0s autopkgtest [17:43:01]: starting date and time: 2024-03-16 17:43:01+0000 0s autopkgtest [17:43:01]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:43:01]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._4s4wqm7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-s4vectors --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-s4vectors-20240316-174301-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 130s autopkgtest [17:45:11]: testbed dpkg architecture: arm64 130s autopkgtest [17:45:11]: testbed apt version: 2.7.12 130s autopkgtest [17:45:11]: @@@@@@@@@@@@@@@@@@@@ test bed setup 130s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 131s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 131s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 131s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 131s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 131s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 131s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 131s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 131s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 131s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 131s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 131s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 131s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 134s Fetched 9060 kB in 2s (4811 kB/s) 134s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Calculating upgrade... 139s The following packages will be REMOVED: 139s libglib2.0-0 libssl3 139s The following NEW packages will be installed: 139s libglib2.0-0t64 libssl3t64 xdg-user-dirs 139s The following packages have been kept back: 139s curl 139s The following packages will be upgraded: 139s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 139s ubuntu-minimal ubuntu-standard 140s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 140s Need to get 4613 kB of archives. 140s After this operation, 211 kB of additional disk space will be used. 140s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 140s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 140s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 140s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 140s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 140s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 140s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 140s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 140s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 140s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 141s Fetched 4613 kB in 1s (6226 kB/s) 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 141s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 141s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 141s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 141s udisks2 depends on libglib2.0-0 (>= 2.77.0). 141s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 141s python3-gi depends on libglib2.0-0 (>= 2.77.0). 141s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 141s netplan.io depends on libglib2.0-0 (>= 2.70.0). 141s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 141s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 141s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 141s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 141s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 141s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 141s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 141s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 141s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 141s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 141s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 141s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 141s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 141s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 141s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 141s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 141s fwupd depends on libglib2.0-0 (>= 2.79.0). 141s bolt depends on libglib2.0-0 (>= 2.56.0). 141s 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 141s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 141s Selecting previously unselected package libglib2.0-0t64:arm64. 141s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 141s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 141s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 141s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 141s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 142s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 142s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 143s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 143s wget depends on libssl3 (>= 3.0.0). 143s u-boot-tools depends on libssl3 (>= 3.0.0). 143s tnftp depends on libssl3 (>= 3.0.0). 143s tcpdump depends on libssl3 (>= 3.0.0). 143s systemd-resolved depends on libssl3 (>= 3.0.0). 143s systemd depends on libssl3 (>= 3.0.0). 143s sudo depends on libssl3 (>= 3.0.0). 143s sbsigntool depends on libssl3 (>= 3.0.0). 143s rsync depends on libssl3 (>= 3.0.0). 143s python3-cryptography depends on libssl3 (>= 3.0.0). 143s openssh-server depends on libssl3 (>= 3.0.10). 143s openssh-client depends on libssl3 (>= 3.0.10). 143s mtd-utils depends on libssl3 (>= 3.0.0). 143s mokutil depends on libssl3 (>= 3.0.0). 143s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 143s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 143s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 143s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 143s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 143s libnvme1 depends on libssl3 (>= 3.0.0). 143s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 143s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 143s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 143s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 143s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 143s kmod depends on libssl3 (>= 3.0.0). 143s dhcpcd-base depends on libssl3 (>= 3.0.0). 143s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 143s 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 143s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 143s Selecting previously unselected package libssl3t64:arm64. 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 143s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 143s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 143s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 143s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 143s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 143s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 143s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 143s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 143s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 143s Unpacking ubuntu-minimal (1.536) over (1.535) ... 143s Selecting previously unselected package xdg-user-dirs. 143s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 143s Unpacking xdg-user-dirs (0.18-1) ... 143s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 143s Unpacking ubuntu-standard (1.536) over (1.535) ... 143s Setting up ubuntu-minimal (1.536) ... 143s Setting up xdg-user-dirs (0.18-1) ... 143s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 143s Setting up libtirpc-common (1.3.4+ds-1.1) ... 143s Setting up ubuntu-standard (1.536) ... 143s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 143s No schema files found: doing nothing. 143s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 143s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 143s Setting up openssl (3.0.13-0ubuntu1) ... 143s Setting up readline-common (8.2-3.1) ... 143s Processing triggers for man-db (2.12.0-3) ... 144s Processing triggers for install-info (7.1-3) ... 144s Processing triggers for libc-bin (2.39-0ubuntu2) ... 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 146s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 146s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 146s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 146s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 146s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 148s Reading package lists... 148s Reading package lists... 148s Building dependency tree... 148s Reading state information... 149s Calculating upgrade... 149s The following packages have been kept back: 149s curl 149s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 149s Reading package lists... 149s Building dependency tree... 149s Reading state information... 150s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 153s autopkgtest [17:45:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 153s autopkgtest [17:45:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-s4vectors 157s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4vectors 0.40.2+dfsg-1 (dsc) [2187 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4vectors 0.40.2+dfsg-1 (tar) [547 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4vectors 0.40.2+dfsg-1 (diff) [22.8 kB] 157s gpgv: Signature made Wed Nov 29 16:41:20 2023 UTC 157s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 157s gpgv: issuer "tillea@rki.de" 157s gpgv: Can't check signature: No public key 157s dpkg-source: warning: cannot verify inline signature for ./r-bioc-s4vectors_0.40.2+dfsg-1.dsc: no acceptable signature found 159s autopkgtest [17:45:40]: testing package r-bioc-s4vectors version 0.40.2+dfsg-1 160s autopkgtest [17:45:41]: build not needed 161s autopkgtest [17:45:42]: test pkg-r-autopkgtest: preparing testbed 162s Reading package lists... 163s Building dependency tree... 163s Reading state information... 