0s autopkgtest [17:44:34]: starting date and time: 2024-03-16 17:44:34+0000 0s autopkgtest [17:44:34]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:44:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cn5xfrwf/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-scuttle --timeout-short=300 --timeout-copy=20000 --timeout-test=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest-big --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-21.secgroup --name adt-noble-arm64-r-bioc-scuttle-20240316-174434-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 96s autopkgtest [17:46:10]: testbed dpkg architecture: arm64 97s autopkgtest [17:46:11]: testbed apt version: 2.7.12 97s autopkgtest [17:46:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 97s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 98s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 98s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 98s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 98s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 98s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 98s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 98s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 98s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 98s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 98s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 98s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 98s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 100s Fetched 9060 kB in 2s (5062 kB/s) 100s Reading package lists... 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s Calculating upgrade... 105s The following packages will be REMOVED: 105s libglib2.0-0 libssl3 105s The following NEW packages will be installed: 105s libglib2.0-0t64 libssl3t64 xdg-user-dirs 105s The following packages have been kept back: 105s curl 105s The following packages will be upgraded: 105s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 105s ubuntu-minimal ubuntu-standard 105s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 105s Need to get 4613 kB of archives. 105s After this operation, 211 kB of additional disk space will be used. 105s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 105s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 106s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 106s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 106s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 106s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 106s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 106s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 106s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 106s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 106s Fetched 4613 kB in 1s (6197 kB/s) 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 107s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 107s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 107s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 107s udisks2 depends on libglib2.0-0 (>= 2.77.0). 107s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 107s python3-gi depends on libglib2.0-0 (>= 2.77.0). 107s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 107s netplan.io depends on libglib2.0-0 (>= 2.70.0). 107s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 107s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 107s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 107s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 107s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 107s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 107s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 107s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 107s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 107s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 107s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 107s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 107s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 107s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 107s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 107s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 107s fwupd depends on libglib2.0-0 (>= 2.79.0). 107s bolt depends on libglib2.0-0 (>= 2.56.0). 107s 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 107s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 107s Selecting previously unselected package libglib2.0-0t64:arm64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 107s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 107s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 107s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 107s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 107s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 107s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 107s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 107s wget depends on libssl3 (>= 3.0.0). 107s u-boot-tools depends on libssl3 (>= 3.0.0). 107s tnftp depends on libssl3 (>= 3.0.0). 107s tcpdump depends on libssl3 (>= 3.0.0). 107s systemd-resolved depends on libssl3 (>= 3.0.0). 107s systemd depends on libssl3 (>= 3.0.0). 107s sudo depends on libssl3 (>= 3.0.0). 107s sbsigntool depends on libssl3 (>= 3.0.0). 107s rsync depends on libssl3 (>= 3.0.0). 107s python3-cryptography depends on libssl3 (>= 3.0.0). 107s openssh-server depends on libssl3 (>= 3.0.10). 107s openssh-client depends on libssl3 (>= 3.0.10). 107s mtd-utils depends on libssl3 (>= 3.0.0). 107s mokutil depends on libssl3 (>= 3.0.0). 107s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 107s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 107s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 107s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 107s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 107s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 107s libnvme1 depends on libssl3 (>= 3.0.0). 107s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 107s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 107s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 107s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 107s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 107s kmod depends on libssl3 (>= 3.0.0). 107s dhcpcd-base depends on libssl3 (>= 3.0.0). 107s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 107s 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 107s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 107s Selecting previously unselected package libssl3t64:arm64. 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 107s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 107s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 108s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 108s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 108s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 108s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 108s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 108s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 108s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 108s Unpacking ubuntu-minimal (1.536) over (1.535) ... 108s Selecting previously unselected package xdg-user-dirs. 108s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 108s Unpacking xdg-user-dirs (0.18-1) ... 108s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 108s Unpacking ubuntu-standard (1.536) over (1.535) ... 108s Setting up ubuntu-minimal (1.536) ... 108s Setting up xdg-user-dirs (0.18-1) ... 108s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 108s Setting up libtirpc-common (1.3.4+ds-1.1) ... 108s Setting up ubuntu-standard (1.536) ... 108s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 108s No schema files found: doing nothing. 108s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 108s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 108s Setting up openssl (3.0.13-0ubuntu1) ... 108s Setting up readline-common (8.2-3.1) ... 108s Processing triggers for man-db (2.12.0-3) ... 109s Processing triggers for install-info (7.1-3) ... 109s Processing triggers for libc-bin (2.39-0ubuntu2) ... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 112s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 112s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 114s Reading package lists... 114s Reading package lists... 115s Building dependency tree... 115s Reading state information... 115s Calculating upgrade... 116s The following packages have been kept back: 116s curl 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 121s autopkgtest [17:46:35]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 122s autopkgtest [17:46:36]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scuttle 124s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scuttle 1.12.0+dfsg-1 (dsc) [2321 B] 124s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scuttle 1.12.0+dfsg-1 (tar) [88.8 kB] 124s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scuttle 1.12.0+dfsg-1 (diff) [3636 B] 124s gpgv: Signature made Thu Nov 30 17:19:41 2023 UTC 124s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 124s gpgv: issuer "tillea@rki.de" 124s gpgv: Can't check signature: No public key 124s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scuttle_1.12.0+dfsg-1.dsc: no acceptable signature found 124s autopkgtest [17:46:38]: testing package r-bioc-scuttle version 1.12.0+dfsg-1 125s autopkgtest [17:46:39]: build not needed 126s autopkgtest [17:46:40]: test pkg-r-autopkgtest: preparing testbed 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Starting pkgProblemResolver with broken count: 0 132s Starting 2 pkgProblemResolver with broken count: 0 132s Done 134s The following additional packages will be installed: 134s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 134s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 134s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 134s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 134s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 134s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 134s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 134s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 134s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 134s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 134s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 134s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 134s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 134s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 134s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 134s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 134s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 134s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 134s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 134s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 134s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 134s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 134s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 134s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 134s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 134s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 134s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 134s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 134s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 134s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 134s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 134s r-bioc-beachmat r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 134s r-bioc-biocio r-bioc-biocneighbors r-bioc-biocparallel r-bioc-biocsingular 134s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 134s r-bioc-bluster r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger 134s r-bioc-ensembldb r-bioc-experimenthub r-bioc-genomeinfodb 134s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 134s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 134s r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-metapod 134s r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 134s r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-scran 134s r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment 134s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 134s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 134s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 134s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 134s r-cran-callr r-cran-cli r-cran-cluster r-cran-codetools r-cran-commonmark 134s r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi 134s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 