0s autopkgtest [17:42:59]: starting date and time: 2024-03-16 17:42:59+0000 0s autopkgtest [17:42:59]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:42:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.tfyb1cya/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-s4arrays --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-20.secgroup --name adt-noble-arm64-r-bioc-s4arrays-20240316-174259-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 126s autopkgtest [17:45:05]: testbed dpkg architecture: arm64 126s autopkgtest [17:45:05]: testbed apt version: 2.7.12 126s autopkgtest [17:45:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup 127s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 127s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 127s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 127s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 128s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 128s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 128s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 128s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 128s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 128s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 128s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 128s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 128s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 130s Fetched 9060 kB in 2s (3905 kB/s) 130s Reading package lists... 134s Reading package lists... 134s Building dependency tree... 134s Reading state information... 135s Calculating upgrade... 135s The following packages will be REMOVED: 135s libglib2.0-0 libssl3 135s The following NEW packages will be installed: 135s libglib2.0-0t64 libssl3t64 xdg-user-dirs 135s The following packages have been kept back: 135s curl 135s The following packages will be upgraded: 135s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 135s ubuntu-minimal ubuntu-standard 135s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 135s Need to get 4613 kB of archives. 135s After this operation, 211 kB of additional disk space will be used. 135s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 136s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 136s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 136s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 136s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 136s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 136s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 136s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 136s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 137s Fetched 4613 kB in 1s (5703 kB/s) 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 137s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 137s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 137s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 137s udisks2 depends on libglib2.0-0 (>= 2.77.0). 137s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 137s python3-gi depends on libglib2.0-0 (>= 2.77.0). 137s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 137s netplan.io depends on libglib2.0-0 (>= 2.70.0). 137s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 137s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 137s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 137s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 137s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 137s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 137s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 137s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 137s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 137s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 137s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 137s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 137s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 137s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 137s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 137s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 137s fwupd depends on libglib2.0-0 (>= 2.79.0). 137s bolt depends on libglib2.0-0 (>= 2.56.0). 137s 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 137s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 137s Selecting previously unselected package libglib2.0-0t64:arm64. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 137s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 137s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 137s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 137s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 138s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 138s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 138s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 138s wget depends on libssl3 (>= 3.0.0). 138s u-boot-tools depends on libssl3 (>= 3.0.0). 138s tnftp depends on libssl3 (>= 3.0.0). 138s tcpdump depends on libssl3 (>= 3.0.0). 138s systemd-resolved depends on libssl3 (>= 3.0.0). 138s systemd depends on libssl3 (>= 3.0.0). 138s sudo depends on libssl3 (>= 3.0.0). 138s sbsigntool depends on libssl3 (>= 3.0.0). 138s rsync depends on libssl3 (>= 3.0.0). 138s python3-cryptography depends on libssl3 (>= 3.0.0). 138s openssh-server depends on libssl3 (>= 3.0.10). 138s openssh-client depends on libssl3 (>= 3.0.10). 138s mtd-utils depends on libssl3 (>= 3.0.0). 138s mokutil depends on libssl3 (>= 3.0.0). 138s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 138s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 138s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 138s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 138s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 138s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 138s libnvme1 depends on libssl3 (>= 3.0.0). 138s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 138s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 138s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 138s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 138s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 138s kmod depends on libssl3 (>= 3.0.0). 138s dhcpcd-base depends on libssl3 (>= 3.0.0). 138s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 138s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 138s Selecting previously unselected package libssl3t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 138s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 138s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 138s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 138s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 139s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 139s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 139s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 139s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 139s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 139s Unpacking ubuntu-minimal (1.536) over (1.535) ... 139s Selecting previously unselected package xdg-user-dirs. 139s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 139s Unpacking xdg-user-dirs (0.18-1) ... 139s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 139s Unpacking ubuntu-standard (1.536) over (1.535) ... 139s Setting up ubuntu-minimal (1.536) ... 139s Setting up xdg-user-dirs (0.18-1) ... 139s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 139s Setting up libtirpc-common (1.3.4+ds-1.1) ... 139s Setting up ubuntu-standard (1.536) ... 139s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 139s No schema files found: doing nothing. 139s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 139s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 139s Setting up openssl (3.0.13-0ubuntu1) ... 139s Setting up readline-common (8.2-3.1) ... 139s Processing triggers for man-db (2.12.0-3) ... 140s Processing triggers for install-info (7.1-3) ... 141s Processing triggers for libc-bin (2.39-0ubuntu2) ... 141s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 144s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 144s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 144s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 144s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 146s Reading package lists... 146s Reading package lists... 146s Building dependency tree... 146s Reading state information... 147s Calculating upgrade... 147s The following packages have been kept back: 147s curl 147s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 147s Reading package lists... 148s Building dependency tree... 148s Reading state information... 