0s autopkgtest [17:43:58]: starting date and time: 2024-03-16 17:43:58+0000 0s autopkgtest [17:43:58]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:43:58]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ou9tydlr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-scater --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-scater-20240316-174357-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 73s autopkgtest [17:45:11]: testbed dpkg architecture: arm64 73s autopkgtest [17:45:11]: testbed apt version: 2.7.12 73s autopkgtest [17:45:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 74s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 74s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 74s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 74s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 74s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 74s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 74s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 74s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 75s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 75s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 75s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 76s Fetched 9060 kB in 2s (5211 kB/s) 77s Reading package lists... 80s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 81s The following packages will be REMOVED: 81s libglib2.0-0 libssl3 81s The following NEW packages will be installed: 81s libglib2.0-0t64 libssl3t64 xdg-user-dirs 81s The following packages have been kept back: 81s curl 81s The following packages will be upgraded: 81s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 81s ubuntu-minimal ubuntu-standard 81s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 81s Need to get 4613 kB of archives. 81s After this operation, 211 kB of additional disk space will be used. 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 82s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 82s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 82s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 82s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 82s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 82s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 82s Fetched 4613 kB in 1s (5367 kB/s) 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 83s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 83s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 83s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 83s udisks2 depends on libglib2.0-0 (>= 2.77.0). 83s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 83s python3-gi depends on libglib2.0-0 (>= 2.77.0). 83s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 83s netplan.io depends on libglib2.0-0 (>= 2.70.0). 83s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 83s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 83s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 83s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 83s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 83s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 83s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 83s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 83s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 83s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 83s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 83s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 83s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 83s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 83s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 83s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 83s fwupd depends on libglib2.0-0 (>= 2.79.0). 83s bolt depends on libglib2.0-0 (>= 2.56.0). 83s 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 83s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 83s Selecting previously unselected package libglib2.0-0t64:arm64. 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 83s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 83s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 83s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 83s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 83s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 83s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 83s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 83s wget depends on libssl3 (>= 3.0.0). 83s u-boot-tools depends on libssl3 (>= 3.0.0). 83s tnftp depends on libssl3 (>= 3.0.0). 83s tcpdump depends on libssl3 (>= 3.0.0). 83s systemd-resolved depends on libssl3 (>= 3.0.0). 83s systemd depends on libssl3 (>= 3.0.0). 83s sudo depends on libssl3 (>= 3.0.0). 83s sbsigntool depends on libssl3 (>= 3.0.0). 83s rsync depends on libssl3 (>= 3.0.0). 83s python3-cryptography depends on libssl3 (>= 3.0.0). 83s openssh-server depends on libssl3 (>= 3.0.10). 83s openssh-client depends on libssl3 (>= 3.0.10). 83s mtd-utils depends on libssl3 (>= 3.0.0). 83s mokutil depends on libssl3 (>= 3.0.0). 83s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 83s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 83s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 83s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 83s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 83s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 83s libnvme1 depends on libssl3 (>= 3.0.0). 83s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 83s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 83s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 83s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 83s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 83s kmod depends on libssl3 (>= 3.0.0). 83s dhcpcd-base depends on libssl3 (>= 3.0.0). 83s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 83s 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 83s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 83s Selecting previously unselected package libssl3t64:arm64. 83s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 83s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 83s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 83s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 83s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 83s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 83s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 83s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 83s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 83s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 83s Unpacking ubuntu-minimal (1.536) over (1.535) ... 83s Selecting previously unselected package xdg-user-dirs. 83s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 83s Unpacking xdg-user-dirs (0.18-1) ... 83s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 83s Unpacking ubuntu-standard (1.536) over (1.535) ... 84s Setting up ubuntu-minimal (1.536) ... 84s Setting up xdg-user-dirs (0.18-1) ... 84s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 84s Setting up libtirpc-common (1.3.4+ds-1.1) ... 84s Setting up ubuntu-standard (1.536) ... 84s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 84s No schema files found: doing nothing. 84s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 84s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 84s Setting up openssl (3.0.13-0ubuntu1) ... 84s Setting up readline-common (8.2-3.1) ... 84s Processing triggers for man-db (2.12.0-3) ... 84s Processing triggers for install-info (7.1-3) ... 85s Processing triggers for libc-bin (2.39-0ubuntu2) ... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 88s sh: Attempting to set up Debian/Ubuntu apt sources automatically 88s sh: Distribution appears to be Ubuntu 89s Reading package lists... 89s Building dependency tree... 89s Reading state information... 89s eatmydata is already the newest version (131-1). 89s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s dbus is already the newest version (1.14.10-4ubuntu1). 90s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s rng-tools-debian is already the newest version (2.4). 91s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 91s Reading package lists... 92s Building dependency tree... 92s Reading state information... 92s The following packages will be REMOVED: 92s cloud-init* python3-configobj* python3-debconf* 93s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 93s After this operation, 3252 kB disk space will be freed. 93s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 93s Removing cloud-init (24.1.1-0ubuntu1) ... 93s Removing python3-configobj (5.0.8-3) ... 93s Removing python3-debconf (1.5.86) ... 94s Processing triggers for man-db (2.12.0-3) ... 94s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 94s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 95s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 95s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 95s invoke-rc.d: policy-rc.d denied execution of try-restart. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s linux-generic is already the newest version (6.8.0-11.11+1). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 97s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 97s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 101s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s autopkgtest [17:45:41]: rebooting testbed after setup commands that affected boot 333s autopkgtest [17:49:31]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 336s autopkgtest [17:49:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-scater 339s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scater 1.30.1+ds-2 (dsc) [2503 B] 339s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scater 1.30.1+ds-2 (tar) [238 kB] 339s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-scater 1.30.1+ds-2 (diff) [3584 B] 339s gpgv: Signature made Tue Dec 19 08:23:26 2023 UTC 339s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 339s gpgv: issuer "tille@debian.org" 339s gpgv: Can't check signature: No public key 339s dpkg-source: warning: cannot verify inline signature for ./r-bioc-scater_1.30.1+ds-2.dsc: no acceptable signature found 339s autopkgtest [17:49:37]: testing package r-bioc-scater version 1.30.1+ds-2 340s autopkgtest [17:49:38]: build not needed 341s autopkgtest [17:49:39]: test pkg-r-autopkgtest: preparing testbed 342s Reading package lists... 342s Building dependency tree... 342s Reading state information... 343s Starting pkgProblemResolver with broken count: 0 343s Starting 2 pkgProblemResolver with broken count: 0 343s Done 343s The following additional packages will be installed: 343s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 343s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 343s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 343s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 343s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 343s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 343s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 343s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 343s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 343s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 343s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 343s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 343s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 343s libjs-highlight.js libjs-jquery libjs-jquery-datatables 343s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 343s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 343s libjs-popper.js libjs-prettify libjs-sifter.js 343s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 343s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 343s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 343s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 343s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 343s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 343s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 343s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 343s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 343s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 343s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 343s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 343s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 343s r-bioc-basilisk r-bioc-basilisk.utils r-bioc-beachmat r-bioc-biobase 343s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors 343s r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion 343s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 343s r-bioc-delayedmatrixstats r-bioc-densvis r-bioc-dir.expiry r-bioc-ensembldb 343s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 343s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 343s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 343s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 343s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 343s r-bioc-scater r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment 343s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 343s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-assertthat 343s r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager r-cran-bit 343s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 343s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cli 343s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cowplot 343s r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi 343s r-cran-dbplyr r-cran-deoptimr r-cran-desc r-cran-diffobj r-cran-digest 343s r-cran-dplyr r-cran-dqrng r-cran-dt r-cran-ellipsis r-cran-evaluate 343s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fnn 343s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 343s r-cran-futile.options r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 343s r-cran-ggrastr