0s autopkgtest [17:43:30]: starting date and time: 2024-03-16 17:43:30+0000 0s autopkgtest [17:43:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:43:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pppfz0_7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-saturn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-3.secgroup --name adt-noble-arm64-r-bioc-saturn-20240316-174330-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 142s autopkgtest [17:45:52]: testbed dpkg architecture: arm64 143s autopkgtest [17:45:53]: testbed apt version: 2.7.12 143s autopkgtest [17:45:53]: @@@@@@@@@@@@@@@@@@@@ test bed setup 144s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 145s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 146s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 146s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 146s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 146s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 147s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 147s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 147s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 147s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 147s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 147s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 147s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 150s Fetched 9060 kB in 4s (2281 kB/s) 150s Reading package lists... 153s Reading package lists... 153s Building dependency tree... 153s Reading state information... 154s Calculating upgrade... 154s The following packages will be REMOVED: 154s libglib2.0-0 libssl3 154s The following NEW packages will be installed: 154s libglib2.0-0t64 libssl3t64 xdg-user-dirs 154s The following packages have been kept back: 154s curl 154s The following packages will be upgraded: 154s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 154s ubuntu-minimal ubuntu-standard 155s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 155s Need to get 4613 kB of archives. 155s After this operation, 211 kB of additional disk space will be used. 155s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 155s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 155s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 155s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 155s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 155s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 155s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 155s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 155s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 155s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 157s Fetched 4613 kB in 1s (5363 kB/s) 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 158s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 158s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 158s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 158s udisks2 depends on libglib2.0-0 (>= 2.77.0). 158s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 158s python3-gi depends on libglib2.0-0 (>= 2.77.0). 158s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 158s netplan.io depends on libglib2.0-0 (>= 2.70.0). 158s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 158s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 158s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 158s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 158s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 158s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 158s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 158s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 158s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 158s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 158s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 158s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 158s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 158s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 158s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 158s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 158s fwupd depends on libglib2.0-0 (>= 2.79.0). 158s bolt depends on libglib2.0-0 (>= 2.56.0). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 158s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 158s Selecting previously unselected package libglib2.0-0t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 158s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 158s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 158s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 158s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 158s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 158s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 158s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 158s wget depends on libssl3 (>= 3.0.0). 158s u-boot-tools depends on libssl3 (>= 3.0.0). 158s tnftp depends on libssl3 (>= 3.0.0). 158s tcpdump depends on libssl3 (>= 3.0.0). 158s systemd-resolved depends on libssl3 (>= 3.0.0). 158s systemd depends on libssl3 (>= 3.0.0). 158s sudo depends on libssl3 (>= 3.0.0). 158s sbsigntool depends on libssl3 (>= 3.0.0). 158s rsync depends on libssl3 (>= 3.0.0). 158s python3-cryptography depends on libssl3 (>= 3.0.0). 158s openssh-server depends on libssl3 (>= 3.0.10). 158s openssh-client depends on libssl3 (>= 3.0.10). 158s mtd-utils depends on libssl3 (>= 3.0.0). 158s mokutil depends on libssl3 (>= 3.0.0). 158s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 158s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 158s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 158s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 158s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 158s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 158s libnvme1 depends on libssl3 (>= 3.0.0). 158s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 158s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 158s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 158s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 158s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 158s kmod depends on libssl3 (>= 3.0.0). 158s dhcpcd-base depends on libssl3 (>= 3.0.0). 158s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 158s 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 158s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 158s Selecting previously unselected package libssl3t64:arm64. 158s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 158s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 158s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 159s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 159s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 159s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 159s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 159s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 159s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 159s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 159s Unpacking ubuntu-minimal (1.536) over (1.535) ... 159s Selecting previously unselected package xdg-user-dirs. 159s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 159s Unpacking xdg-user-dirs (0.18-1) ... 159s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 159s Unpacking ubuntu-standard (1.536) over (1.535) ... 159s Setting up ubuntu-minimal (1.536) ... 159s Setting up xdg-user-dirs (0.18-1) ... 159s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 159s Setting up libtirpc-common (1.3.4+ds-1.1) ... 159s Setting up ubuntu-standard (1.536) ... 159s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 159s No schema files found: doing nothing. 159s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 159s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 159s Setting up openssl (3.0.13-0ubuntu1) ... 159s Setting up readline-common (8.2-3.1) ... 159s Processing triggers for man-db (2.12.0-3) ... 160s Processing triggers for install-info (7.1-3) ... 160s Processing triggers for libc-bin (2.39-0ubuntu2) ... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 162s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 162s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 162s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 162s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 162s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 164s Reading package lists... 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 165s Calculating upgrade... 165s The following packages have been kept back: 165s curl 165s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 165s Reading package lists... 166s Building dependency tree... 166s Reading state information... 166s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 171s autopkgtest [17:46:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 172s autopkgtest [17:46:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-saturn 175s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (dsc) [2221 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (tar) [2943 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-saturn 1.10.0+dfsg-1 (diff) [5364 B] 175s gpgv: Signature made Thu Nov 30 14:05:38 2023 UTC 175s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 175s gpgv: issuer "tillea@rki.de" 175s gpgv: Can't check signature: No public key 175s dpkg-source: warning: cannot verify inline signature for ./r-bioc-saturn_1.10.0+dfsg-1.dsc: no acceptable signature found 176s autopkgtest [17:46:26]: testing package r-bioc-saturn version 1.10.0+dfsg-1 176s autopkgtest [17:46:26]: build not needed 177s autopkgtest [17:46:27]: test pkg-r-autopkgtest: preparing testbed 178s Reading package lists... 179s Building dependency tree... 179s Reading state information... 179s Starting pkgProblemResolver with broken count: 0 179s Starting 2 pkgProblemResolver with broken count: 0 179s Done 180s The following additional packages will be installed: 180s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 180s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 180s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 180s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 180s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 180s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 180s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 180s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 180s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 180s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 180s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 180s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 180s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 180s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 180s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 180s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 180s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 180s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 180s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 180s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 180s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 180s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 180s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 180s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 180s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 180s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 180s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 180s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 180s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 180s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 180s r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationfilter 180s r-bioc-annotationhub r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 180s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biocversion 180s r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray r-bioc-deseq2 180s r-bioc-dexseq r-bioc-edger r-bioc-ensembldb r-bioc-genefilter 180s r-bioc-geneplotter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 180s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 180s r-bioc-interactivedisplaybase r-bioc-iranges r-bioc-keggrest r-bioc-limma 180s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 180s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-saturn 180s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 180s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 180s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 180s r-cran-bookdown r-cran-boot r-cran-brio r-cran-bslib r-cran-cachem 180s r-cran-callr r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark 180s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 180s r-cran-dbi r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest 180s r-cran-dplyr r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi 180s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 180s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 180s r-cran-generics r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-highr 180s r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 180s r-cran-hwriter r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 180s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 180s r-cran-lifecycle r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr 180s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 180s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply 180s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 180s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 180s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 180s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 180s r-cran-rcpparmadillo r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rex 180s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite 180s r-cran-sass r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools 180s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 180s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 180s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr 180s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 180s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 180s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 180s Suggested packages: 180s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 180s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 180s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 180s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 180s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 180s libboost-context1.83-dev libboost-contract1.83-dev 180s libboost-coroutine1.83-dev libboost-date-time1.83-dev 180s libboost-exception1.83-dev libboost-fiber1.83-dev 180s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 180s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 180s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 180s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 180s libboost-numpy1.83-dev libboost-program-options1.83-dev 180s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 180s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 180s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 180s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 180s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 180s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 180s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 180s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 