148s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 151s autopkgtest [17:45:30]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 151s autopkgtest [17:45:30]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-s4arrays 153s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4arrays 1.2.0+dfsg-1 (dsc) [2244 B] 153s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4arrays 1.2.0+dfsg-1 (tar) [51.5 kB] 153s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-s4arrays 1.2.0+dfsg-1 (diff) [5116 B] 154s gpgv: Signature made Thu Nov 30 00:23:22 2023 UTC 154s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 154s gpgv: issuer "plessy@debian.org" 154s gpgv: Can't check signature: No public key 154s dpkg-source: warning: cannot verify inline signature for ./r-bioc-s4arrays_1.2.0+dfsg-1.dsc: no acceptable signature found 154s autopkgtest [17:45:33]: testing package r-bioc-s4arrays version 1.2.0+dfsg-1 155s autopkgtest [17:45:34]: build not needed 157s autopkgtest [17:45:36]: test pkg-r-autopkgtest: preparing testbed 159s Reading package lists... 160s Building dependency tree... 160s Reading state information... 160s Starting pkgProblemResolver with broken count: 0 160s Starting 2 pkgProblemResolver with broken count: 0 160s Done 161s The following additional packages will be installed: 161s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 161s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 161s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 161s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 161s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 161s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 161s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 161s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 161s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 161s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 161s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 161s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 161s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 161s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 161s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 161s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 161s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 161s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 161s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 161s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 161s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 161s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 161s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 161s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 161s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 161s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 161s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 161s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 161s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 161s pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel 161s r-bioc-biocstyle r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics 161s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray r-bioc-xvector 161s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 161s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 161s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 161s r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate 161s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 161s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-highr 161s r-cran-htmltools r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr 161s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 161s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 161s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 161s r-cran-pkgload r-cran-praise r-cran-processx r-cran-promises r-cran-ps 161s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang 161s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny r-cran-snow 161s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat 161s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 161s r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 161s tex-common texlive-base texlive-bibtex-extra texlive-binaries 161s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 161s Suggested packages: 161s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 161s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 161s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 161s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 161s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 161s libboost-context1.83-dev libboost-contract1.83-dev 161s libboost-coroutine1.83-dev libboost-date-time1.83-dev 161s libboost-exception1.83-dev libboost-fiber1.83-dev 161s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 161s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 161s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 161s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 161s libboost-numpy1.83-dev libboost-program-options1.83-dev 161s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 161s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 161s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 161s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 161s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 161s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 161s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 161s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 161s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 161s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 161s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 161s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 161s r-bioc-biobase r-bioc-genomicranges r-bioc-biostrings r-bioc-rsamtools 161s r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit 161s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation 161s r-bioc-genomicalignments r-bioc-shortread r-cran-batchtools 161s r-cran-data.table r-bioc-hdf5array r-bioc-genefilter 161s r-bioc-summarizedexperiment r-cran-lobstr r-bioc-delayedmatrixstats 161s r-bioc-genomicfeatures r-bioc-sparsematrixstats r-bioc-graph r-cran-covr 161s r-cran-spelling r-cran-rstudioapi r-cran-markdown r-cran-getopt r-cran-httr 161s r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable r-cran-ggplot2 161s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 161s r-cran-units r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-rmpi 161s r-cran-rlecuyer r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-purrr 161s r-cran-tidyr r-cran-plm r-cran-zoo debhelper ghostscript gv 161s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 161s hintview texlive-latex-base-doc wp2latex 161s Recommended packages: 161s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 161s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-curl 161s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 161s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot 161s r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery 161s r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress 161s r-cran-scales r-cran-gh r-cran-spelling r-cran-unitizer r-cran-dplyr 161s r-cran-rsvg r-cran-survival r-cran-dbi r-cran-rsqlite r-cran-cairo 161s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 161s r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate 161s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 161s r-cran-tidyverse r-cran-r.devices r-cran-lubridate r-cran-bitops 161s r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-future r-cran-purrr 161s r-cran-pingr r-cran-usethis r-cran-dygraphs r-cran-data.table 161s r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown 161s r-cran-zeallot r-cran-renv r-cran-runit lmodern dvisvgm 161s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 161s x11-xserver-utils 161s The following packages will be REMOVED: 161s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 161s The following NEW packages will be installed: 161s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 161s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 161s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 161s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 161s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 161s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 161s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 161s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 161s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 161s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 161s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 161s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 161s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 161s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 161s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 161s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 161s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 161s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 161s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 161s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 161s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 161s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 161s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 