r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable 343s r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 343s r-cran-httpuv r-cran-httr r-cran-irlba r-cran-isoband r-cran-jquerylib 343s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 343s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 343s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 343s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 343s r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 343s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 343s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 343s r-cran-purrr r-cran-r6 r-cran-ragg r-cran-rappdirs r-cran-rcolorbrewer 343s r-cran-rcpp r-cran-rcppannoy r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppml 343s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rematch2 343s r-cran-restfulr r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 343s r-cran-robustbase r-cran-rprojroot r-cran-rsqlite r-cran-rsvd r-cran-rtsne 343s r-cran-sass r-cran-scales r-cran-scattermore r-cran-shiny r-cran-sitmo 343s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 343s r-cran-systemfonts r-cran-testthat r-cran-textshaping r-cran-tibble 343s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot 343s r-cran-vctrs r-cran-vipor r-cran-viridis r-cran-viridislite r-cran-waldo 343s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 343s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 343s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 343s zlib1g-dev 343s Suggested packages: 343s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 343s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 343s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 343s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 343s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 343s libboost-context1.83-dev libboost-contract1.83-dev 343s libboost-coroutine1.83-dev libboost-date-time1.83-dev 343s libboost-exception1.83-dev libboost-fiber1.83-dev 343s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 343s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 343s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 343s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 343s libboost-numpy1.83-dev libboost-program-options1.83-dev 343s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 343s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 343s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 343s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 343s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 343s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 343s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 343s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 343s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 343s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 343s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 343s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 343s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph 343s r-bioc-variantannotation r-cran-rcmdcheck r-bioc-hdf5array r-bioc-all 343s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 343s r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-data.table 343s r-bioc-residualmatrix r-cran-mockery r-cran-webmockr r-bioc-bsgenome 343s r-bioc-genefilter r-cran-lobstr r-cran-profmem r-bioc-ggbio r-bioc-gviz 343s r-cran-r.utils r-bioc-edger r-cran-markdown r-bioc-dexseq r-bioc-limma 343s r-bioc-scran r-cran-bench r-bioc-rhdf5 r-cran-covr r-cran-roxygen2 r-cran-ff 343s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 343s r-cran-shinyjs r-cran-jpeg r-cran-rstudioapi r-cran-rmysql r-cran-maps 343s r-cran-sf r-cran-plyr r-cran-readr r-cran-uuid r-cran-lubridate 343s r-cran-magick r-cran-getopt r-cran-formattable r-cran-nanotime 343s r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr 343s r-cran-inline r-cran-rcpparmadillo r-cran-devtools r-cran-tinytest 343s r-cran-rmpi r-cran-rlecuyer r-cran-rspectra r-cran-plm r-cran-zoo debhelper 343s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 343s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 343s Recommended packages: 343s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 343s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-rstudioapi 343s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 343s r-cran-covr r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-whoami 343s r-cran-forcats r-cran-gridgraphics r-cran-magick r-cran-maps 343s r-cran-patchwork r-cran-vdiffr r-cran-venndiagram r-cran-bench r-cran-decor 343s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-gh 343s r-cran-broom r-cran-rmysql r-cran-mvtnorm libpcg-cpp-dev r-cran-future w3m 343s | www-browser r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-hexbin 343s r-cran-hmisc r-cran-mapproj r-cran-multcomp r-cran-profvis r-cran-quantreg 343s r-cran-rpart r-cran-sf r-cran-svglite r-cran-devtools r-cran-readr 343s r-cran-markdown r-cran-jpeg r-cran-r.rsp r-cran-gridsvg r-cran-rgl 343s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 343s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 343s r-cran-webfakes r-cran-pingr r-cran-tinytest r-cran-runit r-cran-usethis 343s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-plyr 343s r-cran-dichromat r-cran-data.table r-cran-formattable r-cran-pkgdown 343s r-cran-zeallot r-cran-vioplot r-cran-renv lmodern dvisvgm 343s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 343s x11-xserver-utils 344s The following NEW packages will be installed: 344s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 344s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 344s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 344s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 344s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 344s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 344s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 344s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 344s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 344s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 344s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 344s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 344s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 344s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 344s libjs-highlight.js libjs-jquery libjs-jquery-datatables 344s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 344s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 344s libjs-popper.js libjs-prettify libjs-sifter.js 344s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 344s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 344s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 344s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 344s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 344s libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev 344s libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 344s libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 344s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 344s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 344s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 344s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 344s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 344s r-bioc-basilisk r-bioc-basilisk.utils r-bioc-beachmat r-bioc-biobase 344s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocneighbors 344s r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle r-bioc-biocversion 344s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 344s r-bioc-delayedmatrixstats r-bioc-densvis r-bioc-dir.expiry r-bioc-ensembldb 344s r-bioc-experimenthub r-bioc-genomeinfodb r-bioc-genomeinfodbdata 344s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 344s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest 344s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 344s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 344s r-bioc-scater r-bioc-scrnaseq r-bioc-scuttle r-bioc-singlecellexperiment 344s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 344s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-assertthat 344s r-cran-base64enc r-cran-beeswarm r-cran-bh r-cran-biocmanager r-cran-bit 344s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 344s r-cran-bslib r-cran-cachem r-cran-cairo r-cran-callr r-cran-cli 344s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cowplot 344s r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi 344s r-cran-dbplyr r-cran-deoptimr r-cran-desc r-cran-diffobj r-cran-digest 344s r-cran-dplyr r-cran-dqrng r-cran-dt r-cran-ellipsis r-cran-evaluate 344s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fnn 344s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 344s r-cran-futile.options r-cran-generics r-cran-ggbeeswarm r-cran-ggplot2 344s r-cran-ggrastr r-cran-ggrepel r-cran-glue r-cran-gridextra r-cran-gtable 344s r-cran-here r-cran-highr r-cran-hms r-cran-htmltools r-cran-htmlwidgets 344s r-cran-httpuv r-cran-httr r-cran-irlba r-cran-isoband r-cran-jquerylib 344s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 344s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 344s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 344s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl 344s r-cran-pheatmap r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 344s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 344s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 344s r-cran-purrr r-cran-r6 r-cran-ragg r-cran-rappdirs r-cran-rcolorbrewer 344s r-cran-rcpp r-cran-rcppannoy r-cran-rcppeigen r-cran-rcpphnsw r-cran-rcppml 344s r-cran-rcppprogress r-cran-rcpptoml r-cran-rcurl r-cran-rematch2 344s r-cran-restfulr r-cran-reticulate r-cran-rjson r-cran-rlang r-cran-rmarkdown 344s r-cran-robustbase r-cran-rprojroot r-cran-rsqlite r-cran-rsvd r-cran-rtsne 344s r-cran-sass r-cran-scales r-cran-scattermore r-cran-shiny r-cran-sitmo 344s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 344s r-cran-systemfonts r-cran-testthat r-cran-textshaping r-cran-tibble 344s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-uwot 344s r-cran-vctrs r-cran-vipor r-cran-viridis r-cran-viridislite r-cran-waldo 344s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 344s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 344s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 344s zlib1g-dev 344s 0 upgraded, 359 newly installed, 0 to remove and 0 not upgraded. 344s Need to get 473 MB/473 MB of archives. 344s After this operation, 1445 MB of additional disk space will be used. 344s Get:1 /tmp/autopkgtest.0ktyhl/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [808 B] 344s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 344s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 344s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 344s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 344s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 344s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 344s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 344s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 344s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 344s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 345s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 345s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 345s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 345s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 345s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 345s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 345s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 345s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 345s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 345s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 345s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 345s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 345s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 345s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 345s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 345s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 345s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 345s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 346s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 346s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 346s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 346s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 346s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 346s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 346s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 346s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 346s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 346s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 346s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 346s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 346s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 346s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 346s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 346s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 346s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 346s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 346s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 346s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 346s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 346s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 346s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 346s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 346s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 346s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 346s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 