180s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 180s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 180s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 180s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 180s r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph 180s r-bioc-variantannotation r-bioc-experimenthub r-bioc-all r-bioc-affy 180s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-shortread 180s r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr 180s r-bioc-bsgenome r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 180s r-cran-pheatmap r-bioc-tximport r-bioc-tximeta r-bioc-tximportdata 180s r-cran-readr r-bioc-glmgampoi r-cran-roxygen2 r-bioc-rhdf5 180s r-cran-seuratobject r-bioc-ggbio r-bioc-gviz r-cran-class r-cran-r.utils 180s r-cran-markdown r-cran-biasedurn r-cran-ellipse r-cran-gplots 180s r-bioc-sparsematrixstats r-cran-ff r-cran-spelling r-cran-kernsmooth 180s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-jpeg 180s r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 180s r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam 180s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 180s r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-rmpi 180s r-cran-rlecuyer r-cran-bench r-cran-here r-cran-plm r-cran-zoo debhelper 180s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 180s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 180s Recommended packages: 180s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 180s r-recommended r-doc-html r-cran-remotes r-cran-downlit r-cran-rstudioapi 180s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 180s r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-whoami r-cran-bench 180s r-cran-decor r-cran-lobstr r-cran-spelling r-cran-webutils 180s r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql r-cran-future w3m 180s | www-browser r-cran-unitizer r-cran-rsvg r-cran-hexbin r-cran-hmisc 180s r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg 180s r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-cairo 180s r-cran-markdown r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-gridsvg 180s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 180s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 180s r-cran-sodium r-cran-future.apply r-cran-lubridate r-cran-mathjaxr 180s r-cran-mockr r-cran-webfakes r-cran-pingr r-cran-runit r-cran-usethis 180s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 180s r-cran-data.table r-cran-formattable r-cran-pkgdown r-cran-zeallot 180s r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl 180s libx11-protocol-perl x11-utils x11-xserver-utils 181s The following packages will be REMOVED: 181s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 181s The following NEW packages will be installed: 181s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 181s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 181s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 181s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 181s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 181s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 181s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 181s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 181s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 181s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 181s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 181s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 181s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 181s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 181s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 181s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 181s libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 181s libjs-popper.js libjs-prettify libjs-sifter.js 181s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 181s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 181s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 181s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 181s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 181s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 181s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 181s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 181s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 181s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 181s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 181s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 181s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 181s r-bioc-annotationfilter r-bioc-annotationhub r-bioc-biobase 181s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 181s r-bioc-biocstyle r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 181s r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 181s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 181s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 181s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 181s r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics r-bioc-protgenerics 181s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 181s r-bioc-s4vectors r-bioc-saturn r-bioc-sparsearray 181s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 181s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 181s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-boot 181s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 181s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 181s r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-dbi 181s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 181s r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 181s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 181s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 181s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 181s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter r-cran-isoband 181s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 181s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 181s r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass 181s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 181s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 181s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 181s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 181s r-cran-progress r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 181s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 181s r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson 181s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass 181s r-cran-scales r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod 181s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat 181s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 181s r-cran-vctrs r-cran-viridislite r-cran-waldo r-cran-withr r-cran-xfun 181s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 181s tex-common texlive-base texlive-bibtex-extra texlive-binaries 181s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 181s The following packages will be upgraded: 181s curl 181s 1 upgraded, 335 newly installed, 5 to remove and 0 not upgraded. 181s Need to get 462 MB/462 MB of archives. 181s After this operation, 1409 MB of additional disk space will be used. 181s Get:1 /tmp/autopkgtest.ipBugo/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [804 B] 181s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 181s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 181s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 181s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 181s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 181s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 181s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 181s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 181s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 181s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 181s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 181s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 181s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 181s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 181s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 181s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 182s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 182s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 182s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 182s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 182s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 182s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 182s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 182s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 182s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 182s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 182s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 182s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 182s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 182s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 183s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 183s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 183s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 183s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 183s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 183s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 183s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 183s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 183s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 183s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 183s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 183s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 183s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 183s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 183s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 183s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 183s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 183s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 183s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 183s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 183s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 183s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 184s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 184s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 184s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 184s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 184s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 184s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 184s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 184s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 184s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 184s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 184s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 184s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 184s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 184s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 184s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 184s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 184s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 184s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 184s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 184s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 184s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 184s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 184s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 184s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 184s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 185s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 185s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 185s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 185s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 185s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 185s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 185s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 185s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 185s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 185s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 185s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 185s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 185s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 185s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 185s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 185s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 185s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 185s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 185s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 185s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 185s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 185s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 185s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 185s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 185s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 185s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 185s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 185s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 185s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 185s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 185s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 185s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 185s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 185s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 185s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 185s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 185s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 186s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 186s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 186s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 186s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 186s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 186s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 186s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 186s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 186s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 186s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 186s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 186s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 186s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 186s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 186s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 186s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 186s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 186s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 186s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 186s Get:135 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 186s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 186s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 186s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 186s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 186s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 186s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 186s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 186s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 186s Get:144 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 