0s autopkgtest [17:44:02]: starting date and time: 2024-03-16 17:44:02+0000 0s autopkgtest [17:44:02]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:44:02]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.v0smhmk3/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-scrnaseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-20.secgroup --name adt-noble-arm64-r-bioc-scrnaseq-20240316-174402-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 101s autopkgtest [17:45:43]: testbed dpkg architecture: arm64 101s autopkgtest [17:45:43]: testbed apt version: 2.7.12 101s autopkgtest [17:45:43]: @@@@@@@@@@@@@@@@@@@@ test bed setup 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 102s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 102s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 102s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 102s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 102s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 102s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 102s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 102s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 103s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 103s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 103s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 104s Fetched 9060 kB in 2s (5306 kB/s) 104s Reading package lists... 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 108s Calculating upgrade... 109s The following packages will be REMOVED: 109s libglib2.0-0 libssl3 109s The following NEW packages will be installed: 109s libglib2.0-0t64 libssl3t64 xdg-user-dirs 109s The following packages have been kept back: 109s curl 109s The following packages will be upgraded: 109s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 109s ubuntu-minimal ubuntu-standard 109s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 109s Need to get 4613 kB of archives. 109s After this operation, 211 kB of additional disk space will be used. 109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 109s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 109s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 109s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 110s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 110s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 110s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 110s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 110s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 111s Fetched 4613 kB in 1s (5841 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 112s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 112s udisks2 depends on libglib2.0-0 (>= 2.77.0). 112s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 112s python3-gi depends on libglib2.0-0 (>= 2.77.0). 112s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 112s netplan.io depends on libglib2.0-0 (>= 2.70.0). 112s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 112s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 112s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 112s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 112s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 112s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 112s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 112s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s fwupd depends on libglib2.0-0 (>= 2.79.0). 112s bolt depends on libglib2.0-0 (>= 2.56.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 112s Selecting previously unselected package libglib2.0-0t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 112s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 112s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 112s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 112s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 112s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 112s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 112s wget depends on libssl3 (>= 3.0.0). 112s u-boot-tools depends on libssl3 (>= 3.0.0). 112s tnftp depends on libssl3 (>= 3.0.0). 112s tcpdump depends on libssl3 (>= 3.0.0). 112s systemd-resolved depends on libssl3 (>= 3.0.0). 112s systemd depends on libssl3 (>= 3.0.0). 112s sudo depends on libssl3 (>= 3.0.0). 112s sbsigntool depends on libssl3 (>= 3.0.0). 112s rsync depends on libssl3 (>= 3.0.0). 112s python3-cryptography depends on libssl3 (>= 3.0.0). 112s openssh-server depends on libssl3 (>= 3.0.10). 112s openssh-client depends on libssl3 (>= 3.0.10). 112s mtd-utils depends on libssl3 (>= 3.0.0). 112s mokutil depends on libssl3 (>= 3.0.0). 112s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 112s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 112s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 112s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 112s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 112s libnvme1 depends on libssl3 (>= 3.0.0). 112s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 112s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 112s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 112s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 112s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 112s kmod depends on libssl3 (>= 3.0.0). 112s dhcpcd-base depends on libssl3 (>= 3.0.0). 112s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 112s Selecting previously unselected package libssl3t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 112s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 112s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 112s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 112s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 112s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 112s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 112s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 112s Unpacking ubuntu-minimal (1.536) over (1.535) ... 112s Selecting previously unselected package xdg-user-dirs. 112s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 112s Unpacking xdg-user-dirs (0.18-1) ... 112s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 112s Unpacking ubuntu-standard (1.536) over (1.535) ... 112s Setting up ubuntu-minimal (1.536) ... 112s Setting up xdg-user-dirs (0.18-1) ... 112s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 112s Setting up libtirpc-common (1.3.4+ds-1.1) ... 112s Setting up ubuntu-standard (1.536) ... 112s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 113s No schema files found: doing nothing. 113s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 113s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 113s Setting up openssl (3.0.13-0ubuntu1) ... 113s Setting up readline-common (8.2-3.1) ... 113s Processing triggers for man-db (2.12.0-3) ... 113s Processing triggers for install-info (7.1-3) ... 113s Processing triggers for libc-bin (2.39-0ubuntu2) ... 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 115s sh: Attempting to set up Debian/Ubuntu apt sources automatically 115s sh: Distribution appears to be Ubuntu 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s eatmydata is already the newest version (131-1). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s dbus is already the newest version (1.14.10-4ubuntu1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s rng-tools-debian is already the newest version (2.4). 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 120s Building dependency tree... 120s Reading state information... 120s The following packages will be REMOVED: 120s cloud-init* python3-configobj* python3-debconf* 120s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 120s After this operation, 3252 kB disk space will be freed. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 121s Removing cloud-init (24.1.1-0ubuntu1) ... 121s Removing python3-configobj (5.0.8-3) ... 121s Removing python3-debconf (1.5.86) ... 121s Processing triggers for man-db (2.12.0-3) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 122s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 123s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 123s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 123s invoke-rc.d: policy-rc.d denied execution of try-restart. 123s Reading package lists... 124s Building dependency tree... 124s Reading state information... 124s linux-generic is already the newest version (6.8.0-11.11+1). 124s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 127s Reading package lists... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s autopkgtest [17:46:12]: rebooting testbed after setup commands that affected boot 339s autopkgtest [17:49:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 341s autopkgtest [17:49:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scrnaseq 344s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (dsc) [2360 B] 344s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (tar) [87.0 kB] 344s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scrnaseq 2.16.0+ds-1 (diff) [5756 B] 344s gpgv: Signature made Fri Dec 1 15:57:02 2023 UTC 344s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 344s gpgv: issuer "tille@debian.org" 344s gpgv: Can't check signature: No public key 344s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scrnaseq_2.16.0+ds-1.dsc: no acceptable signature found 344s autopkgtest [17:49:46]: testing package r-bioc-scrnaseq version 2.16.0+ds-1 345s autopkgtest [17:49:47]: build not needed 346s autopkgtest [17:49:48]: test pkg-r-autopkgtest: preparing testbed 347s Reading package lists... 347s Building dependency tree... 347s Reading state information... 348s Starting pkgProblemResolver with broken count: 0 348s Starting 2 pkgProblemResolver with broken count: 0 348s Done 348s The following additional packages will be installed: 348s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 348s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 348s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 348s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 348s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 348s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 348s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 348s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 348s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 348s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 349s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 349s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 349s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 349s libjs-highlight.js libjs-jquery libjs-jquery-datatables 349s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 349s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 349s libjs-popper.js libjs-prettify libjs-sifter.js 349s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 349s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 349s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 349s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 349s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 349s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 349s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 349s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 349s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 349s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 349s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 349s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 349s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 349s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 349s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 349s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 349s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 349s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 349s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 349s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 349s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 349s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 349s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 349s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 349s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 