346s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 346s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 347s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 347s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 347s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 347s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 347s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 347s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 347s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 347s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 347s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 347s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 347s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 347s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 347s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 347s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 347s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 347s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 347s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 347s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 347s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 347s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 347s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 347s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 347s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 347s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 347s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 347s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 347s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 347s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 347s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 347s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 347s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 347s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 347s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 347s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 347s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 347s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 347s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 347s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 347s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 347s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 347s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 347s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 347s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 347s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 347s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 348s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 348s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 348s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 348s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 348s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 348s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 348s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 348s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 348s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 348s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 348s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 348s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 348s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 348s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 348s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 348s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 348s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 348s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 348s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 348s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 348s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 348s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 348s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 348s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 348s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 348s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 348s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 348s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 348s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 348s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 348s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 348s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 348s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 348s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 348s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 349s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 349s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 349s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 349s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 349s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 349s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 349s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 350s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 350s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 350s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 350s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 350s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 350s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 350s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 350s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 350s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 350s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 350s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 350s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 350s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 350s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 350s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 351s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 351s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 351s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 351s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 351s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 351s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 351s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 351s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 351s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 351s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 351s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 351s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 351s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 351s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 351s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 351s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 351s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 351s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 351s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 351s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 351s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 351s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 351s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 351s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 351s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 351s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 352s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 352s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 352s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 352s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 352s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 352s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 352s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 352s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 352s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 352s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 352s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 352s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 352s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 352s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 352s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 352s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 352s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 353s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 353s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 353s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 353s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 353s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 353s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 353s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 353s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 353s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 353s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 353s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 353s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 353s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 353s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 353s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 353s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 353s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 353s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 353s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 353s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 353s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 353s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 353s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 353s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 353s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 353s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 353s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 354s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 354s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 354s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 354s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 354s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 354s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 354s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 354s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 354s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 354s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 354s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 354s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 354s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 354s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 354s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 354s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 354s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 354s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpptoml arm64 0.2.2+dfsg-1 [106 kB] 354s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 354s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-here all 1.0.1-2 [50.3 kB] 354s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reticulate arm64 1.35.0+dfsg-1 [1183 kB] 354s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dir.expiry all 1.10.0+ds-1 [30.5 kB] 354s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-basilisk.utils all 1.14.1+ds-1 [74.6 kB] 354s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-basilisk arm64 1.14.3+ds-1 [93.5 kB] 354s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 354s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 354s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 354s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 354s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 354s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 354s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 354s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 354s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 354s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 354s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 354s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 354s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 355s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 355s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 355s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 355s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpphnsw arm64 0.5.0+ds-1 [168 kB] 355s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocneighbors arm64 1.20.2+ds-1 [588 kB] 355s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scaledmatrix all 1.10.0+dfsg-1 [320 kB] 355s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-irlba arm64 2.3.5.1-2 [293 kB] 355s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] 355s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocsingular arm64 1.18.0+ds-1 [350 kB] 355s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 355s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 355s Get:279 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 355s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 355s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 356s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 356s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 359s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 359s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 359s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 359s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 359s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 359s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 359s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 359s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 