0s autopkgtest [13:37:32]: starting date and time: 2024-03-16 13:37:32+0000 0s autopkgtest [13:37:32]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:37:32]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8fey6mc_/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rhtslib,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-shortread --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rhtslib/2.4.1+dfsg-3build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-4.secgroup --name adt-noble-arm64-r-bioc-shortread-20240316-133732-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 60s autopkgtest [13:38:32]: testbed dpkg architecture: arm64 60s autopkgtest [13:38:32]: testbed apt version: 2.7.12 60s autopkgtest [13:38:32]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 61s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 61s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 61s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 61s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 61s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 61s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 61s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 61s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 61s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 62s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 62s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 62s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 63s Fetched 9092 kB in 2s (5598 kB/s) 63s Reading package lists... 66s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 68s The following packages will be REMOVED: 68s libssl3 68s The following NEW packages will be installed: 68s libssl3t64 68s The following packages have been kept back: 68s curl 68s The following packages will be upgraded: 68s openssl ubuntu-minimal ubuntu-standard 68s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 68s Need to get 2775 kB of archives. 68s After this operation, 72.7 kB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 68s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 68s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 68s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 69s Fetched 2775 kB in 1s (3753 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 69s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 69s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 69s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 69s wget depends on libssl3 (>= 3.0.0). 69s u-boot-tools depends on libssl3 (>= 3.0.0). 69s tnftp depends on libssl3 (>= 3.0.0). 69s tcpdump depends on libssl3 (>= 3.0.0). 69s systemd-resolved depends on libssl3 (>= 3.0.0). 69s systemd depends on libssl3 (>= 3.0.0). 69s sudo depends on libssl3 (>= 3.0.0). 69s sbsigntool depends on libssl3 (>= 3.0.0). 69s rsync depends on libssl3 (>= 3.0.0). 69s python3-cryptography depends on libssl3 (>= 3.0.0). 69s openssh-server depends on libssl3 (>= 3.0.10). 69s openssh-client depends on libssl3 (>= 3.0.10). 69s mtd-utils depends on libssl3 (>= 3.0.0). 69s mokutil depends on libssl3 (>= 3.0.0). 69s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 69s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 69s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 69s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 69s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 69s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 69s libnvme1 depends on libssl3 (>= 3.0.0). 69s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 69s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 69s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 69s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 69s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 69s kmod depends on libssl3 (>= 3.0.0). 69s dhcpcd-base depends on libssl3 (>= 3.0.0). 69s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 69s 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 70s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 70s Selecting previously unselected package libssl3t64:arm64. 70s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 70s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 70s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 70s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 70s Unpacking ubuntu-minimal (1.536) over (1.535) ... 70s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 70s Unpacking ubuntu-standard (1.536) over (1.535) ... 70s Setting up ubuntu-minimal (1.536) ... 70s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 70s Setting up ubuntu-standard (1.536) ... 70s Setting up openssl (3.0.13-0ubuntu1) ... 70s Processing triggers for man-db (2.12.0-3) ... 71s Processing triggers for libc-bin (2.39-0ubuntu2) ... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 73s sh: Attempting to set up Debian/Ubuntu apt sources automatically 73s sh: Distribution appears to be Ubuntu 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s eatmydata is already the newest version (131-1). 75s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 75s Reading package lists... 75s Building dependency tree... 75s Reading state information... 76s dbus is already the newest version (1.14.10-4ubuntu1). 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s rng-tools-debian is already the newest version (2.4). 76s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s The following packages will be REMOVED: 77s cloud-init* python3-configobj* python3-debconf* 78s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 78s After this operation, 3252 kB disk space will be freed. 78s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 78s Removing cloud-init (24.1.1-0ubuntu1) ... 78s Removing python3-configobj (5.0.8-3) ... 78s Removing python3-debconf (1.5.86) ... 78s Processing triggers for man-db (2.12.0-3) ... 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 79s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 79s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 79s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 79s invoke-rc.d: policy-rc.d denied execution of try-restart. 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s linux-generic is already the newest version (6.8.0-11.11+1). 80s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 81s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 81s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 81s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 82s Reading package lists... 83s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s Calculating upgrade... 84s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 85s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 86s autopkgtest [13:38:58]: rebooting testbed after setup commands that affected boot 310s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 317s autopkgtest [13:42:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 320s autopkgtest [13:42:52]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-shortread 323s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (dsc) [2387 B] 323s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (tar) [5223 kB] 323s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-shortread 1.60.0-2 (diff) [5876 B] 323s gpgv: Signature made Mon Dec 18 09:06:56 2023 UTC 323s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 323s gpgv: issuer "tille@debian.org" 323s gpgv: Can't check signature: No public key 323s dpkg-source: warning: cannot verify inline signature for ./r-bioc-shortread_1.60.0-2.dsc: no acceptable signature found 323s autopkgtest [13:42:55]: testing package r-bioc-shortread version 1.60.0-2 324s autopkgtest [13:42:56]: build not needed 325s autopkgtest [13:42:57]: test pkg-r-autopkgtest: preparing testbed 327s Reading package lists... 327s Building dependency tree... 327s Reading state information... 327s Starting pkgProblemResolver with broken count: 0 327s Starting 2 pkgProblemResolver with broken count: 0 327s Done 328s The following additional packages will be installed: 328s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 328s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 328s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 328s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 328s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 328s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 328s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 328s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 328s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 328s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 328s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 328s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 328s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 328s libjs-highlight.js libjs-jquery libjs-jquery-datatables 328s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 328s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 328s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 328s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 328s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 328s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 328s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 328s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 328s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 328s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 328s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 328s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 328s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 328s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 328s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 328s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 328s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 328s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 328s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 328s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 328s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 328s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 328s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 328s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 328s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 328s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 