161s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 161s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 161s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 161s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 161s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 161s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 161s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 161s r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocstyle r-bioc-delayedarray 161s r-bioc-iranges r-bioc-matrixgenerics r-bioc-s4arrays r-bioc-s4vectors 161s r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc r-cran-abind 161s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio 161s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 161s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj 161s r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 161s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 161s r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools 161s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r 161s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 161s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-pillar 161s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 161s r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6 161s r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang r-cran-rmarkdown 161s r-cran-rprojroot r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 161s r-cran-stringi r-cran-stringr r-cran-testthat r-cran-tibble r-cran-tinytex 161s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr r-cran-xfun r-cran-xtable 161s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 161s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 161s xdg-utils zip zlib1g-dev 161s The following packages will be upgraded: 161s curl 161s 1 upgraded, 249 newly installed, 5 to remove and 0 not upgraded. 161s Need to get 352 MB/352 MB of archives. 161s After this operation, 1235 MB of additional disk space will be used. 161s Get:1 /tmp/autopkgtest.r7BOfB/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 162s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 162s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 162s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 162s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 162s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 162s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 162s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 162s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 162s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 162s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 162s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 162s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 162s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 162s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 162s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 162s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 163s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 163s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 163s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 163s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 163s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 163s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 163s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 163s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 163s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 163s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 163s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 163s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 163s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 163s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 163s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 163s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 163s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 163s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 163s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 164s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 164s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 164s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 164s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 164s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 164s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 164s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 164s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 164s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 164s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 164s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 164s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 164s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 164s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 164s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 164s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 164s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 164s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 164s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 164s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 164s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 164s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 164s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 164s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 164s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 164s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 164s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 164s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 165s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 165s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 165s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 165s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 165s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 165s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 165s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 165s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 165s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 165s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 165s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 165s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 165s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 165s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 165s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 165s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 165s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 165s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 165s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 165s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 165s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 165s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 165s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 165s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 165s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 165s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 165s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 165s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 165s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 165s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 165s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 165s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 165s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 165s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 165s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 165s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 165s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 165s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 165s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 166s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 166s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 166s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 166s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 166s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 166s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 166s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 166s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 166s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 166s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 166s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 166s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 166s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 166s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 166s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 166s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 166s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 166s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 