163s Starting pkgProblemResolver with broken count: 0 163s Starting 2 pkgProblemResolver with broken count: 0 163s Done 164s The following additional packages will be installed: 164s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 164s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 164s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 164s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 164s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 164s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 164s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 164s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 164s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 164s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 164s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 164s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 164s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 164s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 164s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 164s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 164s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 164s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 164s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 164s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 164s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 164s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 164s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 164s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 164s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 164s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 164s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 164s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 164s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 164s pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics 164s r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings r-bioc-delayedarray 164s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 164s r-bioc-genomicranges r-bioc-graph r-bioc-iranges r-bioc-matrixgenerics 164s r-bioc-rhtslib r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors 164s r-bioc-shortread r-bioc-sparsearray r-bioc-summarizedexperiment 164s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh 164s r-cran-biocmanager r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem 164s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 164s r-cran-data.table r-cran-deldir r-cran-digest r-cran-ellipsis 164s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 164s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 164s r-cran-htmltools r-cran-httpuv r-cran-hwriter r-cran-interp r-cran-jpeg 164s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 164s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 164s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 164s r-cran-mime r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 164s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 164s r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass 164s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 164s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable 164s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 164s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 164s xdg-utils zip zlib1g-dev 164s Suggested packages: 164s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 164s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 164s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 164s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 164s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 164s libboost-context1.83-dev libboost-contract1.83-dev 164s libboost-coroutine1.83-dev libboost-date-time1.83-dev 164s libboost-exception1.83-dev libboost-fiber1.83-dev 164s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 164s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 164s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 164s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 164s libboost-numpy1.83-dev libboost-program-options1.83-dev 164s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 164s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 164s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 164s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 164s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 164s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 164s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 164s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 164s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 164s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 164s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 164s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 164s r-bioc-all r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate 164s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation 164s r-cran-batchtools r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-hdf5array 164s r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils 164s r-bioc-rtracklayer r-bioc-edger r-bioc-gviz r-bioc-annotationhub 164s r-bioc-dexseq r-bioc-keggrest r-cran-sparsem r-cran-xml r-bioc-rbgl 164s r-cran-cluster r-bioc-sparsematrixstats r-cran-testthat r-bioc-biomart 164s r-bioc-rhdf5 r-cran-rstudioapi r-cran-polyclip r-cran-markdown r-cran-sp 164s r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 164s r-cran-covr r-cran-httr r-cran-roxygen2 r-cran-inline r-cran-rmpi 164s r-cran-rlecuyer r-cran-callr r-cran-plm r-cran-zoo r-cran-survival debhelper 164s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 164s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 164s Recommended packages: 164s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 164s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 164s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 164s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 164s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 164s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 164s r-cran-whoami r-cran-bench r-cran-brio r-cran-decor r-cran-desc 164s r-cran-lobstr r-cran-progress r-cran-scales r-cran-bit64 r-cran-bit 164s r-cran-r.utils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-dplyr 164s r-cran-rsvg r-cran-pillar r-cran-spelling r-cran-survival r-cran-dbi 164s r-cran-rsqlite r-cran-waldo r-cran-cairo r-cran-markdown r-cran-ragg 164s r-cran-httr r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick 164s r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 164s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 164s r-cran-future r-cran-purrr r-cran-xml r-cran-usethis r-cran-dygraphs 164s r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 164s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 164s x11-xserver-utils 164s The following packages will be REMOVED: 164s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 164s The following NEW packages will be installed: 164s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 164s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 164s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 164s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 164s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 164s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 164s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 164s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 164s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 164s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 164s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 164s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 164s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 164s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 164s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 164s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 164s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 164s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 164s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 164s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 164s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 164s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 164s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 164s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 164s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 164s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 164s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 164s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 164s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 164s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 164s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocstyle 164s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 164s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 164s r-bioc-graph r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib 164s r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread 164s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 164s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 164s r-cran-bitops r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 164s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 164s r-cran-data.table r-cran-deldir r-cran-digest r-cran-ellipsis 164s r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 164s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 164s r-cran-htmltools r-cran-httpuv r-cran-hwriter r-cran-interp r-cran-jpeg 164s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 164s r-cran-lattice r-cran-latticeextra r-cran-lifecycle r-cran-littler 164s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 164s r-cran-mime r-cran-pkgkitten r-cran-png r-cran-promises r-cran-r6 164s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen 164s r-cran-rcurl r-cran-rlang r-cran-rmarkdown r-cran-runit r-cran-sass 164s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 164s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable 164s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 164s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 164s xdg-utils zip zlib1g-dev 164s The following packages will be upgraded: 164s curl 164s 1 upgraded, 255 newly installed, 5 to remove and 0 not upgraded. 164s Need to get 403 MB/403 MB of archives. 