328s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 328s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 328s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 328s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 328s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 328s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 328s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 328s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 328s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 328s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 328s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 328s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 328s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 328s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 328s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 328s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 328s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 328s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 328s Suggested packages: 328s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 328s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 328s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 328s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 328s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 328s libboost-context1.83-dev libboost-contract1.83-dev 328s libboost-coroutine1.83-dev libboost-date-time1.83-dev 328s libboost-exception1.83-dev libboost-fiber1.83-dev 328s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 328s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 328s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 328s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 328s libboost-numpy1.83-dev libboost-program-options1.83-dev 328s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 328s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 328s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 328s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 328s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 328s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 328s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 328s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 328s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 328s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 328s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 328s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 328s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 328s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 328s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 328s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 328s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 328s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 328s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 328s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 328s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 328s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 328s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 328s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 328s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 328s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 328s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 328s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 328s Recommended packages: 328s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 328s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 328s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 328s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 328s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 328s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 328s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 328s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 328s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 328s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 328s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 328s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 328s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 328s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 328s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 328s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 328s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 328s The following NEW packages will be installed: 328s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 328s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 328s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 328s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 328s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 328s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 328s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 328s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 328s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 328s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 328s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 328s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 328s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 328s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 328s libjs-highlight.js libjs-jquery libjs-jquery-datatables 328s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 328s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 328s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 328s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 328s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 328s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 328s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 328s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 328s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 328s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 328s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 328s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 328s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 328s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 328s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 328s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 328s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 328s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 328s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 328s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 328s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 328s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 328s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 328s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 328s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 328s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 328s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 328s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 328s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 328s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 328s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 328s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 328s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 328s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 328s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 328s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 328s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 328s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 328s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 328s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 328s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 328s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 328s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 328s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 328s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded. 328s Need to get 426 MB/426 MB of archives. 328s After this operation, 1353 MB of additional disk space will be used. 328s Get:1 /tmp/autopkgtest.qG72wq/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [760 B] 328s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 329s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 329s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 329s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 329s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 329s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 329s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 329s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 329s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 329s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 329s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 329s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 329s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 329s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 329s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 329s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 329s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 329s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 329s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 329s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 329s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 329s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 330s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 330s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 330s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 330s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 330s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 330s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 330s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 330s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 330s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 330s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 330s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 330s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 330s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 330s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 330s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 330s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 