166s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 166s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 166s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 166s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 166s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 166s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 166s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 166s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 166s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 166s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 166s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 166s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 166s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 166s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 166s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 166s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 166s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 166s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 166s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 166s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 166s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 166s Get:143 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 167s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 167s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 167s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 167s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 167s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 167s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 167s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 168s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 168s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 168s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 168s Get:154 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 168s Get:155 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 168s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 168s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 169s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 169s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 169s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 169s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 169s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 169s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 169s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 169s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 169s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 169s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 169s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 169s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 169s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 169s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 169s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 169s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 169s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 169s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 169s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 169s Get:177 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 169s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 169s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 169s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 169s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 169s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 169s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 169s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 169s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 169s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 169s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 169s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 169s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 169s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 169s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 169s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 169s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 169s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 169s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 169s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 169s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 169s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 169s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 169s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 170s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 170s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 170s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 170s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 170s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 170s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 170s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 170s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 170s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 170s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 170s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 170s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 170s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 170s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 170s Get:215 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 170s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 171s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 171s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 171s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 173s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 173s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 173s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 173s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 173s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 173s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 173s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 173s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 173s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 173s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 173s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 173s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 173s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 173s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 173s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 173s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 173s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 173s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 173s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 173s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 173s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 173s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 173s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 173s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 173s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 173s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 173s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 173s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 173s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 173s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 173s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 177s Preconfiguring packages ... 178s Fetched 352 MB in 12s (29.5 MB/s) 178s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 178s wget depends on libpsl5 (>= 0.16.0). 178s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 178s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 178s 178s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 178s Removing libpsl5:arm64 (0.21.2-1build1) ... 179s Selecting previously unselected package libpsl5t64:arm64. 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 179s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 179s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 179s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 179s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 179s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 179s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 179s Selecting previously unselected package libcurl4t64:arm64. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 180s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 180s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 180s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 180s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 180s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 180s 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 180s Removing libpng16-16:arm64 (1.6.43-1) ... 180s Selecting previously unselected package libpng16-16t64:arm64. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 180s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 180s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 180s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 180s parted depends on libreadline8 (>= 6.0). 