164s After this operation, 1315 MB of additional disk space will be used. 164s Get:1 /tmp/autopkgtest.FrrH8B/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [820 B] 164s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 164s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 164s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 164s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 164s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 164s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 164s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 164s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 165s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 165s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 165s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 165s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 165s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 165s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 165s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 165s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 165s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 165s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 165s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 165s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 165s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 165s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 165s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 165s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 165s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 165s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 165s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 165s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 165s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 165s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 166s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 166s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 166s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 166s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 166s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 166s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 166s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 166s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 166s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 166s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 166s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 166s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 166s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 166s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 166s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 166s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 166s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 166s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 166s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 166s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 166s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 166s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 166s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 166s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 166s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 166s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 166s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 166s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 166s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 166s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 166s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 167s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 167s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 167s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 167s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 167s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 167s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 167s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 167s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 167s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 167s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 167s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 167s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 167s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 167s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 167s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 167s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 167s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 167s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 167s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 167s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 167s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 167s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 167s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 167s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 167s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 167s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 167s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 167s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 167s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 167s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 167s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 167s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 167s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 167s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 167s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 167s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 167s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 167s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 167s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 168s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 168s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 168s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 168s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 168s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 168s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 168s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 168s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 168s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 168s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 168s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 168s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 168s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 168s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 168s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 168s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 168s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 168s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 168s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 168s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 168s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 168s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 168s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 168s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 168s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 168s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 168s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 168s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 168s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 168s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 168s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 168s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 168s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 168s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 168s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 168s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 168s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 168s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 168s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 168s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 168s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 168s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 169s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 169s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 169s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 169s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 169s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 169s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 169s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 170s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 170s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 170s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 170s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 170s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 170s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 170s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 170s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 170s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 170s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 171s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 171s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 171s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 171s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 171s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 171s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 171s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 171s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 171s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 171s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 171s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 171s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 171s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 171s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 171s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 171s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 171s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 171s Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 171s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 171s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 171s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 171s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 171s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 171s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 171s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 171s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 171s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 171s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 171s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 171s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 171s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 171s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 171s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 171s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 171s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 171s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 171s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 171s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 171s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 171s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 