187s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 187s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 187s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 187s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 187s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 187s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 187s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 188s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 188s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 188s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 188s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 188s Get:156 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 188s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 188s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 188s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 188s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 188s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 188s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 188s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 188s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 188s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 188s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 188s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 188s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 188s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 188s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 188s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 188s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 188s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 188s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 188s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 188s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 188s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 188s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 188s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 188s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 188s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 188s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 188s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 188s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 188s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 188s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 188s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 188s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 189s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 189s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 189s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 189s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 189s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 189s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 190s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 190s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 190s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 190s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 190s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 190s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 190s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 190s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 190s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 190s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 190s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 190s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 190s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 191s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 191s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 191s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 191s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 191s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 191s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 191s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 191s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 191s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 191s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 191s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 191s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 191s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 191s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 191s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 191s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 191s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 191s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 191s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 191s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 191s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 191s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 191s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 191s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 191s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 191s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 191s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 191s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 191s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 191s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 191s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 191s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 191s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 191s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 191s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 191s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 191s Get:244 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 192s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 192s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 192s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 192s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 192s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 192s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 192s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 192s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 192s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 192s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 192s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 192s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 192s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 192s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 192s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 192s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 192s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 192s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 192s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 192s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 192s Get:265 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 192s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 192s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 193s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 193s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 196s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 196s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 196s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 196s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 196s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 196s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 196s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 196s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 196s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 196s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 196s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 196s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 196s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 196s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 196s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 196s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 196s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 196s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 196s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 196s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 196s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 196s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 197s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 197s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 197s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 197s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 197s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 197s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 197s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 197s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 197s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 197s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 197s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 197s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 197s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 197s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 198s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 198s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 198s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 198s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 198s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 198s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 198s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 198s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 198s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 198s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 198s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 198s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 198s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfdr all 1.1-8-2 [306 kB] 198s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 198s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 198s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-saturn all 1.10.0+dfsg-1 [2954 kB] 198s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 198s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 198s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 198s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 198s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 198s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 198s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 198s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 198s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 199s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 199s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 199s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 199s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 199s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 199s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 204s Preconfiguring packages ... 205s Fetched 462 MB in 18s (25.7 MB/s) 205s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 205s wget depends on libpsl5 (>= 0.16.0). 205s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 205s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 205s 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 205s Removing libpsl5:arm64 (0.21.2-1build1) ... 205s Selecting previously unselected package libpsl5t64:arm64. 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 205s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 205s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 206s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 206s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 206s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 206s Selecting previously unselected package libcurl4t64:arm64. 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 206s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 206s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 206s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 206s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 206s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 206s 206s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 206s Removing libpng16-16:arm64 (1.6.43-1) ... 207s Selecting previously unselected package libpng16-16t64:arm64. 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 207s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 207s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 207s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 207s parted depends on libreadline8 (>= 6.0). 207s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 207s gpgsm depends on libreadline8 (>= 6.0). 207s gpgconf depends on libreadline8 (>= 6.0). 207s gpg depends on libreadline8 (>= 6.0). 207s gawk depends on libreadline8 (>= 6.0). 207s fdisk depends on libreadline8 (>= 6.0). 207s 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 207s Removing libreadline8:arm64 (8.2-3) ... 208s Selecting previously unselected package libreadline8t64:arm64. 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 208s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 208s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 208s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 208s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 208s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 208s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 208s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 208s lsof depends on libtirpc3 (>= 1.0.2). 208s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 208s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 208s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 208s iproute2 depends on libtirpc3 (>= 1.0.2). 208s 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 208s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 208s Selecting previously unselected package libtirpc3t64:arm64. 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 208s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 209s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 209s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 209s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 209s Selecting previously unselected package libc-dev-bin. 209s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 209s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 209s Selecting previously unselected package linux-libc-dev:arm64. 209s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 209s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 209s Selecting previously unselected package libcrypt-dev:arm64. 210s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 210s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 210s Selecting previously unselected package libtirpc-dev:arm64. 210s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 210s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 211s Selecting previously unselected package libnsl-dev:arm64. 211s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 211s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 211s Selecting previously unselected package rpcsvc-proto. 212s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 212s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 212s Selecting previously unselected package libc6-dev:arm64. 