180s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 180s gpgsm depends on libreadline8 (>= 6.0). 180s gpgconf depends on libreadline8 (>= 6.0). 180s gpg depends on libreadline8 (>= 6.0). 180s gawk depends on libreadline8 (>= 6.0). 180s fdisk depends on libreadline8 (>= 6.0). 180s 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 180s Removing libreadline8:arm64 (8.2-3) ... 180s Selecting previously unselected package libreadline8t64:arm64. 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 180s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 180s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 180s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 180s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 180s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 180s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 180s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 180s lsof depends on libtirpc3 (>= 1.0.2). 180s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 180s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 180s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 180s iproute2 depends on libtirpc3 (>= 1.0.2). 180s 180s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 180s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 180s Selecting previously unselected package libtirpc3t64:arm64. 181s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 181s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 181s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 181s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 181s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 181s Selecting previously unselected package libc-dev-bin. 181s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 181s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 181s Selecting previously unselected package linux-libc-dev:arm64. 181s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 181s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 181s Selecting previously unselected package libcrypt-dev:arm64. 181s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 181s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 181s Selecting previously unselected package libtirpc-dev:arm64. 181s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 181s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 181s Selecting previously unselected package libnsl-dev:arm64. 181s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 181s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 181s Selecting previously unselected package rpcsvc-proto. 181s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 181s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 181s Selecting previously unselected package libc6-dev:arm64. 181s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 181s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 181s Selecting previously unselected package libisl23:arm64. 181s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 181s Unpacking libisl23:arm64 (0.26-3) ... 182s Selecting previously unselected package libmpc3:arm64. 182s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 182s Unpacking libmpc3:arm64 (1.3.1-1) ... 182s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 182s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 182s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package cpp-13. 182s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 182s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 182s Selecting previously unselected package cpp-aarch64-linux-gnu. 182s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 182s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 182s Selecting previously unselected package cpp. 182s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 182s Unpacking cpp (4:13.2.0-7ubuntu1) ... 182s Selecting previously unselected package libcc1-0:arm64. 182s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 182s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libgomp1:arm64. 182s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 182s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libitm1:arm64. 182s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 182s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libatomic1:arm64. 182s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 182s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 182s Selecting previously unselected package libasan8:arm64. 183s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 183s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package liblsan0:arm64. 183s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 183s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package libtsan2:arm64. 183s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 183s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package libubsan1:arm64. 183s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 183s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package libhwasan0:arm64. 183s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 183s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 183s Selecting previously unselected package libgcc-13-dev:arm64. 183s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 183s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 183s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 183s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 183s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 184s Selecting previously unselected package gcc-13. 184s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 184s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 184s Selecting previously unselected package gcc-aarch64-linux-gnu. 184s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 184s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 184s Selecting previously unselected package gcc. 184s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 184s Unpacking gcc (4:13.2.0-7ubuntu1) ... 184s Selecting previously unselected package libstdc++-13-dev:arm64. 184s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 184s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package g++-13-aarch64-linux-gnu. 185s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package g++-13. 185s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 185s Unpacking g++-13 (13.2.0-17ubuntu2) ... 185s Selecting previously unselected package g++-aarch64-linux-gnu. 185s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package g++. 185s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 185s Unpacking g++ (4:13.2.0-7ubuntu1) ... 185s Selecting previously unselected package build-essential. 185s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 185s Unpacking build-essential (12.10ubuntu1) ... 186s Selecting previously unselected package dctrl-tools. 186s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 186s Unpacking dctrl-tools (2.24-3build2) ... 186s Selecting previously unselected package fonts-dejavu-mono. 186s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-mono (2.37-8) ... 186s Selecting previously unselected package fonts-dejavu-core. 186s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 186s Unpacking fonts-dejavu-core (2.37-8) ... 186s Selecting previously unselected package fontconfig-config. 186s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 186s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 186s Selecting previously unselected package libfontconfig1:arm64. 186s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 186s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 186s Selecting previously unselected package fontconfig. 187s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 187s Unpacking fontconfig (2.15.0-1ubuntu1) ... 187s Selecting previously unselected package fonts-font-awesome. 187s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 187s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 187s Selecting previously unselected package fonts-glyphicons-halflings. 188s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 188s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 188s Selecting previously unselected package fonts-lmodern. 188s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 188s Unpacking fonts-lmodern (2.005-1) ... 188s Selecting previously unselected package fonts-mathjax. 188s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 188s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 188s Selecting previously unselected package libgfortran5:arm64. 188s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 188s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 188s Selecting previously unselected package libgfortran-13-dev:arm64. 188s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 188s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 189s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 189s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gfortran-13. 