171s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 171s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 171s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 172s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 172s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 172s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 172s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 172s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 172s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 172s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 172s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 172s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 172s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 172s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 172s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 172s Get:216 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 172s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 173s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 174s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 174s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 178s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 178s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 178s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 178s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 178s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 178s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 178s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 178s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 179s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 179s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 180s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 180s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 180s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 180s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 180s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 180s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 180s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 180s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 180s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 181s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 181s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 181s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 181s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 181s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 181s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 181s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 181s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 181s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 181s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 181s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 181s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 181s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 181s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 181s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 182s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 182s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 183s Preconfiguring packages ... 183s Fetched 403 MB in 18s (22.6 MB/s) 183s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 183s wget depends on libpsl5 (>= 0.16.0). 183s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 183s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 183s 183s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 183s Removing libpsl5:arm64 (0.21.2-1build1) ... 184s Selecting previously unselected package libpsl5t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 184s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 184s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 184s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 184s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 184s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 184s Selecting previously unselected package libcurl4t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 184s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 184s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 184s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 184s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 184s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 184s 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 184s Removing libpng16-16:arm64 (1.6.43-1) ... 184s Selecting previously unselected package libpng16-16t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 184s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 184s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 184s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 184s parted depends on libreadline8 (>= 6.0). 184s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 184s gpgsm depends on libreadline8 (>= 6.0). 184s gpgconf depends on libreadline8 (>= 6.0). 184s gpg depends on libreadline8 (>= 6.0). 184s gawk depends on libreadline8 (>= 6.0). 184s fdisk depends on libreadline8 (>= 6.0). 184s 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 184s Removing libreadline8:arm64 (8.2-3) ... 184s Selecting previously unselected package libreadline8t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 184s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 184s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 184s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 184s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 184s lsof depends on libtirpc3 (>= 1.0.2). 184s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 184s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 184s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 184s iproute2 depends on libtirpc3 (>= 1.0.2). 184s 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 184s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 184s Selecting previously unselected package libtirpc3t64:arm64. 184s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 184s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 184s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 184s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 184s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 184s Selecting previously unselected package libc-dev-bin. 184s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 184s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 184s Selecting previously unselected package linux-libc-dev:arm64. 185s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 185s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 185s Selecting previously unselected package libcrypt-dev:arm64. 185s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 185s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 185s Selecting previously unselected package libtirpc-dev:arm64. 185s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 185s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 185s Selecting previously unselected package libnsl-dev:arm64. 185s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 185s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 185s Selecting previously unselected package rpcsvc-proto. 185s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 185s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 185s Selecting previously unselected package libc6-dev:arm64. 185s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 185s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 185s Selecting previously unselected package libisl23:arm64. 185s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 185s Unpacking libisl23:arm64 (0.26-3) ... 185s Selecting previously unselected package libmpc3:arm64. 185s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 185s Unpacking libmpc3:arm64 (1.3.1-1) ... 185s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 185s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package cpp-13. 185s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package cpp-aarch64-linux-gnu. 185s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package cpp. 185s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking cpp (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package libcc1-0:arm64. 185s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libgomp1:arm64. 185s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libitm1:arm64. 185s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libatomic1:arm64. 185s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 185s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 185s Selecting previously unselected package libasan8:arm64. 186s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package liblsan0:arm64. 186s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libtsan2:arm64. 186s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libubsan1:arm64. 186s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libhwasan0:arm64. 186s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 186s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 186s Selecting previously unselected package libgcc-13-dev:arm64. 186s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 186s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 186s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 186s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 186s Selecting previously unselected package gcc-13. 186s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 186s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 186s Selecting previously unselected package gcc-aarch64-linux-gnu. 186s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 186s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 186s Selecting previously unselected package gcc. 186s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 186s Unpacking gcc (4:13.2.0-7ubuntu1) ... 186s Selecting previously unselected package libstdc++-13-dev:arm64. 186s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 186s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 187s Selecting previously unselected package g++-13-aarch64-linux-gnu. 187s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 187s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 187s Selecting previously unselected package g++-13. 187s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 187s Unpacking g++-13 (13.2.0-17ubuntu2) ... 187s Selecting previously unselected package g++-aarch64-linux-gnu. 187s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 187s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 187s Selecting previously unselected package g++. 