330s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 330s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 330s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 330s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 331s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 331s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 331s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 331s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 331s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 331s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 331s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 331s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 331s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 331s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 331s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 331s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 331s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 331s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 331s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 331s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 331s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 331s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 331s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 331s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 331s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 331s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 331s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 331s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 331s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 331s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 331s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 331s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 331s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 332s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 332s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 332s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 332s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 332s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 332s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 332s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 332s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 332s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 332s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 332s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 332s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 332s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 332s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 332s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 332s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 332s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 332s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 332s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 332s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 332s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 332s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 332s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 332s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 332s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 332s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 332s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 332s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 332s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 332s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 332s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 332s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 332s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 332s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 333s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 333s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 333s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 333s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 333s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 333s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 333s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 333s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 333s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 333s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 333s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 333s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 333s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 333s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 333s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 333s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 333s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 333s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 333s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 333s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 333s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 333s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 333s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 333s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 333s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 333s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 333s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 333s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 333s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 333s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 333s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 334s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 334s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 334s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 334s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 334s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 334s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 334s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 335s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 335s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 335s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 335s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 335s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 335s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 335s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 335s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 335s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 335s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 335s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 335s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 335s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 335s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 335s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 335s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 335s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 335s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 335s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 335s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 335s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 335s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 335s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 335s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 335s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 335s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 335s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 335s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 335s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 335s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 335s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 335s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 335s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 336s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 336s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 336s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 336s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 336s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 336s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 336s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 336s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 336s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 336s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 337s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 337s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 337s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 337s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 337s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 337s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 337s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 337s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 337s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 337s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 337s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 337s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 337s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 337s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 337s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 337s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 337s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 337s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 337s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 338s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 338s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 338s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 338s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 338s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 338s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 338s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 338s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 338s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 338s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 338s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 338s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 