213s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 213s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 213s Selecting previously unselected package libisl23:arm64. 213s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 213s Unpacking libisl23:arm64 (0.26-3) ... 213s Selecting previously unselected package libmpc3:arm64. 214s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 214s Unpacking libmpc3:arm64 (1.3.1-1) ... 214s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 214s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 214s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 214s Selecting previously unselected package cpp-13. 215s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 215s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 215s Selecting previously unselected package cpp-aarch64-linux-gnu. 216s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 216s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package cpp. 220s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking cpp (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package libcc1-0:arm64. 224s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libgomp1:arm64. 226s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 226s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 226s Selecting previously unselected package libitm1:arm64. 226s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 226s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 226s Selecting previously unselected package libatomic1:arm64. 226s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 226s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 226s Selecting previously unselected package libasan8:arm64. 227s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 227s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 227s Selecting previously unselected package liblsan0:arm64. 227s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 227s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 227s Selecting previously unselected package libtsan2:arm64. 227s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 227s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 227s Selecting previously unselected package libubsan1:arm64. 227s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 227s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 227s Selecting previously unselected package libhwasan0:arm64. 227s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 227s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 227s Selecting previously unselected package libgcc-13-dev:arm64. 228s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 228s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 228s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 228s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 228s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 228s Selecting previously unselected package gcc-13. 228s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 228s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 228s Selecting previously unselected package gcc-aarch64-linux-gnu. 228s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 228s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package gcc. 229s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 229s Unpacking gcc (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package libstdc++-13-dev:arm64. 229s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 229s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 229s Selecting previously unselected package g++-13-aarch64-linux-gnu. 229s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 229s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 229s Selecting previously unselected package g++-13. 229s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 229s Unpacking g++-13 (13.2.0-17ubuntu2) ... 229s Selecting previously unselected package g++-aarch64-linux-gnu. 229s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 229s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package g++. 229s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 229s Unpacking g++ (4:13.2.0-7ubuntu1) ... 229s Selecting previously unselected package build-essential. 229s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 229s Unpacking build-essential (12.10ubuntu1) ... 229s Selecting previously unselected package dctrl-tools. 229s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 229s Unpacking dctrl-tools (2.24-3build2) ... 229s Selecting previously unselected package fonts-dejavu-mono. 229s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 229s Unpacking fonts-dejavu-mono (2.37-8) ... 229s Selecting previously unselected package fonts-dejavu-core. 229s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 230s Unpacking fonts-dejavu-core (2.37-8) ... 230s Selecting previously unselected package fontconfig-config. 230s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 230s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 230s Selecting previously unselected package libfontconfig1:arm64. 230s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 230s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 230s Selecting previously unselected package fontconfig. 230s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 230s Unpacking fontconfig (2.15.0-1ubuntu1) ... 230s Selecting previously unselected package fonts-font-awesome. 230s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 230s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 230s Selecting previously unselected package fonts-glyphicons-halflings. 230s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 230s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 230s Selecting previously unselected package fonts-lmodern. 230s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 230s Unpacking fonts-lmodern (2.005-1) ... 230s Selecting previously unselected package fonts-mathjax. 230s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 230s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 230s Selecting previously unselected package libgfortran5:arm64. 230s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 230s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 230s Selecting previously unselected package libgfortran-13-dev:arm64. 230s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 230s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 230s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 230s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 231s Selecting previously unselected package gfortran-13. 231s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 231s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 231s Selecting previously unselected package gfortran-aarch64-linux-gnu. 231s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 231s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 231s Selecting previously unselected package gfortran. 231s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 231s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 231s Selecting previously unselected package icu-devtools. 231s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 231s Unpacking icu-devtools (74.2-1ubuntu1) ... 231s Selecting previously unselected package javascript-common. 231s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 231s Unpacking javascript-common (11+nmu1) ... 231s Selecting previously unselected package libio-string-perl. 231s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 231s Unpacking libio-string-perl (1.08-4) ... 231s Selecting previously unselected package liblatex-tounicode-perl. 231s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 231s Unpacking liblatex-tounicode-perl (0.54-2) ... 231s Selecting previously unselected package libbibtex-parser-perl. 231s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 231s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 231s Selecting previously unselected package libblas3:arm64. 231s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 231s Unpacking libblas3:arm64 (3.12.0-3) ... 231s Selecting previously unselected package libblas-dev:arm64. 231s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 231s Unpacking libblas-dev:arm64 (3.12.0-3) ... 231s Selecting previously unselected package libboost1.83-dev:arm64. 231s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 231s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 233s Selecting previously unselected package libboost-dev:arm64. 233s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 233s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 233s Selecting previously unselected package libbz2-dev:arm64. 233s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 233s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 233s Selecting previously unselected package libpixman-1-0:arm64. 233s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 233s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 233s Selecting previously unselected package libxcb-render0:arm64. 233s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 233s Unpacking libxcb-render0:arm64 (1.15-1) ... 233s Selecting previously unselected package libxcb-shm0:arm64. 233s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 233s Unpacking libxcb-shm0:arm64 (1.15-1) ... 233s Selecting previously unselected package libxrender1:arm64. 233s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 233s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 233s Selecting previously unselected package libcairo2:arm64. 233s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 233s Unpacking libcairo2:arm64 (1.18.0-1) ... 233s Selecting previously unselected package libdatrie1:arm64. 233s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 233s Unpacking libdatrie1:arm64 (0.2.13-3) ... 233s Selecting previously unselected package libdeflate0:arm64. 233s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 233s Unpacking libdeflate0:arm64 (1.19-1) ... 233s Selecting previously unselected package libgraphite2-3:arm64. 233s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 233s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 233s Selecting previously unselected package libharfbuzz0b:arm64. 233s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 233s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 233s Selecting previously unselected package x11-common. 234s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 234s Unpacking x11-common (1:7.7+23ubuntu2) ... 234s Selecting previously unselected package libice6:arm64. 234s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 234s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 234s Selecting previously unselected package libicu-dev:arm64. 234s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 234s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 234s Selecting previously unselected package libjpeg-turbo8:arm64. 234s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 234s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 234s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 234s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 234s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 234s Selecting previously unselected package libjpeg8:arm64. 234s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 234s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 234s Selecting previously unselected package libjpeg8-dev:arm64. 235s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 235s Selecting previously unselected package libjpeg-dev:arm64. 235s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 235s Selecting previously unselected package libjs-bootstrap. 235s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 235s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 235s Selecting previously unselected package libjs-popper.js. 235s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 235s Unpacking libjs-popper.js (1.16.1+ds-6) ... 235s Selecting previously unselected package libjs-bootstrap4. 235s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 235s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 235s Selecting previously unselected package libjs-d3. 235s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 235s Unpacking libjs-d3 (3.5.17-4) ... 235s Selecting previously unselected package libjs-es5-shim. 235s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 235s Unpacking libjs-es5-shim (4.6.7-2) ... 235s Selecting previously unselected package libjs-highlight.js. 235s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 235s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 236s Selecting previously unselected package libjs-jquery. 236s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 236s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 236s Selecting previously unselected package libjs-jquery-datatables. 236s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 236s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 236s Selecting previously unselected package libjs-jquery-datatables-extensions. 236s Preparing to unpack .../085-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 236s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 236s Selecting previously unselected package libjs-sifter.js. 236s Preparing to unpack .../086-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 236s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 236s Selecting previously unselected package libjs-microplugin.js. 236s Preparing to unpack .../087-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 236s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-selectize.js. 236s Preparing to unpack .../088-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 236s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-ui. 236s Preparing to unpack .../089-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 236s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 237s Selecting previously unselected package libjs-json. 237s Preparing to unpack .../090-libjs-json_0~20221030+~1.0.8-1_all.deb ... 237s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 237s Selecting previously unselected package libjs-lunr. 237s Preparing to unpack .../091-libjs-lunr_2.3.9~dfsg-2_all.deb ... 237s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 237s Selecting previously unselected package libjs-prettify. 237s Preparing to unpack .../092-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 237s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 237s Selecting previously unselected package libkpathsea6:arm64. 237s Preparing to unpack .../093-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 237s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 237s Selecting previously unselected package liblapack3:arm64. 237s Preparing to unpack .../094-liblapack3_3.12.0-3_arm64.deb ... 237s Unpacking liblapack3:arm64 (3.12.0-3) ... 237s Selecting previously unselected package liblapack-dev:arm64. 237s Preparing to unpack .../095-liblapack-dev_3.12.0-3_arm64.deb ... 237s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 237s Selecting previously unselected package liblerc4:arm64. 237s Preparing to unpack .../096-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 237s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 237s Selecting previously unselected package liblua5.4-0:arm64. 238s Preparing to unpack .../097-liblua5.4-0_5.4.6-3_arm64.deb ... 238s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 238s Selecting previously unselected package libncurses-dev:arm64. 