349s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 349s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 349s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 349s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 349s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 349s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 349s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 349s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 349s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 349s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 349s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 349s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 349s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 349s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 349s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 349s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow 349s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 349s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 349s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 349s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 349s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 349s xdg-utils zip zlib1g-dev 349s Suggested packages: 349s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 349s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 349s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 349s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 349s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 349s libboost-context1.83-dev libboost-contract1.83-dev 349s libboost-coroutine1.83-dev libboost-date-time1.83-dev 349s libboost-exception1.83-dev libboost-fiber1.83-dev 349s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 349s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 349s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 349s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 349s libboost-numpy1.83-dev libboost-program-options1.83-dev 349s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 349s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 349s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 349s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 349s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 349s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 349s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 349s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 349s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 349s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 349s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 349s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 349s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph 349s r-bioc-variantannotation r-bioc-all r-bioc-affy r-bioc-deseq2 349s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 349s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 349s r-cran-webmockr r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter 349s r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-gviz 349s r-cran-r.utils r-bioc-edger r-cran-markdown r-bioc-dexseq 349s r-bioc-sparsematrixstats r-bioc-limma r-cran-rtsne r-bioc-rhdf5 349s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-spelling r-cran-rstudioapi 349s r-cran-rmysql r-cran-lubridate r-cran-getopt r-cran-formattable 349s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 349s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 349s r-cran-rlecuyer r-cran-bench r-cran-here r-cran-plm r-cran-zoo debhelper 349s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 349s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 349s Recommended packages: 349s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 349s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-rstudioapi 349s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 349s r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery 349s r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-scales 349s r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh r-cran-broom 349s r-cran-rmysql r-cran-future w3m | www-browser r-cran-unitizer r-cran-rsvg 349s r-cran-survival r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg 349s r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 349s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 349s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 349s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 349s r-cran-pingr r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest 349s r-cran-gert r-cran-rvest r-cran-data.table r-cran-formattable r-cran-pkgdown 349s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 349s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 349s The following NEW packages will be installed: 349s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 349s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 349s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 349s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 349s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 349s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 349s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 349s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 349s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 349s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 349s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 349s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 349s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 349s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 349s libjs-highlight.js libjs-jquery libjs-jquery-datatables 349s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 349s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 349s libjs-popper.js libjs-prettify libjs-sifter.js 349s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 349s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 349s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 349s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 349s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 349s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 349s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 349s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 349s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 349s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 349s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 349s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 349s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 349s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 349s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart 349s r-bioc-biostrings r-bioc-delayedarray r-bioc-ensembldb r-bioc-experimenthub 349s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 349s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-interactivedisplaybase 349s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-protgenerics 349s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 349s r-bioc-s4vectors r-bioc-scrnaseq r-bioc-singlecellexperiment 349s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 349s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 349s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 349s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 349s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 349s r-cran-crosstalk r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-desc 349s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-dt r-cran-ellipsis 349s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 349s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 349s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 349s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 349s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 349s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 349s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 349s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 349s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 349s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 349s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl 349s r-cran-rematch2 r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 349s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow 349s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 349s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 349s r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 349s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 349s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 349s xdg-utils zip zlib1g-dev 349s 0 upgraded, 302 newly installed, 0 to remove and 0 not upgraded. 349s Need to get 425 MB/425 MB of archives. 349s After this operation, 1351 MB of additional disk space will be used. 349s Get:1 /tmp/autopkgtest.UXGTdV/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 349s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 349s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 349s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 349s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 349s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 349s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 349s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 349s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 349s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 349s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 350s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 350s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 350s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 350s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 350s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 350s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 350s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 350s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 350s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 350s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 350s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 350s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 350s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 350s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 351s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 351s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 351s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 351s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 351s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 351s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 351s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 351s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 351s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 351s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 351s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 351s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 351s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 351s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 351s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 351s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 351s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 351s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 351s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 351s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 351s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 351s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 352s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 352s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 352s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 352s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 352s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 352s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 352s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 352s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 352s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 352s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 352s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 