359s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 359s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-assertthat all 0.2.1-2build1 [56.5 kB] 359s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rtsne arm64 0.17-1 [105 kB] 359s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-densvis arm64 1.12.1+dfsg-1 [84.2 kB] 359s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 359s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 359s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 359s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 359s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 359s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 359s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 359s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 359s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 359s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 360s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 360s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 360s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scuttle arm64 1.12.0+dfsg-1 [423 kB] 360s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 360s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 361s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 361s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 361s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 361s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 362s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 362s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 362s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 362s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 362s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 362s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 362s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 362s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-beeswarm arm64 0.4.0-1 [82.0 kB] 362s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vipor all 0.4.7-1 [4624 kB] 362s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggbeeswarm all 0.7.2-1 [1732 kB] 362s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 362s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 363s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 363s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppml arm64 0.3.7-2 [173 kB] 363s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fnn arm64 1.1.4-1 [121 kB] 363s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppannoy arm64 0.0.22-1 [231 kB] 363s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppprogress all 0.4.2-2build1 [22.0 kB] 363s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sitmo arm64 2.0.2-1 [129 kB] 363s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dqrng arm64 0.3.2+dfsg-1 [157 kB] 363s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-uwot arm64 0.1.16-2 [596 kB] 363s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pheatmap all 1.0.12-2build1 [78.2 kB] 363s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggrepel arm64 0.9.5-1 [250 kB] 363s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cairo arm64 1.6-2-1 [89.0 kB] 363s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-systemfonts arm64 1.0.5-1 [218 kB] 363s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-textshaping arm64 0.3.7-2 [91.8 kB] 363s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ragg arm64 1.2.7-1 [385 kB] 363s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggrastr all 1.0.2-1 [2566 kB] 363s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scater all 1.30.1+ds-2 [459 kB] 363s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scrnaseq all 2.16.0+ds-1 [287 kB] 363s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 363s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 363s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 363s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 363s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cowplot all 1.1.3+dfsg-1 [614 kB] 363s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deoptimr all 1.1-3-1 [74.4 kB] 363s Get:350 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 363s Get:351 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 363s Get:352 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 363s Get:353 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 363s Get:354 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 363s Get:355 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 363s Get:356 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-robustbase arm64 0.99-2-1 [3020 kB] 363s Get:357 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scattermore arm64 1.2-1 [329 kB] 363s Get:358 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 363s Get:359 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 365s Preconfiguring packages ... 365s Fetched 473 MB in 19s (24.2 MB/s) 365s Selecting previously unselected package libc-dev-bin. 365s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 365s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 365s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 365s Selecting previously unselected package linux-libc-dev:arm64. 365s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 365s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 365s Selecting previously unselected package libcrypt-dev:arm64. 365s Preparing to unpack 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package libjs-lunr. 375s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 375s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 375s Selecting previously unselected package libjs-prettify. 375s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 375s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 375s Selecting previously unselected package libkpathsea6:arm64. 375s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 375s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 375s Selecting previously unselected package liblapack3:arm64. 375s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 375s Unpacking liblapack3:arm64 (3.12.0-3) ... 375s Selecting previously unselected package liblapack-dev:arm64. 375s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 375s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 375s Selecting previously unselected package liblerc4:arm64. 375s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 375s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 375s Selecting previously unselected package liblua5.4-0:arm64. 375s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 375s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 375s Selecting previously unselected package libncurses-dev:arm64. 375s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 375s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 375s Selecting previously unselected package libthai-data. 375s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 375s Unpacking libthai-data (0.1.29-2) ... 375s Selecting previously unselected package libthai0:arm64. 375s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 375s Unpacking libthai0:arm64 (0.1.29-2) ... 375s Selecting previously unselected package libpango-1.0-0:arm64. 375s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangoft2-1.0-0:arm64. 375s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpangocairo-1.0-0:arm64. 375s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 375s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 375s Selecting previously unselected package libpaper1:arm64. 375s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 375s Unpacking libpaper1:arm64 (1.1.29) ... 375s Selecting previously unselected package libpaper-utils. 375s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 375s Unpacking libpaper-utils (1.1.29) ... 375s Selecting previously unselected package libpcre2-16-0:arm64. 375s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 375s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 376s Selecting previously unselected package libpcre2-32-0:arm64. 376s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 376s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 376s Selecting previously unselected package libpcre2-posix3:arm64. 376s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 376s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 376s Selecting previously unselected package libpcre2-dev:arm64. 376s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 376s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 376s Selecting previously unselected package libpkgconf3:arm64. 376s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 376s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 376s Selecting previously unselected package zlib1g-dev:arm64. 376s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 376s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 376s Selecting previously unselected package libpng-dev:arm64. 376s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 376s Unpacking libpng-dev:arm64 (1.6.43-1) ... 376s Selecting previously unselected package libpotrace0:arm64. 376s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 376s Unpacking libpotrace0:arm64 (1.16-2) ... 376s Selecting previously unselected package libptexenc1:arm64. 376s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 376s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 376s Selecting previously unselected package libreadline-dev:arm64. 376s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 376s Unpacking libreadline-dev:arm64 (8.2-3) ... 376s Selecting previously unselected package libsharpyuv0:arm64. 376s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 376s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 376s Selecting previously unselected package libsm6:arm64. 376s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 376s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 376s Selecting previously unselected package libsynctex2:arm64. 376s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 376s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 376s Selecting previously unselected package libtcl8.6:arm64. 376s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 376s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 376s Selecting previously unselected package libteckit0:arm64. 376s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 376s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 376s Selecting previously unselected package libtexlua53-5:arm64. 376s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 376s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 376s Selecting previously unselected package libjbig0:arm64. 376s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 376s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 376s Selecting previously unselected package libwebp7:arm64. 376s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 376s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 376s Selecting previously unselected package libtiff6:arm64. 376s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 376s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 376s Selecting previously unselected package libxft2:arm64. 377s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 377s Unpacking libxft2:arm64 (2.3.6-1) ... 377s Selecting previously unselected package libxss1:arm64. 377s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 377s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 377s Selecting previously unselected package libtk8.6:arm64. 377s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 377s Unpacking libtk8.6:arm64 (8.6.13-2) ... 377s Selecting previously unselected package libxt6:arm64. 377s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 377s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 377s Selecting previously unselected package libxmu6:arm64. 377s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 377s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 377s Selecting previously unselected package libxpm4:arm64. 377s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 377s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 377s Selecting previously unselected package libxaw7:arm64. 377s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 377s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 377s Selecting previously unselected package libxi6:arm64. 377s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 377s Unpacking libxi6:arm64 (2:1.8.1-1) ... 377s Selecting previously unselected package libzzip-0-13:arm64. 377s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 377s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 377s Selecting previously unselected package zip. 377s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 377s Unpacking zip (3.0-13) ... 377s Selecting previously unselected package unzip. 377s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 377s Unpacking unzip (6.0-28ubuntu3) ... 377s Selecting previously unselected package xdg-utils. 377s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 377s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 377s Selecting previously unselected package r-base-core. 377s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 377s Unpacking r-base-core (4.3.2-1build1) ... 377s Selecting previously unselected package r-cran-littler. 377s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 377s Unpacking r-cran-littler (0.3.19-1) ... 378s Selecting previously unselected package littler. 378s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 378s Unpacking littler (0.3.19-1) ... 378s Selecting previously unselected package node-bootstrap-sass. 378s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 378s Unpacking node-bootstrap-sass (3.4.3-2) ... 