238s Preparing to unpack .../098-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 238s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 238s Selecting previously unselected package libthai-data. 238s Preparing to unpack .../099-libthai-data_0.1.29-2_all.deb ... 238s Unpacking libthai-data (0.1.29-2) ... 238s Selecting previously unselected package libthai0:arm64. 238s Preparing to unpack .../100-libthai0_0.1.29-2_arm64.deb ... 238s Unpacking libthai0:arm64 (0.1.29-2) ... 238s Selecting previously unselected package libpango-1.0-0:arm64. 239s Preparing to unpack .../101-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 239s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 239s Selecting previously unselected package libpangoft2-1.0-0:arm64. 239s Preparing to unpack .../102-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 239s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 239s Selecting previously unselected package libpangocairo-1.0-0:arm64. 239s Preparing to unpack .../103-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 239s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 239s Selecting previously unselected package libpaper1:arm64. 239s Preparing to unpack .../104-libpaper1_1.1.29_arm64.deb ... 239s Unpacking libpaper1:arm64 (1.1.29) ... 239s Selecting previously unselected package libpaper-utils. 239s Preparing to unpack .../105-libpaper-utils_1.1.29_arm64.deb ... 239s Unpacking libpaper-utils (1.1.29) ... 239s Selecting previously unselected package libpcre2-16-0:arm64. 239s Preparing to unpack .../106-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-32-0:arm64. 239s Preparing to unpack .../107-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-posix3:arm64. 239s Preparing to unpack .../108-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-dev:arm64. 239s Preparing to unpack .../109-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpkgconf3:arm64. 239s Preparing to unpack .../110-libpkgconf3_1.8.1-2_arm64.deb ... 239s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 239s Selecting previously unselected package zlib1g-dev:arm64. 239s Preparing to unpack .../111-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 239s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 239s Selecting previously unselected package libpng-dev:arm64. 240s Preparing to unpack .../112-libpng-dev_1.6.43-3_arm64.deb ... 240s Unpacking libpng-dev:arm64 (1.6.43-3) ... 240s Selecting previously unselected package libpotrace0:arm64. 240s Preparing to unpack .../113-libpotrace0_1.16-2_arm64.deb ... 240s Unpacking libpotrace0:arm64 (1.16-2) ... 240s Selecting previously unselected package libptexenc1:arm64. 240s Preparing to unpack .../114-libptexenc1_2023.20230311.66589-9_arm64.deb ... 240s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 240s Selecting previously unselected package libreadline-dev:arm64. 240s Preparing to unpack .../115-libreadline-dev_8.2-3.1_arm64.deb ... 240s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 240s Selecting previously unselected package libsharpyuv0:arm64. 240s Preparing to unpack .../116-libsharpyuv0_1.3.2-0.4_arm64.deb ... 240s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 240s Selecting previously unselected package libsm6:arm64. 240s Preparing to unpack .../117-libsm6_2%3a1.2.3-1build2_arm64.deb ... 240s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 240s Selecting previously unselected package libsynctex2:arm64. 240s Preparing to unpack .../118-libsynctex2_2023.20230311.66589-9_arm64.deb ... 240s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 240s Selecting previously unselected package libtcl8.6:arm64. 240s Preparing to unpack .../119-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 240s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 240s Selecting previously unselected package libteckit0:arm64. 240s Preparing to unpack .../120-libteckit0_2.5.12+ds1-1_arm64.deb ... 240s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 240s Selecting previously unselected package libtexlua53-5:arm64. 240s Preparing to unpack .../121-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 240s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 240s Selecting previously unselected package libjbig0:arm64. 240s Preparing to unpack .../122-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 240s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 240s Selecting previously unselected package libwebp7:arm64. 240s Preparing to unpack .../123-libwebp7_1.3.2-0.4_arm64.deb ... 240s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 241s Selecting previously unselected package libtiff6:arm64. 241s Preparing to unpack .../124-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 241s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 241s Selecting previously unselected package libxft2:arm64. 241s Preparing to unpack .../125-libxft2_2.3.6-1_arm64.deb ... 241s Unpacking libxft2:arm64 (2.3.6-1) ... 241s Selecting previously unselected package libxss1:arm64. 241s Preparing to unpack .../126-libxss1_1%3a1.2.3-1build2_arm64.deb ... 241s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 241s Selecting previously unselected package libtk8.6:arm64. 241s Preparing to unpack .../127-libtk8.6_8.6.13-2_arm64.deb ... 241s Unpacking libtk8.6:arm64 (8.6.13-2) ... 241s Selecting previously unselected package libxt6t64:arm64. 241s Preparing to unpack .../128-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 241s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 241s Selecting previously unselected package libxmu6:arm64. 241s Preparing to unpack .../129-libxmu6_2%3a1.1.3-3_arm64.deb ... 241s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 241s Selecting previously unselected package libxpm4:arm64. 241s Preparing to unpack .../130-libxpm4_1%3a3.5.17-1_arm64.deb ... 241s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 241s Selecting previously unselected package libxaw7:arm64. 241s Preparing to unpack .../131-libxaw7_2%3a1.0.14-1_arm64.deb ... 241s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 241s Selecting previously unselected package libxi6:arm64. 241s Preparing to unpack .../132-libxi6_2%3a1.8.1-1_arm64.deb ... 241s Unpacking libxi6:arm64 (2:1.8.1-1) ... 241s Selecting previously unselected package libzzip-0-13:arm64. 241s Preparing to unpack .../133-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 241s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 241s Selecting previously unselected package zip. 241s Preparing to unpack .../134-zip_3.0-13_arm64.deb ... 241s Unpacking zip (3.0-13) ... 241s Selecting previously unselected package unzip. 241s Preparing to unpack .../135-unzip_6.0-28ubuntu3_arm64.deb ... 241s Unpacking unzip (6.0-28ubuntu3) ... 241s Selecting previously unselected package xdg-utils. 241s Preparing to unpack .../136-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 241s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 241s Selecting previously unselected package r-base-core. 241s Preparing to unpack .../137-r-base-core_4.3.3-2build1_arm64.deb ... 241s Unpacking r-base-core (4.3.3-2build1) ... 242s Selecting previously unselected package r-cran-littler. 242s Preparing to unpack .../138-r-cran-littler_0.3.19-1_arm64.deb ... 242s Unpacking r-cran-littler (0.3.19-1) ... 242s Selecting previously unselected package littler. 242s Preparing to unpack .../139-littler_0.3.19-1_all.deb ... 242s Unpacking littler (0.3.19-1) ... 242s Selecting previously unselected package node-bootstrap-sass. 242s Preparing to unpack .../140-node-bootstrap-sass_3.4.3-2_all.deb ... 242s Unpacking node-bootstrap-sass (3.4.3-2) ... 242s Selecting previously unselected package node-html5shiv. 242s Preparing to unpack .../141-node-html5shiv_3.7.3+dfsg-5_all.deb ... 242s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 242s Selecting previously unselected package node-normalize.css. 243s Preparing to unpack .../142-node-normalize.css_8.0.1-5_all.deb ... 243s Unpacking node-normalize.css (8.0.1-5) ... 243s Selecting previously unselected package pandoc-data. 243s Preparing to unpack .../143-pandoc-data_3.1.3-1_all.deb ... 243s Unpacking pandoc-data (3.1.3-1) ... 243s Selecting previously unselected package pandoc. 243s Preparing to unpack .../144-pandoc_3.1.3+ds-2_arm64.deb ... 243s Unpacking pandoc (3.1.3+ds-2) ... 244s Selecting previously unselected package pkgconf-bin. 244s Preparing to unpack .../145-pkgconf-bin_1.8.1-2_arm64.deb ... 244s Unpacking pkgconf-bin (1.8.1-2) ... 244s Selecting previously unselected package pkgconf:arm64. 244s Preparing to unpack .../146-pkgconf_1.8.1-2_arm64.deb ... 244s Unpacking pkgconf:arm64 (1.8.1-2) ... 244s Selecting previously unselected package pkg-config:arm64. 244s Preparing to unpack .../147-pkg-config_1.8.1-2_arm64.deb ... 244s Unpacking pkg-config:arm64 (1.8.1-2) ... 244s Selecting previously unselected package liblzma-dev:arm64. 244s Preparing to unpack .../148-liblzma-dev_5.4.5-0.3_arm64.deb ... 244s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 244s Selecting previously unselected package r-base-dev. 244s Preparing to unpack .../149-r-base-dev_4.3.3-2build1_all.deb ... 244s Unpacking r-base-dev (4.3.3-2build1) ... 244s Selecting previously unselected package pkg-r-autopkgtest. 244s Preparing to unpack .../150-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 244s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 244s Selecting previously unselected package r-bioc-biocgenerics. 244s Preparing to unpack .../151-r-bioc-biocgenerics_0.48.1-2_all.deb ... 244s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 244s Selecting previously unselected package r-bioc-biobase. 245s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_arm64.deb ... 245s Unpacking r-bioc-biobase (2.62.0-1) ... 245s Selecting previously unselected package r-bioc-s4vectors. 245s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 245s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 245s Selecting previously unselected package r-bioc-iranges. 245s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_arm64.deb ... 245s Unpacking r-bioc-iranges (2.36.0-1) ... 245s Selecting previously unselected package r-cran-dbi. 245s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 245s Unpacking r-cran-dbi (1.2.2-1) ... 245s Selecting previously unselected package r-cran-bit. 245s Preparing to unpack .../156-r-cran-bit_4.0.5-1_arm64.deb ... 245s Unpacking r-cran-bit (4.0.5-1) ... 245s Selecting previously unselected package r-cran-bit64. 245s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_arm64.deb ... 245s Unpacking r-cran-bit64 (4.0.5-1) ... 245s Selecting previously unselected package r-cran-rlang. 245s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_arm64.deb ... 245s Unpacking r-cran-rlang (1.1.3-1) ... 245s Selecting previously unselected package r-cran-cli. 245s Preparing to unpack .../159-r-cran-cli_3.6.2-1_arm64.deb ... 245s Unpacking r-cran-cli (3.6.2-1) ... 245s Selecting previously unselected package r-cran-glue. 245s Preparing to unpack .../160-r-cran-glue_1.7.0-1_arm64.deb ... 245s Unpacking r-cran-glue (1.7.0-1) ... 245s Selecting previously unselected package r-cran-lifecycle. 246s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 246s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 246s Selecting previously unselected package r-cran-vctrs. 246s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_arm64.deb ... 246s Unpacking r-cran-vctrs (0.6.5-1) ... 246s Selecting previously unselected package r-cran-blob. 246s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 246s Unpacking r-cran-blob (1.2.4-1) ... 246s Selecting previously unselected package r-cran-fastmap. 247s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 247s Unpacking r-cran-fastmap (1.1.1-1) ... 247s Selecting previously unselected package r-cran-cachem. 247s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_arm64.deb ... 247s Unpacking r-cran-cachem (1.0.8-1) ... 247s Selecting previously unselected package r-cran-memoise. 248s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 248s Unpacking r-cran-memoise (2.0.1-1) ... 248s Selecting previously unselected package r-cran-pkgconfig. 248s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 248s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 248s Selecting previously unselected package r-cran-plogr. 249s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 249s Unpacking r-cran-plogr (0.2.0-3build1) ... 249s Selecting previously unselected package r-cran-cpp11. 250s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 250s Unpacking r-cran-cpp11 (0.4.7-1) ... 250s Selecting previously unselected package r-cran-rsqlite. 251s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_arm64.deb ... 251s Unpacking r-cran-rsqlite (2.3.4-1) ... 251s Selecting previously unselected package r-cran-curl. 251s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 251s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 251s Selecting previously unselected package r-cran-jsonlite. 252s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 252s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 252s Selecting previously unselected package r-cran-mime. 252s Preparing to unpack .../173-r-cran-mime_0.12-1_arm64.deb ... 252s Unpacking r-cran-mime (0.12-1) ... 252s Selecting previously unselected package r-cran-sys. 252s Preparing to unpack .../174-r-cran-sys_3.4.2-1_arm64.deb ... 252s Unpacking r-cran-sys (3.4.2-1) ... 252s Selecting previously unselected package r-cran-askpass. 252s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_arm64.deb ... 252s Unpacking r-cran-askpass (1.2.0-1) ... 252s Selecting previously unselected package r-cran-openssl. 252s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 252s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 252s Selecting previously unselected package r-cran-r6. 252s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 252s Unpacking r-cran-r6 (2.5.1-1) ... 252s Selecting previously unselected package r-cran-httr. 252s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 252s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 252s Selecting previously unselected package r-cran-png. 252s Preparing to unpack .../179-r-cran-png_0.1-8-1_arm64.deb ... 252s Unpacking r-cran-png (0.1-8-1) ... 252s Selecting previously unselected package r-bioc-zlibbioc. 253s Preparing to unpack .../180-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 253s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 253s Selecting previously unselected package r-bioc-xvector. 253s Preparing to unpack .../181-r-bioc-xvector_0.42.0-1_arm64.deb ... 253s Unpacking r-bioc-xvector (0.42.0-1) ... 253s Selecting previously unselected package r-cran-bitops. 253s Preparing to unpack .../182-r-cran-bitops_1.0-7-1_arm64.deb ... 253s Unpacking r-cran-bitops (1.0-7-1) ... 253s Selecting previously unselected package r-cran-rcurl. 253s Preparing to unpack .../183-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 253s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 253s Selecting previously unselected package r-bioc-genomeinfodbdata. 253s Preparing to unpack .../184-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 253s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 254s Selecting previously unselected package r-bioc-genomeinfodb. 254s Preparing to unpack .../185-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 254s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 254s Selecting previously unselected package r-cran-crayon. 254s Preparing to unpack .../186-r-cran-crayon_1.5.2-1_all.deb ... 254s Unpacking r-cran-crayon (1.5.2-1) ... 