352s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 352s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 352s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 352s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 352s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 352s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 352s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 352s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 352s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 352s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 352s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 352s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 352s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 352s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 352s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 352s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 352s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 352s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 352s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 352s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 352s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 352s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 352s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 352s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 352s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 352s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 352s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 352s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 352s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 352s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 352s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 352s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 352s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 353s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 353s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 353s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 353s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 353s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 353s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 353s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 353s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 353s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 353s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 353s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 353s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 353s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 353s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 353s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 353s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 353s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 353s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 353s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 353s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 353s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 353s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 353s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 353s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 353s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 353s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 353s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 353s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 353s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 353s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 353s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 353s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 353s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 353s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 353s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 353s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 353s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 353s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 353s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 354s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 354s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 354s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 354s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 354s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 354s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 354s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 354s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 355s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 355s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 355s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 355s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 355s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 355s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 355s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 355s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 355s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 355s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 355s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 355s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 355s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 355s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 355s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 356s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 356s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 356s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 356s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 356s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 356s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 356s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 356s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 356s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 356s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 356s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 356s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 356s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 356s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 356s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 356s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 356s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 356s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 356s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 356s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 356s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 356s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 356s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 356s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 356s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 356s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 356s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 356s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 356s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 356s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 356s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 356s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 357s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 357s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 357s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 357s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 357s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 357s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 357s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 357s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 357s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 358s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 358s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 358s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 358s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 358s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 358s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 358s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 358s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 358s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 358s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 358s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 358s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 358s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 358s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 358s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 358s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 358s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 358s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 358s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 358s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 358s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 358s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 358s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 358s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 358s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 358s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 358s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 358s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 358s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 358s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 359s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 359s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 359s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 359s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 359s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 359s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 359s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 359s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 359s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 359s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 359s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 359s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 359s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 359s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 359s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 359s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 359s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 359s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 359s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 359s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 359s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 359s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 359s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 359s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 359s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 359s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 359s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 359s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 359s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 359s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 359s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 359s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 359s Get:257 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 359s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 360s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 360s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 360s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 362s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 362s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 362s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 362s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 362s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 362s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 362s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 362s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 362s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 362s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 362s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 362s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 362s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 362s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 362s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 363s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 363s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 363s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 363s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 363s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 363s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 363s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 363s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 363s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 363s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 363s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 363s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 363s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 363s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 363s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 363s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 363s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 363s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 363s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 363s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 363s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 363s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 363s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 363s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 363s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 363s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 365s Preconfiguring packages ... 