187s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 187s Unpacking g++ (4:13.2.0-7ubuntu1) ... 187s Selecting previously unselected package build-essential. 187s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 187s Unpacking build-essential (12.10ubuntu1) ... 187s Selecting previously unselected package dctrl-tools. 187s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 187s Unpacking dctrl-tools (2.24-3build2) ... 187s Selecting previously unselected package fonts-dejavu-mono. 187s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 187s Unpacking fonts-dejavu-mono (2.37-8) ... 187s Selecting previously unselected package fonts-dejavu-core. 187s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 187s Unpacking fonts-dejavu-core (2.37-8) ... 187s Selecting previously unselected package fontconfig-config. 187s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 187s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package libfontconfig1:arm64. 187s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 187s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package fontconfig. 188s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 188s Unpacking fontconfig (2.15.0-1ubuntu1) ... 188s Selecting previously unselected package fonts-font-awesome. 188s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 188s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 188s Selecting previously unselected package fonts-glyphicons-halflings. 188s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 188s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 188s Selecting previously unselected package fonts-lmodern. 188s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 188s Unpacking fonts-lmodern (2.005-1) ... 188s Selecting previously unselected package fonts-mathjax. 188s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 188s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 188s Selecting previously unselected package libgfortran5:arm64. 188s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 188s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libgfortran-13-dev:arm64. 188s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 188s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package gfortran-13. 188s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 188s Selecting previously unselected package gfortran-aarch64-linux-gnu. 188s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package gfortran. 188s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 188s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 188s Selecting previously unselected package icu-devtools. 188s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 188s Unpacking icu-devtools (74.2-1ubuntu1) ... 188s Selecting previously unselected package javascript-common. 188s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 188s Unpacking javascript-common (11+nmu1) ... 188s Selecting previously unselected package libio-string-perl. 188s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 188s Unpacking libio-string-perl (1.08-4) ... 188s Selecting previously unselected package liblatex-tounicode-perl. 189s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 189s Unpacking liblatex-tounicode-perl (0.54-2) ... 189s Selecting previously unselected package libbibtex-parser-perl. 189s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 189s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 189s Selecting previously unselected package libblas3:arm64. 189s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 189s Unpacking libblas3:arm64 (3.12.0-3) ... 189s Selecting previously unselected package libblas-dev:arm64. 189s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 189s Unpacking libblas-dev:arm64 (3.12.0-3) ... 189s Selecting previously unselected package libboost1.83-dev:arm64. 189s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 189s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 191s Selecting previously unselected package libboost-dev:arm64. 191s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 191s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 191s Selecting previously unselected package libbz2-dev:arm64. 191s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 191s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 191s Selecting previously unselected package libpixman-1-0:arm64. 191s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 191s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 191s Selecting previously unselected package libxcb-render0:arm64. 191s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 191s Unpacking libxcb-render0:arm64 (1.15-1) ... 191s Selecting previously unselected package libxcb-shm0:arm64. 191s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 191s Unpacking libxcb-shm0:arm64 (1.15-1) ... 191s Selecting previously unselected package libxrender1:arm64. 191s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 191s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 191s Selecting previously unselected package libcairo2:arm64. 191s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 191s Unpacking libcairo2:arm64 (1.18.0-1) ... 191s Selecting previously unselected package libdatrie1:arm64. 191s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 191s Unpacking libdatrie1:arm64 (0.2.13-3) ... 191s Selecting previously unselected package libdeflate0:arm64. 192s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 192s Unpacking libdeflate0:arm64 (1.19-1) ... 192s Selecting previously unselected package libgraphite2-3:arm64. 192s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 192s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 192s Selecting previously unselected package libharfbuzz0b:arm64. 192s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 192s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 192s Selecting previously unselected package x11-common. 192s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 192s Unpacking x11-common (1:7.7+23ubuntu2) ... 192s Selecting previously unselected package libice6:arm64. 192s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 192s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 192s Selecting previously unselected package libicu-dev:arm64. 192s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 192s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 192s Selecting previously unselected package libjpeg-turbo8:arm64. 192s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 192s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 192s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 192s Preparing to unpack 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package libjs-jquery-datatables. 193s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 193s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 193s Selecting previously unselected package libjs-sifter.js. 193s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 193s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 193s Selecting previously unselected package libjs-microplugin.js. 193s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 193s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 193s Selecting previously unselected package libjs-jquery-selectize.js. 193s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 193s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 193s Selecting previously unselected package libjs-jquery-ui. 193s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 193s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 193s Selecting previously unselected package libjs-json. 193s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 193s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 193s Selecting previously unselected package libjs-lunr. 193s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 193s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 193s Selecting previously unselected package libjs-prettify. 193s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 193s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 193s Selecting previously unselected package libkpathsea6:arm64. 193s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 193s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 193s Selecting previously unselected package liblapack3:arm64. 193s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 193s Unpacking liblapack3:arm64 (3.12.0-3) ... 194s Selecting previously unselected package liblapack-dev:arm64. 194s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 194s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 194s Selecting previously unselected package liblerc4:arm64. 194s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 194s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 194s Selecting previously unselected package liblua5.4-0:arm64. 194s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 194s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 194s Selecting previously unselected package libncurses-dev:arm64. 194s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 194s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 194s Selecting previously unselected package libthai-data. 194s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 194s Unpacking libthai-data (0.1.29-2) ... 194s Selecting previously unselected package libthai0:arm64. 194s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 194s Unpacking libthai0:arm64 (0.1.29-2) ... 194s Selecting previously unselected package libpango-1.0-0:arm64. 194s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 194s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpangoft2-1.0-0:arm64. 194s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 194s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpangocairo-1.0-0:arm64. 194s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 194s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 194s Selecting previously unselected package libpaper1:arm64. 194s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 194s Unpacking libpaper1:arm64 (1.1.29) ... 194s Selecting previously unselected package libpaper-utils. 194s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 194s Unpacking libpaper-utils (1.1.29) ... 194s Selecting previously unselected package libpcre2-16-0:arm64. 194s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 194s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 194s Selecting previously unselected package libpcre2-32-0:arm64. 