338s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 338s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 338s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 338s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 338s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 338s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 338s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 338s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 338s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 338s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 338s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 338s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 338s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 338s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 338s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 338s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 338s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 338s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 338s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 338s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 338s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 338s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 338s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 338s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 338s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 338s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 338s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 338s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 338s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 338s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 338s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 339s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 339s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 341s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 341s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 341s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 341s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 341s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 341s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 341s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 341s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 341s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 341s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 341s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 341s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 341s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 341s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 341s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 341s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 341s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 341s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 341s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 341s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 341s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 341s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 341s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 341s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 341s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 341s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 341s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 341s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 341s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 341s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 342s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 342s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 342s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 342s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 343s Preconfiguring packages ... 343s Fetched 426 MB in 13s (31.9 MB/s) 344s Selecting previously unselected package libc-dev-bin. 344s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 344s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 344s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 344s Selecting previously unselected package linux-libc-dev:arm64. 344s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 344s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 344s Selecting previously unselected package libcrypt-dev:arm64. 344s Preparing to unpack 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libcc1-0:arm64. 344s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 344s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 344s Selecting previously unselected package libgomp1:arm64. 345s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package libitm1:arm64. 345s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package libatomic1:arm64. 345s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package libasan8:arm64. 345s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 345s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 345s Selecting previously unselected package liblsan0:arm64. 345s 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unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 346s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 346s Selecting previously unselected package g++-13. 346s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 346s Unpacking g++-13 (13.2.0-17ubuntu2) ... 346s Selecting previously unselected package g++-aarch64-linux-gnu. 346s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 346s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 346s Selecting previously unselected package g++. 346s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 346s Unpacking g++ (4:13.2.0-7ubuntu1) ... 346s Selecting previously unselected package build-essential. 346s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 346s Unpacking build-essential (12.10ubuntu1) ... 346s Selecting previously unselected package dctrl-tools. 346s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 346s Unpacking dctrl-tools (2.24-3build2) ... 346s Selecting previously unselected package fonts-dejavu-mono. 346s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 346s Unpacking fonts-dejavu-mono (2.37-8) ... 346s Selecting previously unselected package fonts-dejavu-core. 346s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 346s Unpacking fonts-dejavu-core (2.37-8) ... 346s Selecting previously unselected package fontconfig-config. 346s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 346s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package libfontconfig1:arm64. 346s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 346s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 346s Selecting previously unselected package fontconfig. 346s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 346s Unpacking fontconfig (2.15.0-1ubuntu1) ... 346s 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(14-20240303-1ubuntu1) ... 347s Selecting previously unselected package libgfortran-13-dev:arm64. 347s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 347s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 347s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 347s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package gfortran-13. 347s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 347s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 347s Selecting previously unselected package gfortran-aarch64-linux-gnu. 347s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 347s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package gfortran. 347s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 347s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 347s Selecting previously unselected package icu-devtools. 347s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 347s Unpacking icu-devtools (74.2-1ubuntu1) ... 347s Selecting previously unselected package javascript-common. 347s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 347s Unpacking javascript-common (11+nmu1) ... 347s Selecting previously unselected package libio-string-perl. 347s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 347s Unpacking libio-string-perl (1.08-4) ... 347s Selecting previously unselected package liblatex-tounicode-perl. 347s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 347s Unpacking liblatex-tounicode-perl (0.54-2) ... 347s Selecting previously unselected package libbibtex-parser-perl. 347s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 347s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 347s Selecting previously unselected package libblas3:arm64. 347s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 347s Unpacking libblas3:arm64 (3.12.0-3) ... 347s Selecting previously unselected package libblas-dev:arm64. 347s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 347s Unpacking libblas-dev:arm64 (3.12.0-3) ... 347s Selecting previously unselected package libboost1.83-dev:arm64. 347s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 347s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 349s Selecting previously unselected package libboost-dev:arm64. 349s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 349s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 349s Selecting previously unselected package libbz2-dev:arm64. 349s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 349s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 349s Selecting previously unselected package libpixman-1-0:arm64. 349s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 349s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 349s Selecting previously unselected package libxcb-render0:arm64. 349s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 349s Unpacking libxcb-render0:arm64 (1.15-1) ... 349s Selecting previously unselected package libxcb-shm0:arm64. 349s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 349s Unpacking libxcb-shm0:arm64 (1.15-1) ... 349s Selecting previously unselected package libxrender1:arm64. 349s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 349s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 349s Selecting previously unselected package libcairo2:arm64. 349s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 349s Unpacking libcairo2:arm64 (1.18.0-1) ... 349s Selecting previously unselected package libdatrie1:arm64. 