134s r-cran-dqrng r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi 134s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 134s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 134s r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 134s r-cran-httr r-cran-igraph r-cran-irlba r-cran-jquerylib r-cran-jsonlite 134s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 134s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-matrix 134s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 134s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 134s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 134s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 134s r-cran-rappdirs r-cran-rcpp r-cran-rcpphnsw r-cran-rcurl r-cran-rematch2 134s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 134s r-cran-rsqlite r-cran-rsvd r-cran-sass r-cran-shiny r-cran-sitmo r-cran-snow 134s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 134s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 134s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 134s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 134s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 134s x11-common xdg-utils zip zlib1g-dev 134s Suggested packages: 134s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 134s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 134s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 134s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 134s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 134s libboost-context1.83-dev libboost-contract1.83-dev 134s libboost-coroutine1.83-dev libboost-date-time1.83-dev 134s libboost-exception1.83-dev libboost-fiber1.83-dev 134s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 134s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 134s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 134s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 134s libboost-numpy1.83-dev libboost-program-options1.83-dev 134s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 134s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 134s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 134s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 134s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 134s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 134s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 134s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 134s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 134s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 134s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 134s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 134s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph 134s r-bioc-variantannotation r-cran-rcmdcheck r-bioc-hdf5array r-bioc-all 134s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-fnn r-cran-rcppannoy 134s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 134s r-cran-batchtools r-cran-data.table r-bioc-residualmatrix r-cran-mockery 134s r-cran-webmockr r-bioc-bsgenome r-cran-dynamictreecut r-bioc-scater 134s r-cran-pheatmap r-cran-viridis r-cran-kohonen r-cran-apcluster 134s r-bioc-dirichletmultinomial r-cran-vegan r-cran-fastcluster 134s r-bioc-genefilter r-cran-lobstr r-cran-profmem r-cran-readr r-bioc-rhdf5 134s r-cran-seuratobject r-bioc-ggbio r-bioc-gviz r-cran-r.utils r-cran-markdown 134s r-bioc-dexseq r-cran-biasedurn r-cran-ellipse r-cran-gplots r-cran-mass 134s r-bioc-monocle r-cran-rtsne r-cran-bench r-cran-roxygen2 r-cran-ff 134s r-cran-covr r-cran-spelling r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 134s r-cran-getopt r-cran-interp r-cran-gam r-cran-formattable r-cran-ggplot2 134s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 134s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 134s r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 134s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 134s hintview texlive-latex-base-doc wp2latex 134s Recommended packages: 134s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 134s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-rstudioapi 134s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 134s r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery 134s r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-scales 134s r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh r-cran-broom 134s r-cran-rmysql r-cran-mvtnorm libpcg-cpp-dev r-cran-future w3m | www-browser 134s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-cairo r-cran-markdown 134s r-cran-ragg r-cran-jpeg r-cran-readr r-cran-ape r-bioc-graph r-cran-rgl 134s r-cran-vdiffr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 134s r-cran-reticulate r-cran-tikzdevice r-cran-svglite node-highlight.js 134s r-cran-lintr r-cran-tidyverse r-cran-r.devices r-cran-sodium 134s r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-pingr 134s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 134s r-cran-rvest r-cran-plyr r-cran-data.table r-cran-formattable r-cran-pkgdown 134s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 134s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 134s The following packages will be REMOVED: 134s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 134s The following NEW packages will be installed: 134s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 134s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 134s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 134s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 134s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 134s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 134s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 134s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 134s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 134s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 134s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 134s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 134s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 134s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 134s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 134s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 134s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 134s libjs-popper.js libjs-prettify libjs-sifter.js 134s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 134s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 134s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 134s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 134s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 134s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 134s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 134s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 134s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 134s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 134s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 134s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 134s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi 134s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-beachmat r-bioc-biobase 134s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors 134s r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion 134s r-bioc-biomart r-bioc-biostrings r-bioc-bluster r-bioc-delayedarray 134s r-bioc-delayedmatrixstats r-bioc-edger r-bioc-ensembldb r-bioc-experimenthub 134s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 134s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 134s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 134s r-bioc-metapod r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 134s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 134s r-bioc-scran r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment 134s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 134s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 134s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 134s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 134s r-cran-callr r-cran-cli r-cran-cluster r-cran-codetools r-cran-commonmark 134s r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi 134s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 134s r-cran-dqrng r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi 134s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 134s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 134s r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 134s r-cran-httr r-cran-igraph r-cran-irlba r-cran-jquerylib r-cran-jsonlite 134s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 134s r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr r-cran-matrix 134s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 134s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 134s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 134s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 134s r-cran-rappdirs r-cran-rcpp r-cran-rcpphnsw r-cran-rcurl r-cran-rematch2 134s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 134s r-cran-rsqlite r-cran-rsvd r-cran-sass r-cran-shiny r-cran-sitmo r-cran-snow 134s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 134s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 134s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml 134s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 134s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 134s x11-common xdg-utils zip zlib1g-dev 134s The following packages will be upgraded: 134s curl 134s 1 upgraded, 328 newly installed, 5 to remove and 0 not upgraded. 134s Need to get 445 MB/445 MB of archives. 134s After this operation, 1396 MB of additional disk space will be used. 134s Get:1 /tmp/autopkgtest.sjylaQ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 134s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 134s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 135s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 135s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 135s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 135s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 135s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 135s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 135s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 135s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 135s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 135s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 135s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 135s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 135s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 135s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 136s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 136s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 136s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 136s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 136s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 136s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 136s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 136s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 136s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 136s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 136s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 136s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 136s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 136s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 137s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 137s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 137s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 137s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 137s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 137s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 137s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 137s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 137s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 137s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 137s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 137s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 137s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 137s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 137s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 137s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 137s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 137s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 137s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 137s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 