... 597s Setting up libjs-popper.js (1.16.1+ds-6) ... 597s Setting up libxcb-render0:arm64 (1.15-1) ... 597s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 597s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 597s Setting up libjs-lunr (2.3.9~dfsg-2) ... 597s Setting up unzip (6.0-28ubuntu3) ... 597s Setting up liblatex-tounicode-perl (0.54-2) ... 597s Setting up x11-common (1:7.7+23ubuntu2) ... 599s Setting up node-html5shiv (3.7.3+dfsg-5) ... 599s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 599s Setting up libdeflate0:arm64 (1.19-1) ... 599s 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update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 630s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 630s Setting up r-cran-bitops (1.0-7-1) ... 630s Setting up r-cran-bit64 (4.0.5-1) ... 630s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 630s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 630s Setting up r-cran-deldir (2.0-4-1) ... 630s Setting up r-cran-askpass (1.2.0-1) ... 630s Setting up r-cran-fastmap (1.1.1-1) ... 630s Setting up r-cran-png (0.1-8-1) ... 630s Setting up r-bioc-biobase (2.62.0-1) ... 630s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 630s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 630s Setting up r-cran-utf8 (1.2.4-1) ... 630s Setting up r-cran-stringi (1.8.3-1) ... 630s Setting up texlive-latex-base (2023.20240207-1) ... 630s Setting up r-cran-hwriter (1.3.2.1-1) ... 630s Setting up r-cran-cpp11 (0.4.7-1) ... 630s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 630s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 630s Setting up r-cran-runit (0.4.32-3) ... 630s Setting up r-cran-futile.logger (1.4.3-4build1) ... 630s Setting up r-cran-later (1.3.2+dfsg-1) ... 630s Setting up r-cran-matrix (1.6-5-1) ... 630s Setting up r-cran-tinytex (0.49-1) ... 630s Setting up r-cran-knitr (1.45+dfsg-1) ... 630s Setting up g++ (4:13.2.0-7ubuntu1) ... 630s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 630s Setting up r-cran-cachem (1.0.8-1) ... 630s Setting up build-essential (12.10ubuntu1) ... 630s Setting up r-bioc-iranges (2.36.0-1) ... 631s Setting up r-cran-rjson (0.2.21-1) ... 631s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 631s Setting up r-cran-restfulr (0.0.15-1) ... 631s Setting up r-cran-vctrs (0.6.5-1) ... 631s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 631s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 631s Setting up r-cran-ellipsis (0.3.2-2) ... 631s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 631s Setting up r-base-dev (4.3.2-1build1) ... 631s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 631s Setting up r-cran-stringr (1.5.1-1) ... 631s Setting up r-bioc-biocparallel (1.36.0-1) ... 631s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 631s Setting up r-cran-xml2 (1.3.6-1) ... 631s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 631s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 631s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 631s Setting up texlive-bibtex-extra (2023.20240207-1) ... 631s Setting up r-cran-interp (1.1-6-1) ... 631s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 631s Setting up r-cran-httr (1.4.7+dfsg-1) ... 631s Setting up r-cran-hms (1.1.3-1) ... 631s Setting up r-cran-memoise (2.0.1-1) ... 631s Setting up r-cran-promises (1.2.1+dfsg-1) ... 631s Setting up r-cran-purrr (1.0.2-1) ... 631s Setting up r-cran-blob (1.2.4-1) ... 631s Setting up r-cran-htmltools (0.5.7-1) ... 631s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 631s Setting up r-bioc-xvector (0.42.0-1) ... 631s Setting up r-cran-sass (0.4.8+dfsg-1) ... 631s Setting up r-cran-dplyr (1.1.4-1) ... 631s Setting up r-cran-rsqlite (2.3.4-1) ... 631s Setting up r-cran-progress (1.2.3-1) ... 631s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 631s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 631s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 631s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 631s Setting up r-cran-fontawesome (0.5.2-1) ... 631s Setting up r-cran-latticeextra (0.6-30-1) ... 631s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 631s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 631s Setting up r-cran-tidyr (1.3.1-1) ... 631s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 631s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 631s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 631s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 631s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 631s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 631s Setting up r-bioc-annotationdbi (1.64.1-1) ... 631s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 631s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 631s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 631s Setting up r-bioc-genomicalignments (1.38.2-1) ... 631s Setting up r-cran-bookdown (0.37+dfsg-1) ... 631s Setting up r-bioc-rtracklayer (1.62.0-1) ... 631s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 631s Setting up r-bioc-shortread (1.60.0-2) ... 