378s Selecting previously unselected package node-html5shiv. 378s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 378s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 378s Selecting previously unselected package node-normalize.css. 378s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 378s Unpacking node-normalize.css (8.0.1-5) ... 378s Selecting previously unselected package pandoc-data. 378s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 378s Unpacking pandoc-data (3.1.3-1) ... 378s Selecting previously unselected package pandoc. 378s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 378s Unpacking pandoc (3.1.3+ds-2) ... 379s Selecting previously unselected package pkgconf-bin. 379s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 379s Unpacking pkgconf-bin (1.8.1-2) ... 379s Selecting previously unselected package pkgconf:arm64. 379s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 379s Unpacking pkgconf:arm64 (1.8.1-2) ... 379s Selecting previously unselected package pkg-config:arm64. 379s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 379s Unpacking pkg-config:arm64 (1.8.1-2) ... 379s Selecting previously unselected package liblzma-dev:arm64. 379s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 379s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 379s Selecting previously unselected package r-base-dev. 379s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 379s Unpacking r-base-dev (4.3.2-1build1) ... 379s Selecting previously unselected package pkg-r-autopkgtest. 379s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 379s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 379s Selecting previously unselected package r-bioc-biocgenerics. 379s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 379s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 379s Selecting previously unselected package r-bioc-biobase. 379s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 379s Unpacking r-bioc-biobase (2.62.0-1) ... 379s Selecting previously unselected package r-bioc-s4vectors. 379s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 379s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 379s Selecting previously unselected package r-bioc-iranges. 379s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 379s Unpacking r-bioc-iranges (2.36.0-1) ... 379s Selecting previously unselected package r-cran-dbi. 379s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 379s Unpacking r-cran-dbi (1.2.2-1) ... 379s Selecting previously unselected package r-cran-bit. 379s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 379s Unpacking r-cran-bit (4.0.5-1) ... 379s Selecting previously unselected package r-cran-bit64. 380s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 380s Unpacking r-cran-bit64 (4.0.5-1) ... 380s Selecting previously unselected package r-cran-rlang. 380s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 380s Unpacking r-cran-rlang (1.1.3-1) ... 380s Selecting previously unselected package r-cran-cli. 380s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 380s Unpacking r-cran-cli (3.6.2-1) ... 380s Selecting previously unselected package r-cran-glue. 380s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 380s Unpacking r-cran-glue (1.7.0-1) ... 380s Selecting previously unselected package r-cran-lifecycle. 380s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 380s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 380s Selecting previously unselected package r-cran-vctrs. 380s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 380s Unpacking r-cran-vctrs (0.6.5-1) ... 380s Selecting previously unselected package r-cran-blob. 380s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 380s Unpacking r-cran-blob (1.2.4-1) ... 380s Selecting previously unselected package r-cran-fastmap. 380s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 380s Unpacking r-cran-fastmap (1.1.1-1) ... 380s Selecting previously unselected package r-cran-cachem. 380s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 380s Unpacking r-cran-cachem (1.0.8-1) ... 380s Selecting previously unselected package r-cran-memoise. 380s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 380s Unpacking r-cran-memoise (2.0.1-1) ... 380s Selecting previously unselected package r-cran-pkgconfig. 380s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 380s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 380s Selecting previously unselected package r-cran-plogr. 380s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 380s Unpacking r-cran-plogr (0.2.0-3build1) ... 380s Selecting previously unselected package r-cran-cpp11. 380s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 380s Unpacking r-cran-cpp11 (0.4.7-1) ... 380s Selecting previously unselected package r-cran-rsqlite. 380s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 380s Unpacking r-cran-rsqlite (2.3.4-1) ... 380s Selecting previously unselected package r-cran-curl. 381s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 381s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 381s Selecting previously unselected package r-cran-jsonlite. 381s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 381s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 381s Selecting previously unselected package r-cran-mime. 381s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 381s Unpacking r-cran-mime (0.12-1) ... 381s Selecting previously unselected package r-cran-sys. 381s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 381s Unpacking r-cran-sys (3.4.2-1) ... 381s Selecting previously unselected package r-cran-askpass. 381s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 381s Unpacking r-cran-askpass (1.2.0-1) ... 381s Selecting previously unselected package r-cran-openssl. 381s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 381s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 381s Selecting previously unselected package r-cran-r6. 381s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 381s Unpacking r-cran-r6 (2.5.1-1) ... 381s Selecting previously unselected package r-cran-httr. 381s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 381s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 381s Selecting previously unselected package r-cran-png. 381s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 381s Unpacking r-cran-png (0.1-8-1) ... 381s Selecting previously unselected package r-bioc-zlibbioc. 381s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 381s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 381s Selecting previously unselected package r-bioc-xvector. 381s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 381s Unpacking r-bioc-xvector (0.42.0-1) ... 381s Selecting previously unselected package r-cran-bitops. 381s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 381s Unpacking r-cran-bitops (1.0-7-1) ... 381s Selecting previously unselected package r-cran-rcurl. 381s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 381s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 381s Selecting previously unselected package r-bioc-genomeinfodbdata. 381s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 381s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 381s Selecting previously unselected package r-bioc-genomeinfodb. 381s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 381s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 381s Selecting previously unselected package r-cran-crayon. 382s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 382s Unpacking r-cran-crayon (1.5.2-1) ... 382s Selecting previously unselected package r-bioc-biostrings. 382s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 382s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 382s Selecting previously unselected package r-bioc-keggrest. 382s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 382s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 382s Selecting previously unselected package r-bioc-annotationdbi. 382s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 382s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 382s Selecting previously unselected package r-bioc-genomicranges. 382s Preparing to unpack .../189-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 382s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 382s Selecting previously unselected package r-cran-lazyeval. 382s Preparing to unpack .../190-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 382s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 382s Selecting previously unselected package r-bioc-annotationfilter. 382s Preparing to unpack .../191-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 382s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 382s Selecting previously unselected package r-cran-generics. 382s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 382s Unpacking r-cran-generics (0.1.3-1) ... 383s Selecting previously unselected package r-cran-magrittr. 383s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_arm64.deb ... 383s Unpacking r-cran-magrittr (2.0.3-1) ... 383s Selecting previously unselected package r-cran-fansi. 383s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_arm64.deb ... 383s Unpacking r-cran-fansi (1.0.5-1) ... 383s Selecting previously unselected package r-cran-utf8. 383s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_arm64.deb ... 383s Unpacking r-cran-utf8 (1.2.4-1) ... 383s Selecting previously unselected package r-cran-pillar. 383s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 383s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-tibble. 383s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 383s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 383s Selecting previously unselected package r-cran-withr. 383s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 383s Unpacking r-cran-withr (2.5.0-1) ... 383s Selecting previously unselected package r-cran-tidyselect. 383s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 383s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-dplyr. 383s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_arm64.deb ... 383s Unpacking r-cran-dplyr (1.1.4-1) ... 383s Selecting previously unselected package r-cran-purrr. 383s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_arm64.deb ... 383s Unpacking r-cran-purrr (1.0.2-1) ... 383s Selecting previously unselected package r-cran-stringi. 383s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_arm64.deb ... 383s Unpacking r-cran-stringi (1.8.3-1) ... 383s Selecting previously unselected package r-cran-stringr. 383s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 383s Unpacking r-cran-stringr (1.5.1-1) ... 383s Selecting previously unselected package r-cran-tidyr. 383s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_arm64.deb ... 383s Unpacking r-cran-tidyr (1.3.1-1) ... 383s Selecting previously unselected package r-cran-dbplyr. 383s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 383s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 383s Selecting previously unselected package r-cran-filelock. 384s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_arm64.deb ... 384s Unpacking r-cran-filelock (1.0.3-1) ... 384s Selecting previously unselected package r-bioc-biocfilecache. 384s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 384s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-biocmanager. 384s Preparing to unpack .../208-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 384s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 384s Selecting previously unselected package r-bioc-biocversion. 384s Preparing to unpack .../209-r-bioc-biocversion_3.18.1-1_all.deb ... 384s Unpacking r-bioc-biocversion (3.18.1-1) ... 384s Selecting previously unselected package r-cran-rappdirs. 384s Preparing to unpack .../210-r-cran-rappdirs_0.3.3-1_arm64.deb ... 384s Unpacking r-cran-rappdirs (0.3.3-1) ... 384s Selecting previously unselected package r-cran-yaml. 384s Preparing to unpack .../211-r-cran-yaml_2.3.8-1_arm64.deb ... 384s Unpacking r-cran-yaml (2.3.8-1) ... 384s Selecting previously unselected package r-cran-pkgkitten. 384s Preparing to unpack .../212-r-cran-pkgkitten_0.2.3-1_all.deb ... 384s Unpacking r-cran-pkgkitten (0.2.3-1) ... 384s Selecting previously unselected package r-cran-rcpp. 384s Preparing to unpack .../213-r-cran-rcpp_1.0.12-1_arm64.deb ... 384s Unpacking r-cran-rcpp (1.0.12-1) ... 384s Selecting previously unselected package r-cran-later. 384s Preparing to unpack .../214-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 384s Unpacking r-cran-later (1.3.2+dfsg-1) ... 384s Selecting previously unselected package r-cran-promises. 384s Preparing to unpack .../215-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 384s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 384s Selecting previously unselected package r-cran-httpuv. 384s Preparing to unpack .../216-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 384s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 384s Selecting previously unselected package r-cran-xtable. 384s Preparing to unpack .../217-r-cran-xtable_1%3a1.8-4-2_all.deb ... 384s Unpacking r-cran-xtable (1:1.8-4-2) ... 384s Selecting previously unselected package r-cran-base64enc. 384s Preparing to unpack .../218-r-cran-base64enc_0.1-3-3_arm64.deb ... 384s Unpacking r-cran-base64enc (0.1-3-3) ... 384s Selecting previously unselected package r-cran-digest. 384s Preparing to unpack .../219-r-cran-digest_0.6.34-1_arm64.deb ... 384s Unpacking r-cran-digest (0.6.34-1) ... 384s Selecting previously unselected package r-cran-ellipsis. 384s Preparing to unpack .../220-r-cran-ellipsis_0.3.2-2_arm64.deb ... 384s Unpacking r-cran-ellipsis (0.3.2-2) ... 384s Selecting previously unselected package r-cran-htmltools. 385s Preparing to unpack .../221-r-cran-htmltools_0.5.7-1_arm64.deb ... 385s Unpacking r-cran-htmltools (0.5.7-1) ... 385s Selecting previously unselected package r-cran-fontawesome. 