349s Preparing to unpack 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... 350s Selecting previously unselected package libicu-dev:arm64. 350s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 350s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 350s Selecting previously unselected package libjpeg-turbo8:arm64. 350s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 350s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 350s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 350s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 350s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 350s Selecting previously unselected package libjpeg8:arm64. 350s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 350s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 350s Selecting previously unselected package libjpeg8-dev:arm64. 350s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 350s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 350s Selecting previously unselected package libjpeg-dev:arm64. 350s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 350s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 350s Selecting previously unselected package libjs-bootstrap. 350s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 350s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 350s Selecting previously unselected package libjs-popper.js. 350s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 350s Unpacking libjs-popper.js (1.16.1+ds-6) ... 350s Selecting previously unselected package libjs-bootstrap4. 350s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 350s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 350s Selecting previously unselected package libjs-d3. 351s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 351s Unpacking libjs-d3 (3.5.17-4) ... 351s Selecting previously unselected package libjs-es5-shim. 351s Preparing to unpack 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... 352s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 352s Selecting previously unselected package libncurses-dev:arm64. 352s Preparing to unpack .../096-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 352s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 352s Selecting previously unselected package libthai-data. 352s Preparing to unpack .../097-libthai-data_0.1.29-2_all.deb ... 352s Unpacking libthai-data (0.1.29-2) ... 352s Selecting previously unselected package libthai0:arm64. 352s Preparing to unpack .../098-libthai0_0.1.29-2_arm64.deb ... 352s Unpacking libthai0:arm64 (0.1.29-2) ... 352s Selecting previously unselected package libpango-1.0-0:arm64. 352s Preparing to unpack .../099-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 352s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 352s Selecting previously unselected package libpangoft2-1.0-0:arm64. 352s Preparing to unpack .../100-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 352s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 352s Selecting previously unselected package libpangocairo-1.0-0:arm64. 352s Preparing to unpack .../101-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 352s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 352s Selecting previously unselected package libpaper1:arm64. 352s Preparing to unpack .../102-libpaper1_1.1.29_arm64.deb ... 352s Unpacking libpaper1:arm64 (1.1.29) ... 352s Selecting previously unselected package libpaper-utils. 352s Preparing to unpack .../103-libpaper-utils_1.1.29_arm64.deb ... 352s Unpacking libpaper-utils (1.1.29) ... 352s Selecting previously unselected package libpcre2-16-0:arm64. 352s Preparing to unpack .../104-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 352s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 352s Selecting previously unselected package libpcre2-32-0:arm64. 352s Preparing to unpack .../105-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 352s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 352s Selecting previously unselected package libpcre2-posix3:arm64. 352s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 352s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 352s Selecting previously unselected package libpcre2-dev:arm64. 352s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 352s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 352s Selecting previously unselected package libpkgconf3:arm64. 352s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 352s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 352s Selecting previously unselected package zlib1g-dev:arm64. 352s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 352s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 352s Selecting previously unselected package libpng-dev:arm64. 352s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 352s Unpacking libpng-dev:arm64 (1.6.43-1) ... 352s Selecting previously unselected package libpotrace0:arm64. 352s Preparing to unpack .../111-libpotrace0_1.16-2_arm64.deb ... 352s Unpacking libpotrace0:arm64 (1.16-2) ... 352s Selecting previously unselected package libptexenc1:arm64. 352s Preparing to unpack .../112-libptexenc1_2023.20230311.66589-9_arm64.deb ... 352s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 352s Selecting previously unselected package libreadline-dev:arm64. 352s Preparing to unpack .../113-libreadline-dev_8.2-3_arm64.deb ... 352s Unpacking libreadline-dev:arm64 (8.2-3) ... 352s Selecting previously unselected package libsharpyuv0:arm64. 352s Preparing to unpack .../114-libsharpyuv0_1.3.2-0.4_arm64.deb ... 352s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 352s Selecting previously unselected package libsm6:arm64. 352s Preparing to unpack .../115-libsm6_2%3a1.2.3-1build2_arm64.deb ... 352s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 352s Selecting previously unselected package libsynctex2:arm64. 352s Preparing to unpack .../116-libsynctex2_2023.20230311.66589-9_arm64.deb ... 352s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 352s Selecting previously unselected package libtcl8.6:arm64. 352s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 352s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 353s Selecting previously unselected package libteckit0:arm64. 353s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 353s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 353s Selecting previously unselected package libtexlua53-5:arm64. 353s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 353s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 353s Selecting previously unselected package libjbig0:arm64. 353s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 353s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 353s Selecting previously unselected package libwebp7:arm64. 353s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 353s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 353s Selecting previously unselected package libtiff6:arm64. 353s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 353s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 353s Selecting previously unselected package libxft2:arm64. 353s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 353s Unpacking libxft2:arm64 (2.3.6-1) ... 353s Selecting previously unselected package libxss1:arm64. 353s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 353s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 353s Selecting previously unselected package libtk8.6:arm64. 353s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 353s Unpacking libtk8.6:arm64 (8.6.13-2) ... 353s Selecting previously unselected package libxt6:arm64. 353s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 353s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 353s Selecting previously unselected package libxmu6:arm64. 353s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 353s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 353s Selecting previously unselected package libxpm4:arm64. 353s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 353s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 353s Selecting previously unselected package libxaw7:arm64. 353s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 353s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 353s Selecting previously unselected package libxi6:arm64. 353s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 353s Unpacking libxi6:arm64 (2:1.8.1-1) ... 353s Selecting previously unselected package libzzip-0-13:arm64. 353s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 353s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 353s Selecting previously unselected package zip. 353s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 353s Unpacking zip (3.0-13) ... 353s Selecting previously unselected package unzip. 353s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 353s Unpacking unzip (6.0-28ubuntu3) ... 353s Selecting previously unselected package xdg-utils. 353s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 353s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 353s Selecting previously unselected package r-base-core. 353s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 353s Unpacking r-base-core (4.3.2-1build1) ... 354s Selecting previously unselected package r-cran-littler. 354s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 354s Unpacking r-cran-littler (0.3.19-1) ... 354s Selecting previously unselected package littler. 354s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 354s Unpacking littler (0.3.19-1) ... 354s Selecting previously unselected package node-bootstrap-sass. 354s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 354s Unpacking node-bootstrap-sass (3.4.3-2) ... 354s Selecting previously unselected package node-html5shiv. 354s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 354s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 354s Selecting previously unselected package node-normalize.css. 354s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 354s Unpacking node-normalize.css (8.0.1-5) ... 354s Selecting previously unselected package pandoc-data. 354s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 354s Unpacking pandoc-data (3.1.3-1) ... 354s Selecting previously unselected package pandoc. 354s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 354s Unpacking pandoc (3.1.3+ds-2) ... 