254s Selecting previously unselected package r-bioc-biostrings. 254s Preparing to unpack .../187-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 254s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 254s Selecting previously unselected package r-bioc-keggrest. 254s Preparing to unpack .../188-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 254s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 254s Selecting previously unselected package r-bioc-annotationdbi. 254s Preparing to unpack .../189-r-bioc-annotationdbi_1.64.1-1_all.deb ... 254s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 254s Selecting previously unselected package r-cran-xml. 254s Preparing to unpack .../190-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 254s Unpacking r-cran-xml (3.99-0.16.1-1) ... 254s Selecting previously unselected package r-cran-xtable. 254s Preparing to unpack .../191-r-cran-xtable_1%3a1.8-4-2_all.deb ... 254s Unpacking r-cran-xtable (1:1.8-4-2) ... 254s Selecting previously unselected package r-bioc-annotate. 254s Preparing to unpack .../192-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 254s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 255s Selecting previously unselected package r-bioc-genomicranges. 255s Preparing to unpack .../193-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 255s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-lazyeval. 255s Preparing to unpack .../194-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 255s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 255s Selecting previously unselected package r-bioc-annotationfilter. 255s Preparing to unpack .../195-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 255s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 255s Selecting previously unselected package r-cran-generics. 255s Preparing to unpack .../196-r-cran-generics_0.1.3-1_all.deb ... 255s Unpacking r-cran-generics (0.1.3-1) ... 255s Selecting previously unselected package r-cran-magrittr. 255s Preparing to unpack .../197-r-cran-magrittr_2.0.3-1_arm64.deb ... 255s Unpacking r-cran-magrittr (2.0.3-1) ... 255s Selecting previously unselected package r-cran-fansi. 255s Preparing to unpack .../198-r-cran-fansi_1.0.5-1_arm64.deb ... 255s Unpacking r-cran-fansi (1.0.5-1) ... 255s Selecting previously unselected package r-cran-utf8. 255s Preparing to unpack .../199-r-cran-utf8_1.2.4-1_arm64.deb ... 255s Unpacking r-cran-utf8 (1.2.4-1) ... 255s Selecting previously unselected package r-cran-pillar. 255s Preparing to unpack .../200-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 255s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 255s Selecting previously unselected package r-cran-tibble. 255s Preparing to unpack .../201-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 255s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 255s Selecting previously unselected package r-cran-withr. 255s Preparing to unpack .../202-r-cran-withr_2.5.0-1_all.deb ... 255s Unpacking r-cran-withr (2.5.0-1) ... 255s Selecting previously unselected package r-cran-tidyselect. 255s Preparing to unpack .../203-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 255s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 255s Selecting previously unselected package r-cran-dplyr. 255s Preparing to unpack .../204-r-cran-dplyr_1.1.4-1_arm64.deb ... 255s Unpacking r-cran-dplyr (1.1.4-1) ... 255s Selecting previously unselected package r-cran-purrr. 256s Preparing to unpack .../205-r-cran-purrr_1.0.2-1_arm64.deb ... 256s Unpacking r-cran-purrr (1.0.2-1) ... 256s Selecting previously unselected package r-cran-stringi. 256s Preparing to unpack .../206-r-cran-stringi_1.8.3-1_arm64.deb ... 256s Unpacking r-cran-stringi (1.8.3-1) ... 256s Selecting previously unselected package r-cran-stringr. 256s Preparing to unpack .../207-r-cran-stringr_1.5.1-1_all.deb ... 256s Unpacking r-cran-stringr (1.5.1-1) ... 256s Selecting previously unselected package r-cran-tidyr. 256s Preparing to unpack .../208-r-cran-tidyr_1.3.1-1_arm64.deb ... 256s Unpacking r-cran-tidyr (1.3.1-1) ... 256s Selecting previously unselected package r-cran-dbplyr. 256s Preparing to unpack .../209-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 256s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 256s Selecting previously unselected package r-cran-filelock. 256s Preparing to unpack .../210-r-cran-filelock_1.0.3-1_arm64.deb ... 256s Unpacking r-cran-filelock (1.0.3-1) ... 256s Selecting previously unselected package r-bioc-biocfilecache. 256s Preparing to unpack .../211-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 256s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 256s Selecting previously unselected package r-cran-biocmanager. 256s Preparing to unpack .../212-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 256s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 256s Selecting previously unselected package r-bioc-biocversion. 256s Preparing to unpack .../213-r-bioc-biocversion_3.18.1-1_all.deb ... 256s Unpacking r-bioc-biocversion (3.18.1-1) ... 256s Selecting previously unselected package r-cran-rappdirs. 256s Preparing to unpack .../214-r-cran-rappdirs_0.3.3-1_arm64.deb ... 256s Unpacking r-cran-rappdirs (0.3.3-1) ... 256s Selecting previously unselected package r-cran-yaml. 256s Preparing to unpack .../215-r-cran-yaml_2.3.8-1_arm64.deb ... 256s Unpacking r-cran-yaml (2.3.8-1) ... 256s Selecting previously unselected package r-cran-pkgkitten. 257s Preparing to unpack .../216-r-cran-pkgkitten_0.2.3-1_all.deb ... 257s Unpacking r-cran-pkgkitten (0.2.3-1) ... 257s Selecting previously unselected package r-cran-rcpp. 257s Preparing to unpack .../217-r-cran-rcpp_1.0.12-1_arm64.deb ... 257s Unpacking r-cran-rcpp (1.0.12-1) ... 257s Selecting previously unselected package r-cran-later. 257s Preparing to unpack .../218-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 257s Unpacking r-cran-later (1.3.2+dfsg-1) ... 257s Selecting previously unselected package r-cran-promises. 258s Preparing to unpack .../219-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 258s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 258s Selecting previously unselected package r-cran-httpuv. 259s Preparing to unpack .../220-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 259s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 259s Selecting previously unselected package r-cran-base64enc. 262s Preparing to unpack .../221-r-cran-base64enc_0.1-3-3_arm64.deb ... 262s Unpacking r-cran-base64enc (0.1-3-3) ... 262s Selecting previously unselected package r-cran-digest. 262s Preparing to unpack .../222-r-cran-digest_0.6.34-1_arm64.deb ... 262s Unpacking r-cran-digest (0.6.34-1) ... 262s Selecting previously unselected package r-cran-ellipsis. 262s Preparing to unpack .../223-r-cran-ellipsis_0.3.2-2_arm64.deb ... 262s Unpacking r-cran-ellipsis (0.3.2-2) ... 263s Selecting previously unselected package r-cran-htmltools. 263s Preparing to unpack .../224-r-cran-htmltools_0.5.7-1_arm64.deb ... 263s Unpacking r-cran-htmltools (0.5.7-1) ... 263s Selecting previously unselected package r-cran-fontawesome. 263s Preparing to unpack .../225-r-cran-fontawesome_0.5.2-1_all.deb ... 263s Unpacking r-cran-fontawesome (0.5.2-1) ... 263s Selecting previously unselected package r-cran-sourcetools. 263s Preparing to unpack .../226-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 263s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 263s Selecting previously unselected package r-cran-commonmark. 263s Preparing to unpack .../227-r-cran-commonmark_1.9.1-1_arm64.deb ... 263s Unpacking r-cran-commonmark (1.9.1-1) ... 263s Selecting previously unselected package r-cran-jquerylib. 264s Preparing to unpack .../228-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 264s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 264s Selecting previously unselected package r-cran-fs. 264s Preparing to unpack .../229-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 264s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 264s Selecting previously unselected package r-cran-sass. 264s Preparing to unpack .../230-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 264s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 264s Selecting previously unselected package r-cran-bslib. 264s Preparing to unpack .../231-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 264s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 264s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 264s Preparing to unpack .../232-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 264s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 264s Selecting previously unselected package r-cran-shiny. 264s Preparing to unpack .../233-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 264s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 264s Selecting previously unselected package r-cran-evaluate. 264s Preparing to unpack .../234-r-cran-evaluate_0.23-1_all.deb ... 264s Unpacking r-cran-evaluate (0.23-1) ... 264s Selecting previously unselected package r-cran-xfun. 265s Preparing to unpack .../235-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 265s Unpacking r-cran-xfun (0.41+dfsg-1) ... 265s Selecting previously unselected package r-cran-highr. 265s Preparing to unpack .../236-r-cran-highr_0.10+dfsg-1_all.deb ... 265s Unpacking r-cran-highr (0.10+dfsg-1) ... 265s Selecting previously unselected package libjs-mathjax. 265s Preparing to unpack .../237-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 265s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 266s Selecting previously unselected package r-cran-knitr. 266s Preparing to unpack .../238-r-cran-knitr_1.45+dfsg-1_all.deb ... 266s Unpacking r-cran-knitr (1.45+dfsg-1) ... 266s Selecting previously unselected package r-cran-tinytex. 266s Preparing to unpack .../239-r-cran-tinytex_0.49-1_all.deb ... 266s Unpacking r-cran-tinytex (0.49-1) ... 266s Selecting previously unselected package libjs-modernizr. 266s Preparing to unpack .../240-libjs-modernizr_2.6.2+ds1-5_all.deb ... 266s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 266s Selecting previously unselected package r-cran-rmarkdown. 266s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 266s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 266s Selecting previously unselected package r-cran-htmlwidgets. 266s Preparing to unpack .../242-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 266s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 266s Selecting previously unselected package r-cran-crosstalk. 266s Preparing to unpack .../243-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 266s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 266s Selecting previously unselected package r-cran-dt. 266s Preparing to unpack .../244-r-cran-dt_0.31+dfsg-1_all.deb ... 266s Unpacking r-cran-dt (0.31+dfsg-1) ... 266s Selecting previously unselected package r-bioc-interactivedisplaybase. 266s Preparing to unpack .../245-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 266s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 266s Selecting previously unselected package r-bioc-annotationhub. 266s Preparing to unpack .../246-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 266s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 266s Selecting previously unselected package r-bioc-biocio. 266s Preparing to unpack .../247-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 266s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 266s Selecting previously unselected package r-cran-formatr. 266s Preparing to unpack .../248-r-cran-formatr_1.14-1_all.deb ... 266s Unpacking r-cran-formatr (1.14-1) ... 266s Selecting previously unselected package r-cran-lambda.r. 266s Preparing to unpack .../249-r-cran-lambda.r_1.2.4-2build1_all.deb ... 266s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 267s Selecting previously unselected package r-cran-futile.options. 267s Preparing to unpack .../250-r-cran-futile.options_1.0.1-3build1_all.deb ... 267s Unpacking r-cran-futile.options (1.0.1-3build1) ... 267s Selecting previously unselected package r-cran-futile.logger. 267s Preparing to unpack .../251-r-cran-futile.logger_1.4.3-4build1_all.deb ... 267s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 267s Selecting previously unselected package r-cran-snow. 267s Preparing to unpack .../252-r-cran-snow_1%3a0.4.4-2_all.deb ... 267s Unpacking r-cran-snow (1:0.4.4-2) ... 267s Selecting previously unselected package r-cran-codetools. 267s Preparing to unpack .../253-r-cran-codetools_0.2-19-1_all.deb ... 267s Unpacking r-cran-codetools (0.2-19-1) ... 267s Selecting previously unselected package r-cran-bh. 267s Preparing to unpack .../254-r-cran-bh_1.84.0-1_all.deb ... 267s Unpacking r-cran-bh (1.84.0-1) ... 267s Selecting previously unselected package r-bioc-biocparallel. 268s Preparing to unpack .../255-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 268s Unpacking r-bioc-biocparallel (1.36.0-1) ... 268s Selecting previously unselected package r-cran-bookdown. 268s Preparing to unpack .../256-r-cran-bookdown_0.37+dfsg-1_all.deb ... 268s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 268s Selecting previously unselected package tex-common. 268s Preparing to unpack .../257-tex-common_6.18_all.deb ... 268s Unpacking tex-common (6.18) ... 268s Selecting previously unselected package t1utils. 268s Preparing to unpack .../258-t1utils_1.41-4build2_arm64.deb ... 268s Unpacking t1utils (1.41-4build2) ... 268s Selecting previously unselected package texlive-binaries. 268s Preparing to unpack .../259-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 268s Unpacking texlive-binaries (2023.20230311.66589-9) ... 269s Selecting previously unselected package texlive-base. 269s Preparing to unpack .../260-texlive-base_2023.20240207-1_all.deb ... 269s Unpacking texlive-base (2023.20240207-1) ... 270s Selecting previously unselected package texlive-latex-base. 270s Preparing to unpack .../261-texlive-latex-base_2023.20240207-1_all.deb ... 270s Unpacking texlive-latex-base (2023.20240207-1) ... 270s Selecting previously unselected package texlive-bibtex-extra. 271s Preparing to unpack .../262-texlive-bibtex-extra_2023.20240207-1_all.deb ... 271s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 273s Selecting previously unselected package r-bioc-biocstyle. 273s Preparing to unpack .../263-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 273s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 273s Selecting previously unselected package r-cran-hms. 273s Preparing to unpack .../264-r-cran-hms_1.1.3-1_all.deb ... 273s Unpacking r-cran-hms (1.1.3-1) ... 273s Selecting previously unselected package r-cran-prettyunits. 274s Preparing to unpack .../265-r-cran-prettyunits_1.2.0-1_all.deb ... 274s Unpacking r-cran-prettyunits (1.2.0-1) ... 274s Selecting previously unselected package r-cran-progress. 274s Preparing to unpack .../266-r-cran-progress_1.2.3-1_all.deb ... 274s Unpacking r-cran-progress (1.2.3-1) ... 274s Selecting previously unselected package r-cran-xml2. 274s Preparing to unpack .../267-r-cran-xml2_1.3.6-1_arm64.deb ... 274s Unpacking r-cran-xml2 (1.3.6-1) ... 274s Selecting previously unselected package r-bioc-biomart. 274s Preparing to unpack .../268-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 274s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 274s Selecting previously unselected package r-cran-lattice. 274s Preparing to unpack .../269-r-cran-lattice_0.22-5-1_arm64.deb ... 274s Unpacking r-cran-lattice (0.22-5-1) ... 