365s Fetched 425 MB in 14s (29.5 MB/s) 365s Selecting previously unselected package libc-dev-bin. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 365s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 365s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 365s Selecting previously unselected package linux-libc-dev:arm64. 365s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 365s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 365s Selecting previously unselected package libcrypt-dev:arm64. 365s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 365s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 365s Selecting previously unselected package libtirpc-dev:arm64. 365s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 365s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 365s Selecting previously unselected package libnsl-dev:arm64. 365s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 365s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 365s Selecting previously unselected package rpcsvc-proto. 366s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 366s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 366s Selecting previously unselected package libc6-dev:arm64. 366s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 366s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 366s Selecting previously unselected package libisl23:arm64. 366s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 366s Unpacking libisl23:arm64 (0.26-3) ... 366s Selecting previously unselected package libmpc3:arm64. 366s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 366s Unpacking libmpc3:arm64 (1.3.1-1) ... 366s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 366s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package cpp-13. 366s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 366s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 366s Selecting previously unselected package cpp-aarch64-linux-gnu. 366s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package cpp. 366s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 366s Unpacking cpp (4:13.2.0-7ubuntu1) ... 366s Selecting previously unselected package libcc1-0:arm64. 366s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libgomp1:arm64. 366s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libitm1:arm64. 366s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libatomic1:arm64. 366s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 366s Selecting previously unselected package libasan8:arm64. 366s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 366s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package liblsan0:arm64. 367s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libtsan2:arm64. 367s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libubsan1:arm64. 367s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libhwasan0:arm64. 367s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 367s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 367s Selecting previously unselected package libgcc-13-dev:arm64. 367s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 367s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 367s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 367s Selecting previously unselected package gcc-13. 367s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 367s Selecting previously unselected package gcc-aarch64-linux-gnu. 367s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 367s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 367s Selecting previously unselected package gcc. 367s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 367s Unpacking gcc (4:13.2.0-7ubuntu1) ... 367s Selecting previously unselected package libstdc++-13-dev:arm64. 367s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 367s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package g++-13-aarch64-linux-gnu. 368s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 368s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package g++-13. 368s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 368s Unpacking g++-13 (13.2.0-17ubuntu2) ... 368s Selecting previously unselected package g++-aarch64-linux-gnu. 368s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 368s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 368s Selecting previously unselected package g++. 368s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 368s Unpacking g++ (4:13.2.0-7ubuntu1) ... 368s Selecting previously unselected package build-essential. 368s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 368s Unpacking build-essential (12.10ubuntu1) ... 368s Selecting previously unselected package dctrl-tools. 368s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 368s Unpacking dctrl-tools (2.24-3build2) ... 368s Selecting previously unselected package fonts-dejavu-mono. 368s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 368s Unpacking fonts-dejavu-mono (2.37-8) ... 368s Selecting previously unselected package fonts-dejavu-core. 368s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 368s Unpacking fonts-dejavu-core (2.37-8) ... 368s Selecting previously unselected package fontconfig-config. 368s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 369s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 369s Selecting previously unselected package libfontconfig1:arm64. 369s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 369s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 369s Selecting previously unselected package fontconfig. 369s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 369s Unpacking fontconfig (2.15.0-1ubuntu1) ... 369s Selecting previously unselected package fonts-font-awesome. 369s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 369s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 369s Selecting previously unselected package fonts-glyphicons-halflings. 369s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 369s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 369s Selecting previously unselected package fonts-lmodern. 369s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 369s Unpacking fonts-lmodern (2.005-1) ... 369s Selecting previously unselected package fonts-mathjax. 369s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 369s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 369s Selecting previously unselected package libgfortran5:arm64. 369s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 369s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 369s Selecting previously unselected package libgfortran-13-dev:arm64. 369s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 369s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 369s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 369s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 369s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 370s Selecting previously unselected package gfortran-13. 370s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 370s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 370s Selecting previously unselected package gfortran-aarch64-linux-gnu. 370s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 370s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 370s Selecting previously unselected package gfortran. 370s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 370s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 370s Selecting previously unselected package icu-devtools. 370s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 370s Unpacking icu-devtools (74.2-1ubuntu1) ... 370s Selecting previously unselected package javascript-common. 370s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 370s Unpacking javascript-common (11+nmu1) ... 370s Selecting previously unselected package libio-string-perl. 370s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 370s Unpacking libio-string-perl (1.08-4) ... 370s Selecting previously unselected package liblatex-tounicode-perl. 370s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 370s Unpacking liblatex-tounicode-perl (0.54-2) ... 370s Selecting previously unselected package libbibtex-parser-perl. 370s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 370s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 370s Selecting previously unselected package libblas3:arm64. 370s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 370s Unpacking libblas3:arm64 (3.12.0-3) ... 370s Selecting previously unselected package libblas-dev:arm64. 370s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 370s Unpacking libblas-dev:arm64 (3.12.0-3) ... 370s Selecting previously unselected package libboost1.83-dev:arm64. 370s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 370s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 372s Selecting previously unselected package libboost-dev:arm64. 372s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 372s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 372s Selecting previously unselected package libbz2-dev:arm64. 372s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 372s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 372s Selecting previously unselected package libpixman-1-0:arm64. 372s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 372s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 372s Selecting previously unselected package libxcb-render0:arm64. 372s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 372s Unpacking libxcb-render0:arm64 (1.15-1) ... 372s Selecting previously unselected package libxcb-shm0:arm64. 372s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 372s Unpacking libxcb-shm0:arm64 (1.15-1) ... 372s Selecting previously unselected package libxrender1:arm64. 372s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 372s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 372s Selecting previously unselected package libcairo2:arm64. 372s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 372s Unpacking libcairo2:arm64 (1.18.0-1) ... 372s Selecting previously unselected package libdatrie1:arm64. 372s Preparing to unpack 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... 373s Selecting previously unselected package libicu-dev:arm64. 373s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 373s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 373s Selecting previously unselected package libjpeg-turbo8:arm64. 