194s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 194s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 194s Selecting previously unselected package libpcre2-posix3:arm64. 194s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 194s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 194s Selecting previously unselected package libpcre2-dev:arm64. 194s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 194s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 194s Selecting previously unselected package libpkgconf3:arm64. 194s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 194s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 194s Selecting previously unselected package zlib1g-dev:arm64. 194s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 194s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 194s Selecting previously unselected package libpng-dev:arm64. 194s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 194s Unpacking libpng-dev:arm64 (1.6.43-3) ... 194s Selecting previously unselected package libpotrace0:arm64. 194s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 194s Unpacking libpotrace0:arm64 (1.16-2) ... 194s Selecting previously unselected package libptexenc1:arm64. 195s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 195s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 195s Selecting previously unselected package libreadline-dev:arm64. 195s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 195s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 195s Selecting previously unselected package libsharpyuv0:arm64. 195s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 195s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 195s Selecting previously unselected package libsm6:arm64. 195s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 195s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 195s Selecting previously unselected package libsynctex2:arm64. 195s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 195s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 195s Selecting previously unselected package libtcl8.6:arm64. 195s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 195s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 195s Selecting previously unselected package libteckit0:arm64. 195s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 195s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 195s Selecting previously unselected package libtexlua53-5:arm64. 195s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 195s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 195s Selecting previously unselected package libjbig0:arm64. 195s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 195s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 195s Selecting previously unselected package libwebp7:arm64. 195s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 195s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 195s Selecting previously unselected package libtiff6:arm64. 195s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 195s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 195s Selecting previously unselected package libxft2:arm64. 195s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 195s Unpacking libxft2:arm64 (2.3.6-1) ... 195s Selecting previously unselected package libxss1:arm64. 195s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 195s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 195s Selecting previously unselected package libtk8.6:arm64. 195s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 195s Unpacking libtk8.6:arm64 (8.6.13-2) ... 195s Selecting previously unselected package libxt6t64:arm64. 195s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 195s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 195s Selecting previously unselected package libxmu6:arm64. 195s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 195s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 195s Selecting previously unselected package libxpm4:arm64. 195s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 195s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 195s Selecting previously unselected package libxaw7:arm64. 195s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 195s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 195s Selecting previously unselected package libxi6:arm64. 195s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 195s Unpacking libxi6:arm64 (2:1.8.1-1) ... 195s Selecting previously unselected package libzzip-0-13:arm64. 195s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 195s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 195s Selecting previously unselected package zip. 195s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 195s Unpacking zip (3.0-13) ... 196s Selecting previously unselected package unzip. 196s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 196s Unpacking unzip (6.0-28ubuntu3) ... 196s Selecting previously unselected package xdg-utils. 196s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 196s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 196s Selecting previously unselected package r-base-core. 196s Preparing to unpack .../136-r-base-core_4.3.3-2build1_arm64.deb ... 196s Unpacking r-base-core (4.3.3-2build1) ... 196s Selecting previously unselected package r-cran-littler. 196s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 196s Unpacking r-cran-littler (0.3.19-1) ... 196s Selecting previously unselected package littler. 196s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 196s Unpacking littler (0.3.19-1) ... 196s Selecting previously unselected package node-bootstrap-sass. 196s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 196s Unpacking node-bootstrap-sass (3.4.3-2) ... 196s Selecting previously unselected package node-html5shiv. 196s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 196s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 196s Selecting previously unselected package node-normalize.css. 196s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 196s Unpacking node-normalize.css (8.0.1-5) ... 196s Selecting previously unselected package pandoc-data. 196s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 196s Unpacking pandoc-data (3.1.3-1) ... 196s Selecting previously unselected package pandoc. 196s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 196s Unpacking pandoc (3.1.3+ds-2) ... 197s Selecting previously unselected package pkgconf-bin. 197s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 197s Unpacking pkgconf-bin (1.8.1-2) ... 197s Selecting previously unselected package pkgconf:arm64. 197s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 197s Unpacking pkgconf:arm64 (1.8.1-2) ... 197s Selecting previously unselected package pkg-config:arm64. 197s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 197s Unpacking pkg-config:arm64 (1.8.1-2) ... 197s Selecting previously unselected package liblzma-dev:arm64. 197s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 197s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 197s Selecting previously unselected package r-base-dev. 197s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 197s Unpacking r-base-dev (4.3.3-2build1) ... 197s Selecting previously unselected package pkg-r-autopkgtest. 197s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 197s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 197s Selecting previously unselected package r-bioc-biocgenerics. 197s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 197s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 198s Selecting previously unselected package r-bioc-biobase. 198s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 198s Unpacking r-bioc-biobase (2.62.0-1) ... 198s Selecting previously unselected package r-cran-formatr. 198s Preparing to unpack .../152-r-cran-formatr_1.14-1_all.deb ... 198s Unpacking r-cran-formatr (1.14-1) ... 198s Selecting previously unselected package r-cran-lambda.r. 198s Preparing to unpack .../153-r-cran-lambda.r_1.2.4-2build1_all.deb ... 198s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 198s Selecting previously unselected package r-cran-futile.options. 198s Preparing to unpack .../154-r-cran-futile.options_1.0.1-3build1_all.deb ... 198s Unpacking r-cran-futile.options (1.0.1-3build1) ... 198s Selecting previously unselected package r-cran-futile.logger. 198s Preparing to unpack .../155-r-cran-futile.logger_1.4.3-4build1_all.deb ... 198s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 198s Selecting previously unselected package r-cran-snow. 198s Preparing to unpack .../156-r-cran-snow_1%3a0.4.4-2_all.deb ... 198s Unpacking r-cran-snow (1:0.4.4-2) ... 198s Selecting previously unselected package r-cran-codetools. 198s Preparing to unpack .../157-r-cran-codetools_0.2-19-1_all.deb ... 198s Unpacking r-cran-codetools (0.2-19-1) ... 198s Selecting previously unselected package r-cran-bh. 198s Preparing to unpack .../158-r-cran-bh_1.84.0-1_all.deb ... 198s Unpacking r-cran-bh (1.84.0-1) ... 198s Selecting previously unselected package r-cran-cpp11. 198s Preparing to unpack .../159-r-cran-cpp11_0.4.7-1_all.deb ... 198s Unpacking r-cran-cpp11 (0.4.7-1) ... 198s Selecting previously unselected package r-bioc-biocparallel. 198s Preparing to unpack .../160-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 198s Unpacking r-bioc-biocparallel (1.36.0-1) ... 198s Selecting previously unselected package r-cran-base64enc. 198s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3_arm64.deb ... 198s Unpacking r-cran-base64enc (0.1-3-3) ... 198s Selecting previously unselected package r-cran-digest. 198s Preparing to unpack .../162-r-cran-digest_0.6.34-1_arm64.deb ... 198s Unpacking r-cran-digest (0.6.34-1) ... 198s Selecting previously unselected package r-cran-rlang. 198s Preparing to unpack .../163-r-cran-rlang_1.1.3-1_arm64.deb ... 198s Unpacking r-cran-rlang (1.1.3-1) ... 198s Selecting previously unselected package r-cran-ellipsis. 198s Preparing to unpack .../164-r-cran-ellipsis_0.3.2-2_arm64.deb ... 198s Unpacking r-cran-ellipsis (0.3.2-2) ... 198s Selecting previously unselected package r-cran-fastmap. 198s Preparing to unpack .../165-r-cran-fastmap_1.1.1-1_arm64.deb ... 198s Unpacking r-cran-fastmap (1.1.1-1) ... 198s Selecting previously unselected package r-cran-htmltools. 198s Preparing to unpack .../166-r-cran-htmltools_0.5.7-1_arm64.deb ... 198s Unpacking r-cran-htmltools (0.5.7-1) ... 198s Selecting previously unselected package r-cran-evaluate. 198s Preparing to unpack .../167-r-cran-evaluate_0.23-1_all.deb ... 198s Unpacking r-cran-evaluate (0.23-1) ... 