385s Preparing to unpack .../222-r-cran-fontawesome_0.5.2-1_all.deb ... 385s Unpacking r-cran-fontawesome (0.5.2-1) ... 385s Selecting previously unselected package r-cran-sourcetools. 385s Preparing to unpack .../223-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 385s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 385s Selecting previously unselected package r-cran-commonmark. 385s Preparing to unpack .../224-r-cran-commonmark_1.9.1-1_arm64.deb ... 385s Unpacking r-cran-commonmark (1.9.1-1) ... 385s Selecting previously unselected package r-cran-jquerylib. 385s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 385s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 385s Selecting previously unselected package r-cran-fs. 385s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 385s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 385s Selecting previously unselected package r-cran-sass. 385s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 385s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 385s Selecting previously unselected package r-cran-bslib. 385s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 385s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 385s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 385s Preparing to unpack .../229-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 385s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 385s Selecting previously unselected package r-cran-shiny. 385s Preparing to unpack .../230-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 385s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 385s Selecting previously unselected package r-cran-evaluate. 385s Preparing to unpack .../231-r-cran-evaluate_0.23-1_all.deb ... 385s Unpacking r-cran-evaluate (0.23-1) ... 385s Selecting previously unselected package r-cran-xfun. 385s Preparing to unpack .../232-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 385s Unpacking r-cran-xfun (0.41+dfsg-1) ... 385s Selecting previously unselected package r-cran-highr. 385s Preparing to unpack .../233-r-cran-highr_0.10+dfsg-1_all.deb ... 385s Unpacking r-cran-highr (0.10+dfsg-1) ... 385s Selecting previously unselected package libjs-mathjax. 385s Preparing to unpack .../234-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 385s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 386s Selecting previously unselected package r-cran-knitr. 386s Preparing to unpack .../235-r-cran-knitr_1.45+dfsg-1_all.deb ... 386s Unpacking r-cran-knitr (1.45+dfsg-1) ... 386s Selecting previously unselected package r-cran-tinytex. 386s Preparing to unpack .../236-r-cran-tinytex_0.49-1_all.deb ... 386s Unpacking r-cran-tinytex (0.49-1) ... 386s Selecting previously unselected package libjs-modernizr. 386s Preparing to unpack .../237-libjs-modernizr_2.6.2+ds1-5_all.deb ... 386s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 386s Selecting previously unselected package r-cran-rmarkdown. 386s Preparing to unpack .../238-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 386s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 386s Selecting previously unselected package r-cran-htmlwidgets. 386s Preparing to unpack .../239-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 386s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 386s Selecting previously unselected package r-cran-crosstalk. 386s Preparing to unpack .../240-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 386s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 386s Selecting previously unselected package r-cran-dt. 386s Preparing to unpack .../241-r-cran-dt_0.31+dfsg-1_all.deb ... 386s Unpacking r-cran-dt (0.31+dfsg-1) ... 386s Selecting previously unselected package r-bioc-interactivedisplaybase. 386s Preparing to unpack .../242-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 386s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 386s Selecting previously unselected package r-bioc-annotationhub. 386s Preparing to unpack .../243-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 386s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 386s Selecting previously unselected package r-cran-lattice. 386s Preparing to unpack .../244-r-cran-lattice_0.22-5-1_arm64.deb ... 386s Unpacking r-cran-lattice (0.22-5-1) ... 386s Selecting previously unselected package r-cran-matrix. 387s Preparing to unpack .../245-r-cran-matrix_1.6-5-1_arm64.deb ... 387s Unpacking r-cran-matrix (1.6-5-1) ... 387s Selecting previously unselected package r-cran-rcpptoml. 387s Preparing to unpack .../246-r-cran-rcpptoml_0.2.2+dfsg-1_arm64.deb ... 387s Unpacking r-cran-rcpptoml (0.2.2+dfsg-1) ... 387s Selecting previously unselected package r-cran-rprojroot. 387s Preparing to unpack .../247-r-cran-rprojroot_2.0.4-1_all.deb ... 387s Unpacking r-cran-rprojroot (2.0.4-1) ... 387s Selecting previously unselected package r-cran-here. 387s Preparing to unpack .../248-r-cran-here_1.0.1-2_all.deb ... 387s Unpacking r-cran-here (1.0.1-2) ... 387s Selecting previously unselected package r-cran-reticulate. 387s Preparing to unpack .../249-r-cran-reticulate_1.35.0+dfsg-1_arm64.deb ... 387s Unpacking r-cran-reticulate (1.35.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-dir.expiry. 387s Preparing to unpack .../250-r-bioc-dir.expiry_1.10.0+ds-1_all.deb ... 387s Unpacking r-bioc-dir.expiry (1.10.0+ds-1) ... 387s Selecting previously unselected package r-bioc-basilisk.utils. 387s Preparing to unpack .../251-r-bioc-basilisk.utils_1.14.1+ds-1_all.deb ... 387s Unpacking r-bioc-basilisk.utils (1.14.1+ds-1) ... 387s Selecting previously unselected package r-bioc-basilisk. 387s Preparing to unpack .../252-r-bioc-basilisk_1.14.3+ds-1_arm64.deb ... 387s Unpacking r-bioc-basilisk (1.14.3+ds-1) ... 387s Selecting previously unselected package r-cran-matrixstats. 387s Preparing to unpack .../253-r-cran-matrixstats_1.2.0-1_arm64.deb ... 387s Unpacking r-cran-matrixstats (1.2.0-1) ... 387s Selecting previously unselected package r-bioc-matrixgenerics. 387s Preparing to unpack .../254-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 387s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 387s Selecting previously unselected package r-cran-abind. 387s Preparing to unpack .../255-r-cran-abind_1.4-5-2_all.deb ... 387s Unpacking r-cran-abind (1.4-5-2) ... 387s Selecting previously unselected package r-bioc-s4arrays. 387s Preparing to unpack .../256-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 387s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-sparsearray. 387s Preparing to unpack .../257-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 387s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 387s Selecting previously unselected package r-bioc-delayedarray. 387s Preparing to unpack .../258-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 387s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 387s Selecting previously unselected package r-bioc-beachmat. 387s Preparing to unpack .../259-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 387s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 388s Selecting previously unselected package r-bioc-biocio. 388s Preparing to unpack .../260-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 388s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 388s Selecting previously unselected package r-cran-formatr. 388s Preparing to unpack .../261-r-cran-formatr_1.14-1_all.deb ... 388s Unpacking r-cran-formatr (1.14-1) ... 388s Selecting previously unselected package r-cran-lambda.r. 388s Preparing to unpack .../262-r-cran-lambda.r_1.2.4-2build1_all.deb ... 388s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 388s Selecting previously unselected package r-cran-futile.options. 388s Preparing to unpack .../263-r-cran-futile.options_1.0.1-3build1_all.deb ... 388s Unpacking r-cran-futile.options (1.0.1-3build1) ... 388s Selecting previously unselected package r-cran-futile.logger. 388s Preparing to unpack .../264-r-cran-futile.logger_1.4.3-4build1_all.deb ... 388s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 388s Selecting previously unselected package r-cran-snow. 388s Preparing to unpack .../265-r-cran-snow_1%3a0.4.4-2_all.deb ... 388s Unpacking r-cran-snow (1:0.4.4-2) ... 388s Selecting previously unselected package r-cran-codetools. 388s Preparing to unpack .../266-r-cran-codetools_0.2-19-1_all.deb ... 388s Unpacking r-cran-codetools (0.2-19-1) ... 388s Selecting previously unselected package r-cran-bh. 388s Preparing to unpack .../267-r-cran-bh_1.84.0-1_all.deb ... 388s Unpacking r-cran-bh (1.84.0-1) ... 388s Selecting previously unselected package r-bioc-biocparallel. 388s Preparing to unpack .../268-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 388s Unpacking r-bioc-biocparallel (1.36.0-1) ... 388s Selecting previously unselected package r-cran-rcpphnsw. 388s Preparing to unpack .../269-r-cran-rcpphnsw_0.5.0+ds-1_arm64.deb ... 388s Unpacking r-cran-rcpphnsw (0.5.0+ds-1) ... 388s Selecting previously unselected package r-bioc-biocneighbors. 388s Preparing to unpack .../270-r-bioc-biocneighbors_1.20.2+ds-1_arm64.deb ... 388s Unpacking r-bioc-biocneighbors (1.20.2+ds-1) ... 388s Selecting previously unselected package r-bioc-scaledmatrix. 388s Preparing to unpack .../271-r-bioc-scaledmatrix_1.10.0+dfsg-1_all.deb ... 388s Unpacking r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 388s Selecting previously unselected package r-cran-irlba. 388s Preparing to unpack .../272-r-cran-irlba_2.3.5.1-2_arm64.deb ... 388s Unpacking r-cran-irlba (2.3.5.1-2) ... 388s Selecting previously unselected package r-cran-rsvd. 388s Preparing to unpack .../273-r-cran-rsvd_1.0.5-1_all.deb ... 388s Unpacking r-cran-rsvd (1.0.5-1) ... 388s Selecting previously unselected package r-bioc-biocsingular. 388s Preparing to unpack .../274-r-bioc-biocsingular_1.18.0+ds-1_arm64.deb ... 388s Unpacking r-bioc-biocsingular (1.18.0+ds-1) ... 388s Selecting previously unselected package r-cran-bookdown. 388s Preparing to unpack .../275-r-cran-bookdown_0.37+dfsg-1_all.deb ... 388s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 388s Selecting previously unselected package tex-common. 388s Preparing to unpack .../276-tex-common_6.18_all.deb ... 388s Unpacking tex-common (6.18) ... 389s Selecting previously unselected package t1utils. 389s Preparing to unpack .../277-t1utils_1.41-4build2_arm64.deb ... 389s Unpacking t1utils (1.41-4build2) ... 389s Selecting previously unselected package texlive-binaries. 389s Preparing to unpack .../278-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 389s Unpacking texlive-binaries (2023.20230311.66589-9) ... 389s Selecting previously unselected package texlive-base. 389s Preparing to unpack .../279-texlive-base_2023.20240207-1_all.deb ... 389s Unpacking texlive-base (2023.20240207-1) ... 390s Selecting previously unselected package texlive-latex-base. 390s Preparing to unpack .../280-texlive-latex-base_2023.20240207-1_all.deb ... 390s Unpacking texlive-latex-base (2023.20240207-1) ... 390s Selecting previously unselected package texlive-bibtex-extra. 390s Preparing to unpack .../281-texlive-bibtex-extra_2023.20240207-1_all.deb ... 390s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 393s Selecting previously unselected package r-bioc-biocstyle. 393s Preparing to unpack .../282-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 393s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 393s Selecting previously unselected package r-cran-xml. 393s Preparing to unpack .../283-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 393s Unpacking r-cran-xml (3.99-0.16.1-1) ... 393s Selecting previously unselected package r-cran-hms. 393s Preparing to unpack .../284-r-cran-hms_1.1.3-1_all.deb ... 393s Unpacking r-cran-hms (1.1.3-1) ... 393s Selecting previously unselected package r-cran-prettyunits. 393s Preparing to unpack .../285-r-cran-prettyunits_1.2.0-1_all.deb ... 393s Unpacking r-cran-prettyunits (1.2.0-1) ... 393s Selecting previously unselected package r-cran-progress. 393s Preparing to unpack .../286-r-cran-progress_1.2.3-1_all.deb ... 393s Unpacking r-cran-progress (1.2.3-1) ... 393s Selecting previously unselected package r-cran-xml2. 393s Preparing to unpack .../287-r-cran-xml2_1.3.6-1_arm64.deb ... 393s Unpacking r-cran-xml2 (1.3.6-1) ... 393s Selecting previously unselected package r-bioc-biomart. 393s Preparing to unpack .../288-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 393s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 393s Selecting previously unselected package r-bioc-sparsematrixstats. 393s Preparing to unpack .../289-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 393s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 393s Selecting previously unselected package r-bioc-delayedmatrixstats. 393s Preparing to unpack .../290-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 393s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 393s Selecting previously unselected package r-cran-assertthat. 393s Preparing to unpack .../291-r-cran-assertthat_0.2.1-2build1_all.deb ... 393s Unpacking r-cran-assertthat (0.2.1-2build1) ... 393s Selecting previously unselected package r-cran-rtsne. 394s Preparing to unpack .../292-r-cran-rtsne_0.17-1_arm64.deb ... 394s Unpacking r-cran-rtsne (0.17-1) ... 394s Selecting previously unselected package r-bioc-densvis. 394s Preparing to unpack .../293-r-bioc-densvis_1.12.1+dfsg-1_arm64.deb ... 394s Unpacking r-bioc-densvis (1.12.1+dfsg-1) ... 394s Selecting previously unselected package r-bioc-rhtslib. 394s Preparing to unpack .../294-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 394s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 394s Selecting previously unselected package r-bioc-rsamtools. 394s Preparing to unpack .../295-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 394s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 394s Selecting previously unselected package r-bioc-summarizedexperiment. 