137s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 137s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 138s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 138s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 138s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 138s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 138s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 138s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 138s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 138s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 138s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 138s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 138s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 138s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 138s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 138s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 138s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 138s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 138s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 138s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 138s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 138s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 138s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 138s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 138s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 138s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 138s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 138s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 138s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 138s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 138s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 138s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 138s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 138s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 138s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 138s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 139s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 139s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 139s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 139s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 139s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 139s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 139s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 139s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 139s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 139s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 139s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 139s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 139s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 139s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 139s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 139s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 139s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 139s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 139s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 139s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 139s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 139s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 139s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 139s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 139s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 139s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 140s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 140s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 140s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 140s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 140s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 140s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 140s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 140s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 140s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 140s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 140s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 140s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 140s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 140s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 140s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 140s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 140s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 140s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 140s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 140s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 140s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 140s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 140s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 140s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 140s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 140s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 140s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 140s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 140s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 140s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 140s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 142s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 142s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 142s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 142s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 142s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 142s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 142s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 142s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 142s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 142s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 142s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 142s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 142s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 142s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 142s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 142s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 142s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 142s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 142s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 142s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 142s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 143s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 143s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 143s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 143s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 143s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 143s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 143s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 143s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 143s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 143s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 143s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 143s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 143s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 143s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 143s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 143s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 143s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 143s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 143s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 143s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 143s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 143s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 143s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 143s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 143s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 143s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 143s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 143s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 143s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 144s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 144s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 144s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 144s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 144s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 144s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 144s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 144s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 144s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 144s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 144s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 144s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 144s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 144s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 144s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 144s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 144s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 144s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 144s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 145s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 145s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 145s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 145s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 145s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 145s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 145s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 145s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 145s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 145s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 145s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 145s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 145s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 145s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 145s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 145s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 145s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 145s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 145s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 145s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 145s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 145s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 145s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 145s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 145s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 145s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 145s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 145s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 145s Get:242 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 145s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 145s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 145s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 145s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 145s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 145s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 145s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 145s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 145s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 145s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 145s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 145s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 145s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 145s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 145s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 145s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 145s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 145s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 146s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 146s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 146s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 146s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 146s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 146s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 146s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 146s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 146s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 146s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpphnsw arm64 0.5.0+ds-1 [168 kB] 146s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocneighbors arm64 1.20.2+ds-1 [588 kB] 