631s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 631s Setting up autopkgtest-satdep (0) ... 631s Processing triggers for man-db (2.12.0-3) ... 635s Processing triggers for install-info (7.1-3) ... 636s Processing triggers for libc-bin (2.39-0ubuntu2) ... 636s Processing triggers for tex-common (6.18) ... 638s Running updmap-sys. This may take some time... done. 638s Running mktexlsr /var/lib/texmf ... done. 639s Building format(s) --all. 794s This may take some time... done. 850s (Reading database ... 126008 files and directories currently installed.) 850s Removing autopkgtest-satdep (0) ... 852s autopkgtest [14:01:59]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 852s autopkgtest [14:01:59]: test pkg-r-autopkgtest: [----------------------- 852s Test: Try to load the R library ShortRead 853s 853s R version 4.3.2 (2023-10-31) -- "Eye Holes" 853s Copyright (C) 2023 The R Foundation for Statistical Computing 853s Platform: aarch64-unknown-linux-gnu (64-bit) 853s 853s R is free software and comes with ABSOLUTELY NO WARRANTY. 853s You are welcome to redistribute it under certain conditions. 853s Type 'license()' or 'licence()' for distribution details. 853s 853s R is a collaborative project with many contributors. 853s Type 'contributors()' for more information and 853s 'citation()' on how to cite R or R packages in publications. 853s 853s Type 'demo()' for some demos, 'help()' for on-line help, or 853s 'help.start()' for an HTML browser interface to help. 853s Type 'q()' to quit R. 853s 854s > library('ShortRead') 854s Loading required package: BiocGenerics 854s 854s Attaching package: ‘BiocGenerics’ 854s 854s The following objects are masked from ‘package:stats’: 854s 854s IQR, mad, sd, var, xtabs 854s 854s The following objects are masked from ‘package:base’: 854s 854s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 854s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 854s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 854s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 854s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 854s table, tapply, union, unique, unsplit, which.max, which.min 854s 854s Loading required package: BiocParallel 855s Loading required package: Biostrings 855s Loading required package: S4Vectors 855s Loading required package: stats4 858s 858s Attaching package: ‘S4Vectors’ 858s 858s The following object is masked from ‘package:utils’: 858s 858s findMatches 858s 858s The following objects are masked from ‘package:base’: 858s 858s expand.grid, I, unname 858s 858s Loading required package: IRanges 862s Loading required package: XVector 863s Loading required package: GenomeInfoDb 866s 866s Attaching package: ‘Biostrings’ 866s 866s The following object is masked from ‘package:base’: 866s 866s strsplit 866s 866s Loading required package: Rsamtools 866s Loading required package: GenomicRanges 870s Loading required package: GenomicAlignments 870s Loading required package: SummarizedExperiment 870s Loading required package: MatrixGenerics 870s Loading required package: matrixStats 870s 870s Attaching package: ‘MatrixGenerics’ 870s 870s The following objects are masked from ‘package:matrixStats’: 870s 870s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 870s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 870s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 870s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 870s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 870s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 870s colWeightedMeans, colWeightedMedians, colWeightedSds, 870s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 870s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 870s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 870s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 870s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 870s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 870s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 870s rowWeightedSds, rowWeightedVars 870s 870s Loading required package: Biobase 871s Welcome to Bioconductor 871s 871s Vignettes contain introductory material; view with 871s 'browseVignettes()'. To cite Bioconductor, see 871s 'citation("Biobase")', and for packages 'citation("pkgname")'. 871s 871s 871s Attaching package: ‘Biobase’ 871s 871s The following object is masked from ‘package:MatrixGenerics’: 871s 871s rowMedians 871s 871s The following objects are masked from ‘package:matrixStats’: 871s 871s anyMissing, rowMedians 871s 898s Warning message: 898s package ‘Rsamtools’ was built under R version 4.3.3 898s > 898s > 898s Other tests are currently unsupported! 898s They will be progressively added. 899s autopkgtest [14:02:46]: test pkg-r-autopkgtest: -----------------------] 900s pkg-r-autopkgtest PASS 900s autopkgtest [14:02:47]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 901s autopkgtest [14:02:48]: @@@@@@@@@@@@@@@@@@@@ summary 901s pkg-r-autopkgtest PASS 919s Creating nova instance adt-noble-arm64-r-bioc-shortread-20240316-134747-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...