394s Preparing to unpack .../296-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 394s Selecting previously unselected package r-bioc-genomicalignments. 394s Preparing to unpack .../297-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 394s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 394s Selecting previously unselected package r-cran-rjson. 394s Preparing to unpack .../298-r-cran-rjson_0.2.21-1_arm64.deb ... 394s Unpacking r-cran-rjson (0.2.21-1) ... 394s Selecting previously unselected package r-cran-restfulr. 394s Preparing to unpack .../299-r-cran-restfulr_0.0.15-1_arm64.deb ... 394s Unpacking r-cran-restfulr (0.0.15-1) ... 394s Selecting previously unselected package r-bioc-rtracklayer. 394s Preparing to unpack .../300-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 394s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 394s Selecting previously unselected package r-bioc-genomicfeatures. 394s Preparing to unpack .../301-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 394s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 394s Selecting previously unselected package r-bioc-protgenerics. 394s Preparing to unpack .../302-r-bioc-protgenerics_1.34.0-1_all.deb ... 394s Unpacking r-bioc-protgenerics (1.34.0-1) ... 394s Selecting previously unselected package r-bioc-ensembldb. 394s Preparing to unpack .../303-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 394s Selecting previously unselected package r-bioc-experimenthub. 394s Preparing to unpack .../304-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 394s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 394s Selecting previously unselected package r-bioc-singlecellexperiment. 394s Preparing to unpack .../305-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 394s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 394s Selecting previously unselected package r-bioc-scuttle. 394s Preparing to unpack .../306-r-bioc-scuttle_1.12.0+dfsg-1_arm64.deb ... 394s Unpacking r-bioc-scuttle (1.12.0+dfsg-1) ... 394s Selecting previously unselected package r-cran-gtable. 395s Preparing to unpack .../307-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 395s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 395s Selecting previously unselected package r-cran-isoband. 395s Preparing to unpack .../308-r-cran-isoband_0.2.7-1_arm64.deb ... 395s Unpacking r-cran-isoband (0.2.7-1) ... 395s Selecting previously unselected package r-cran-mass. 395s Preparing to unpack .../309-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 395s Unpacking r-cran-mass (7.3-60.0.1-1) ... 395s Selecting previously unselected package r-cran-nlme. 395s Preparing to unpack .../310-r-cran-nlme_3.1.164-1_arm64.deb ... 395s Unpacking r-cran-nlme (3.1.164-1) ... 395s Selecting previously unselected package r-cran-mgcv. 395s Preparing to unpack .../311-r-cran-mgcv_1.9-1-1_arm64.deb ... 395s Unpacking r-cran-mgcv (1.9-1-1) ... 395s Selecting previously unselected package r-cran-farver. 395s Preparing to unpack .../312-r-cran-farver_2.1.1-1_arm64.deb ... 395s Unpacking r-cran-farver (2.1.1-1) ... 395s Selecting previously unselected package r-cran-labeling. 395s Preparing to unpack .../313-r-cran-labeling_0.4.3-1_all.deb ... 395s Unpacking r-cran-labeling (0.4.3-1) ... 395s Selecting previously unselected package r-cran-colorspace. 395s Preparing to unpack .../314-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 395s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 395s Selecting previously unselected package r-cran-munsell. 395s Preparing to unpack .../315-r-cran-munsell_0.5.0-2build1_all.deb ... 395s Unpacking r-cran-munsell (0.5.0-2build1) ... 395s Selecting previously unselected package r-cran-rcolorbrewer. 395s Preparing to unpack .../316-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 395s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 395s Selecting previously unselected package r-cran-viridislite. 395s Preparing to unpack .../317-r-cran-viridislite_0.4.2-2_all.deb ... 395s Unpacking r-cran-viridislite (0.4.2-2) ... 395s Selecting previously unselected package r-cran-scales. 395s Preparing to unpack .../318-r-cran-scales_1.3.0-1_all.deb ... 395s Unpacking r-cran-scales (1.3.0-1) ... 395s Selecting previously unselected package r-cran-ggplot2. 395s Preparing to unpack .../319-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 395s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 395s Selecting previously unselected package r-cran-beeswarm. 395s Preparing to unpack .../320-r-cran-beeswarm_0.4.0-1_arm64.deb ... 395s Unpacking r-cran-beeswarm (0.4.0-1) ... 395s Selecting previously unselected package r-cran-vipor. 395s Preparing to unpack .../321-r-cran-vipor_0.4.7-1_all.deb ... 395s Unpacking r-cran-vipor (0.4.7-1) ... 395s Selecting previously unselected package r-cran-ggbeeswarm. 395s Preparing to unpack .../322-r-cran-ggbeeswarm_0.7.2-1_all.deb ... 395s Unpacking r-cran-ggbeeswarm (0.7.2-1) ... 395s Selecting previously unselected package r-cran-gridextra. 395s Preparing to unpack .../323-r-cran-gridextra_2.3-3build1_all.deb ... 395s Unpacking r-cran-gridextra (2.3-3build1) ... 396s Selecting previously unselected package r-cran-viridis. 396s Preparing to unpack .../324-r-cran-viridis_0.6.5-1_all.deb ... 396s Unpacking r-cran-viridis (0.6.5-1) ... 396s Selecting previously unselected package r-cran-rcppeigen. 396s Preparing to unpack .../325-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 396s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 396s Selecting previously unselected package r-cran-rcppml. 396s Preparing to unpack .../326-r-cran-rcppml_0.3.7-2_arm64.deb ... 396s Unpacking r-cran-rcppml (0.3.7-2) ... 396s Selecting previously unselected package r-cran-fnn. 396s Preparing to unpack .../327-r-cran-fnn_1.1.4-1_arm64.deb ... 396s Unpacking r-cran-fnn (1.1.4-1) ... 396s Selecting previously unselected package r-cran-rcppannoy. 396s Preparing to unpack .../328-r-cran-rcppannoy_0.0.22-1_arm64.deb ... 396s Unpacking r-cran-rcppannoy (0.0.22-1) ... 396s Selecting previously unselected package r-cran-rcppprogress. 396s Preparing to unpack .../329-r-cran-rcppprogress_0.4.2-2build1_all.deb ... 396s Unpacking r-cran-rcppprogress (0.4.2-2build1) ... 396s Selecting previously unselected package r-cran-sitmo. 396s Preparing to unpack .../330-r-cran-sitmo_2.0.2-1_arm64.deb ... 396s Unpacking r-cran-sitmo (2.0.2-1) ... 396s Selecting previously unselected package r-cran-dqrng. 396s Preparing to unpack .../331-r-cran-dqrng_0.3.2+dfsg-1_arm64.deb ... 396s Unpacking r-cran-dqrng (0.3.2+dfsg-1) ... 396s Selecting previously unselected package r-cran-uwot. 396s Preparing to unpack .../332-r-cran-uwot_0.1.16-2_arm64.deb ... 396s Unpacking r-cran-uwot (0.1.16-2) ... 396s Selecting previously unselected package r-cran-pheatmap. 396s Preparing to unpack .../333-r-cran-pheatmap_1.0.12-2build1_all.deb ... 396s Unpacking r-cran-pheatmap (1.0.12-2build1) ... 396s Selecting previously unselected package r-cran-ggrepel. 396s Preparing to unpack .../334-r-cran-ggrepel_0.9.5-1_arm64.deb ... 396s Unpacking r-cran-ggrepel (0.9.5-1) ... 396s Selecting previously unselected package r-cran-cairo. 396s Preparing to unpack .../335-r-cran-cairo_1.6-2-1_arm64.deb ... 396s Unpacking r-cran-cairo (1.6-2-1) ... 396s Selecting previously unselected package r-cran-systemfonts. 396s Preparing to unpack .../336-r-cran-systemfonts_1.0.5-1_arm64.deb ... 396s Unpacking r-cran-systemfonts (1.0.5-1) ... 396s Selecting previously unselected package r-cran-textshaping. 396s Preparing to unpack .../337-r-cran-textshaping_0.3.7-2_arm64.deb ... 396s Unpacking r-cran-textshaping (0.3.7-2) ... 396s Selecting previously unselected package r-cran-ragg. 396s Preparing to unpack .../338-r-cran-ragg_1.2.7-1_arm64.deb ... 396s Unpacking r-cran-ragg (1.2.7-1) ... 396s Selecting previously unselected package r-cran-ggrastr. 396s Preparing to unpack .../339-r-cran-ggrastr_1.0.2-1_all.deb ... 396s Unpacking r-cran-ggrastr (1.0.2-1) ... 397s Selecting previously unselected package r-bioc-scater. 397s Preparing to unpack .../340-r-bioc-scater_1.30.1+ds-2_all.deb ... 397s Unpacking r-bioc-scater (1.30.1+ds-2) ... 397s Selecting previously unselected package r-bioc-scrnaseq. 397s Preparing to unpack .../341-r-bioc-scrnaseq_2.16.0+ds-1_all.deb ... 397s Unpacking r-bioc-scrnaseq (2.16.0+ds-1) ... 397s Selecting previously unselected package r-cran-brio. 397s Preparing to unpack .../342-r-cran-brio_1.1.4-1_arm64.deb ... 397s Unpacking r-cran-brio (1.1.4-1) ... 397s Selecting previously unselected package r-cran-ps. 397s Preparing to unpack .../343-r-cran-ps_1.7.6-1_arm64.deb ... 397s Unpacking r-cran-ps (1.7.6-1) ... 397s Selecting previously unselected package r-cran-processx. 397s Preparing to unpack .../344-r-cran-processx_3.8.3-1_arm64.deb ... 397s Unpacking r-cran-processx (3.8.3-1) ... 397s Selecting previously unselected package r-cran-callr. 397s Preparing to unpack .../345-r-cran-callr_3.7.3-2_all.deb ... 397s Unpacking r-cran-callr 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(13.2.0-17ubuntu2) ... 400s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 400s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 400s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 400s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 400s Setting up pkgconf:arm64 (1.8.1-2) ... 400s Setting up libthai0:arm64 (0.1.29-2) ... 400s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 400s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 400s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 400s Setting up pandoc (3.1.3+ds-2) ... 400s Setting up liblapack-dev:arm64 (3.12.0-3) ... 400s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 400s Setting up pkg-config:arm64 (1.8.1-2) ... 400s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 400s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 400s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 400s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 400s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 400s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 400s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 400s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 400s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 400s Setting up fontconfig (2.15.0-1ubuntu1) ... 402s Regenerating fonts cache... done. 402s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 402s Setting up libxft2:arm64 (2.3.6-1) ... 402s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 402s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 402s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 402s Setting up cpp-13 (13.2.0-17ubuntu2) ... 402s Setting up libtk8.6:arm64 (8.6.13-2) ... 402s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 402s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 402s Setting up libreadline-dev:arm64 (8.2-3) ... 402s Setting up libcairo2:arm64 (1.18.0-1) ... 402s Setting up gcc-13 (13.2.0-17ubuntu2) ... 402s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 402s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 402s Setting up cpp (4:13.2.0-7ubuntu1) ... 402s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 402s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 402s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 402s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 402s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 402s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 402s Setting up g++-13 (13.2.0-17ubuntu2) ... 402s Setting up libxmu6:arm64 (2:1.1.3-3) ... 402s Setting up libpng-dev:arm64 (1.6.43-1) ... 402s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 402s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 402s Setting up libxaw7:arm64 (2:1.0.14-1) ... 402s Setting up gcc (4:13.2.0-7ubuntu1) ... 402s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 402s Setting up r-base-core (4.3.2-1build1) ... 402s 402s Creating config file /etc/R/Renviron with new version 403s Setting up r-cran-crayon (1.5.2-1) ... 403s Setting up r-cran-labeling (0.4.3-1) ... 403s Setting up r-cran-rcppprogress (0.4.2-2build1) ... 403s Setting up r-cran-sourcetools (0.1.7-1-1) ... 403s Setting up r-cran-futile.options (1.0.1-3build1) ... 403s Setting up r-cran-lattice (0.22-5-1) ... 403s Setting up r-cran-ps (1.7.6-1) ... 403s Setting up r-cran-nlme (3.1.164-1) ... 403s Setting up r-cran-farver (2.1.1-1) ... 403s Setting up r-cran-formatr (1.14-1) ... 403s Setting up r-cran-xml (3.99-0.16.1-1) ... 403s Setting up r-cran-viridislite (0.4.2-2) ... 403s Setting up texlive-binaries (2023.20230311.66589-9) ... 403s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 403s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 403s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 403s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 403s Setting up r-cran-lazyeval (0.2.2-1build1) ... 403s Setting up r-cran-commonmark (1.9.1-1) ... 403s Setting up r-cran-r6 (2.5.1-1) ... 403s Setting up r-cran-pkgkitten (0.2.3-1) ... 403s Setting up texlive-base (2023.20240207-1) ... 403s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 403s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 404s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 404s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 404s Setting up r-cran-magrittr (2.0.3-1) ... 404s Setting up r-cran-rappdirs (0.3.3-1) ... 404s Setting up r-cran-filelock (1.0.3-1) ... 404s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 404s Setting up r-cran-littler (0.3.19-1) ... 404s Setting up r-cran-bh (1.84.0-1) ... 404s Setting up r-cran-fs (1.6.3+dfsg-1) ... 404s Setting up r-cran-rcpp (1.0.12-1) ... 404s Setting up r-cran-curl (5.2.0+dfsg-1) ... 404s Setting up r-cran-codetools (0.2-19-1) ... 404s Setting up r-cran-brio (1.1.4-1) ... 404s Setting up r-cran-diffobj (0.3.5-1) ... 404s Setting up r-bioc-biocgenerics (0.48.1-2) ... 