146s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scaledmatrix all 1.10.0+dfsg-1 [320 kB] 146s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-irlba arm64 2.3.5.1-2 [293 kB] 146s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] 146s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocsingular arm64 1.18.0+ds-1 [350 kB] 146s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 146s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 146s Get:278 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 146s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 146s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 147s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 147s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 149s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 149s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 149s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 149s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 149s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 149s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 149s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 149s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 149s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-igraph arm64 1.6.0-1 [4329 kB] 149s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bluster arm64 1.12.0+dfsg-1 [535 kB] 149s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 149s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 149s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 149s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 149s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 149s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 149s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 149s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 149s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 149s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 149s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 149s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 149s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 150s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 150s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 150s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 150s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 150s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-metapod arm64 1.10.1+dfsg-1 [220 kB] 150s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 150s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scuttle arm64 1.12.0+dfsg-1 [423 kB] 150s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sitmo arm64 2.0.2-1 [129 kB] 150s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dqrng arm64 0.3.2+dfsg-1 [157 kB] 150s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scran arm64 1.30.2+dfsg-1 [984 kB] 150s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 150s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 150s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 150s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 150s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 150s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 150s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 150s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 150s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 150s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 150s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 150s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 150s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 150s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 153s Preconfiguring packages ... 153s Fetched 445 MB in 16s (27.1 MB/s) 153s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 153s wget depends on libpsl5 (>= 0.16.0). 153s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 153s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 153s 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 153s Removing libpsl5:arm64 (0.21.2-1build1) ... 153s Selecting previously unselected package libpsl5t64:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 153s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 153s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 153s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 153s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 154s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 154s Selecting previously unselected package libcurl4t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 154s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 154s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 154s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 154s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 154s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 154s Removing libpng16-16:arm64 (1.6.43-1) ... 154s Selecting previously unselected package libpng16-16t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 154s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 154s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 154s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 154s parted depends on libreadline8 (>= 6.0). 154s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 154s gpgsm depends on libreadline8 (>= 6.0). 154s gpgconf depends on libreadline8 (>= 6.0). 154s gpg depends on libreadline8 (>= 6.0). 154s gawk depends on libreadline8 (>= 6.0). 154s fdisk depends on libreadline8 (>= 6.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 154s Removing libreadline8:arm64 (8.2-3) ... 154s Selecting previously unselected package libreadline8t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 154s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 154s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 154s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 154s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 154s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 154s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 154s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 154s lsof depends on libtirpc3 (>= 1.0.2). 154s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 154s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 154s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 154s iproute2 depends on libtirpc3 (>= 1.0.2). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 154s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 154s Selecting previously unselected package libtirpc3t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 154s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 154s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 155s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 155s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 155s Selecting previously unselected package libc-dev-bin. 155s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 155s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 155s Selecting previously unselected package linux-libc-dev:arm64. 155s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 155s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 155s Selecting previously unselected package libcrypt-dev:arm64. 155s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 155s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 155s Selecting previously unselected package libtirpc-dev:arm64. 155s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 155s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 155s Selecting previously unselected package libnsl-dev:arm64. 155s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 155s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 155s Selecting previously unselected package rpcsvc-proto. 156s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 156s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 156s Selecting previously unselected package libc6-dev:arm64. 156s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 156s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 156s Selecting previously unselected package libisl23:arm64. 156s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 156s Unpacking libisl23:arm64 (0.26-3) ... 156s Selecting previously unselected package libmpc3:arm64. 156s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 156s Unpacking libmpc3:arm64 (1.3.1-1) ... 156s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 156s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 156s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 156s Selecting previously unselected package cpp-13. 156s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 156s Unpacking cpp-13 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Selecting previously unselected package libatomic1:arm64. 157s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libasan8:arm64. 158s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 158s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 158s Selecting previously unselected package liblsan0:arm64. 158s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 158s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 158s Selecting previously unselected package libtsan2:arm64. 158s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 158s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 158s Selecting previously unselected package libubsan1:arm64. 158s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 158s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 158s Selecting previously unselected package libhwasan0:arm64. 158s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 158s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 158s Selecting previously unselected package libgcc-13-dev:arm64. 158s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 158s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 158s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package gcc-13. 159s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package gcc-aarch64-linux-gnu. 159s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package gcc. 159s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 159s Unpacking gcc (4:13.2.0-7ubuntu1) ... 159s Selecting previously unselected package libstdc++-13-dev:arm64. 159s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-13-aarch64-linux-gnu. 160s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-13. 160s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 160s Unpacking g++-13 (13.2.0-17ubuntu2) ... 160s Selecting previously unselected package g++-aarch64-linux-gnu. 160s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package g++. 160s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 160s Unpacking g++ (4:13.2.0-7ubuntu1) ... 160s Selecting previously unselected package build-essential. 160s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 160s Unpacking build-essential (12.10ubuntu1) ... 160s Selecting previously unselected package dctrl-tools. 161s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 161s Unpacking dctrl-tools (2.24-3build2) ... 161s Selecting previously unselected package fonts-dejavu-mono. 161s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 161s Unpacking fonts-dejavu-mono (2.37-8) ... 161s Selecting previously unselected package fonts-dejavu-core. 161s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 161s Unpacking fonts-dejavu-core (2.37-8) ... 161s Selecting previously unselected package fontconfig-config. 161s Preparing to unpack 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fonts-lmodern. 162s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 162s Unpacking fonts-lmodern (2.005-1) ... 162s Selecting previously unselected package fonts-mathjax. 162s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 162s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 162s Selecting previously unselected package libgfortran5:arm64. 163s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 163s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 163s Selecting previously unselected package libgfortran-13-dev:arm64. 163s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 163s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gfortran-13. 164s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package gfortran-aarch64-linux-gnu. 164s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package gfortran. 164s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package icu-devtools. 164s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 164s Unpacking icu-devtools (74.2-1ubuntu1) ... 164s Selecting previously unselected package javascript-common. 164s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 164s Unpacking javascript-common (11+nmu1) ... 