198s Selecting previously unselected package r-cran-xfun. 198s Preparing to unpack .../168-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 198s Unpacking r-cran-xfun (0.41+dfsg-1) ... 198s Selecting previously unselected package r-cran-highr. 198s Preparing to unpack .../169-r-cran-highr_0.10+dfsg-1_all.deb ... 198s Unpacking r-cran-highr (0.10+dfsg-1) ... 198s Selecting previously unselected package r-cran-yaml. 198s Preparing to unpack .../170-r-cran-yaml_2.3.8-1_arm64.deb ... 198s Unpacking r-cran-yaml (2.3.8-1) ... 198s Selecting previously unselected package libjs-mathjax. 198s Preparing to unpack .../171-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 198s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 199s Selecting previously unselected package r-cran-knitr. 199s Preparing to unpack .../172-r-cran-knitr_1.45+dfsg-1_all.deb ... 199s Unpacking r-cran-knitr (1.45+dfsg-1) ... 199s Selecting previously unselected package r-cran-cachem. 199s Preparing to unpack .../173-r-cran-cachem_1.0.8-1_arm64.deb ... 199s Unpacking r-cran-cachem (1.0.8-1) ... 199s Selecting previously unselected package r-cran-jquerylib. 199s Preparing to unpack .../174-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 199s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 199s Selecting previously unselected package r-cran-jsonlite. 199s Preparing to unpack .../175-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 199s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 199s Selecting previously unselected package r-cran-cli. 199s Preparing to unpack .../176-r-cran-cli_3.6.2-1_arm64.deb ... 199s Unpacking r-cran-cli (3.6.2-1) ... 199s Selecting previously unselected package r-cran-glue. 199s Preparing to unpack .../177-r-cran-glue_1.7.0-1_arm64.deb ... 199s Unpacking r-cran-glue (1.7.0-1) ... 199s Selecting previously unselected package r-cran-lifecycle. 199s Preparing to unpack .../178-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 199s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 199s Selecting previously unselected package r-cran-memoise. 199s Preparing to unpack .../179-r-cran-memoise_2.0.1-1_all.deb ... 199s Unpacking r-cran-memoise (2.0.1-1) ... 199s Selecting previously unselected package r-cran-mime. 199s Preparing to unpack .../180-r-cran-mime_0.12-1_arm64.deb ... 199s Unpacking r-cran-mime (0.12-1) ... 199s Selecting previously unselected package r-cran-fs. 199s Preparing to unpack .../181-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 199s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 199s Selecting previously unselected package r-cran-r6. 199s Preparing to unpack .../182-r-cran-r6_2.5.1-1_all.deb ... 199s Unpacking r-cran-r6 (2.5.1-1) ... 200s Selecting previously unselected package r-cran-rappdirs. 200s Preparing to unpack .../183-r-cran-rappdirs_0.3.3-1_arm64.deb ... 200s Unpacking r-cran-rappdirs (0.3.3-1) ... 200s Selecting previously unselected package r-cran-sass. 201s Preparing to unpack .../184-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 201s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 201s Selecting previously unselected package r-cran-bslib. 201s Preparing to unpack .../185-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 201s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 201s Selecting previously unselected package r-cran-fontawesome. 201s Preparing to unpack .../186-r-cran-fontawesome_0.5.2-1_all.deb ... 201s Unpacking r-cran-fontawesome (0.5.2-1) ... 201s Selecting previously unselected package r-cran-magrittr. 201s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_arm64.deb ... 201s Unpacking r-cran-magrittr (2.0.3-1) ... 201s Selecting previously unselected package r-cran-stringi. 201s Preparing to unpack .../188-r-cran-stringi_1.8.3-1_arm64.deb ... 201s Unpacking r-cran-stringi (1.8.3-1) ... 201s Selecting previously unselected package r-cran-vctrs. 201s Preparing to unpack .../189-r-cran-vctrs_0.6.5-1_arm64.deb ... 201s Unpacking r-cran-vctrs (0.6.5-1) ... 201s Selecting previously unselected package r-cran-stringr. 201s Preparing to unpack .../190-r-cran-stringr_1.5.1-1_all.deb ... 201s Unpacking r-cran-stringr (1.5.1-1) ... 201s Selecting previously unselected package r-cran-tinytex. 201s Preparing to unpack .../191-r-cran-tinytex_0.49-1_all.deb ... 201s Unpacking r-cran-tinytex (0.49-1) ... 201s Selecting previously unselected package libjs-modernizr. 202s Preparing to unpack .../192-libjs-modernizr_2.6.2+ds1-5_all.deb ... 202s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 202s Selecting previously unselected package r-cran-pkgkitten. 202s Preparing to unpack .../193-r-cran-pkgkitten_0.2.3-1_all.deb ... 202s Unpacking r-cran-pkgkitten (0.2.3-1) ... 202s Selecting previously unselected package r-cran-rcpp. 202s Preparing to unpack .../194-r-cran-rcpp_1.0.12-1_arm64.deb ... 202s Unpacking r-cran-rcpp (1.0.12-1) ... 202s Selecting previously unselected package r-cran-later. 202s Preparing to unpack .../195-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 202s Unpacking r-cran-later (1.3.2+dfsg-1) ... 202s Selecting previously unselected package r-cran-promises. 202s Preparing to unpack .../196-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 202s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 202s Selecting previously unselected package r-cran-httpuv. 202s Preparing to unpack .../197-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 202s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 202s Selecting previously unselected package r-cran-xtable. 202s Preparing to unpack .../198-r-cran-xtable_1%3a1.8-4-2_all.deb ... 202s Unpacking r-cran-xtable (1:1.8-4-2) ... 202s Selecting previously unselected package r-cran-sourcetools. 202s Preparing to unpack .../199-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 202s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 202s Selecting previously unselected package r-cran-crayon. 203s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ... 203s Unpacking r-cran-crayon (1.5.2-1) ... 203s Selecting previously unselected package r-cran-withr. 203s Preparing to unpack .../201-r-cran-withr_2.5.0-1_all.deb ... 203s Unpacking r-cran-withr (2.5.0-1) ... 203s Selecting previously unselected package r-cran-commonmark. 203s Preparing to unpack .../202-r-cran-commonmark_1.9.1-1_arm64.deb ... 203s Unpacking r-cran-commonmark (1.9.1-1) ... 203s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 203s Preparing to unpack .../203-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 203s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 203s Selecting previously unselected package r-cran-shiny. 203s Preparing to unpack .../204-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 203s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 203s Selecting previously unselected package r-cran-rmarkdown. 203s Preparing to unpack .../205-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 203s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 203s Selecting previously unselected package r-cran-bookdown. 203s Preparing to unpack .../206-r-cran-bookdown_0.37+dfsg-1_all.deb ... 203s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 203s Selecting previously unselected package r-cran-biocmanager. 203s Preparing to unpack .../207-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 203s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 203s Selecting previously unselected package tex-common. 203s Preparing to unpack .../208-tex-common_6.18_all.deb ... 203s Unpacking tex-common (6.18) ... 203s Selecting previously unselected package t1utils. 203s Preparing to unpack .../209-t1utils_1.41-4build2_arm64.deb ... 203s Unpacking t1utils (1.41-4build2) ... 203s Selecting previously unselected package texlive-binaries. 203s Preparing to unpack .../210-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 203s Unpacking texlive-binaries (2023.20230311.66589-9) ... 204s Selecting previously unselected package texlive-base. 204s Preparing to unpack .../211-texlive-base_2023.20240207-1_all.deb ... 204s Unpacking texlive-base (2023.20240207-1) ... 205s Selecting previously unselected package texlive-latex-base. 205s Preparing to unpack .../212-texlive-latex-base_2023.20240207-1_all.deb ... 205s Unpacking texlive-latex-base (2023.20240207-1) ... 205s Selecting previously unselected package texlive-bibtex-extra. 205s Preparing to unpack .../213-texlive-bibtex-extra_2023.20240207-1_all.deb ... 205s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 208s Selecting previously unselected package r-bioc-biocstyle. 208s Preparing to unpack .../214-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 208s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 208s Selecting previously unselected package r-bioc-s4vectors. 208s Preparing to unpack .../215-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 208s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 208s Selecting previously unselected package r-bioc-iranges. 208s Preparing to unpack .../216-r-bioc-iranges_2.36.0-1_arm64.deb ... 208s Unpacking r-bioc-iranges (2.36.0-1) ... 208s Selecting previously unselected package r-bioc-zlibbioc. 208s Preparing to unpack .../217-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 208s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 208s Selecting previously unselected package r-bioc-xvector. 208s Preparing to unpack .../218-r-bioc-xvector_0.42.0-1_arm64.deb ... 208s Unpacking r-bioc-xvector (0.42.0-1) ... 208s Selecting previously unselected package r-cran-bitops. 208s Preparing to unpack .../219-r-cran-bitops_1.0-7-1_arm64.deb ... 208s Unpacking r-cran-bitops (1.0-7-1) ... 208s Selecting previously unselected package r-cran-rcurl. 208s Preparing to unpack .../220-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 208s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 208s Selecting previously unselected package r-bioc-genomeinfodbdata. 208s Preparing to unpack .../221-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 208s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 208s Selecting previously unselected package r-bioc-genomeinfodb. 208s Preparing to unpack .../222-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 208s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 208s Selecting previously unselected package r-bioc-biostrings. 208s Preparing to unpack .../223-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 208s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 208s Selecting previously unselected package r-cran-lattice. 208s Preparing to unpack .../224-r-cran-lattice_0.22-5-1_arm64.deb ... 208s Unpacking r-cran-lattice (0.22-5-1) ... 