404s Setting up r-cran-rlang (1.1.3-1) ... 404s Setting up r-cran-matrixstats (1.2.0-1) ... 404s Setting up r-cran-assertthat (0.2.1-2build1) ... 404s Setting up littler (0.3.19-1) ... 404s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 404s Setting up r-cran-xfun (0.41+dfsg-1) ... 404s Setting up r-cran-rcpphnsw (0.5.0+ds-1) ... 404s Setting up r-cran-sys (3.4.2-1) ... 404s Setting up r-cran-deoptimr (1.1-3-1) ... 404s Setting up r-cran-plogr (0.2.0-3build1) ... 404s Setting up r-cran-withr (2.5.0-1) ... 404s Setting up r-cran-processx (3.8.3-1) ... 404s Setting up r-cran-mime (0.12-1) ... 404s Setting up r-cran-praise (1.0.0-4build1) ... 404s Setting up r-cran-vipor (0.4.7-1) ... 404s Setting up r-cran-generics (0.1.3-1) ... 404s Setting up r-cran-base64enc (0.1-3-3) ... 404s Setting up r-cran-beeswarm (0.4.0-1) ... 404s Setting up r-cran-abind (1.4-5-2) ... 404s Setting up r-cran-digest (0.6.34-1) ... 404s Setting up r-cran-yaml (2.3.8-1) ... 404s Setting up r-cran-lambda.r (1.2.4-2build1) ... 404s Setting up r-bioc-protgenerics (1.34.0-1) ... 404s Setting up r-cran-evaluate (0.23-1) ... 404s Setting up r-cran-dbi (1.2.2-1) ... 404s Setting up r-cran-highr (0.10+dfsg-1) ... 404s Setting up r-cran-prettyunits (1.2.0-1) ... 404s Setting up r-cran-fansi (1.0.5-1) ... 404s Setting up r-cran-mass (7.3-60.0.1-1) ... 404s Setting up r-cran-cairo (1.6-2-1) ... 404s Setting up r-cran-snow (1:0.4.4-2) ... 404s Setting up r-cran-glue (1.7.0-1) ... 404s Setting up r-cran-bit (4.0.5-1) ... 404s Setting up r-cran-xtable (1:1.8-4-2) ... 404s Setting up r-cran-cli (3.6.2-1) ... 404s Setting up gfortran (4:13.2.0-7ubuntu1) ... 404s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 404s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 404s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 404s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 404s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 404s Setting up r-cran-bitops (1.0-7-1) ... 404s Setting up r-bioc-biocversion (3.18.1-1) ... 404s Setting up r-cran-rprojroot (2.0.4-1) ... 404s Setting up r-cran-fnn (1.1.4-1) ... 404s Setting up r-cran-bit64 (4.0.5-1) ... 404s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 404s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 404s Setting up r-cran-askpass (1.2.0-1) ... 404s Setting up r-cran-fastmap (1.1.1-1) ... 404s Setting up r-cran-png (0.1-8-1) ... 404s Setting up r-bioc-biobase (2.62.0-1) ... 404s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 404s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 404s Setting up r-cran-utf8 (1.2.4-1) ... 404s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 404s Setting up r-cran-stringi (1.8.3-1) ... 404s Setting up texlive-latex-base (2023.20240207-1) ... 404s Setting up r-cran-cpp11 (0.4.7-1) ... 404s Setting up r-cran-sitmo (2.0.2-1) ... 404s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 404s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 404s Setting up r-cran-isoband (0.2.7-1) ... 404s Setting up r-cran-futile.logger (1.4.3-4build1) ... 404s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 404s Setting up r-cran-later (1.3.2+dfsg-1) ... 404s Setting up r-cran-matrix (1.6-5-1) ... 404s Setting up r-cran-here (1.0.1-2) ... 404s Setting up r-cran-tinytex (0.49-1) ... 404s Setting up r-cran-irlba (2.3.5.1-2) ... 404s Setting up r-cran-knitr (1.45+dfsg-1) ... 404s Setting up r-cran-rcpptoml (0.2.2+dfsg-1) ... 404s Setting up r-cran-mgcv (1.9-1-1) ... 404s Setting up g++ (4:13.2.0-7ubuntu1) ... 404s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 404s Setting up r-cran-robustbase (0.99-2-1) ... 404s Setting up r-cran-cachem (1.0.8-1) ... 404s Setting up build-essential (12.10ubuntu1) ... 404s Setting up r-cran-rtsne (0.17-1) ... 404s Setting up r-bioc-iranges (2.36.0-1) ... 404s Setting up r-cran-dqrng (0.3.2+dfsg-1) ... 404s Setting up r-cran-rjson (0.2.21-1) ... 404s Setting up r-cran-reticulate (1.35.0+dfsg-1) ... 404s Setting up r-bioc-dir.expiry (1.10.0+ds-1) ... 404s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 404s Setting up r-cran-restfulr (0.0.15-1) ... 404s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 404s Setting up r-cran-vctrs (0.6.5-1) ... 404s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 404s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 404s Setting up r-bioc-basilisk.utils (1.14.1+ds-1) ... 404s Setting up r-cran-ellipsis (0.3.2-2) ... 404s Setting up r-cran-rcppannoy (0.0.22-1) ... 404s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 404s Setting up r-base-dev (4.3.2-1build1) ... 404s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 404s Setting up r-cran-stringr (1.5.1-1) ... 404s Setting up r-bioc-biocparallel (1.36.0-1) ... 404s Setting up r-cran-callr (3.7.3-2) ... 404s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 404s Setting up r-cran-desc (1.4.3-1) ... 404s Setting up r-cran-xml2 (1.3.6-1) ... 404s Setting up r-cran-munsell (0.5.0-2build1) ... 404s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 404s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 404s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 404s Setting up texlive-bibtex-extra (2023.20240207-1) ... 404s Setting up r-cran-rsvd (1.0.5-1) ... 404s Setting up r-bioc-basilisk (1.14.3+ds-1) ... 404s Setting up r-cran-systemfonts (1.0.5-1) ... 404s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 404s Setting up r-cran-httr (1.4.7+dfsg-1) ... 404s Setting up r-cran-gridextra (2.3-3build1) ... 404s Setting up r-cran-hms (1.1.3-1) ... 404s Setting up r-cran-scales (1.3.0-1) ... 404s Setting up r-cran-memoise (2.0.1-1) ... 404s Setting up r-cran-promises (1.2.1+dfsg-1) ... 404s Setting up r-cran-purrr (1.0.2-1) ... 404s Setting up r-cran-blob (1.2.4-1) ... 404s Setting up r-cran-htmltools (0.5.7-1) ... 404s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 404s Setting up r-bioc-xvector (0.42.0-1) ... 404s Setting up r-cran-pkgbuild (1.4.3-1) ... 404s Setting up r-cran-sass (0.4.8+dfsg-1) ... 404s Setting up r-cran-rcppml (0.3.7-2) ... 404s Setting up r-cran-dplyr (1.1.4-1) ... 404s Setting up r-cran-rsqlite (2.3.4-1) ... 404s Setting up r-cran-uwot (0.1.16-2) ... 404s Setting up r-cran-progress (1.2.3-1) ... 404s Setting up r-bioc-biocneighbors (1.20.2+ds-1) ... 404s Setting up r-cran-pheatmap (1.0.12-2build1) ... 404s Setting up r-cran-pkgload (1.3.4-1) ... 404s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 404s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 404s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 404s Setting up r-cran-scattermore (1.2-1) ... 404s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 404s Setting up r-cran-rematch2 (2.1.2-2build1) ... 404s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 404s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 404s Setting up r-cran-fontawesome (0.5.2-1) ... 404s Setting up r-cran-textshaping (0.3.7-2) ... 404s Setting up r-bioc-densvis (1.12.1+dfsg-1) ... 404s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 404s Setting up r-cran-viridis (0.6.5-1) ... 404s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 404s Setting up r-cran-ragg (1.2.7-1) ... 404s Setting up r-cran-waldo (0.5.2-1build1) ... 404s Setting up r-cran-ggrepel (0.9.5-1) ... 404s Setting up r-cran-tidyr (1.3.1-1) ... 404s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 404s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 404s Setting up r-cran-ggbeeswarm (0.7.2-1) ... 404s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 404s Setting up r-cran-cowplot (1.1.3+dfsg-1) ... 404s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 404s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 404s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 404s Setting up r-bioc-annotationdbi (1.64.1-1) ... 404s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 404s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 404s Setting up r-cran-testthat (3.2.1-1) ... 404s Setting up r-cran-ggrastr (1.0.2-1) ... 404s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 404s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 404s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 404s Setting up r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 404s Setting up r-bioc-genomicalignments (1.38.2-1) ... 404s Setting up r-cran-bookdown (0.37+dfsg-1) ... 404s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 404s Setting up r-bioc-rtracklayer (1.62.0-1) ... 404s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 404s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 404s Setting up r-bioc-biocsingular (1.18.0+ds-1) ... 404s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 404s Setting up r-bioc-scuttle (1.12.0+dfsg-1) ... 404s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 404s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 404s Setting up r-cran-dt (0.31+dfsg-1) ... 404s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 404s Setting up r-bioc-scater (1.30.1+ds-2) ... 404s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 404s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 404s Setting up r-bioc-scrnaseq (2.16.0+ds-1) ... 404s Setting up autopkgtest-satdep (0) ... 404s Processing triggers for man-db (2.12.0-3) ... 406s Processing triggers for install-info (7.1-3) ... 406s Processing triggers for libc-bin (2.39-0ubuntu2) ... 406s Processing triggers for tex-common (6.18) ... 407s Running updmap-sys. This may take some time... done. 407s Running mktexlsr /var/lib/texmf ... done. 407s Building format(s) --all. 443s This may take some time... done. 458s (Reading database ... 130414 files and directories currently installed.) 458s Removing autopkgtest-satdep (0) ... 459s autopkgtest [17:51:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 459s autopkgtest [17:51:37]: test pkg-r-autopkgtest: [----------------------- 459s Test: Try to load the R library scater 459s 459s R version 4.3.2 (2023-10-31) -- "Eye Holes" 459s Copyright (C) 2023 The R Foundation for Statistical Computing 459s Platform: aarch64-unknown-linux-gnu (64-bit) 459s 459s R is free software and comes with ABSOLUTELY NO WARRANTY. 459s You are welcome to redistribute it under certain conditions. 459s Type 'license()' or 'licence()' for distribution details. 459s 459s R is a collaborative project with many contributors. 459s Type 'contributors()' for more information and 459s 'citation()' on how to cite R or R packages in publications. 459s 459s Type 'demo()' for some demos, 'help()' for on-line help, or 459s 'help.start()' for an HTML browser interface to help. 459s Type 'q()' to quit R. 459s 460s > library('scater') 460s Loading required package: SingleCellExperiment 460s Loading required package: SummarizedExperiment 460s Loading required package: MatrixGenerics 460s Loading required package: matrixStats 460s 460s Attaching package: ‘MatrixGenerics’ 460s 460s The following objects are masked from ‘package:matrixStats’: 460s 460s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 460s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 460s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 460s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 460s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 460s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 460s colWeightedMeans, colWeightedMedians, colWeightedSds, 460s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 460s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 460s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 460s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 460s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 460s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 460s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 460s rowWeightedSds, rowWeightedVars 460s 460s Loading required package: GenomicRanges 460s Loading required package: stats4 460s Loading required package: BiocGenerics 460s 460s Attaching package: ‘BiocGenerics’ 460s 460s The following objects are masked from ‘package:stats’: 460s 460s IQR, mad, sd, var, xtabs 460s 460s The following objects are masked from ‘package:base’: 460s 460s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 460s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 460s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 460s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 460s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 460s table, tapply, union, unique, unsplit, which.max, which.min 460s 460s Loading required package: S4Vectors 461s 461s Attaching package: ‘S4Vectors’ 461s 461s The following object is masked from ‘package:utils’: 461s 461s findMatches 461s 461s The following objects are masked from ‘package:base’: 461s 461s expand.grid, I, unname 461s 461s Loading required package: IRanges 461s Loading required package: GenomeInfoDb 462s Loading required package: Biobase 462s Welcome to Bioconductor 462s 462s Vignettes contain introductory material; view with 462s 'browseVignettes()'. To cite Bioconductor, see 462s 'citation("Biobase")', and for packages 'citation("pkgname")'. 462s 462s 462s Attaching package: ‘Biobase’ 462s 462s The following object is masked from ‘package:MatrixGenerics’: 462s 462s rowMedians 462s 462s The following objects are masked from ‘package:matrixStats’: 462s 462s anyMissing, rowMedians 462s 466s Loading required package: scuttle 466s Loading required package: ggplot2 467s > 467s > 467s Other tests are currently unsupported! 467s They will be progressively added. 468s autopkgtest [17:51:46]: test pkg-r-autopkgtest: -----------------------] 468s pkg-r-autopkgtest PASS 468s autopkgtest [17:51:46]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 469s autopkgtest [17:51:47]: @@@@@@@@@@@@@@@@@@@@ summary 469s pkg-r-autopkgtest PASS 543s Creating nova instance adt-noble-arm64-r-bioc-scater-20240316-174357-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...