274s Selecting previously unselected package r-cran-matrix. 274s Preparing to unpack .../270-r-cran-matrix_1.6-5-1_arm64.deb ... 274s Unpacking r-cran-matrix (1.6-5-1) ... 274s Selecting previously unselected package r-cran-matrixstats. 274s Preparing to unpack .../271-r-cran-matrixstats_1.2.0-1_arm64.deb ... 274s Unpacking r-cran-matrixstats (1.2.0-1) ... 274s Selecting previously unselected package r-bioc-matrixgenerics. 274s Preparing to unpack .../272-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 274s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 274s Selecting previously unselected package r-cran-abind. 274s Preparing to unpack .../273-r-cran-abind_1.4-5-2_all.deb ... 274s Unpacking r-cran-abind (1.4-5-2) ... 274s Selecting previously unselected package r-bioc-s4arrays. 274s Preparing to unpack .../274-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 274s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 274s Selecting previously unselected package r-bioc-sparsearray. 274s Preparing to unpack .../275-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 274s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 274s Selecting previously unselected package r-bioc-delayedarray. 274s Preparing to unpack .../276-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 274s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 274s Selecting previously unselected package r-bioc-summarizedexperiment. 274s Preparing to unpack .../277-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 274s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 274s Selecting previously unselected package r-cran-locfit. 274s Preparing to unpack .../278-r-cran-locfit_1.5-9.8-1_arm64.deb ... 274s Unpacking r-cran-locfit (1.5-9.8-1) ... 275s Selecting previously unselected package r-cran-gtable. 275s Preparing to unpack .../279-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 275s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 275s Selecting previously unselected package r-cran-isoband. 275s Preparing to unpack .../280-r-cran-isoband_0.2.7-1_arm64.deb ... 275s Unpacking r-cran-isoband (0.2.7-1) ... 275s Selecting previously unselected package r-cran-mass. 275s Preparing to unpack .../281-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 275s Unpacking r-cran-mass (7.3-60.0.1-1) ... 275s Selecting previously unselected package r-cran-nlme. 275s Preparing to unpack .../282-r-cran-nlme_3.1.164-1_arm64.deb ... 275s Unpacking r-cran-nlme (3.1.164-1) ... 275s Selecting previously unselected package r-cran-mgcv. 275s Preparing to unpack .../283-r-cran-mgcv_1.9-1-1_arm64.deb ... 275s Unpacking r-cran-mgcv (1.9-1-1) ... 275s Selecting previously unselected package r-cran-farver. 275s Preparing to unpack .../284-r-cran-farver_2.1.1-1_arm64.deb ... 275s Unpacking r-cran-farver (2.1.1-1) ... 276s Selecting previously unselected package r-cran-labeling. 276s Preparing to unpack .../285-r-cran-labeling_0.4.3-1_all.deb ... 276s Unpacking r-cran-labeling (0.4.3-1) ... 276s Selecting previously unselected package r-cran-colorspace. 276s Preparing to unpack .../286-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 276s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 276s Selecting previously unselected package r-cran-munsell. 276s Preparing to unpack .../287-r-cran-munsell_0.5.0-2build1_all.deb ... 276s Unpacking r-cran-munsell (0.5.0-2build1) ... 276s Selecting previously unselected package r-cran-rcolorbrewer. 276s Preparing to unpack .../288-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 276s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 276s Selecting previously unselected package r-cran-viridislite. 276s Preparing to unpack .../289-r-cran-viridislite_0.4.2-2_all.deb ... 276s Unpacking r-cran-viridislite (0.4.2-2) ... 276s Selecting previously unselected package r-cran-scales. 276s Preparing to unpack .../290-r-cran-scales_1.3.0-1_all.deb ... 276s Unpacking r-cran-scales (1.3.0-1) ... 276s Selecting previously unselected package r-cran-ggplot2. 276s Preparing to unpack .../291-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 276s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 276s Selecting previously unselected package r-cran-rcpparmadillo. 276s Preparing to unpack .../292-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 276s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 276s Selecting previously unselected package r-bioc-deseq2. 276s Preparing to unpack .../293-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 276s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 276s Selecting previously unselected package r-cran-hwriter. 276s Preparing to unpack .../294-r-cran-hwriter_1.3.2.1-1_all.deb ... 276s Unpacking r-cran-hwriter (1.3.2.1-1) ... 276s Selecting previously unselected package r-bioc-rhtslib. 276s Preparing to unpack .../295-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 276s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 276s Selecting previously unselected package r-bioc-rsamtools. 277s Preparing to unpack .../296-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 277s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 277s Selecting previously unselected package r-cran-statmod. 277s Preparing to unpack .../297-r-cran-statmod_1.5.0-1_arm64.deb ... 277s Unpacking r-cran-statmod (1.5.0-1) ... 277s Selecting previously unselected package r-bioc-geneplotter. 277s Preparing to unpack .../298-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 277s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 277s Selecting previously unselected package r-cran-survival. 277s Preparing to unpack .../299-r-cran-survival_3.5-8-1_arm64.deb ... 277s Unpacking r-cran-survival (3.5-8-1) ... 277s Selecting previously unselected package r-bioc-genefilter. 277s Preparing to unpack .../300-r-bioc-genefilter_1.84.0-1_arm64.deb ... 277s Unpacking r-bioc-genefilter (1.84.0-1) ... 277s Selecting previously unselected package r-bioc-dexseq. 277s Preparing to unpack .../301-r-bioc-dexseq_1.48.0+dfsg-1_all.deb ... 277s Unpacking r-bioc-dexseq (1.48.0+dfsg-1) ... 277s Selecting previously unselected package r-bioc-limma. 277s Preparing to unpack .../302-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 277s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 277s Selecting previously unselected package r-bioc-edger. 277s Preparing to unpack .../303-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 277s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 278s Selecting previously unselected package r-bioc-genomicalignments. 278s Preparing to unpack .../304-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 278s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 278s Selecting previously unselected package r-cran-rjson. 278s Preparing to unpack .../305-r-cran-rjson_0.2.21-1_arm64.deb ... 278s Unpacking r-cran-rjson (0.2.21-1) ... 278s Selecting previously unselected package r-cran-restfulr. 278s Preparing to unpack .../306-r-cran-restfulr_0.0.15-1_arm64.deb ... 278s Unpacking r-cran-restfulr (0.0.15-1) ... 278s Selecting previously unselected package r-bioc-rtracklayer. 278s Preparing to unpack .../307-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 278s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 278s Selecting previously unselected package r-bioc-genomicfeatures. 278s Preparing to unpack .../308-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 278s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 278s Selecting previously unselected package r-bioc-protgenerics. 278s Preparing to unpack .../309-r-bioc-protgenerics_1.34.0-1_all.deb ... 278s Unpacking r-bioc-protgenerics (1.34.0-1) ... 278s Selecting previously unselected package r-bioc-ensembldb. 278s Preparing to unpack .../310-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 278s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 278s Selecting previously unselected package r-cran-locfdr. 278s Preparing to unpack .../311-r-cran-locfdr_1.1-8-2_all.deb ... 278s Unpacking r-cran-locfdr (1.1-8-2) ... 278s Selecting previously unselected package r-cran-pbapply. 278s Preparing to unpack .../312-r-cran-pbapply_1.7-2-1_all.deb ... 278s Unpacking r-cran-pbapply (1.7-2-1) ... 278s Selecting previously unselected package r-cran-boot. 278s Preparing to unpack .../313-r-cran-boot_1.3-30-1_all.deb ... 278s Unpacking r-cran-boot (1.3-30-1) ... 278s Selecting previously unselected package r-bioc-saturn. 278s Preparing to unpack .../314-r-bioc-saturn_1.10.0+dfsg-1_all.deb ... 278s Unpacking r-bioc-saturn (1.10.0+dfsg-1) ... 278s Selecting previously unselected package r-cran-brio. 279s Preparing to unpack .../315-r-cran-brio_1.1.4-1_arm64.deb ... 279s Unpacking r-cran-brio (1.1.4-1) ... 279s Selecting previously unselected package r-cran-ps. 279s Preparing to unpack .../316-r-cran-ps_1.7.6-1_arm64.deb ... 279s Unpacking r-cran-ps (1.7.6-1) ... 279s Selecting previously unselected package r-cran-processx. 279s Preparing to unpack .../317-r-cran-processx_3.8.3-1_arm64.deb ... 279s Unpacking r-cran-processx (3.8.3-1) ... 279s Selecting previously unselected package r-cran-callr. 279s Preparing to unpack .../318-r-cran-callr_3.7.3-2_all.deb ... 279s Unpacking r-cran-callr (3.7.3-2) ... 279s Selecting previously unselected package r-cran-rex. 279s Preparing to unpack .../319-r-cran-rex_1.2.1-1_all.deb ... 279s Unpacking r-cran-rex (1.2.1-1) ... 279s Selecting previously unselected package r-cran-covr. 280s Preparing to unpack .../320-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 280s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 280s Selecting previously unselected package r-cran-desc. 280s Preparing to unpack .../321-r-cran-desc_1.4.3-1_all.deb ... 280s Unpacking r-cran-desc (1.4.3-1) ... 280s Selecting previously unselected package r-cran-diffobj. 280s Preparing to unpack .../322-r-cran-diffobj_0.3.5-1_arm64.deb ... 280s Unpacking r-cran-diffobj (0.3.5-1) ... 280s Selecting previously unselected package r-cran-pkgbuild. 280s Preparing to unpack .../323-r-cran-pkgbuild_1.4.3-1_all.deb ... 280s Unpacking r-cran-pkgbuild (1.4.3-1) ... 280s Selecting previously unselected package r-cran-rprojroot. 280s Preparing to unpack .../324-r-cran-rprojroot_2.0.4-1_all.deb ... 280s Unpacking r-cran-rprojroot (2.0.4-1) ... 280s Selecting previously unselected package r-cran-pkgload. 280s Preparing to unpack .../325-r-cran-pkgload_1.3.4-1_all.deb ... 280s Unpacking r-cran-pkgload (1.3.4-1) ... 280s Selecting previously unselected package r-cran-praise. 280s Preparing to unpack .../326-r-cran-praise_1.0.0-4build1_all.deb ... 280s Unpacking r-cran-praise (1.0.0-4build1) ... 280s Selecting previously unselected package r-cran-rematch2. 280s Preparing to unpack .../327-r-cran-rematch2_2.1.2-2build1_all.deb ... 280s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 280s Selecting previously unselected package r-cran-waldo. 281s Preparing to unpack .../328-r-cran-waldo_0.5.2-1build1_all.deb ... 281s Unpacking r-cran-waldo (0.5.2-1build1) ... 281s Selecting previously unselected package r-cran-testthat. 281s Preparing to unpack .../329-r-cran-testthat_3.2.1-1_arm64.deb ... 281s Unpacking r-cran-testthat (3.2.1-1) ... 281s Selecting previously unselected package autopkgtest-satdep. 281s Preparing to unpack .../330-1-autopkgtest-satdep.deb ... 281s Unpacking autopkgtest-satdep (0) ... 282s Setting up libjs-json (0~20221030+~1.0.8-1) ... 282s Setting up javascript-common (11+nmu1) ... 282s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 282s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 282s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 282s Setting up libpaper1:arm64 (1.1.29) ... 282s 282s Creating config file /etc/papersize with new version 282s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 282s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 282s Setting up libxpm4:arm64 (1:3.5.17-1) ... 282s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 282s Setting up libxi6:arm64 (2:1.8.1-1) ... 282s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 282s Setting up libdatrie1:arm64 (0.2.13-3) ... 282s Setting up libjs-popper.js (1.16.1+ds-6) ... 282s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 282s Setting up libxcb-render0:arm64 (1.15-1) ... 282s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 282s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 282s Setting up libjs-lunr (2.3.9~dfsg-2) ... 282s Setting up unzip (6.0-28ubuntu3) ... 282s Setting up liblatex-tounicode-perl (0.54-2) ... 282s Setting up x11-common (1:7.7+23ubuntu2) ... 283s Setting up node-html5shiv (3.7.3+dfsg-5) ... 283s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 283s Setting up libdeflate0:arm64 (1.19-1) ... 283s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 283s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 283s Setting up libxcb-shm0:arm64 (1.15-1) ... 283s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 283s Setting up libpaper-utils (1.1.29) ... 283s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 283s Setting up libjs-modernizr (2.6.2+ds1-5) ... 283s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 283s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 283s Setting up libjs-es5-shim (4.6.7-2) ... 283s Setting up tex-common (6.18) ... 284s update-language: texlive-base not installed and configured, doing nothing! 284s Setting up libio-string-perl (1.08-4) ... 284s Setting up zip (3.0-13) ... 284s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 284s Setting up libblas3:arm64 (3.12.0-3) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 284s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 284s Setting up libpkgconf3:arm64 (1.8.1-2) ... 284s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 284s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 284s Setting up t1utils (1.41-4build2) ... 284s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 284s Setting up libjs-d3 (3.5.17-4) ... 284s Setting up fonts-dejavu-mono (2.37-8) ... 284s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 284s Setting up libmpc3:arm64 (1.3.1-1) ... 284s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 284s Setting up icu-devtools (74.2-1ubuntu1) ... 284s Setting up fonts-dejavu-core (2.37-8) ... 284s Setting up pkgconf-bin (1.8.1-2) ... 284s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 284s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 284s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libwebp7:arm64 (1.3.2-0.4) ... 284s Setting up libreadline8t64:arm64 (8.2-3.1) ... 284s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 284s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 284s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 284s Setting up libnsl-dev:arm64 (1.3.0-3) ... 284s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 284s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 284s Setting up fonts-lmodern (2.005-1) ... 284s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 284s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 284s Setting up libthai-data (0.1.29-2) ... 284s Setting up node-bootstrap-sass (3.4.3-2) ... 284s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 284s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 284s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 284s Setting up pandoc-data (3.1.3-1) ... 284s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 284s Setting up libisl23:arm64 (0.26-3) ... 284s Setting up libc-dev-bin (2.39-0ubuntu2) ... 284s Setting up node-normalize.css (8.0.1-5) ... 