189s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 189s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 189s Selecting previously unselected package gfortran-aarch64-linux-gnu. 189s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 189s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Selecting previously unselected package gfortran. 189s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 189s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 190s Selecting previously unselected package icu-devtools. 190s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 190s Unpacking icu-devtools (74.2-1ubuntu1) ... 190s Selecting previously unselected package javascript-common. 190s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 190s Unpacking javascript-common (11+nmu1) ... 190s Selecting previously unselected package libio-string-perl. 190s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 190s Unpacking libio-string-perl (1.08-4) ... 190s Selecting previously unselected package liblatex-tounicode-perl. 190s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 190s Unpacking liblatex-tounicode-perl (0.54-2) ... 191s Selecting previously unselected package libbibtex-parser-perl. 191s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 191s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 191s Selecting previously unselected package libblas3:arm64. 191s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 191s Unpacking libblas3:arm64 (3.12.0-3) ... 191s Selecting previously unselected package libblas-dev:arm64. 191s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 191s Unpacking libblas-dev:arm64 (3.12.0-3) ... 191s Selecting previously unselected package libboost1.83-dev:arm64. 191s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 191s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 194s Selecting previously unselected package libboost-dev:arm64. 194s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 194s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 194s Selecting previously unselected package libbz2-dev:arm64. 194s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 194s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 194s Selecting previously unselected package libpixman-1-0:arm64. 194s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 194s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 194s Selecting previously unselected package libxcb-render0:arm64. 194s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 194s Unpacking libxcb-render0:arm64 (1.15-1) ... 194s Selecting previously unselected package libxcb-shm0:arm64. 194s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 194s Unpacking libxcb-shm0:arm64 (1.15-1) ... 194s Selecting previously unselected package libxrender1:arm64. 194s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 194s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 194s Selecting previously unselected package libcairo2:arm64. 194s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 194s Unpacking libcairo2:arm64 (1.18.0-1) ... 195s Selecting previously unselected package libdatrie1:arm64. 195s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 195s Unpacking libdatrie1:arm64 (0.2.13-3) ... 195s Selecting previously unselected package libdeflate0:arm64. 195s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 195s Unpacking libdeflate0:arm64 (1.19-1) ... 195s Selecting previously unselected package libgraphite2-3:arm64. 195s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 195s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 195s Selecting previously unselected package libharfbuzz0b:arm64. 195s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 195s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 195s Selecting previously unselected package x11-common. 195s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 195s Unpacking x11-common (1:7.7+23ubuntu2) ... 195s Selecting previously unselected package libice6:arm64. 195s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 195s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 195s Selecting previously unselected package libicu-dev:arm64. 196s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 196s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 196s Selecting previously unselected package libjpeg-turbo8:arm64. 196s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 196s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 196s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 196s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 196s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 196s Selecting previously unselected package libjpeg8:arm64. 196s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg8-dev:arm64. 196s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjpeg-dev:arm64. 196s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 196s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 196s Selecting previously unselected package libjs-bootstrap. 197s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 197s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 197s Selecting previously unselected package libjs-popper.js. 197s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 197s Unpacking libjs-popper.js (1.16.1+ds-6) ... 197s Selecting previously unselected package libjs-bootstrap4. 197s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 197s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 197s Selecting previously unselected package libjs-d3. 197s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 197s Unpacking libjs-d3 (3.5.17-4) ... 197s Selecting previously unselected package libjs-es5-shim. 198s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 198s Unpacking libjs-es5-shim (4.6.7-2) ... 198s Selecting previously unselected package libjs-highlight.js. 198s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 198s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 198s Selecting previously unselected package libjs-jquery. 198s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 198s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 198s Selecting previously unselected package libjs-jquery-datatables. 198s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 198s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 198s Selecting previously unselected package libjs-sifter.js. 198s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 198s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 198s Selecting previously unselected package libjs-microplugin.js. 199s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 199s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 199s Selecting previously unselected package libjs-jquery-selectize.js. 199s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 199s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 199s Selecting previously unselected package libjs-jquery-ui. 199s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 199s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 199s Selecting previously unselected package libjs-json. 199s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 199s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 199s Selecting previously unselected package libjs-lunr. 200s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 200s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 200s Selecting previously unselected package libjs-prettify. 200s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 200s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 200s Selecting previously unselected package libkpathsea6:arm64. 202s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 202s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 202s Selecting previously unselected package liblapack3:arm64. 202s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 202s Unpacking liblapack3:arm64 (3.12.0-3) ... 202s Selecting previously unselected package liblapack-dev:arm64. 203s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 203s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 203s Selecting previously unselected package liblerc4:arm64. 203s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 203s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 204s Selecting previously unselected package liblua5.4-0:arm64. 204s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 204s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 204s Selecting previously unselected package libncurses-dev:arm64. 204s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 204s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 204s Selecting previously unselected package libthai-data. 205s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 205s Unpacking libthai-data (0.1.29-2) ... 205s Selecting previously unselected package libthai0:arm64. 205s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 205s Unpacking libthai0:arm64 (0.1.29-2) ... 