355s Selecting previously unselected package pkgconf-bin. 355s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 355s Unpacking pkgconf-bin (1.8.1-2) ... 355s Selecting previously unselected package pkgconf:arm64. 355s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 355s Unpacking pkgconf:arm64 (1.8.1-2) ... 355s Selecting previously unselected package pkg-config:arm64. 355s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 355s Unpacking pkg-config:arm64 (1.8.1-2) ... 355s Selecting previously unselected package liblzma-dev:arm64. 355s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 355s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 355s Selecting previously unselected package r-base-dev. 356s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 356s Unpacking r-base-dev (4.3.2-1build1) ... 356s Selecting previously unselected package pkg-r-autopkgtest. 356s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 356s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 356s Selecting previously unselected package r-bioc-biocgenerics. 356s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 356s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 356s Selecting previously unselected package r-bioc-biobase. 356s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 356s Unpacking r-bioc-biobase (2.62.0-1) ... 356s Selecting previously unselected package r-bioc-s4vectors. 356s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 356s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 356s Selecting previously unselected package r-bioc-iranges. 356s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 356s Unpacking r-bioc-iranges (2.36.0-1) ... 356s Selecting previously unselected package r-cran-dbi. 356s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 356s Unpacking r-cran-dbi (1.2.2-1) ... 356s Selecting previously unselected package r-cran-bit. 357s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 357s Unpacking r-cran-bit (4.0.5-1) ... 357s Selecting previously unselected package r-cran-bit64. 357s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 357s Unpacking r-cran-bit64 (4.0.5-1) ... 357s Selecting previously unselected package r-cran-rlang. 357s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 357s Unpacking r-cran-rlang (1.1.3-1) ... 357s Selecting previously unselected package r-cran-cli. 357s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 357s Unpacking r-cran-cli (3.6.2-1) ... 357s Selecting previously unselected package r-cran-glue. 357s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 357s Unpacking r-cran-glue (1.7.0-1) ... 357s Selecting previously unselected package r-cran-lifecycle. 357s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 357s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 357s Selecting previously unselected package r-cran-vctrs. 357s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 357s Unpacking r-cran-vctrs (0.6.5-1) ... 357s Selecting previously unselected package r-cran-blob. 357s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 357s Unpacking r-cran-blob (1.2.4-1) ... 357s Selecting previously unselected package r-cran-fastmap. 357s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 357s Unpacking r-cran-fastmap (1.1.1-1) ... 357s Selecting previously unselected package r-cran-cachem. 357s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 357s Unpacking r-cran-cachem (1.0.8-1) ... 357s Selecting previously unselected package r-cran-memoise. 357s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 357s Unpacking r-cran-memoise (2.0.1-1) ... 357s Selecting previously unselected package r-cran-pkgconfig. 358s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 358s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 358s Selecting previously unselected package r-cran-plogr. 358s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 358s Unpacking r-cran-plogr (0.2.0-3build1) ... 358s Selecting previously unselected package r-cran-cpp11. 358s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 358s Unpacking r-cran-cpp11 (0.4.7-1) ... 358s Selecting previously unselected package r-cran-rsqlite. 358s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 358s Unpacking r-cran-rsqlite (2.3.4-1) ... 358s Selecting previously unselected package r-cran-curl. 358s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 358s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 358s Selecting previously unselected package r-cran-jsonlite. 358s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 358s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 358s Selecting previously unselected package r-cran-mime. 358s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 358s Unpacking r-cran-mime (0.12-1) ... 358s Selecting previously unselected package r-cran-sys. 358s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 358s Unpacking r-cran-sys (3.4.2-1) ... 358s Selecting previously unselected package r-cran-askpass. 358s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 358s Unpacking r-cran-askpass (1.2.0-1) ... 358s Selecting previously unselected package r-cran-openssl. 358s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 358s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 358s Selecting previously unselected package r-cran-r6. 358s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 358s Unpacking r-cran-r6 (2.5.1-1) ... 358s Selecting previously unselected package r-cran-httr. 358s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 358s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 358s Selecting previously unselected package r-cran-png. 358s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 358s Unpacking r-cran-png (0.1-8-1) ... 358s Selecting previously unselected package r-bioc-zlibbioc. 358s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 358s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 358s Selecting previously unselected package r-bioc-xvector. 358s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 358s Unpacking r-bioc-xvector (0.42.0-1) ... 358s Selecting previously unselected package r-cran-bitops. 358s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 358s Unpacking r-cran-bitops (1.0-7-1) ... 358s Selecting previously unselected package r-cran-rcurl. 358s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 358s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 358s Selecting previously unselected package r-bioc-genomeinfodbdata. 358s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 358s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 358s Selecting previously unselected package r-bioc-genomeinfodb. 358s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 358s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 358s Selecting previously unselected package r-cran-crayon. 358s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 358s Unpacking r-cran-crayon (1.5.2-1) ... 358s Selecting previously unselected package r-bioc-biostrings. 358s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 358s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 359s Selecting previously unselected package r-bioc-keggrest. 359s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 359s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 359s Selecting previously unselected package r-bioc-annotationdbi. 359s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 359s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 359s Selecting previously unselected package r-cran-generics. 359s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 359s Unpacking r-cran-generics (0.1.3-1) ... 359s Selecting previously unselected package r-cran-magrittr. 359s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 359s Unpacking r-cran-magrittr (2.0.3-1) ... 359s Selecting previously unselected package r-cran-fansi. 359s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 359s Unpacking r-cran-fansi (1.0.5-1) ... 359s Selecting previously unselected package r-cran-utf8. 359s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 359s Unpacking r-cran-utf8 (1.2.4-1) ... 359s Selecting previously unselected package r-cran-pillar. 359s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 359s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 359s Selecting previously unselected package r-cran-tibble. 359s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 359s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 359s Selecting previously unselected package r-cran-withr. 359s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 359s Unpacking r-cran-withr (2.5.0-1) ... 359s Selecting previously unselected package r-cran-tidyselect. 359s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 359s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 359s Selecting previously unselected package r-cran-dplyr. 359s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 359s Unpacking r-cran-dplyr (1.1.4-1) ... 359s Selecting previously unselected package r-cran-purrr. 359s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 359s Unpacking r-cran-purrr (1.0.2-1) ... 359s Selecting previously unselected package r-cran-stringi. 359s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 359s Unpacking r-cran-stringi (1.8.3-1) ... 359s Selecting previously unselected package r-cran-stringr. 359s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 359s Unpacking r-cran-stringr (1.5.1-1) ... 359s Selecting previously unselected package r-cran-tidyr. 359s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 359s Unpacking r-cran-tidyr (1.3.1-1) ... 359s Selecting previously unselected package r-cran-dbplyr. 359s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 359s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 359s Selecting previously unselected package r-cran-filelock. 359s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 359s Unpacking r-cran-filelock (1.0.3-1) ... 359s Selecting previously unselected package r-bioc-biocfilecache. 359s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 359s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 359s Selecting previously unselected package r-bioc-biocio. 359s Preparing to unpack .../204-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 359s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 359s Selecting previously unselected package r-cran-formatr. 