373s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 373s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 373s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 373s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 373s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 373s Selecting previously unselected package libjpeg8:arm64. 373s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 373s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjpeg8-dev:arm64. 373s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 373s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjpeg-dev:arm64. 373s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 373s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 373s Selecting previously unselected package libjs-bootstrap. 373s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 373s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 373s Selecting previously unselected package libjs-popper.js. 373s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 373s Unpacking libjs-popper.js (1.16.1+ds-6) ... 373s Selecting previously unselected package libjs-bootstrap4. 373s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 373s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 373s Selecting previously unselected package libjs-d3. 373s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 373s Unpacking libjs-d3 (3.5.17-4) ... 374s Selecting previously unselected package libjs-es5-shim. 374s Preparing to unpack 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unselected package libjs-sifter.js. 374s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 374s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 374s Selecting previously unselected package libjs-microplugin.js. 374s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 374s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 374s Selecting previously unselected package libjs-jquery-selectize.js. 374s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 374s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 374s Selecting previously unselected package libjs-jquery-ui. 374s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 374s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 374s Selecting previously unselected package libjs-json. 374s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 374s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 374s Selecting previously unselected package libjs-lunr. 374s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 374s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 374s Selecting previously unselected package libjs-prettify. 374s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 374s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 374s Selecting previously unselected package libkpathsea6:arm64. 374s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 374s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 374s Selecting previously unselected package liblapack3:arm64. 374s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 374s Unpacking liblapack3:arm64 (3.12.0-3) ... 374s Selecting previously unselected package liblapack-dev:arm64. 374s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 374s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 374s Selecting previously unselected package liblerc4:arm64. 374s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 374s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 374s Selecting previously unselected package liblua5.4-0:arm64. 374s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 374s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 374s Selecting previously unselected package libncurses-dev:arm64. 374s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 374s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 374s Selecting previously unselected package libthai-data. 375s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 375s Unpacking libthai-data (0.1.29-2) ... 375s Selecting previously unselected package libthai0:arm64. 375s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 375s Unpacking libthai0:arm64 (0.1.29-2) ... 375s Selecting previously unselected package libpango-1.0-0:arm64. 375s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangoft2-1.0-0:arm64. 375s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangocairo-1.0-0:arm64. 375s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpaper1:arm64. 375s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 375s Unpacking libpaper1:arm64 (1.1.29) ... 375s Selecting previously unselected package libpaper-utils. 375s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 375s Unpacking libpaper-utils (1.1.29) ... 375s Selecting previously unselected package libpcre2-16-0:arm64. 375s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-32-0:arm64. 375s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-posix3:arm64. 375s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpcre2-dev:arm64. 375s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 375s Selecting previously unselected package libpkgconf3:arm64. 375s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 375s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 375s Selecting previously unselected package zlib1g-dev:arm64. 375s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 375s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 375s Selecting previously unselected package libpng-dev:arm64. 375s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 375s Unpacking libpng-dev:arm64 (1.6.43-1) ... 375s Selecting previously unselected package libpotrace0:arm64. 375s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 375s Unpacking libpotrace0:arm64 (1.16-2) ... 375s Selecting previously unselected package libptexenc1:arm64. 375s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 375s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 375s Selecting previously unselected package libreadline-dev:arm64. 375s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 375s Unpacking libreadline-dev:arm64 (8.2-3) ... 375s Selecting previously unselected package libsharpyuv0:arm64. 375s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 375s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 375s Selecting previously unselected package libsm6:arm64. 375s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 375s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 375s Selecting previously unselected package libsynctex2:arm64. 375s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 375s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 375s Selecting previously unselected package libtcl8.6:arm64. 375s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 375s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 375s Selecting previously unselected package libteckit0:arm64. 375s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 375s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 376s Selecting previously unselected package libtexlua53-5:arm64. 376s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 376s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 376s Selecting previously unselected package libjbig0:arm64. 376s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 376s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 376s Selecting previously unselected package libwebp7:arm64. 376s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 376s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 376s Selecting previously unselected package libtiff6:arm64. 376s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 376s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 376s Selecting previously unselected package libxft2:arm64. 376s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 376s Unpacking libxft2:arm64 (2.3.6-1) ... 376s Selecting previously unselected package libxss1:arm64. 376s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 376s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 376s Selecting previously unselected package libtk8.6:arm64. 376s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 376s Unpacking libtk8.6:arm64 (8.6.13-2) ... 376s Selecting previously unselected package libxt6:arm64. 376s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 376s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 376s Selecting previously unselected package libxmu6:arm64. 376s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 376s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 376s Selecting previously unselected package libxpm4:arm64. 376s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 376s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 376s Selecting previously unselected package libxaw7:arm64. 376s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 376s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 376s Selecting previously unselected package libxi6:arm64. 376s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 376s Unpacking libxi6:arm64 (2:1.8.1-1) ... 376s Selecting previously unselected package libzzip-0-13:arm64. 376s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 376s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 376s Selecting previously unselected package zip. 376s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 376s Unpacking zip (3.0-13) ... 376s Selecting previously unselected package unzip. 376s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 376s Unpacking unzip (6.0-28ubuntu3) ... 376s Selecting previously unselected package xdg-utils. 376s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 376s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 376s Selecting previously unselected package r-base-core. 377s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 377s Unpacking r-base-core (4.3.2-1build1) ... 377s Selecting previously unselected package r-cran-littler. 377s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 377s Unpacking r-cran-littler (0.3.19-1) ... 377s Selecting previously unselected package littler. 377s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 377s Unpacking littler (0.3.19-1) ... 377s Selecting previously unselected package node-bootstrap-sass. 377s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 377s Unpacking node-bootstrap-sass (3.4.3-2) ... 377s Selecting previously unselected package node-html5shiv. 377s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 377s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 377s Selecting previously unselected package node-normalize.css. 377s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 377s Unpacking node-normalize.css (8.0.1-5) ... 377s Selecting previously unselected package pandoc-data. 377s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 377s Unpacking pandoc-data (3.1.3-1) ... 377s Selecting previously unselected package pandoc. 377s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 377s Unpacking pandoc (3.1.3+ds-2) ... 378s Selecting previously unselected package pkgconf-bin. 378s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 378s Unpacking pkgconf-bin (1.8.1-2) ... 379s Selecting previously unselected package pkgconf:arm64. 379s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 379s Unpacking pkgconf:arm64 (1.8.1-2) ... 379s Selecting previously unselected package pkg-config:arm64. 379s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 379s Unpacking pkg-config:arm64 (1.8.1-2) ... 379s Selecting previously unselected package liblzma-dev:arm64. 379s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 379s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 379s Selecting previously unselected package r-base-dev. 379s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 379s Unpacking r-base-dev (4.3.2-1build1) ... 379s Selecting previously unselected package pkg-r-autopkgtest. 379s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 379s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 379s Selecting previously unselected package r-bioc-biocgenerics. 379s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 379s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 379s Selecting previously unselected package r-bioc-biobase. 379s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 379s Unpacking r-bioc-biobase (2.62.0-1) ... 