164s Selecting previously unselected package libio-string-perl. 164s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 164s Unpacking libio-string-perl (1.08-4) ... 164s Selecting previously unselected package liblatex-tounicode-perl. 164s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 164s Unpacking liblatex-tounicode-perl (0.54-2) ... 164s Selecting previously unselected package libbibtex-parser-perl. 164s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 164s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 164s Selecting previously unselected package libblas3:arm64. 164s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 164s Unpacking libblas3:arm64 (3.12.0-3) ... 164s Selecting previously unselected package libblas-dev:arm64. 164s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 164s Unpacking libblas-dev:arm64 (3.12.0-3) ... 164s Selecting previously unselected package libboost1.83-dev:arm64. 164s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 164s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 166s Selecting previously unselected package libboost-dev:arm64. 166s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 166s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 166s Selecting previously unselected package libbz2-dev:arm64. 166s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 166s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 166s Selecting previously unselected package libpixman-1-0:arm64. 166s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 166s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 166s Selecting previously unselected package libxcb-render0:arm64. 166s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 166s Unpacking libxcb-render0:arm64 (1.15-1) ... 166s Selecting previously unselected package libxcb-shm0:arm64. 166s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 166s Unpacking libxcb-shm0:arm64 (1.15-1) ... 166s Selecting previously unselected package libxrender1:arm64. 166s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 166s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 166s Selecting previously unselected package libcairo2:arm64. 166s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 166s Unpacking libcairo2:arm64 (1.18.0-1) ... 166s Selecting previously unselected package libdatrie1:arm64. 166s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 166s Unpacking libdatrie1:arm64 (0.2.13-3) ... 166s Selecting previously unselected package libdeflate0:arm64. 166s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 166s Unpacking libdeflate0:arm64 (1.19-1) ... 166s Selecting previously unselected package libgraphite2-3:arm64. 166s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 166s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 166s Selecting previously unselected package libharfbuzz0b:arm64. 166s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 166s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 166s Selecting previously unselected package x11-common. 166s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 166s Unpacking x11-common (1:7.7+23ubuntu2) ... 166s Selecting previously unselected package libice6:arm64. 166s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 166s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 166s Selecting previously unselected package libicu-dev:arm64. 167s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 167s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 167s Selecting previously unselected package libjpeg-turbo8:arm64. 167s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 167s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 167s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 167s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 167s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 167s Selecting previously unselected package libjpeg8:arm64. 167s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg8-dev:arm64. 167s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjpeg-dev:arm64. 167s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 167s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 167s Selecting previously unselected package libjs-bootstrap. 167s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 167s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 167s Selecting previously unselected package libjs-popper.js. 167s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 167s Unpacking libjs-popper.js (1.16.1+ds-6) ... 167s Selecting previously unselected package libjs-bootstrap4. 167s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 167s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 167s Selecting previously unselected package libjs-d3. 167s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 167s Unpacking libjs-d3 (3.5.17-4) ... 167s Selecting previously unselected package libjs-es5-shim. 167s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 167s Unpacking libjs-es5-shim (4.6.7-2) ... 167s Selecting previously unselected package libjs-highlight.js. 167s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 167s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 167s Selecting previously unselected package libjs-jquery. 167s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 167s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 167s Selecting previously unselected package libjs-jquery-datatables. 167s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 167s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 167s Selecting previously unselected package libjs-jquery-datatables-extensions. 168s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 168s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 168s Selecting previously unselected package libjs-sifter.js. 168s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 168s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 168s Selecting previously unselected package libjs-microplugin.js. 168s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 168s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 168s Selecting previously unselected package libjs-jquery-selectize.js. 168s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 168s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 168s Selecting previously unselected package libjs-jquery-ui. 168s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 168s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 168s Selecting previously unselected package libjs-json. 168s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 168s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 168s Selecting previously unselected package libjs-lunr. 168s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 168s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 168s Selecting previously unselected package libjs-prettify. 168s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 168s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 168s Selecting previously unselected package libkpathsea6:arm64. 168s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 168s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 168s Selecting previously unselected package liblapack3:arm64. 168s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 168s Unpacking liblapack3:arm64 (3.12.0-3) ... 168s Selecting previously unselected package liblapack-dev:arm64. 168s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 168s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 168s Selecting previously unselected package liblerc4:arm64. 168s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 168s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 168s Selecting previously unselected package liblua5.4-0:arm64. 168s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 168s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 168s Selecting previously unselected package libncurses-dev:arm64. 168s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 168s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 168s Selecting previously unselected package libthai-data. 169s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 169s Unpacking libthai-data (0.1.29-2) ... 169s Selecting previously unselected package libthai0:arm64. 169s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 169s Unpacking libthai0:arm64 (0.1.29-2) ... 169s Selecting previously unselected package libpango-1.0-0:arm64. 169s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangoft2-1.0-0:arm64. 169s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangocairo-1.0-0:arm64. 169s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpaper1:arm64. 169s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 169s Unpacking libpaper1:arm64 (1.1.29) ... 169s Selecting previously unselected package libpaper-utils. 169s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 169s Unpacking libpaper-utils (1.1.29) ... 169s Selecting previously unselected package libpcre2-16-0:arm64. 169s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-32-0:arm64. 169s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-posix3:arm64. 169s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-dev:arm64. 169s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpkgconf3:arm64. 169s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 169s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 169s Selecting previously unselected package zlib1g-dev:arm64. 169s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 169s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 169s Selecting previously unselected package libpng-dev:arm64. 169s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 169s Unpacking libpng-dev:arm64 (1.6.43-3) ... 169s Selecting previously unselected package libpotrace0:arm64. 169s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 169s Unpacking libpotrace0:arm64 (1.16-2) ... 169s Selecting previously unselected package libptexenc1:arm64. 169s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libreadline-dev:arm64. 169s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 169s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 169s Selecting previously unselected package libsharpyuv0:arm64. 169s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 169s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 169s Selecting previously unselected package libsm6:arm64. 169s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 169s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 169s Selecting previously unselected package libsynctex2:arm64. 169s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 169s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 169s Selecting previously unselected package libtcl8.6:arm64. 170s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 170s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 170s Selecting previously unselected package libteckit0:arm64. 170s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 170s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 170s Selecting previously unselected package libtexlua53-5:arm64. 170s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 170s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 170s Selecting previously unselected package libjbig0:arm64. 170s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 170s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 170s Selecting previously unselected package libwebp7:arm64. 170s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 170s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 170s Selecting previously unselected package libtiff6:arm64. 170s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 170s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 170s Selecting previously unselected package libxft2:arm64. 170s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 170s Unpacking libxft2:arm64 (2.3.6-1) ... 170s Selecting previously unselected package libxss1:arm64. 170s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 170s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 170s Selecting previously unselected package libtk8.6:arm64. 170s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 170s Unpacking libtk8.6:arm64 (8.6.13-2) ... 170s Selecting previously unselected package libxt6t64:arm64. 170s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 170s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 170s Selecting previously unselected package libxmu6:arm64. 170s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 170s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 170s Selecting previously unselected package libxpm4:arm64. 