360s Preparing to unpack .../205-r-cran-formatr_1.14-1_all.deb ... 360s Unpacking r-cran-formatr (1.14-1) ... 360s Selecting previously unselected package r-cran-lambda.r. 360s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ... 360s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 360s Selecting previously unselected package r-cran-futile.options. 360s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ... 360s Unpacking r-cran-futile.options (1.0.1-3build1) ... 360s Selecting previously unselected package r-cran-futile.logger. 360s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ... 360s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 360s Selecting previously unselected package r-cran-snow. 360s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ... 360s Unpacking r-cran-snow (1:0.4.4-2) ... 360s Selecting previously unselected package r-cran-codetools. 360s Preparing to unpack .../210-r-cran-codetools_0.2-19-1_all.deb ... 360s Unpacking r-cran-codetools (0.2-19-1) ... 360s Selecting previously unselected package r-cran-bh. 360s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ... 360s Unpacking r-cran-bh (1.84.0-1) ... 360s Selecting previously unselected package r-bioc-biocparallel. 360s Preparing to unpack .../212-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 360s Unpacking r-bioc-biocparallel (1.36.0-1) ... 360s Selecting previously unselected package r-cran-base64enc. 360s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_arm64.deb ... 360s Unpacking r-cran-base64enc (0.1-3-3) ... 360s Selecting previously unselected package r-cran-digest. 360s Preparing to unpack .../214-r-cran-digest_0.6.34-1_arm64.deb ... 360s Unpacking r-cran-digest (0.6.34-1) ... 360s Selecting previously unselected package r-cran-ellipsis. 360s Preparing to unpack .../215-r-cran-ellipsis_0.3.2-2_arm64.deb ... 360s Unpacking r-cran-ellipsis (0.3.2-2) ... 360s Selecting previously unselected package r-cran-htmltools. 360s Preparing to unpack .../216-r-cran-htmltools_0.5.7-1_arm64.deb ... 360s Unpacking r-cran-htmltools (0.5.7-1) ... 360s Selecting previously unselected package r-cran-evaluate. 360s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ... 360s Unpacking r-cran-evaluate (0.23-1) ... 360s Selecting previously unselected package r-cran-xfun. 360s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 360s Unpacking r-cran-xfun (0.41+dfsg-1) ... 360s Selecting previously unselected package r-cran-highr. 360s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ... 360s Unpacking r-cran-highr (0.10+dfsg-1) ... 360s Selecting previously unselected package r-cran-yaml. 360s Preparing to unpack .../220-r-cran-yaml_2.3.8-1_arm64.deb ... 360s Unpacking r-cran-yaml (2.3.8-1) ... 360s Selecting previously unselected package libjs-mathjax. 360s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 360s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 361s Selecting previously unselected package r-cran-knitr. 361s Preparing to unpack .../222-r-cran-knitr_1.45+dfsg-1_all.deb ... 361s Unpacking r-cran-knitr (1.45+dfsg-1) ... 361s Selecting previously unselected package r-cran-jquerylib. 361s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 361s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 361s Selecting previously unselected package r-cran-fs. 361s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 361s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 361s Selecting previously unselected package r-cran-rappdirs. 361s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1_arm64.deb ... 361s Unpacking r-cran-rappdirs (0.3.3-1) ... 361s Selecting previously unselected package r-cran-sass. 361s Preparing to unpack .../226-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 361s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 361s Selecting previously unselected package r-cran-bslib. 361s Preparing to unpack .../227-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 361s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 361s Selecting previously unselected package r-cran-fontawesome. 361s Preparing to unpack .../228-r-cran-fontawesome_0.5.2-1_all.deb ... 361s Unpacking r-cran-fontawesome (0.5.2-1) ... 361s Selecting previously unselected package r-cran-tinytex. 362s Preparing to unpack .../229-r-cran-tinytex_0.49-1_all.deb ... 362s Unpacking r-cran-tinytex (0.49-1) ... 362s Selecting previously unselected package libjs-modernizr. 362s Preparing to unpack .../230-libjs-modernizr_2.6.2+ds1-5_all.deb ... 362s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 362s Selecting previously unselected package r-cran-pkgkitten. 362s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 362s Unpacking r-cran-pkgkitten (0.2.3-1) ... 362s Selecting previously unselected package r-cran-rcpp. 362s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 362s Unpacking r-cran-rcpp (1.0.12-1) ... 362s Selecting previously unselected package r-cran-later. 362s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 362s Unpacking r-cran-later (1.3.2+dfsg-1) ... 362s Selecting previously unselected package r-cran-promises. 362s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 362s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 362s Selecting previously unselected package r-cran-httpuv. 362s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 362s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 362s Selecting previously unselected package r-cran-xtable. 362s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 362s Unpacking r-cran-xtable (1:1.8-4-2) ... 362s Selecting previously unselected package r-cran-sourcetools. 362s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 362s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 362s Selecting previously unselected package r-cran-commonmark. 362s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 362s Unpacking r-cran-commonmark (1.9.1-1) ... 362s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 362s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 362s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 362s Selecting previously unselected package r-cran-shiny. 362s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 362s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 362s Selecting previously unselected package r-cran-rmarkdown. 362s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 362s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 362s Selecting previously unselected package r-cran-bookdown. 362s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 362s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 362s Selecting previously unselected package r-cran-biocmanager. 362s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 362s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 362s Selecting previously unselected package tex-common. 362s Preparing to unpack .../244-tex-common_6.18_all.deb ... 362s Unpacking tex-common (6.18) ... 362s Selecting previously unselected package t1utils. 362s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 362s Unpacking t1utils (1.41-4build2) ... 362s Selecting previously unselected package texlive-binaries. 363s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 363s Unpacking texlive-binaries (2023.20230311.66589-9) ... 363s Selecting previously unselected package texlive-base. 363s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 363s Unpacking texlive-base (2023.20240207-1) ... 364s Selecting previously unselected package texlive-latex-base. 364s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 364s Unpacking texlive-latex-base (2023.20240207-1) ... 364s Selecting previously unselected package texlive-bibtex-extra. 364s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 364s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 367s Selecting previously unselected package r-bioc-biocstyle. 367s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 367s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 367s Selecting previously unselected package r-cran-xml. 367s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 367s Unpacking r-cran-xml (3.99-0.16.1-1) ... 367s Selecting previously unselected package r-cran-hms. 367s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 367s Unpacking r-cran-hms (1.1.3-1) ... 367s Selecting previously unselected package r-cran-prettyunits. 367s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 367s Unpacking r-cran-prettyunits (1.2.0-1) ... 367s Selecting previously unselected package r-cran-progress. 367s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 367s Unpacking r-cran-progress (1.2.3-1) ... 367s Selecting previously unselected package r-cran-xml2. 367s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 367s Unpacking r-cran-xml2 (1.3.6-1) ... 367s Selecting previously unselected package r-bioc-biomart. 367s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 367s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 367s Selecting previously unselected package r-cran-lattice. 367s Preparing to unpack .../257-r-cran-lattice_0.22-5-1_arm64.deb ... 367s Unpacking r-cran-lattice (0.22-5-1) ... 367s Selecting previously unselected package r-cran-matrix. 367s Preparing to unpack .../258-r-cran-matrix_1.6-5-1_arm64.deb ... 367s Unpacking r-cran-matrix (1.6-5-1) ... 367s Selecting previously unselected package r-cran-matrixstats. 367s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 367s Unpacking r-cran-matrixstats (1.2.0-1) ... 367s Selecting previously unselected package r-bioc-matrixgenerics. 367s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 367s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 367s Selecting previously unselected package r-cran-abind. 367s Preparing to unpack .../261-r-cran-abind_1.4-5-2_all.deb ... 367s Unpacking r-cran-abind (1.4-5-2) ... 367s Selecting previously unselected package r-bioc-s4arrays. 367s Preparing to unpack .../262-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 367s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 367s Selecting previously unselected package r-bioc-sparsearray. 367s Preparing to unpack .../263-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 367s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 367s Selecting previously unselected package r-bioc-delayedarray. 