379s Selecting previously unselected package r-bioc-s4vectors. 379s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 379s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 379s Selecting previously unselected package r-bioc-iranges. 379s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 379s Unpacking r-bioc-iranges (2.36.0-1) ... 379s Selecting previously unselected package r-cran-dbi. 379s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 379s Unpacking r-cran-dbi (1.2.2-1) ... 379s Selecting previously unselected package r-cran-bit. 379s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 379s Unpacking r-cran-bit (4.0.5-1) ... 379s Selecting previously unselected package r-cran-bit64. 379s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 379s Unpacking r-cran-bit64 (4.0.5-1) ... 379s Selecting previously unselected package r-cran-rlang. 379s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 379s Unpacking r-cran-rlang (1.1.3-1) ... 379s Selecting previously unselected package r-cran-cli. 379s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 379s Unpacking r-cran-cli (3.6.2-1) ... 379s Selecting previously unselected package r-cran-glue. 379s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 379s Unpacking r-cran-glue (1.7.0-1) ... 379s Selecting previously unselected package r-cran-lifecycle. 379s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 379s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 379s Selecting previously unselected package r-cran-vctrs. 379s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 379s Unpacking r-cran-vctrs (0.6.5-1) ... 379s Selecting previously unselected package r-cran-blob. 379s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 379s Unpacking r-cran-blob (1.2.4-1) ... 379s Selecting previously unselected package r-cran-fastmap. 380s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 380s Unpacking r-cran-fastmap (1.1.1-1) ... 380s Selecting previously unselected package r-cran-cachem. 380s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 380s Unpacking r-cran-cachem (1.0.8-1) ... 380s Selecting previously unselected package r-cran-memoise. 380s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 380s Unpacking r-cran-memoise (2.0.1-1) ... 380s Selecting previously unselected package r-cran-pkgconfig. 380s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 380s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 380s Selecting previously unselected package r-cran-plogr. 380s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 380s Unpacking r-cran-plogr (0.2.0-3build1) ... 380s Selecting previously unselected package r-cran-cpp11. 380s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 380s Unpacking r-cran-cpp11 (0.4.7-1) ... 380s Selecting previously unselected package r-cran-rsqlite. 380s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 380s Unpacking r-cran-rsqlite (2.3.4-1) ... 380s Selecting previously unselected package r-cran-curl. 380s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 380s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 380s Selecting previously unselected package r-cran-jsonlite. 380s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 380s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 380s Selecting previously unselected package r-cran-mime. 380s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 380s Unpacking r-cran-mime (0.12-1) ... 380s Selecting previously unselected package r-cran-sys. 380s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 380s Unpacking r-cran-sys (3.4.2-1) ... 380s Selecting previously unselected package r-cran-askpass. 380s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 380s Unpacking r-cran-askpass (1.2.0-1) ... 380s Selecting previously unselected package r-cran-openssl. 380s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 380s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 380s Selecting previously unselected package r-cran-r6. 380s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 380s Unpacking r-cran-r6 (2.5.1-1) ... 380s Selecting previously unselected package r-cran-httr. 380s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 380s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 380s Selecting previously unselected package r-cran-png. 380s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 380s Unpacking r-cran-png (0.1-8-1) ... 380s Selecting previously unselected package r-bioc-zlibbioc. 380s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 380s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 380s Selecting previously unselected package r-bioc-xvector. 380s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 380s Unpacking r-bioc-xvector (0.42.0-1) ... 381s Selecting previously unselected package r-cran-bitops. 381s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 381s Unpacking r-cran-bitops (1.0-7-1) ... 381s Selecting previously unselected package r-cran-rcurl. 381s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 381s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 381s Selecting previously unselected package r-bioc-genomeinfodbdata. 381s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 381s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 381s Selecting previously unselected package r-bioc-genomeinfodb. 381s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 381s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 381s Selecting previously unselected package r-cran-crayon. 381s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 381s Unpacking r-cran-crayon (1.5.2-1) ... 381s Selecting previously unselected package r-bioc-biostrings. 381s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 381s Selecting previously unselected package r-bioc-keggrest. 381s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 381s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 381s Selecting previously unselected package r-bioc-annotationdbi. 381s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 381s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 381s Selecting previously unselected package r-bioc-genomicranges. 381s Preparing to unpack .../189-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 381s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 381s Selecting previously unselected package r-cran-lazyeval. 381s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 381s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 381s Selecting previously unselected package r-bioc-annotationfilter. 381s Preparing to unpack .../191-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 381s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-generics. 381s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 381s Unpacking r-cran-generics (0.1.3-1) ... 381s Selecting previously unselected package r-cran-magrittr. 381s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_arm64.deb ... 381s Unpacking r-cran-magrittr (2.0.3-1) ... 381s Selecting previously unselected package r-cran-fansi. 381s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_arm64.deb ... 381s Unpacking r-cran-fansi (1.0.5-1) ... 381s Selecting previously unselected package r-cran-utf8. 381s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_arm64.deb ... 381s Unpacking r-cran-utf8 (1.2.4-1) ... 381s Selecting previously unselected package r-cran-pillar. 381s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 381s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-tibble. 382s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 382s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 382s Selecting previously unselected package r-cran-withr. 382s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 382s Unpacking r-cran-withr (2.5.0-1) ... 382s Selecting previously unselected package r-cran-tidyselect. 382s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 382s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-dplyr. 382s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_arm64.deb ... 382s Unpacking r-cran-dplyr (1.1.4-1) ... 382s Selecting previously unselected package r-cran-purrr. 382s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_arm64.deb ... 382s Unpacking r-cran-purrr (1.0.2-1) ... 382s Selecting previously unselected package r-cran-stringi. 382s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_arm64.deb ... 382s Unpacking r-cran-stringi (1.8.3-1) ... 382s Selecting previously unselected package r-cran-stringr. 382s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 382s Unpacking r-cran-stringr (1.5.1-1) ... 382s Selecting previously unselected package r-cran-tidyr. 382s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_arm64.deb ... 382s Unpacking r-cran-tidyr (1.3.1-1) ... 382s Selecting previously unselected package r-cran-dbplyr. 382s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 382s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-filelock. 382s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_arm64.deb ... 382s Unpacking r-cran-filelock (1.0.3-1) ... 382s Selecting previously unselected package r-bioc-biocfilecache. 382s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 382s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 382s Selecting previously unselected package r-cran-biocmanager. 382s Preparing to unpack .../208-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 382s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 382s Selecting previously unselected package r-bioc-biocversion. 382s Preparing to unpack .../209-r-bioc-biocversion_3.18.1-1_all.deb ... 382s Unpacking r-bioc-biocversion (3.18.1-1) ... 382s Selecting previously unselected package r-cran-rappdirs. 382s Preparing to unpack .../210-r-cran-rappdirs_0.3.3-1_arm64.deb ... 382s Unpacking r-cran-rappdirs (0.3.3-1) ... 382s Selecting previously unselected package r-cran-yaml. 382s Preparing to unpack .../211-r-cran-yaml_2.3.8-1_arm64.deb ... 382s Unpacking r-cran-yaml (2.3.8-1) ... 382s Selecting previously unselected package r-cran-pkgkitten. 382s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 382s Unpacking r-cran-pkgkitten (0.2.3-1) ... 382s Selecting previously unselected package r-cran-rcpp. 382s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_arm64.deb ... 382s Unpacking r-cran-rcpp (1.0.12-1) ... 382s Selecting previously unselected package r-cran-later. 383s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 383s Unpacking r-cran-later (1.3.2+dfsg-1) ... 383s Selecting previously unselected package r-cran-promises. 383s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 383s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 383s Selecting previously unselected package r-cran-httpuv. 383s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 383s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 383s Selecting previously unselected package r-cran-xtable. 383s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 383s Unpacking r-cran-xtable (1:1.8-4-2) ... 383s Selecting previously unselected package r-cran-base64enc. 383s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 383s Unpacking r-cran-base64enc (0.1-3-3) ... 383s Selecting previously unselected package r-cran-digest. 383s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 383s Unpacking r-cran-digest (0.6.34-1) ... 383s Selecting previously unselected package r-cran-ellipsis. 383s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 383s Unpacking r-cran-ellipsis (0.3.2-2) ... 383s Selecting previously unselected package r-cran-htmltools. 383s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 383s Unpacking r-cran-htmltools (0.5.7-1) ... 383s Selecting previously unselected package r-cran-fontawesome. 383s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 383s Unpacking r-cran-fontawesome (0.5.2-1) ... 383s Selecting previously unselected package r-cran-sourcetools. 383s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 383s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 383s Selecting previously unselected package r-cran-commonmark. 383s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_arm64.deb ... 383s Unpacking r-cran-commonmark (1.9.1-1) ... 383s Selecting previously unselected package r-cran-jquerylib. 