170s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 170s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 170s Selecting previously unselected package libxaw7:arm64. 170s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 170s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 170s Selecting previously unselected package libxi6:arm64. 170s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 170s Unpacking libxi6:arm64 (2:1.8.1-1) ... 170s Selecting previously unselected package libzzip-0-13:arm64. 170s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 170s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 170s Selecting previously unselected package zip. 170s Preparing to unpack .../134-zip_3.0-13_arm64.deb ... 170s Unpacking zip (3.0-13) ... 170s Selecting previously unselected package unzip. 170s Preparing to unpack .../135-unzip_6.0-28ubuntu3_arm64.deb ... 170s Unpacking unzip (6.0-28ubuntu3) ... 171s Selecting previously unselected package xdg-utils. 171s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 171s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 171s Selecting previously unselected package r-base-core. 171s Preparing to unpack .../137-r-base-core_4.3.3-2build1_arm64.deb ... 171s Unpacking r-base-core (4.3.3-2build1) ... 171s Selecting previously unselected package r-cran-littler. 171s Preparing to unpack .../138-r-cran-littler_0.3.19-1_arm64.deb ... 171s Unpacking r-cran-littler (0.3.19-1) ... 171s Selecting previously unselected package littler. 171s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 171s Unpacking littler (0.3.19-1) ... 171s Selecting previously unselected package node-bootstrap-sass. 171s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 171s Unpacking node-bootstrap-sass (3.4.3-2) ... 171s Selecting previously unselected package node-html5shiv. 171s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 171s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 172s Selecting previously unselected package node-normalize.css. 172s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 172s Unpacking node-normalize.css (8.0.1-5) ... 173s Selecting previously unselected package pandoc-data. 174s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 174s Unpacking pandoc-data (3.1.3-1) ... 174s Selecting previously unselected package pandoc. 175s Preparing to unpack .../144-pandoc_3.1.3+ds-2_arm64.deb ... 175s Unpacking pandoc (3.1.3+ds-2) ... 176s Selecting previously unselected package pkgconf-bin. 176s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_arm64.deb ... 176s Unpacking pkgconf-bin (1.8.1-2) ... 176s Selecting previously unselected package pkgconf:arm64. 176s Preparing to unpack .../146-pkgconf_1.8.1-2_arm64.deb ... 176s Unpacking pkgconf:arm64 (1.8.1-2) ... 176s Selecting previously unselected package pkg-config:arm64. 176s Preparing to unpack .../147-pkg-config_1.8.1-2_arm64.deb ... 176s Unpacking pkg-config:arm64 (1.8.1-2) ... 176s Selecting previously unselected package liblzma-dev:arm64. 176s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_arm64.deb ... 176s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 176s Selecting previously unselected package r-base-dev. 176s Preparing to unpack .../149-r-base-dev_4.3.3-2build1_all.deb ... 176s Unpacking r-base-dev (4.3.3-2build1) ... 176s Selecting previously unselected package pkg-r-autopkgtest. 176s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 176s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 176s Selecting previously unselected package r-bioc-biocgenerics. 176s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 176s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 177s Selecting previously unselected package r-bioc-biobase. 177s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_arm64.deb ... 177s Unpacking r-bioc-biobase (2.62.0-1) ... 177s Selecting previously unselected package r-bioc-s4vectors. 177s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 177s Selecting previously unselected package r-bioc-iranges. 177s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_arm64.deb ... 177s Unpacking r-bioc-iranges (2.36.0-1) ... 177s Selecting previously unselected package r-cran-dbi. 177s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 177s Unpacking r-cran-dbi (1.2.2-1) ... 177s Selecting previously unselected package r-cran-bit. 177s Preparing to unpack .../156-r-cran-bit_4.0.5-1_arm64.deb ... 177s Unpacking r-cran-bit (4.0.5-1) ... 177s Selecting previously unselected package r-cran-bit64. 177s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_arm64.deb ... 177s Unpacking r-cran-bit64 (4.0.5-1) ... 177s Selecting previously unselected package r-cran-rlang. 177s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_arm64.deb ... 177s Unpacking r-cran-rlang (1.1.3-1) ... 177s Selecting previously unselected package r-cran-cli. 177s Preparing to unpack .../159-r-cran-cli_3.6.2-1_arm64.deb ... 177s Unpacking r-cran-cli (3.6.2-1) ... 177s Selecting previously unselected package r-cran-glue. 177s Preparing to unpack .../160-r-cran-glue_1.7.0-1_arm64.deb ... 177s Unpacking r-cran-glue (1.7.0-1) ... 177s Selecting previously unselected package r-cran-lifecycle. 177s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 177s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 177s Selecting previously unselected package r-cran-vctrs. 177s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_arm64.deb ... 177s Unpacking r-cran-vctrs (0.6.5-1) ... 177s Selecting previously unselected package r-cran-blob. 177s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 177s Unpacking r-cran-blob (1.2.4-1) ... 177s Selecting previously unselected package r-cran-fastmap. 177s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 177s Unpacking r-cran-fastmap (1.1.1-1) ... 177s Selecting previously unselected package r-cran-cachem. 177s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_arm64.deb ... 177s Unpacking r-cran-cachem (1.0.8-1) ... 178s Selecting previously unselected package r-cran-memoise. 178s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 178s Unpacking r-cran-memoise (2.0.1-1) ... 178s Selecting previously unselected package r-cran-pkgconfig. 178s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 178s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 178s Selecting previously unselected package r-cran-plogr. 178s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 178s Unpacking r-cran-plogr (0.2.0-3build1) ... 178s Selecting previously unselected package r-cran-cpp11. 178s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 178s Unpacking r-cran-cpp11 (0.4.7-1) ... 178s Selecting previously unselected package r-cran-rsqlite. 178s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_arm64.deb ... 178s Unpacking r-cran-rsqlite (2.3.4-1) ... 178s Selecting previously unselected package r-cran-curl. 178s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 178s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-jsonlite. 178s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 178s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 178s Selecting previously unselected package r-cran-mime. 178s Preparing to unpack .../173-r-cran-mime_0.12-1_arm64.deb ... 178s Unpacking r-cran-mime (0.12-1) ... 178s Selecting previously unselected package r-cran-sys. 178s Preparing to unpack .../174-r-cran-sys_3.4.2-1_arm64.deb ... 178s Unpacking r-cran-sys (3.4.2-1) ... 178s Selecting previously unselected package r-cran-askpass. 178s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_arm64.deb ... 178s Unpacking r-cran-askpass (1.2.0-1) ... 178s Selecting previously unselected package r-cran-openssl. 178s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 178s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 178s Selecting previously unselected package r-cran-r6. 178s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 178s Unpacking r-cran-r6 (2.5.1-1) ... 178s Selecting previously unselected package r-cran-httr. 178s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 178s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 178s Selecting previously unselected package r-cran-png. 178s Preparing to unpack .../179-r-cran-png_0.1-8-1_arm64.deb ... 178s Unpacking r-cran-png (0.1-8-1) ... 178s Selecting previously unselected package r-bioc-zlibbioc. 178s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 178s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 178s Selecting previously unselected package r-bioc-xvector. 178s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_arm64.deb ... 178s Unpacking r-bioc-xvector (0.42.0-1) ... 178s Selecting previously unselected package r-cran-bitops. 178s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_arm64.deb ... 178s Unpacking r-cran-bitops (1.0-7-1) ... 178s Selecting previously unselected package r-cran-rcurl. 178s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 178s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 178s Selecting previously unselected package r-bioc-genomeinfodbdata. 178s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 178s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 179s Selecting previously unselected package r-bioc-genomeinfodb. 179s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 179s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 179s Selecting previously unselected package r-cran-crayon. 179s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 179s Unpacking r-cran-crayon (1.5.2-1) ... 179s Selecting previously unselected package r-bioc-biostrings. 179s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 179s Selecting previously unselected package r-bioc-keggrest. 179s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 179s Selecting previously unselected package r-bioc-annotationdbi. 179s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 179s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 179s Selecting previously unselected package r-bioc-genomicranges. 179s Preparing to unpack .../190-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 179s Selecting previously unselected package r-cran-lazyeval. 179s Preparing to unpack .../191-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 179s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 179s Selecting previously unselected package r-bioc-annotationfilter. 179s Preparing to unpack .../192-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-generics. 179s Preparing to unpack .../193-r-cran-generics_0.1.3-1_all.deb ... 179s Unpacking r-cran-generics (0.1.3-1) ... 179s Selecting previously unselected package r-cran-magrittr. 179s Preparing to unpack .../194-r-cran-magrittr_2.0.3-1_arm64.deb ... 179s Unpacking r-cran-magrittr (2.0.3-1) ... 179s Selecting previously unselected package r-cran-fansi. 179s Preparing to unpack .../195-r-cran-fansi_1.0.5-1_arm64.deb ... 179s Unpacking r-cran-fansi (1.0.5-1) ... 179s Selecting previously unselected package r-cran-utf8. 180s Preparing to unpack .../196-r-cran-utf8_1.2.4-1_arm64.deb ... 180s Unpacking r-cran-utf8 (1.2.4-1) ... 180s Selecting previously unselected package r-cran-pillar. 180s Preparing to unpack .../197-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 180s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-tibble. 180s Preparing to unpack .../198-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 180s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 180s Selecting previously unselected package r-cran-withr. 180s Preparing to unpack .../199-r-cran-withr_2.5.0-1_all.deb ... 180s Unpacking r-cran-withr (2.5.0-1) ... 180s Selecting previously unselected package r-cran-tidyselect. 180s Preparing to unpack .../200-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 180s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-dplyr. 180s Preparing to unpack .../201-r-cran-dplyr_1.1.4-1_arm64.deb ... 180s Unpacking r-cran-dplyr (1.1.4-1) ... 180s Selecting previously unselected package r-cran-purrr. 180s Preparing to unpack .../202-r-cran-purrr_1.0.2-1_arm64.deb ... 180s Unpacking r-cran-purrr (1.0.2-1) ... 180s Selecting previously unselected package r-cran-stringi. 180s Preparing to unpack .../203-r-cran-stringi_1.8.3-1_arm64.deb ... 180s Unpacking r-cran-stringi (1.8.3-1) ... 180s Selecting previously unselected package r-cran-stringr. 180s Preparing to unpack .../204-r-cran-stringr_1.5.1-1_all.deb ... 180s Unpacking r-cran-stringr (1.5.1-1) ... 180s Selecting previously unselected package r-cran-tidyr. 180s Preparing to unpack .../205-r-cran-tidyr_1.3.1-1_arm64.deb ... 180s Unpacking r-cran-tidyr (1.3.1-1) ... 180s Selecting previously unselected package r-cran-dbplyr. 180s Preparing to unpack .../206-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 180s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 180s Selecting previously unselected package r-cran-filelock. 