367s Preparing to unpack .../264-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 367s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 367s Selecting previously unselected package r-bioc-genomicranges. 367s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 367s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 368s Selecting previously unselected package r-bioc-summarizedexperiment. 368s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 368s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 368s Selecting previously unselected package r-bioc-rhtslib. 368s Preparing to unpack .../267-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 368s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 368s Selecting previously unselected package r-bioc-rsamtools. 368s Preparing to unpack .../268-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 368s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 368s Selecting previously unselected package r-bioc-genomicalignments. 368s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 368s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 368s Selecting previously unselected package r-cran-rjson. 368s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 368s Unpacking r-cran-rjson (0.2.21-1) ... 368s Selecting previously unselected package r-cran-restfulr. 368s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 368s Unpacking r-cran-restfulr (0.0.15-1) ... 368s Selecting previously unselected package r-bioc-rtracklayer. 368s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 368s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 368s Selecting previously unselected package r-bioc-genomicfeatures. 368s Preparing to unpack .../273-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 368s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 368s Selecting previously unselected package r-cran-hwriter. 368s Preparing to unpack .../274-r-cran-hwriter_1.3.2.1-1_all.deb ... 368s Unpacking r-cran-hwriter (1.3.2.1-1) ... 368s Selecting previously unselected package r-cran-jpeg. 368s Preparing to unpack .../275-r-cran-jpeg_0.1-10-1_arm64.deb ... 368s Unpacking r-cran-jpeg (0.1-10-1) ... 368s Selecting previously unselected package r-cran-rcolorbrewer. 368s Preparing to unpack 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(0.6-30-1) ... 369s Selecting previously unselected package r-bioc-shortread. 369s Preparing to unpack .../282-r-bioc-shortread_1.60.0-2_arm64.deb ... 369s Unpacking r-bioc-shortread (1.60.0-2) ... 369s Selecting previously unselected package r-cran-runit. 369s Preparing to unpack .../283-r-cran-runit_0.4.32-3_all.deb ... 369s Unpacking r-cran-runit (0.4.32-3) ... 369s Selecting previously unselected package autopkgtest-satdep. 369s Preparing to unpack .../284-1-autopkgtest-satdep.deb ... 369s Unpacking autopkgtest-satdep (0) ... 369s Setting up libjs-json (0~20221030+~1.0.8-1) ... 369s Setting up javascript-common (11+nmu1) ... 369s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 369s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 369s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 369s Setting up libpaper1:arm64 (1.1.29) ... 369s 369s Creating config file /etc/papersize with new version 369s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 369s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) 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up r-cran-snow (1:0.4.4-2) ... 375s Setting up r-cran-glue (1.7.0-1) ... 375s Setting up r-cran-bit (4.0.5-1) ... 375s Setting up r-cran-xtable (1:1.8-4-2) ... 375s Setting up r-cran-cli (3.6.2-1) ... 375s Setting up gfortran (4:13.2.0-7ubuntu1) ... 375s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 375s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 375s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 375s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 375s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 375s Setting up r-cran-bitops (1.0-7-1) ... 375s Setting up r-cran-bit64 (4.0.5-1) ... 375s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 375s Setting up 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(1.6.14+dfsg-1) ... 375s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 375s Setting up r-cran-fontawesome (0.5.2-1) ... 375s Setting up r-cran-latticeextra (0.6-30-1) ... 375s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 375s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 375s Setting up r-cran-tidyr (1.3.1-1) ... 375s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 375s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 375s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 375s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 375s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 375s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 375s Setting up r-bioc-annotationdbi (1.64.1-1) ... 375s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 375s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 375s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 375s Setting up r-bioc-genomicalignments (1.38.2-1) ... 375s Setting up r-cran-bookdown (0.37+dfsg-1) ... 375s Setting up r-bioc-rtracklayer (1.62.0-1) ... 375s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 375s Setting up r-bioc-shortread (1.60.0-2) ... 375s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 375s Setting up autopkgtest-satdep (0) ... 375s Processing triggers for man-db (2.12.0-3) ... 376s Processing triggers for install-info (7.1-3) ... 376s Processing triggers for libc-bin (2.39-0ubuntu2) ... 377s Processing triggers for tex-common (6.18) ... 377s Running updmap-sys. This may take some time... done. 377s Running mktexlsr /var/lib/texmf ... done. 377s Building format(s) --all. 414s This may take some time... done. 425s (Reading database ... 124470 files and directories currently installed.) 425s Removing autopkgtest-satdep (0) ... 426s autopkgtest [13:44:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 426s autopkgtest [13:44:38]: test pkg-r-autopkgtest: [----------------------- 426s Test: Try to load the R library ShortRead 427s 427s R version 4.3.2 (2023-10-31) -- "Eye Holes" 427s Copyright (C) 2023 The R Foundation for Statistical Computing 427s Platform: aarch64-unknown-linux-gnu (64-bit) 427s 427s R is free software and comes with ABSOLUTELY NO WARRANTY. 427s You are welcome to redistribute it under certain conditions. 427s Type 'license()' or 'licence()' for distribution details. 427s 427s R is a collaborative project with many contributors. 427s Type 'contributors()' for more information and 427s 'citation()' on how to cite R or R packages in publications. 427s 427s Type 'demo()' for some demos, 'help()' for on-line help, or 427s 'help.start()' for an HTML browser interface to help. 427s Type 'q()' to quit R. 427s 427s > library('ShortRead') 427s Loading required package: BiocGenerics 427s 427s Attaching package: ‘BiocGenerics’ 427s 427s The following objects are masked from ‘package:stats’: 427s 427s IQR, mad, sd, var, xtabs 427s 427s The following objects are masked from ‘package:base’: 427s 427s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 427s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 427s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 427s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 427s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 427s table, tapply, union, unique, unsplit, which.max, which.min 427s 427s Loading required package: BiocParallel 427s Loading required package: Biostrings 427s Loading required package: S4Vectors 427s Loading required package: stats4 428s 428s Attaching package: ‘S4Vectors’ 428s 428s The following object is masked from ‘package:utils’: 428s 428s findMatches 428s 428s The following objects are masked from ‘package:base’: 428s 428s expand.grid, I, unname 428s 428s Loading required package: IRanges 428s Loading required package: XVector 428s Loading required package: GenomeInfoDb 429s 429s Attaching package: ‘Biostrings’ 429s 429s The following object is masked from ‘package:base’: 429s 429s strsplit 429s 429s Loading required package: Rsamtools 429s Loading required package: GenomicRanges 430s Loading required package: GenomicAlignments 430s Loading required package: SummarizedExperiment 430s Loading required package: MatrixGenerics 430s Loading required package: matrixStats 430s 430s Attaching package: ‘MatrixGenerics’ 430s 430s The following objects are masked from ‘package:matrixStats’: 430s 430s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 430s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 430s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 430s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 430s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 430s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 430s colWeightedMeans, colWeightedMedians, colWeightedSds, 430s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 430s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 430s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 430s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 430s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 430s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 430s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 430s rowWeightedSds, rowWeightedVars 430s 430s Loading required package: Biobase 430s Welcome to Bioconductor 430s 430s Vignettes contain introductory material; view with 430s 'browseVignettes()'. To cite Bioconductor, see 430s 'citation("Biobase")', and for packages 'citation("pkgname")'. 430s 430s 430s Attaching package: ‘Biobase’ 430s 430s The following object is masked from ‘package:MatrixGenerics’: 430s 430s rowMedians 430s 430s The following objects are masked from ‘package:matrixStats’: 430s 430s anyMissing, rowMedians 430s 435s > 435s > 435s Other tests are currently unsupported! 435s They will be progressively added. 435s autopkgtest [13:44:47]: test pkg-r-autopkgtest: -----------------------] 436s pkg-r-autopkgtest PASS 436s autopkgtest [13:44:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 436s autopkgtest [13:44:48]: @@@@@@@@@@@@@@@@@@@@ summary 436s pkg-r-autopkgtest PASS 454s Creating nova instance adt-noble-arm64-r-bioc-shortread-20240316-133732-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...