383s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 383s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 383s Selecting previously unselected package r-cran-fs. 383s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 383s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 383s Selecting previously unselected package r-cran-sass. 383s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 383s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 383s Selecting previously unselected package r-cran-bslib. 383s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 383s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 383s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 383s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 383s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 383s Selecting previously unselected package r-cran-shiny. 384s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 384s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 384s Selecting previously unselected package r-cran-evaluate. 384s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 384s Unpacking r-cran-evaluate (0.23-1) ... 384s Selecting previously unselected package r-cran-xfun. 384s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 384s Unpacking r-cran-xfun (0.41+dfsg-1) ... 384s Selecting previously unselected package r-cran-highr. 384s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 384s Unpacking r-cran-highr (0.10+dfsg-1) ... 384s Selecting previously unselected package libjs-mathjax. 384s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 384s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 384s Selecting previously unselected package r-cran-knitr. 384s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 384s Unpacking r-cran-knitr (1.45+dfsg-1) ... 384s Selecting previously unselected package r-cran-tinytex. 384s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 384s Unpacking r-cran-tinytex (0.49-1) ... 385s Selecting previously unselected package libjs-modernizr. 385s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 385s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 385s Selecting previously unselected package r-cran-rmarkdown. 385s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 385s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 385s Selecting previously unselected package r-cran-htmlwidgets. 385s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 385s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 385s Selecting previously unselected package r-cran-crosstalk. 385s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 385s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 385s Selecting previously unselected package r-cran-dt. 385s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 385s Unpacking r-cran-dt (0.31+dfsg-1) ... 385s Selecting previously unselected package r-bioc-interactivedisplaybase. 385s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 385s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 385s Selecting previously unselected package r-bioc-annotationhub. 385s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 385s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 385s Selecting previously unselected package r-bioc-biocio. 385s Preparing to unpack .../244-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 385s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 385s Selecting previously unselected package r-cran-formatr. 385s Preparing to unpack .../245-r-cran-formatr_1.14-1_all.deb ... 385s Unpacking r-cran-formatr (1.14-1) ... 385s Selecting previously unselected package r-cran-lambda.r. 385s Preparing to unpack .../246-r-cran-lambda.r_1.2.4-2build1_all.deb ... 385s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 385s Selecting previously unselected package r-cran-futile.options. 385s Preparing to unpack .../247-r-cran-futile.options_1.0.1-3build1_all.deb ... 385s Unpacking r-cran-futile.options (1.0.1-3build1) ... 385s Selecting previously unselected package r-cran-futile.logger. 385s Preparing to unpack .../248-r-cran-futile.logger_1.4.3-4build1_all.deb ... 385s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 385s Selecting previously unselected package r-cran-snow. 385s Preparing to unpack .../249-r-cran-snow_1%3a0.4.4-2_all.deb ... 385s Unpacking r-cran-snow (1:0.4.4-2) ... 385s Selecting previously unselected package r-cran-codetools. 385s Preparing to unpack .../250-r-cran-codetools_0.2-19-1_all.deb ... 385s Unpacking r-cran-codetools (0.2-19-1) ... 385s Selecting previously unselected package r-cran-bh. 385s Preparing to unpack .../251-r-cran-bh_1.84.0-1_all.deb ... 385s Unpacking r-cran-bh (1.84.0-1) ... 385s Selecting previously unselected package r-bioc-biocparallel. 385s Preparing to unpack .../252-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 385s Unpacking r-bioc-biocparallel (1.36.0-1) ... 385s Selecting previously unselected package r-cran-bookdown. 386s Preparing to unpack .../253-r-cran-bookdown_0.37+dfsg-1_all.deb ... 386s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 386s Selecting previously unselected package tex-common. 386s Preparing to unpack .../254-tex-common_6.18_all.deb ... 386s Unpacking tex-common (6.18) ... 386s Selecting previously unselected package t1utils. 386s Preparing to unpack .../255-t1utils_1.41-4build2_arm64.deb ... 386s Unpacking t1utils (1.41-4build2) ... 386s Selecting previously unselected package texlive-binaries. 386s Preparing to unpack .../256-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 386s Unpacking texlive-binaries (2023.20230311.66589-9) ... 386s Selecting previously unselected package texlive-base. 386s Preparing to unpack .../257-texlive-base_2023.20240207-1_all.deb ... 386s Unpacking texlive-base (2023.20240207-1) ... 387s Selecting previously unselected package texlive-latex-base. 387s Preparing to unpack .../258-texlive-latex-base_2023.20240207-1_all.deb ... 387s Unpacking texlive-latex-base (2023.20240207-1) ... 387s Selecting previously unselected package texlive-bibtex-extra. 387s Preparing to unpack .../259-texlive-bibtex-extra_2023.20240207-1_all.deb ... 387s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 390s Selecting previously unselected package r-bioc-biocstyle. 390s Preparing to unpack .../260-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 390s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 390s Selecting previously unselected package r-cran-xml. 390s Preparing to unpack .../261-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 390s Unpacking r-cran-xml (3.99-0.16.1-1) ... 390s Selecting previously unselected package r-cran-hms. 390s Preparing to unpack .../262-r-cran-hms_1.1.3-1_all.deb ... 390s Unpacking r-cran-hms (1.1.3-1) ... 390s Selecting previously unselected package r-cran-prettyunits. 390s Preparing to unpack .../263-r-cran-prettyunits_1.2.0-1_all.deb ... 390s Unpacking r-cran-prettyunits (1.2.0-1) ... 390s Selecting previously unselected package r-cran-progress. 390s Preparing to unpack .../264-r-cran-progress_1.2.3-1_all.deb ... 390s Unpacking r-cran-progress (1.2.3-1) ... 390s Selecting previously unselected package r-cran-xml2. 390s Preparing to unpack .../265-r-cran-xml2_1.3.6-1_arm64.deb ... 390s Unpacking r-cran-xml2 (1.3.6-1) ... 390s Selecting previously unselected package r-bioc-biomart. 390s Preparing to unpack .../266-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 390s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 391s Selecting previously unselected package r-cran-lattice. 391s Preparing to unpack .../267-r-cran-lattice_0.22-5-1_arm64.deb ... 391s Unpacking r-cran-lattice (0.22-5-1) ... 391s Selecting previously unselected package r-cran-matrix. 391s Preparing to unpack .../268-r-cran-matrix_1.6-5-1_arm64.deb ... 391s Unpacking r-cran-matrix (1.6-5-1) ... 391s Selecting previously unselected package r-cran-matrixstats. 391s Preparing to unpack .../269-r-cran-matrixstats_1.2.0-1_arm64.deb ... 391s Unpacking r-cran-matrixstats (1.2.0-1) ... 391s Selecting previously unselected package r-bioc-matrixgenerics. 391s Preparing to unpack .../270-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 391s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 391s Selecting previously unselected package r-cran-abind. 391s Preparing to unpack .../271-r-cran-abind_1.4-5-2_all.deb ... 391s Unpacking r-cran-abind (1.4-5-2) ... 391s Selecting previously unselected package r-bioc-s4arrays. 391s Preparing to unpack .../272-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-sparsearray. 391s Preparing to unpack .../273-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 391s Selecting previously unselected package r-bioc-delayedarray. 391s Preparing to unpack .../274-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-rhtslib. 391s Preparing to unpack .../275-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 391s Selecting previously unselected package r-bioc-rsamtools. 391s Preparing to unpack .../276-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 391s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-summarizedexperiment. 391s Preparing to unpack .../277-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 391s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-genomicalignments. 391s Preparing to unpack .../278-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 391s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 391s Selecting previously unselected package r-cran-rjson. 391s Preparing to unpack .../279-r-cran-rjson_0.2.21-1_arm64.deb ... 391s Unpacking r-cran-rjson (0.2.21-1) ... 391s Selecting previously unselected package r-cran-restfulr. 391s Preparing to unpack .../280-r-cran-restfulr_0.0.15-1_arm64.deb ... 391s Unpacking r-cran-restfulr (0.0.15-1) ... 391s Selecting previously unselected package r-bioc-rtracklayer. 391s Preparing to unpack .../281-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 391s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 391s Selecting previously unselected package r-bioc-genomicfeatures. 391s Preparing to unpack .../282-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 391s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 391s Selecting previously unselected package r-bioc-protgenerics. 392s Preparing to unpack .../283-r-bioc-protgenerics_1.34.0-1_all.deb ... 392s Unpacking r-bioc-protgenerics (1.34.0-1) ... 392s Selecting previously unselected package r-bioc-ensembldb. 392s Preparing to unpack .../284-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 392s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 392s Selecting previously unselected package r-bioc-experimenthub. 392s Preparing to unpack .../285-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 392s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 392s Selecting previously unselected package r-bioc-singlecellexperiment. 392s Preparing to unpack .../286-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 392s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 392s Selecting previously unselected package r-bioc-scrnaseq. 392s Preparing to unpack .../287-r-bioc-scrnaseq_2.16.0+ds-1_all.deb ... 392s Unpacking r-bioc-scrnaseq (2.16.0+ds-1) ... 392s Selecting previously unselected package r-cran-brio. 392s Preparing to unpack .../288-r-cran-brio_1.1.4-1_arm64.deb ... 392s Unpacking r-cran-brio (1.1.4-1) ... 392s Selecting previously unselected package r-cran-ps. 392s Preparing to unpack .../289-r-cran-ps_1.7.6-1_arm64.deb ... 392s Unpacking r-cran-ps (1.7.6-1) ... 392s Selecting previously unselected package r-cran-processx. 392s Preparing to unpack .../290-r-cran-processx_3.8.3-1_arm64.deb ... 392s Unpacking r-cran-processx (3.8.3-1) ... 392s Selecting previously unselected package r-cran-callr. 392s Preparing to unpack .../291-r-cran-callr_3.7.3-2_all.deb ... 392s Unpacking r-cran-callr (3.7.3-2) ... 392s Selecting previously unselected package r-cran-desc. 392s Preparing to unpack .../292-r-cran-desc_1.4.3-1_all.deb ... 392s Unpacking r-cran-desc (1.4.3-1) ... 392s Selecting previously unselected package r-cran-diffobj. 392s Preparing to unpack .../293-r-cran-diffobj_0.3.5-1_arm64.deb ... 392s Unpacking r-cran-diffobj (0.3.5-1) ... 392s Selecting previously unselected package r-cran-pkgbuild. 