180s Preparing to unpack .../207-r-cran-filelock_1.0.3-1_arm64.deb ... 180s Unpacking r-cran-filelock (1.0.3-1) ... 180s Selecting previously unselected package r-bioc-biocfilecache. 180s Preparing to unpack .../208-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 180s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-biocmanager. 181s Preparing to unpack .../209-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 181s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 181s Selecting previously unselected package r-bioc-biocversion. 181s Preparing to unpack .../210-r-bioc-biocversion_3.18.1-1_all.deb ... 181s Unpacking r-bioc-biocversion (3.18.1-1) ... 181s Selecting previously unselected package r-cran-rappdirs. 181s Preparing to unpack .../211-r-cran-rappdirs_0.3.3-1_arm64.deb ... 181s Unpacking r-cran-rappdirs (0.3.3-1) ... 181s Selecting previously unselected package r-cran-yaml. 181s Preparing to unpack .../212-r-cran-yaml_2.3.8-1_arm64.deb ... 181s Unpacking r-cran-yaml (2.3.8-1) ... 181s Selecting previously unselected package r-cran-pkgkitten. 181s Preparing to unpack .../213-r-cran-pkgkitten_0.2.3-1_all.deb ... 181s Unpacking r-cran-pkgkitten (0.2.3-1) ... 181s Selecting previously unselected package r-cran-rcpp. 181s Preparing to unpack .../214-r-cran-rcpp_1.0.12-1_arm64.deb ... 181s Unpacking r-cran-rcpp (1.0.12-1) ... 181s Selecting previously unselected package r-cran-later. 181s Preparing to unpack .../215-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 181s Unpacking r-cran-later (1.3.2+dfsg-1) ... 181s Selecting previously unselected package r-cran-promises. 181s Preparing to unpack .../216-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 181s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 181s Selecting previously unselected package r-cran-httpuv. 181s Preparing to unpack .../217-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 181s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 181s Selecting previously unselected package r-cran-xtable. 181s Preparing to unpack .../218-r-cran-xtable_1%3a1.8-4-2_all.deb ... 181s Unpacking r-cran-xtable (1:1.8-4-2) ... 181s Selecting previously unselected package r-cran-base64enc. 181s Preparing to unpack .../219-r-cran-base64enc_0.1-3-3_arm64.deb ... 181s Unpacking r-cran-base64enc (0.1-3-3) ... 181s Selecting previously unselected package r-cran-digest. 181s Preparing to unpack .../220-r-cran-digest_0.6.34-1_arm64.deb ... 181s Unpacking r-cran-digest (0.6.34-1) ... 181s Selecting previously unselected package r-cran-ellipsis. 181s Preparing to unpack .../221-r-cran-ellipsis_0.3.2-2_arm64.deb ... 181s Unpacking r-cran-ellipsis (0.3.2-2) ... 182s Selecting previously unselected package r-cran-htmltools. 182s Preparing to unpack .../222-r-cran-htmltools_0.5.7-1_arm64.deb ... 182s Unpacking r-cran-htmltools (0.5.7-1) ... 182s Selecting previously unselected package r-cran-fontawesome. 182s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 182s Unpacking r-cran-fontawesome (0.5.2-1) ... 182s Selecting previously unselected package r-cran-sourcetools. 182s Preparing to unpack .../224-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 182s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 182s Selecting previously unselected package r-cran-commonmark. 182s Preparing to unpack .../225-r-cran-commonmark_1.9.1-1_arm64.deb ... 182s Unpacking r-cran-commonmark (1.9.1-1) ... 182s Selecting previously unselected package r-cran-jquerylib. 182s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 182s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 182s Selecting previously unselected package r-cran-fs. 182s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 182s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 182s Selecting previously unselected package r-cran-sass. 182s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 182s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 182s Selecting previously unselected package r-cran-bslib. 182s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 182s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 182s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 182s Preparing to unpack .../230-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 182s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 182s Selecting previously unselected package r-cran-shiny. 182s Preparing to unpack .../231-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 182s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 182s Selecting previously unselected package r-cran-evaluate. 182s Preparing to unpack .../232-r-cran-evaluate_0.23-1_all.deb ... 182s Unpacking r-cran-evaluate (0.23-1) ... 182s Selecting previously unselected package r-cran-xfun. 182s Preparing to unpack .../233-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 182s Unpacking r-cran-xfun (0.41+dfsg-1) ... 182s Selecting previously unselected package r-cran-highr. 182s Preparing to unpack .../234-r-cran-highr_0.10+dfsg-1_all.deb ... 182s Unpacking r-cran-highr (0.10+dfsg-1) ... 183s Selecting previously unselected package libjs-mathjax. 183s Preparing to unpack .../235-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 183s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 183s Selecting previously unselected package r-cran-knitr. 183s Preparing to unpack .../236-r-cran-knitr_1.45+dfsg-1_all.deb ... 183s Unpacking r-cran-knitr (1.45+dfsg-1) ... 183s Selecting previously unselected package r-cran-tinytex. 183s Preparing to unpack .../237-r-cran-tinytex_0.49-1_all.deb ... 183s Unpacking r-cran-tinytex (0.49-1) ... 183s Selecting previously unselected package libjs-modernizr. 183s Preparing to unpack .../238-libjs-modernizr_2.6.2+ds1-5_all.deb ... 183s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 183s Selecting previously unselected package r-cran-rmarkdown. 183s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 183s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 183s Selecting previously unselected package r-cran-htmlwidgets. 183s Preparing to unpack .../240-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 183s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 183s Selecting previously unselected package r-cran-crosstalk. 183s Preparing to unpack .../241-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 183s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 184s Selecting previously unselected package r-cran-dt. 184s Preparing to unpack .../242-r-cran-dt_0.31+dfsg-1_all.deb ... 184s Unpacking r-cran-dt (0.31+dfsg-1) ... 184s Selecting previously unselected package r-bioc-interactivedisplaybase. 184s Preparing to unpack .../243-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-annotationhub. 184s Preparing to unpack .../244-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-lattice. 184s Preparing to unpack .../245-r-cran-lattice_0.22-5-1_arm64.deb ... 184s Unpacking r-cran-lattice (0.22-5-1) ... 184s Selecting previously unselected package r-cran-matrix. 184s Preparing to unpack .../246-r-cran-matrix_1.6-5-1_arm64.deb ... 184s Unpacking r-cran-matrix (1.6-5-1) ... 184s Selecting previously unselected package r-cran-matrixstats. 184s Preparing to unpack .../247-r-cran-matrixstats_1.2.0-1_arm64.deb ... 184s Unpacking r-cran-matrixstats (1.2.0-1) ... 184s Selecting previously unselected package r-bioc-matrixgenerics. 184s Preparing to unpack .../248-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 184s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 184s Selecting previously unselected package r-cran-abind. 184s Preparing to unpack .../249-r-cran-abind_1.4-5-2_all.deb ... 184s Unpacking r-cran-abind (1.4-5-2) ... 184s Selecting previously unselected package r-bioc-s4arrays. 184s Preparing to unpack .../250-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-sparsearray. 184s Preparing to unpack .../251-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 184s Selecting previously unselected package r-bioc-delayedarray. 184s Preparing to unpack .../252-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 184s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 184s Selecting previously unselected package r-bioc-beachmat. 184s Preparing to unpack .../253-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 184s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 184s Selecting previously unselected package r-bioc-biocio. 184s Preparing to unpack .../254-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 184s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 184s Selecting previously unselected package r-cran-formatr. 185s Preparing to unpack .../255-r-cran-formatr_1.14-1_all.deb ... 185s Unpacking r-cran-formatr (1.14-1) ... 185s Selecting previously unselected package r-cran-lambda.r. 185s Preparing to unpack .../256-r-cran-lambda.r_1.2.4-2build1_all.deb ... 185s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 185s Selecting previously unselected package r-cran-futile.options. 185s Preparing to unpack .../257-r-cran-futile.options_1.0.1-3build1_all.deb ... 185s Unpacking r-cran-futile.options (1.0.1-3build1) ... 185s Selecting previously unselected package r-cran-futile.logger. 185s Preparing to unpack .../258-r-cran-futile.logger_1.4.3-4build1_all.deb ... 185s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 185s Selecting previously unselected package r-cran-snow. 185s Preparing to unpack .../259-r-cran-snow_1%3a0.4.4-2_all.deb ... 185s Unpacking r-cran-snow (1:0.4.4-2) ... 185s Selecting previously unselected package r-cran-codetools. 185s Preparing to unpack .../260-r-cran-codetools_0.2-19-1_all.deb ... 185s Unpacking r-cran-codetools (0.2-19-1) ... 185s Selecting previously unselected package r-cran-bh. 185s Preparing to unpack .../261-r-cran-bh_1.84.0-1_all.deb ... 185s Unpacking r-cran-bh (1.84.0-1) ... 185s Selecting previously unselected package r-bioc-biocparallel. 185s Preparing to unpack .../262-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 185s Unpacking r-bioc-biocparallel (1.36.0-1) ... 185s Selecting previously unselected package r-cran-rcpphnsw. 185s Preparing to unpack .../263-r-cran-rcpphnsw_0.5.0+ds-1_arm64.deb ... 185s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 185s Selecting previously unselected package r-bioc-biocneighbors. 185s Preparing to unpack .../264-r-bioc-biocneighbors_1.20.2+ds-1_arm64.deb ... 185s Unpacking r-bioc-biocneighbors (1.20.2+ds-1) ... 185s Selecting previously unselected package r-bioc-scaledmatrix. 185s Preparing to unpack .../265-r-bioc-scaledmatrix_1.10.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-irlba. 185s Preparing to unpack .../266-r-cran-irlba_2.3.5.1-2_arm64.deb ... 185s Unpacking r-cran-irlba (2.3.5.1-2) ... 185s Selecting previously unselected package r-cran-rsvd. 185s Preparing to unpack .../267-r-cran-rsvd_1.0.5-1_all.deb ... 185s Unpacking r-cran-rsvd (1.0.5-1) ... 185s Selecting previously unselected package r-bioc-biocsingular. 185s Preparing to unpack .../268-r-bioc-biocsingular_1.18.0+ds-1_arm64.deb ... 185s Unpacking r-bioc-biocsingular (1.18.0+ds-1) ... 185s Selecting previously unselected package r-cran-bookdown. 185s Preparing to unpack .../269-r-cran-bookdown_0.37+dfsg-1_all.deb ... 185s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 185s Selecting previously unselected package tex-common. 185s Preparing to unpack .../270-tex-common_6.18_all.deb ... 185s Unpacking tex-common (6.18) ... 185s Selecting previously unselected package t1utils. 185s Preparing to unpack .../271-t1utils_1.41-4build2_arm64.deb ... 185s Unpacking t1utils (1.41-4build2) ... 185s Selecting previously unselected package texlive-binaries. 186s Preparing to unpack .../272-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 186s Unpacking texlive-binaries (2023.20230311.66589-9) ... 186s Selecting previously unselected package texlive-base. 186s Preparing to unpack .../273-texlive-base_2023.20240207-1_all.deb ... 186s Unpacking texlive-base (2023.20240207-1) ... 187s Selecting previously unselected package texlive-latex-base. 187s Preparing to unpack .../274-texlive-latex-base_2023.20240207-1_all.deb ... 187s Unpacking texlive-latex-base (2023.20240207-1) ... 187s Selecting previously unselected package texlive-bibtex-extra. 187s Preparing to unpack .../275-texlive-bibtex-extra_2023.20240207-1_all.deb ... 187s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 189s Selecting previously unselected package r-bioc-biocstyle. 189s Preparing to unpack .../276-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 189s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 189s Selecting previously unselected package r-cran-xml. 189s Preparing to unpack .../277-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 189s Unpacking r-cran-xml (3.99-0.16.1-1) ... 