284s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 284s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 284s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 284s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 284s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libblas-dev:arm64 (3.12.0-3) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 284s Setting up dctrl-tools (2.24-3build2) ... 284s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 284s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 284s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 284s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 284s Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 284s Setting up libpotrace0:arm64 (1.16-2) ... 284s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 284s Setting up libice6:arm64 (2:1.0.10-1build2) ... 284s Setting up liblapack3:arm64 (3.12.0-3) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 284s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 284s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 284s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 284s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 284s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 284s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 284s Setting up pkgconf:arm64 (1.8.1-2) ... 284s Setting up libthai0:arm64 (0.1.29-2) ... 284s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 284s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 284s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 284s Setting up pandoc (3.1.3+ds-2) ... 284s Setting up liblapack-dev:arm64 (3.12.0-3) ... 284s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 284s Setting up pkg-config:arm64 (1.8.1-2) ... 284s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 284s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 284s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 284s Setting up curl (8.5.0-2ubuntu7) ... 284s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 284s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 284s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 284s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 284s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 284s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 284s Setting up fontconfig (2.15.0-1ubuntu1) ... 286s Regenerating fonts cache... done. 286s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 286s Setting up libxft2:arm64 (2.3.6-1) ... 286s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 287s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 287s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 287s Setting up cpp-13 (13.2.0-17ubuntu2) ... 287s Setting up libtk8.6:arm64 (8.6.13-2) ... 287s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 287s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 287s Setting up libreadline-dev:arm64 (8.2-3.1) ... 287s Setting up libcairo2:arm64 (1.18.0-1) ... 287s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 287s Setting up gcc-13 (13.2.0-17ubuntu2) ... 287s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 287s Setting up cpp (4:13.2.0-7ubuntu1) ... 287s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 287s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 287s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 287s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 287s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 287s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 287s Setting up g++-13 (13.2.0-17ubuntu2) ... 287s Setting up libxmu6:arm64 (2:1.1.3-3) ... 287s Setting up libpng-dev:arm64 (1.6.43-3) ... 287s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 287s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 287s Setting up libxaw7:arm64 (2:1.0.14-1) ... 287s Setting up gcc (4:13.2.0-7ubuntu1) ... 287s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 287s Setting up r-base-core (4.3.3-2build1) ... 287s 287s Creating config file /etc/R/Renviron with new version 287s Setting up r-cran-crayon (1.5.2-1) ... 287s Setting up r-cran-locfdr (1.1-8-2) ... 287s Setting up r-cran-labeling (0.4.3-1) ... 287s Setting up r-cran-sourcetools (0.1.7-1-1) ... 287s Setting up r-cran-futile.options (1.0.1-3build1) ... 287s Setting up r-cran-lattice (0.22-5-1) ... 287s Setting up r-cran-ps (1.7.6-1) ... 287s Setting up r-cran-nlme (3.1.164-1) ... 287s Setting up r-cran-farver (2.1.1-1) ... 287s Setting up r-cran-formatr (1.14-1) ... 287s Setting up r-cran-pbapply (1.7-2-1) ... 287s Setting up r-cran-xml (3.99-0.16.1-1) ... 287s Setting up r-cran-viridislite (0.4.2-2) ... 287s Setting up r-cran-locfit (1.5-9.8-1) ... 287s Setting up texlive-binaries (2023.20230311.66589-9) ... 287s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 287s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 287s Setting up r-cran-statmod (1.5.0-1) ... 287s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 287s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 287s Setting up r-cran-lazyeval (0.2.2-1build1) ... 287s Setting up r-cran-commonmark (1.9.1-1) ... 287s Setting up r-cran-r6 (2.5.1-1) ... 287s Setting up r-cran-pkgkitten (0.2.3-1) ... 287s Setting up texlive-base (2023.20240207-1) ... 287s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 288s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 288s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 288s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 289s Setting up r-cran-magrittr (2.0.3-1) ... 289s Setting up r-cran-rappdirs (0.3.3-1) ... 289s Setting up r-cran-filelock (1.0.3-1) ... 289s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 289s Setting up r-cran-littler (0.3.19-1) ... 289s Setting up r-cran-bh (1.84.0-1) ... 289s Setting up r-cran-fs (1.6.3+dfsg-1) ... 289s Setting up r-cran-rcpp (1.0.12-1) ... 289s Setting up r-cran-curl (5.2.0+dfsg-1) ... 289s Setting up r-cran-codetools (0.2-19-1) ... 289s Setting up r-cran-brio (1.1.4-1) ... 289s Setting up r-cran-boot (1.3-30-1) ... 289s Setting up r-cran-diffobj (0.3.5-1) ... 289s Setting up r-bioc-biocgenerics (0.48.1-2) ... 289s Setting up r-cran-rlang (1.1.3-1) ... 289s Setting up r-cran-matrixstats (1.2.0-1) ... 289s Setting up littler (0.3.19-1) ... 289s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 289s Setting up r-cran-xfun (0.41+dfsg-1) ... 289s Setting up r-cran-sys (3.4.2-1) ... 289s Setting up r-cran-plogr (0.2.0-3build1) ... 289s Setting up r-cran-withr (2.5.0-1) ... 289s Setting up r-cran-processx (3.8.3-1) ... 289s Setting up r-cran-mime (0.12-1) ... 289s Setting up r-cran-praise (1.0.0-4build1) ... 289s Setting up r-cran-generics (0.1.3-1) ... 289s Setting up r-cran-base64enc (0.1-3-3) ... 289s Setting up r-cran-abind (1.4-5-2) ... 289s Setting up r-cran-digest (0.6.34-1) ... 289s Setting up r-cran-yaml (2.3.8-1) ... 289s Setting up r-cran-lambda.r (1.2.4-2build1) ... 289s Setting up r-bioc-protgenerics (1.34.0-1) ... 289s Setting up r-cran-evaluate (0.23-1) ... 289s Setting up r-cran-dbi (1.2.2-1) ... 289s Setting up r-cran-highr (0.10+dfsg-1) ... 289s Setting up r-cran-prettyunits (1.2.0-1) ... 289s Setting up r-cran-fansi (1.0.5-1) ... 289s Setting up r-cran-mass (7.3-60.0.1-1) ... 289s Setting up r-cran-snow (1:0.4.4-2) ... 289s Setting up r-cran-glue (1.7.0-1) ... 289s Setting up r-cran-bit (4.0.5-1) ... 289s Setting up r-cran-xtable (1:1.8-4-2) ... 289s Setting up r-cran-cli (3.6.2-1) ... 289s Setting up gfortran (4:13.2.0-7ubuntu1) ... 289s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 289s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 289s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 289s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 289s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 289s Setting up r-cran-bitops (1.0-7-1) ... 289s Setting up r-bioc-biocversion (3.18.1-1) ... 289s Setting up r-cran-rprojroot (2.0.4-1) ... 289s Setting up r-cran-bit64 (4.0.5-1) ... 289s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 289s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 289s Setting up r-cran-askpass (1.2.0-1) ... 289s Setting up r-cran-fastmap (1.1.1-1) ... 289s Setting up r-cran-png (0.1-8-1) ... 289s Setting up r-bioc-biobase (2.62.0-1) ... 289s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 289s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 289s Setting up r-cran-utf8 (1.2.4-1) ... 289s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 289s Setting up r-cran-stringi (1.8.3-1) ... 289s Setting up texlive-latex-base (2023.20240207-1) ... 289s Setting up r-cran-rex (1.2.1-1) ... 289s Setting up r-cran-hwriter (1.3.2.1-1) ... 289s Setting up r-cran-cpp11 (0.4.7-1) ... 289s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 289s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 289s Setting up r-cran-isoband (0.2.7-1) ... 289s Setting up r-cran-futile.logger (1.4.3-4build1) ... 289s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 289s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 289s Setting up r-cran-later (1.3.2+dfsg-1) ... 289s Setting up r-cran-matrix (1.6-5-1) ... 289s Setting up r-cran-tinytex (0.49-1) ... 289s Setting up r-cran-knitr (1.45+dfsg-1) ... 289s Setting up r-cran-mgcv (1.9-1-1) ... 289s Setting up g++ (4:13.2.0-7ubuntu1) ... 289s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 289s Setting up r-cran-cachem (1.0.8-1) ... 289s Setting up build-essential (12.10ubuntu1) ... 289s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 289s Setting up r-bioc-iranges (2.36.0-1) ... 289s Setting up r-cran-rjson (0.2.21-1) ... 289s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 289s Setting up r-cran-restfulr (0.0.15-1) ... 289s Setting up r-cran-vctrs (0.6.5-1) ... 289s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 289s Setting up r-cran-ellipsis (0.3.2-2) ... 289s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 289s Setting up r-base-dev (4.3.3-2build1) ... 289s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 289s Setting up r-cran-stringr (1.5.1-1) ... 289s Setting up r-bioc-biocparallel (1.36.0-1) ... 289s Setting up r-cran-callr (3.7.3-2) ... 289s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 289s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 289s Setting up r-cran-desc (1.4.3-1) ... 289s Setting up r-cran-xml2 (1.3.6-1) ... 289s Setting up r-cran-munsell (0.5.0-2build1) ... 289s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 289s Setting up r-cran-survival (3.5-8-1) ... 289s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 289s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 289s Setting up texlive-bibtex-extra (2023.20240207-1) ... 289s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 289s Setting up r-cran-httr (1.4.7+dfsg-1) ... 289s Setting up r-cran-hms (1.1.3-1) ... 289s Setting up r-cran-scales (1.3.0-1) ... 289s Setting up r-cran-memoise (2.0.1-1) ... 289s Setting up r-cran-covr (3.6.4+dfsg-1) ... 289s Setting up r-cran-promises (1.2.1+dfsg-1) ... 289s Setting up r-cran-purrr (1.0.2-1) ... 289s Setting up r-cran-blob (1.2.4-1) ... 289s Setting up r-cran-htmltools (0.5.7-1) ... 289s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 289s Setting up r-bioc-xvector (0.42.0-1) ... 289s Setting up r-cran-pkgbuild (1.4.3-1) ... 289s Setting up r-cran-sass (0.4.8+dfsg-1) ... 289s Setting up r-cran-dplyr (1.1.4-1) ... 289s Setting up r-cran-rsqlite (2.3.4-1) ... 289s Setting up r-cran-progress (1.2.3-1) ... 289s Setting up r-cran-pkgload (1.3.4-1) ... 289s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 289s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 289s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 289s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 289s Setting up r-cran-rematch2 (2.1.2-2build1) ... 289s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 289s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 289s Setting up r-cran-fontawesome (0.5.2-1) ... 289s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 289s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 289s Setting up r-cran-waldo (0.5.2-1build1) ... 289s Setting up r-cran-tidyr (1.3.1-1) ... 289s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 289s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 289s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 289s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 289s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 289s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 289s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 289s Setting up r-bioc-annotationdbi (1.64.1-1) ... 289s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 289s Setting up r-cran-testthat (3.2.1-1) ... 289s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 289s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 289s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 289s Setting up r-bioc-saturn (1.10.0+dfsg-1) ... 289s Setting up r-bioc-genefilter (1.84.0-1) ... 289s Setting up r-bioc-genomicalignments (1.38.2-1) ... 289s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 289s Setting up r-cran-bookdown (0.37+dfsg-1) ... 289s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 289s Setting up r-bioc-rtracklayer (1.62.0-1) ... 289s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 289s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 289s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 289s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 289s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 289s Setting up r-cran-dt (0.31+dfsg-1) ... 289s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 289s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 289s Setting up autopkgtest-satdep (0) ... 289s Processing triggers for man-db (2.12.0-3) ... 290s Processing triggers for install-info (7.1-3) ... 291s Processing triggers for libc-bin (2.39-0ubuntu2) ... 291s Processing triggers for tex-common (6.18) ... 291s Running updmap-sys. This may take some time... done. 291s Running mktexlsr /var/lib/texmf ... done. 292s Building format(s) --all. 329s This may take some time... done. 347s (Reading database ... 129347 files and directories currently installed.) 347s Removing autopkgtest-satdep (0) ... 348s autopkgtest [17:49:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 348s autopkgtest [17:49:18]: test pkg-r-autopkgtest: [----------------------- 348s Test: Try to load the R library satuRn 349s 349s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 349s Copyright (C) 2024 The R Foundation for Statistical Computing 349s Platform: aarch64-unknown-linux-gnu (64-bit) 349s 349s R is free software and comes with ABSOLUTELY NO WARRANTY. 349s You are welcome to redistribute it under certain conditions. 349s Type 'license()' or 'licence()' for distribution details. 349s 349s R is a collaborative project with many contributors. 349s Type 'contributors()' for more information and 349s 'citation()' on how to cite R or R packages in publications. 349s 349s Type 'demo()' for some demos, 'help()' for on-line help, or 349s 'help.start()' for an HTML browser interface to help. 349s Type 'q()' to quit R. 349s 349s > library('satuRn') 355s > 355s > 356s Other tests are currently unsupported! 356s They will be progressively added. 356s autopkgtest [17:49:26]: test pkg-r-autopkgtest: -----------------------] 356s pkg-r-autopkgtest PASS 356s autopkgtest [17:49:26]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 357s autopkgtest [17:49:27]: @@@@@@@@@@@@@@@@@@@@ summary 357s pkg-r-autopkgtest PASS 361s Creating nova instance adt-noble-arm64-r-bioc-saturn-20240316-174330-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...