392s Preparing to unpack .../294-r-cran-pkgbuild_1.4.3-1_all.deb ... 392s Unpacking r-cran-pkgbuild (1.4.3-1) ... 392s Selecting previously unselected package r-cran-rprojroot. 392s Preparing to unpack .../295-r-cran-rprojroot_2.0.4-1_all.deb ... 392s Unpacking r-cran-rprojroot (2.0.4-1) ... 392s Selecting previously unselected package r-cran-pkgload. 392s Preparing to unpack .../296-r-cran-pkgload_1.3.4-1_all.deb ... 392s Unpacking r-cran-pkgload (1.3.4-1) ... 392s Selecting previously unselected 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texlive-binaries (2023.20230311.66589-9) ... 397s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 397s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 397s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 397s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 397s Setting up r-cran-lazyeval (0.2.2-1build1) ... 397s Setting up r-cran-commonmark (1.9.1-1) ... 397s Setting up r-cran-r6 (2.5.1-1) ... 397s Setting up r-cran-pkgkitten (0.2.3-1) ... 397s Setting up texlive-base (2023.20240207-1) ... 398s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 398s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 398s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 399s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 399s Setting up r-cran-magrittr (2.0.3-1) ... 399s Setting up r-cran-rappdirs (0.3.3-1) ... 399s Setting up r-cran-filelock (1.0.3-1) ... 399s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 399s Setting up r-cran-littler (0.3.19-1) ... 399s Setting up r-cran-bh (1.84.0-1) ... 399s Setting up r-cran-fs (1.6.3+dfsg-1) ... 399s Setting up r-cran-rcpp (1.0.12-1) ... 399s Setting up r-cran-curl (5.2.0+dfsg-1) ... 399s Setting up r-cran-codetools (0.2-19-1) ... 399s Setting up r-cran-brio (1.1.4-1) ... 399s Setting up r-cran-diffobj (0.3.5-1) ... 399s Setting up r-bioc-biocgenerics (0.48.1-2) ... 399s Setting up r-cran-rlang (1.1.3-1) ... 399s Setting up r-cran-matrixstats (1.2.0-1) ... 399s Setting up littler (0.3.19-1) ... 399s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 399s Setting up r-cran-xfun (0.41+dfsg-1) ... 399s Setting up r-cran-sys (3.4.2-1) ... 399s Setting up r-cran-plogr (0.2.0-3build1) ... 399s Setting up 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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 399s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 399s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 399s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 399s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 399s Setting up r-cran-bitops (1.0-7-1) ... 399s Setting up r-bioc-biocversion (3.18.1-1) ... 399s Setting up r-cran-rprojroot (2.0.4-1) ... 399s Setting up r-cran-bit64 (4.0.5-1) ... 399s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 399s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 399s Setting up r-cran-askpass (1.2.0-1) ... 399s Setting up r-cran-fastmap (1.1.1-1) ... 399s Setting up r-cran-png (0.1-8-1) ... 399s Setting up r-bioc-biobase (2.62.0-1) ... 399s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 399s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 399s Setting up r-cran-utf8 (1.2.4-1) ... 399s Setting up r-cran-stringi (1.8.3-1) ... 399s Setting up texlive-latex-base (2023.20240207-1) ... 399s Setting up r-cran-cpp11 (0.4.7-1) ... 399s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 399s Setting up r-cran-futile.logger (1.4.3-4build1) ... 399s Setting up r-cran-later (1.3.2+dfsg-1) ... 399s Setting up r-cran-matrix (1.6-5-1) ... 399s Setting up r-cran-tinytex (0.49-1) ... 399s Setting up r-cran-knitr (1.45+dfsg-1) ... 399s Setting up g++ (4:13.2.0-7ubuntu1) ... 399s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 399s Setting up r-cran-cachem (1.0.8-1) ... 399s Setting up build-essential (12.10ubuntu1) ... 399s Setting up r-bioc-iranges (2.36.0-1) ... 399s Setting up r-cran-rjson (0.2.21-1) ... 399s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 399s Setting up r-cran-restfulr (0.0.15-1) ... 399s Setting up r-cran-vctrs (0.6.5-1) ... 399s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 399s Setting up r-cran-ellipsis (0.3.2-2) ... 399s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 399s Setting up r-base-dev (4.3.2-1build1) ... 399s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 399s Setting up r-cran-stringr (1.5.1-1) ... 399s Setting up r-bioc-biocparallel (1.36.0-1) ... 399s Setting up r-cran-callr (3.7.3-2) ... 399s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 399s Setting up r-cran-desc (1.4.3-1) ... 399s Setting up r-cran-xml2 (1.3.6-1) ... 399s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 399s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 399s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 399s Setting up texlive-bibtex-extra (2023.20240207-1) ... 399s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 399s Setting up r-cran-httr (1.4.7+dfsg-1) ... 399s Setting up r-cran-hms (1.1.3-1) ... 399s Setting up r-cran-memoise (2.0.1-1) ... 399s Setting up r-cran-promises (1.2.1+dfsg-1) ... 399s Setting up r-cran-purrr (1.0.2-1) ... 399s Setting up r-cran-blob (1.2.4-1) ... 399s Setting up r-cran-htmltools (0.5.7-1) ... 399s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 399s Setting up r-bioc-xvector (0.42.0-1) ... 399s Setting up r-cran-pkgbuild (1.4.3-1) ... 399s Setting up r-cran-sass (0.4.8+dfsg-1) ... 399s Setting up r-cran-dplyr (1.1.4-1) ... 399s Setting up r-cran-rsqlite (2.3.4-1) ... 399s Setting up r-cran-progress (1.2.3-1) ... 399s Setting up r-cran-pkgload (1.3.4-1) ... 399s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 399s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 399s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 399s Setting up r-cran-rematch2 (2.1.2-2build1) ... 399s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 399s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 399s Setting up r-cran-fontawesome (0.5.2-1) ... 399s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 399s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 399s Setting up r-cran-waldo (0.5.2-1build1) ... 399s Setting up r-cran-tidyr (1.3.1-1) ... 399s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 399s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 399s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 399s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 399s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 399s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 399s Setting up r-bioc-annotationdbi (1.64.1-1) ... 399s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 399s Setting up r-cran-testthat (3.2.1-1) ... 399s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 399s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 399s Setting up r-bioc-genomicalignments (1.38.2-1) ... 399s Setting up r-cran-bookdown (0.37+dfsg-1) ... 399s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 399s Setting up r-bioc-rtracklayer (1.62.0-1) ... 399s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 399s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 399s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 399s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 399s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 399s Setting up r-cran-dt (0.31+dfsg-1) ... 399s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 399s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 399s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 399s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 399s Setting up autopkgtest-satdep (0) ... 399s Processing triggers for man-db (2.12.0-3) ... 400s Processing triggers for install-info (7.1-3) ... 401s Processing triggers for libc-bin (2.39-0ubuntu2) ... 401s Processing triggers for tex-common (6.18) ... 401s Running updmap-sys. This may take some time... done. 401s Running mktexlsr /var/lib/texmf ... done. 401s Building format(s) --all. 437s This may take some time... done. 451s (Reading database ... 126090 files and directories currently installed.) 451s Removing autopkgtest-satdep (0) ... 452s autopkgtest [17:51:34]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 452s autopkgtest [17:51:34]: test pkg-r-autopkgtest: [----------------------- 452s Test: Try to load the R library scRNAseq 453s 453s R version 4.3.2 (2023-10-31) -- "Eye Holes" 453s Copyright (C) 2023 The R Foundation for Statistical Computing 453s Platform: aarch64-unknown-linux-gnu (64-bit) 453s 453s R is free software and comes with ABSOLUTELY NO WARRANTY. 453s You are welcome to redistribute it under certain conditions. 453s Type 'license()' or 'licence()' for distribution details. 453s 453s R is a collaborative project with many contributors. 453s Type 'contributors()' for more information and 453s 'citation()' on how to cite R or R packages in publications. 453s 453s Type 'demo()' for some demos, 'help()' for on-line help, or 453s 'help.start()' for an HTML browser interface to help. 453s Type 'q()' to quit R. 453s 453s > library('scRNAseq') 453s Loading required package: SingleCellExperiment 453s Loading required package: SummarizedExperiment 453s Loading required package: MatrixGenerics 453s Loading required package: matrixStats 453s 453s Attaching package: ‘MatrixGenerics’ 453s 453s The following objects are masked from ‘package:matrixStats’: 453s 453s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 453s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 453s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 453s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 453s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 453s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 453s colWeightedMeans, colWeightedMedians, colWeightedSds, 453s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 453s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 453s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 453s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 453s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 453s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 453s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 453s rowWeightedSds, rowWeightedVars 453s 453s Loading required package: GenomicRanges 453s Loading required package: stats4 453s Loading required package: BiocGenerics 453s 453s Attaching package: ‘BiocGenerics’ 453s 453s The following objects are masked from ‘package:stats’: 453s 453s IQR, mad, sd, var, xtabs 453s 453s The following objects are masked from ‘package:base’: 453s 453s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 453s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 453s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 453s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 453s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 453s table, tapply, union, unique, unsplit, which.max, which.min 453s 453s Loading required package: S4Vectors 454s 454s Attaching package: ‘S4Vectors’ 454s 454s The following object is masked from ‘package:utils’: 454s 454s findMatches 454s 454s The following objects are masked from ‘package:base’: 454s 454s expand.grid, I, unname 454s 454s Loading required package: IRanges 455s Loading required package: GenomeInfoDb 456s Loading required package: Biobase 456s Welcome to Bioconductor 456s 456s Vignettes contain introductory material; view with 456s 'browseVignettes()'. To cite Bioconductor, see 456s 'citation("Biobase")', and for packages 'citation("pkgname")'. 456s 456s 456s Attaching package: ‘Biobase’ 456s 456s The following object is masked from ‘package:MatrixGenerics’: 456s 456s rowMedians 456s 456s The following objects are masked from ‘package:matrixStats’: 456s 456s anyMissing, rowMedians 456s 465s > 465s > 466s Other tests are currently unsupported! 466s They will be progressively added. 466s autopkgtest [17:51:48]: test pkg-r-autopkgtest: -----------------------] 467s autopkgtest [17:51:49]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 467s pkg-r-autopkgtest PASS 467s autopkgtest [17:51:49]: @@@@@@@@@@@@@@@@@@@@ summary 467s pkg-r-autopkgtest PASS 540s Creating nova instance adt-noble-arm64-r-bioc-scrnaseq-20240316-174402-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...