189s Selecting previously unselected package r-cran-hms. 189s Preparing to unpack .../278-r-cran-hms_1.1.3-1_all.deb ... 189s Unpacking r-cran-hms (1.1.3-1) ... 189s Selecting previously unselected package r-cran-prettyunits. 189s Preparing to unpack .../279-r-cran-prettyunits_1.2.0-1_all.deb ... 189s Unpacking r-cran-prettyunits (1.2.0-1) ... 189s Selecting previously unselected package r-cran-progress. 189s Preparing to unpack .../280-r-cran-progress_1.2.3-1_all.deb ... 189s Unpacking r-cran-progress (1.2.3-1) ... 189s Selecting previously unselected package r-cran-xml2. 189s Preparing to unpack .../281-r-cran-xml2_1.3.6-1_arm64.deb ... 189s Unpacking r-cran-xml2 (1.3.6-1) ... 189s Selecting previously unselected package r-bioc-biomart. 189s Preparing to unpack .../282-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 189s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 189s Selecting previously unselected package r-cran-cluster. 190s Preparing to unpack .../283-r-cran-cluster_2.1.6-1_arm64.deb ... 190s Unpacking r-cran-cluster (2.1.6-1) ... 190s Selecting previously unselected package r-cran-igraph. 190s Preparing to unpack .../284-r-cran-igraph_1.6.0-1_arm64.deb ... 190s Unpacking r-cran-igraph (1.6.0-1) ... 190s Selecting previously unselected package r-bioc-bluster. 190s Preparing to unpack .../285-r-bioc-bluster_1.12.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-bluster (1.12.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-sparsematrixstats. 190s Preparing to unpack .../286-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-delayedmatrixstats. 190s Preparing to unpack .../287-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 190s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 190s Selecting previously unselected package r-cran-statmod. 190s Preparing to unpack .../288-r-cran-statmod_1.5.0-1_arm64.deb ... 190s Unpacking r-cran-statmod (1.5.0-1) ... 190s Selecting previously unselected package r-bioc-limma. 190s Preparing to unpack .../289-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 190s Selecting previously unselected package r-cran-locfit. 190s Preparing to unpack .../290-r-cran-locfit_1.5-9.8-1_arm64.deb ... 190s Unpacking r-cran-locfit (1.5-9.8-1) ... 190s Selecting previously unselected package r-bioc-edger. 190s Preparing to unpack .../291-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rhtslib. 190s Preparing to unpack .../292-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rsamtools. 190s Preparing to unpack .../293-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-summarizedexperiment. 190s Preparing to unpack .../294-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 190s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 190s Selecting previously unselected package r-bioc-genomicalignments. 190s Preparing to unpack .../295-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 190s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 190s Selecting previously unselected package r-cran-rjson. 190s Preparing to unpack .../296-r-cran-rjson_0.2.21-1_arm64.deb ... 190s Unpacking r-cran-rjson (0.2.21-1) ... 190s Selecting previously unselected package r-cran-restfulr. 190s Preparing to unpack .../297-r-cran-restfulr_0.0.15-1_arm64.deb ... 190s Unpacking r-cran-restfulr (0.0.15-1) ... 190s Selecting previously unselected package r-bioc-rtracklayer. 191s Preparing to unpack .../298-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 191s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 191s Selecting previously unselected package r-bioc-genomicfeatures. 191s Preparing to unpack .../299-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 191s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 191s Selecting previously unselected package r-bioc-protgenerics. 191s Preparing to 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associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 200s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 200s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 200s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 200s Setting up r-cran-bitops (1.0-7-1) ... 200s Setting up r-bioc-biocversion (3.18.1-1) ... 200s Setting up r-cran-rprojroot (2.0.4-1) ... 200s Setting up r-cran-bit64 (4.0.5-1) ... 200s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 200s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 200s Setting up r-cran-askpass (1.2.0-1) ... 200s Setting up r-cran-fastmap (1.1.1-1) ... 200s Setting up r-cran-png (0.1-8-1) ... 200s Setting up r-bioc-biobase (2.62.0-1) ... 200s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 200s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 200s Setting up 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Setting up texlive-bibtex-extra (2023.20240207-1) ... 200s Setting up r-cran-rsvd (1.0.5-1) ... 200s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 200s Setting up r-cran-httr (1.4.7+dfsg-1) ... 200s Setting up r-cran-hms (1.1.3-1) ... 200s Setting up r-cran-memoise (2.0.1-1) ... 200s Setting up r-cran-promises (1.2.1+dfsg-1) ... 200s Setting up r-cran-purrr (1.0.2-1) ... 200s Setting up r-cran-blob (1.2.4-1) ... 200s Setting up r-cran-htmltools (0.5.7-1) ... 200s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 200s Setting up r-bioc-xvector (0.42.0-1) ... 200s Setting up r-cran-pkgbuild (1.4.3-1) ... 200s Setting up r-cran-sass (0.4.8+dfsg-1) ... 200s Setting up r-cran-dplyr (1.1.4-1) ... 200s Setting up r-cran-rsqlite (2.3.4-1) ... 200s Setting up r-cran-progress (1.2.3-1) ... 200s Setting up r-bioc-biocneighbors (1.20.2+ds-1) ... 200s Setting up r-cran-pkgload (1.3.4-1) ... 200s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 200s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 200s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 200s Setting up r-cran-rematch2 (2.1.2-2build1) ... 200s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 200s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 200s Setting up r-cran-fontawesome (0.5.2-1) ... 200s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 200s Setting up r-bioc-bluster (1.12.0+dfsg-1) ... 200s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 200s Setting up r-cran-waldo (0.5.2-1build1) ... 200s Setting up r-cran-tidyr (1.3.1-1) ... 200s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 200s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 200s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 200s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 200s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 200s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 200s Setting up r-bioc-annotationdbi (1.64.1-1) ... 200s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 200s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 200s Setting up r-cran-testthat (3.2.1-1) ... 200s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 200s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 200s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 200s Setting up r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 200s Setting up r-bioc-genomicalignments (1.38.2-1) ... 200s Setting up r-cran-bookdown (0.37+dfsg-1) ... 200s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 200s Setting up r-bioc-rtracklayer (1.62.0-1) ... 200s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 200s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 200s Setting up r-bioc-biocsingular (1.18.0+ds-1) ... 200s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 200s Setting up r-bioc-scuttle (1.12.0+dfsg-1) ... 200s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 200s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 200s Setting up r-cran-dt (0.31+dfsg-1) ... 200s Setting up r-bioc-scran (1.30.2+dfsg-1) ... 200s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 200s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 200s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 200s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 200s Setting up autopkgtest-satdep (0) ... 200s Processing triggers for man-db (2.12.0-3) ... 201s Processing triggers for install-info (7.1-3) ... 201s Processing triggers for libc-bin (2.39-0ubuntu2) ... 201s Processing triggers for tex-common (6.18) ... 201s Running updmap-sys. This may take some time... done. 201s Running mktexlsr /var/lib/texmf ... done. 201s Building format(s) --all. 239s This may take some time... done. 255s (Reading database ... 128012 files and directories currently installed.) 255s Removing autopkgtest-satdep (0) ... 255s autopkgtest [17:48:49]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 255s autopkgtest [17:48:49]: test pkg-r-autopkgtest: [----------------------- 256s Test: Try to load the R library scuttle 257s 257s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 257s Copyright (C) 2024 The R Foundation for Statistical Computing 257s Platform: aarch64-unknown-linux-gnu (64-bit) 257s 257s R is free software and comes with ABSOLUTELY NO WARRANTY. 257s You are welcome to redistribute it under certain conditions. 257s Type 'license()' or 'licence()' for distribution details. 257s 257s R is a collaborative project with many contributors. 257s Type 'contributors()' for more information and 257s 'citation()' on how to cite R or R packages in publications. 257s 257s Type 'demo()' for some demos, 'help()' for on-line help, or 257s 'help.start()' for an HTML browser interface to help. 257s Type 'q()' to quit R. 257s 257s > library('scuttle') 257s Loading required package: SingleCellExperiment 257s Loading required package: SummarizedExperiment 257s Loading required package: MatrixGenerics 257s Loading required package: matrixStats 257s 257s Attaching package: ‘MatrixGenerics’ 257s 257s The following objects are masked from ‘package:matrixStats’: 257s 257s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 257s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 257s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 257s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 257s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 257s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 257s colWeightedMeans, colWeightedMedians, colWeightedSds, 257s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 257s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 257s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 257s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 257s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 257s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 257s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 257s rowWeightedSds, rowWeightedVars 257s 257s Loading required package: GenomicRanges 257s Loading required package: stats4 257s Loading required package: BiocGenerics 257s 257s Attaching package: ‘BiocGenerics’ 257s 257s The following objects are masked from ‘package:stats’: 257s 257s IQR, mad, sd, var, xtabs 257s 257s The following objects are masked from ‘package:base’: 257s 257s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 257s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 257s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 257s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 257s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 257s table, tapply, union, unique, unsplit, which.max, which.min 257s 257s Loading required package: S4Vectors 258s 258s Attaching package: ‘S4Vectors’ 258s 258s The following object is masked from ‘package:utils’: 258s 258s findMatches 258s 258s The following objects are masked from ‘package:base’: 258s 258s expand.grid, I, unname 258s 258s Loading required package: IRanges 258s Loading required package: GenomeInfoDb 259s Loading required package: Biobase 260s Welcome to Bioconductor 260s 260s Vignettes contain introductory material; view with 260s 'browseVignettes()'. To cite Bioconductor, see 260s 'citation("Biobase")', and for packages 'citation("pkgname")'. 260s 260s 260s Attaching package: ‘Biobase’ 260s 260s The following object is masked from ‘package:MatrixGenerics’: 260s 260s rowMedians 260s 260s The following objects are masked from ‘package:matrixStats’: 260s 260s anyMissing, rowMedians 260s 264s > 264s > 264s Other tests are currently unsupported! 264s They will be progressively added. 265s autopkgtest [17:48:59]: test pkg-r-autopkgtest: -----------------------] 265s autopkgtest [17:48:59]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 265s pkg-r-autopkgtest PASS 265s autopkgtest [17:48:59]: @@@@@@@@@@@@@@@@@@@@ summary 265s pkg-r-autopkgtest PASS 276s Creating nova instance adt-noble-arm64-r-bioc-scuttle-20240316-174434-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...