208s Selecting previously unselected package r-cran-matrix. 208s Preparing to unpack .../225-r-cran-matrix_1.6-5-1_arm64.deb ... 208s Unpacking r-cran-matrix (1.6-5-1) ... 208s Selecting previously unselected package r-cran-matrixstats. 209s Preparing to unpack .../226-r-cran-matrixstats_1.2.0-1_arm64.deb ... 209s Unpacking r-cran-matrixstats (1.2.0-1) ... 209s Selecting previously unselected package r-bioc-matrixgenerics. 209s Preparing to unpack .../227-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 209s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 209s Selecting previously unselected package r-cran-abind. 209s Preparing to unpack .../228-r-cran-abind_1.4-5-2_all.deb ... 209s Unpacking r-cran-abind (1.4-5-2) ... 209s Selecting previously unselected package r-bioc-s4arrays. 209s Preparing to unpack .../229-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-sparsearray. 209s Preparing to unpack .../230-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 209s Selecting previously unselected package r-bioc-delayedarray. 209s Preparing to unpack .../231-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-genomicranges. 209s Preparing to unpack .../232-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-summarizedexperiment. 209s Preparing to unpack .../233-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 209s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rhtslib. 209s Preparing to unpack .../234-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rsamtools. 209s Preparing to unpack .../235-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-genomicalignments. 209s Preparing to unpack .../236-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 209s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 209s Selecting previously unselected package r-bioc-graph. 210s Preparing to unpack .../237-r-bioc-graph_1.80.0-1_arm64.deb ... 210s Unpacking r-bioc-graph (1.80.0-1) ... 210s Selecting previously unselected package r-cran-hwriter. 210s Preparing to unpack .../238-r-cran-hwriter_1.3.2.1-1_all.deb ... 210s Unpacking r-cran-hwriter (1.3.2.1-1) ... 210s Selecting previously unselected package r-cran-png. 210s Preparing to unpack .../239-r-cran-png_0.1-8-1_arm64.deb ... 210s Unpacking r-cran-png (0.1-8-1) ... 210s Selecting previously unselected package r-cran-jpeg. 210s Preparing to unpack .../240-r-cran-jpeg_0.1-10-1_arm64.deb ... 210s Unpacking r-cran-jpeg (0.1-10-1) ... 210s Selecting previously unselected package r-cran-rcolorbrewer. 210s Preparing to unpack .../241-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 210s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 210s Selecting previously unselected package r-cran-deldir. 210s Preparing to unpack .../242-r-cran-deldir_2.0-4-1_arm64.deb ... 210s Unpacking r-cran-deldir (2.0-4-1) ... 210s Selecting previously unselected package r-cran-rcppeigen. 210s Preparing to unpack .../243-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 210s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 210s Selecting previously unselected package r-cran-interp. 210s Preparing to unpack .../244-r-cran-interp_1.1-6-1_arm64.deb ... 210s Unpacking r-cran-interp (1.1-6-1) ... 210s Selecting previously unselected package r-cran-mass. 210s Preparing to unpack .../245-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 210s Unpacking r-cran-mass (7.3-60.0.1-1) ... 210s Selecting previously unselected package r-cran-latticeextra. 210s Preparing to unpack .../246-r-cran-latticeextra_0.6-30-1_all.deb ... 210s Unpacking r-cran-latticeextra (0.6-30-1) ... 210s Selecting previously unselected package r-bioc-shortread. 210s Preparing to unpack .../247-r-bioc-shortread_1.60.0-2_arm64.deb ... 210s Unpacking r-bioc-shortread (1.60.0-2) ... 210s Selecting previously unselected package r-cran-data.table. 210s Preparing to unpack .../248-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 210s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 210s Selecting previously unselected package r-cran-runit. 210s Preparing to unpack .../249-r-cran-runit_0.4.32-3_all.deb ... 210s Unpacking r-cran-runit (0.4.32-3) ... 210s Selecting previously unselected package autopkgtest-satdep. 210s Preparing to unpack .../250-1-autopkgtest-satdep.deb ... 210s Unpacking autopkgtest-satdep (0) ... 210s Setting up libjs-json (0~20221030+~1.0.8-1) ... 210s Setting up javascript-common (11+nmu1) ... 210s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 210s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 210s Setting up libsharpyuv0:arm64 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libpsl5t64:arm64 (0.21.2-1.1) ... 211s Setting up libdeflate0:arm64 (1.19-1) ... 211s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 211s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 212s Setting up libxcb-shm0:arm64 (1.15-1) ... 212s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 212s Setting up libpaper-utils (1.1.29) ... 212s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libjs-modernizr (2.6.2+ds1-5) ... 212s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 212s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 212s Setting up libjs-es5-shim (4.6.7-2) ... 212s Setting up tex-common (6.18) ... 212s update-language: texlive-base not installed and configured, doing nothing! 212s Setting up libio-string-perl (1.08-4) ... 212s Setting up zip (3.0-13) ... 212s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 212s Setting up libblas3:arm64 (3.12.0-3) ... 212s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide 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217s Setting up g++ (4:13.2.0-7ubuntu1) ... 217s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 217s Setting up r-cran-cachem (1.0.8-1) ... 217s Setting up build-essential (12.10ubuntu1) ... 217s Setting up r-bioc-iranges (2.36.0-1) ... 217s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 217s Setting up r-cran-vctrs (0.6.5-1) ... 217s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 217s Setting up r-bioc-graph (1.80.0-1) ... 217s Setting up r-cran-ellipsis (0.3.2-2) ... 217s Setting up r-base-dev (4.3.3-2build1) ... 217s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 217s Setting up r-cran-stringr (1.5.1-1) ... 217s Setting up r-bioc-biocparallel (1.36.0-1) ... 217s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 217s Setting up texlive-bibtex-extra (2023.20240207-1) ... 217s Setting up r-cran-interp (1.1-6-1) ... 217s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 217s Setting up r-cran-memoise (2.0.1-1) ... 217s Setting up r-cran-promises (1.2.1+dfsg-1) ... 217s Setting up r-cran-htmltools (0.5.7-1) ... 217s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 217s Setting up r-bioc-xvector (0.42.0-1) ... 217s Setting up r-cran-sass (0.4.8+dfsg-1) ... 217s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 217s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 217s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 217s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 217s Setting up r-cran-fontawesome (0.5.2-1) ... 217s Setting up r-cran-latticeextra (0.6-30-1) ... 217s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 217s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 217s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 217s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 217s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 217s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 217s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 217s Setting up r-bioc-genomicalignments (1.38.2-1) ... 217s Setting up r-cran-bookdown (0.37+dfsg-1) ... 217s Setting up r-bioc-shortread (1.60.0-2) ... 217s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 217s Setting up autopkgtest-satdep (0) ... 217s Processing triggers for man-db (2.12.0-3) ... 218s Processing triggers for install-info (7.1-3) ... 218s Processing triggers for libc-bin (2.39-0ubuntu2) ... 218s Processing triggers for tex-common (6.18) ... 219s Running updmap-sys. This may take some time... done. 219s Running mktexlsr /var/lib/texmf ... done. 219s Building format(s) --all. 257s This may take some time... done. 271s (Reading database ... 122007 files and directories currently installed.) 271s Removing autopkgtest-satdep (0) ... 271s autopkgtest [17:47:32]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 271s autopkgtest [17:47:32]: test pkg-r-autopkgtest: [----------------------- 272s Test: Try to load the R library S4Vectors 272s 272s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 272s Copyright (C) 2024 The R Foundation for Statistical Computing 272s Platform: aarch64-unknown-linux-gnu (64-bit) 272s 272s R is free software and comes with ABSOLUTELY NO WARRANTY. 272s You are welcome to redistribute it under certain conditions. 272s Type 'license()' or 'licence()' for distribution details. 272s 272s R is a collaborative project with many contributors. 272s Type 'contributors()' for more information and 272s 'citation()' on how to cite R or R packages in publications. 272s 272s Type 'demo()' for some demos, 'help()' for on-line help, or 272s 'help.start()' for an HTML browser interface to help. 272s Type 'q()' to quit R. 272s 273s > library('S4Vectors') 273s Loading required package: stats4 273s Loading required package: BiocGenerics 273s 273s Attaching package: ‘BiocGenerics’ 273s 273s The following objects are masked from ‘package:stats’: 273s 273s IQR, mad, sd, var, xtabs 273s 273s The following objects are masked from ‘package:base’: 273s 273s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 273s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 273s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 273s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 273s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 273s table, tapply, union, unique, unsplit, which.max, which.min 273s 273s 273s Attaching package: ‘S4Vectors’ 273s 273s The following object is masked from ‘package:utils’: 273s 273s findMatches 273s 273s > 273s > 273s The following objects are masked from ‘package:base’: 273s 273s expand.grid, I, unname 273s 273s Other tests are currently unsupported! 273s They will be progressively added. 274s autopkgtest [17:47:35]: test pkg-r-autopkgtest: -----------------------] 274s pkg-r-autopkgtest PASS 274s autopkgtest [17:47:35]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 275s autopkgtest [17:47:36]: @@@@@@@@@@@@@@@@@@@@ summary 275s pkg-r-autopkgtest PASS 286s Creating nova instance adt-noble-arm64-r-bioc-s4vectors-20240316-174301-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...