205s Selecting previously unselected package libpango-1.0-0:arm64. 206s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangoft2-1.0-0:arm64. 206s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpangocairo-1.0-0:arm64. 206s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 206s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 206s Selecting previously unselected package libpaper1:arm64. 206s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 206s Unpacking libpaper1:arm64 (1.1.29) ... 206s Selecting previously unselected package libpaper-utils. 206s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 206s Unpacking libpaper-utils (1.1.29) ... 206s Selecting previously unselected package libpcre2-16-0:arm64. 206s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 206s Selecting previously unselected package libpcre2-32-0:arm64. 206s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 206s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 207s Selecting previously unselected package libpcre2-posix3:arm64. 207s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 207s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 207s Selecting previously unselected package libpcre2-dev:arm64. 207s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 207s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 207s Selecting previously unselected package libpkgconf3:arm64. 207s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 207s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 207s Selecting previously unselected package zlib1g-dev:arm64. 207s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 207s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 207s Selecting previously unselected package libpng-dev:arm64. 207s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 207s Unpacking libpng-dev:arm64 (1.6.43-3) ... 207s Selecting previously unselected package libpotrace0:arm64. 207s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 207s Unpacking libpotrace0:arm64 (1.16-2) ... 208s Selecting previously unselected package libptexenc1:arm64. 208s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 208s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 208s Selecting previously unselected package libreadline-dev:arm64. 208s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 208s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 209s Selecting previously unselected package libsharpyuv0:arm64. 209s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 209s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 209s Selecting previously unselected package libsm6:arm64. 209s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 209s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 209s Selecting previously unselected package libsynctex2:arm64. 209s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 209s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 209s Selecting previously unselected package libtcl8.6:arm64. 209s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 209s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 210s Selecting previously unselected package libteckit0:arm64. 210s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 210s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 210s Selecting previously unselected package libtexlua53-5:arm64. 210s Preparing to unpack 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libxss1:arm64 (1:1.2.3-1build2) ... 211s Selecting previously unselected package libtk8.6:arm64. 211s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 211s Unpacking libtk8.6:arm64 (8.6.13-2) ... 211s Selecting previously unselected package libxt6t64:arm64. 212s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 212s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 212s Selecting previously unselected package libxmu6:arm64. 212s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 212s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 212s Selecting previously unselected package libxpm4:arm64. 212s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 212s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 212s Selecting previously unselected package libxaw7:arm64. 212s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 212s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 212s Selecting previously unselected package libxi6:arm64. 212s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 212s Unpacking libxi6:arm64 (2:1.8.1-1) ... 212s Selecting previously unselected package libzzip-0-13:arm64. 213s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 213s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 213s Selecting previously unselected package zip. 213s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 213s Unpacking zip (3.0-13) ... 213s Selecting previously unselected package unzip. 214s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 214s Unpacking unzip (6.0-28ubuntu3) ... 215s Selecting previously unselected package xdg-utils. 217s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 217s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 217s Selecting previously unselected package r-base-core. 217s Preparing to unpack .../136-r-base-core_4.3.3-2build1_arm64.deb ... 217s Unpacking r-base-core (4.3.3-2build1) ... 217s Selecting previously unselected package r-cran-littler. 217s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 217s Unpacking r-cran-littler (0.3.19-1) ... 218s Selecting previously unselected package littler. 218s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 218s Unpacking littler (0.3.19-1) ... 218s Selecting previously unselected package node-bootstrap-sass. 218s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 218s Unpacking node-bootstrap-sass (3.4.3-2) ... 218s Selecting previously unselected package node-html5shiv. 218s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 218s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 218s Selecting previously unselected package node-normalize.css. 218s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 218s Unpacking node-normalize.css (8.0.1-5) ... 219s Selecting previously unselected package pandoc-data. 219s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 219s Unpacking pandoc-data (3.1.3-1) ... 219s Selecting previously unselected package pandoc. 219s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 219s Unpacking pandoc (3.1.3+ds-2) ... 221s Selecting previously unselected package pkgconf-bin. 221s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 221s Unpacking pkgconf-bin (1.8.1-2) ... 221s Selecting previously unselected package pkgconf:arm64. 221s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 221s Unpacking pkgconf:arm64 (1.8.1-2) ... 221s Selecting previously unselected package pkg-config:arm64. 221s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 221s Unpacking pkg-config:arm64 (1.8.1-2) ... 221s Selecting previously unselected package liblzma-dev:arm64. 222s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 222s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 222s Selecting previously unselected package r-base-dev. 222s Preparing to unpack .../148-r-base-dev_4.3.3-2build1_all.deb ... 222s Unpacking r-base-dev (4.3.3-2build1) ... 222s Selecting previously unselected package pkg-r-autopkgtest. 222s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 222s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 222s Selecting previously unselected package r-bioc-biocgenerics. 222s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 222s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 222s Selecting previously unselected package r-cran-formatr. 222s Preparing to unpack .../151-r-cran-formatr_1.14-1_all.deb ... 222s Unpacking r-cran-formatr (1.14-1) ... 222s Selecting previously unselected package r-cran-lambda.r. 223s Preparing to unpack .../152-r-cran-lambda.r_1.2.4-2build1_all.deb ... 223s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 223s Selecting previously unselected package r-cran-futile.options. 223s Preparing to unpack .../153-r-cran-futile.options_1.0.1-3build1_all.deb ... 223s Unpacking r-cran-futile.options (1.0.1-3build1) ... 223s Selecting previously unselected package r-cran-futile.logger. 223s Preparing to unpack .../154-r-cran-futile.logger_1.4.3-4build1_all.deb ... 223s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 223s Selecting previously unselected package r-cran-snow. 223s Preparing to unpack .../155-r-cran-snow_1%3a0.4.4-2_all.deb ... 223s Unpacking r-cran-snow (1:0.4.4-2) ... 223s Selecting previously unselected package r-cran-codetools. 223s Preparing to unpack .../156-r-cran-codetools_0.2-19-1_all.deb ... 223s Unpacking r-cran-codetools (0.2-19-1) ... 223s Selecting previously unselected package r-cran-bh. 223s Preparing to unpack .../157-r-cran-bh_1.84.0-1_all.deb ... 223s Unpacking r-cran-bh (1.84.0-1) ... 223s Selecting previously unselected package r-cran-cpp11. 223s Preparing to unpack .../158-r-cran-cpp11_0.4.7-1_all.deb ... 223s Unpacking r-cran-cpp11 (0.4.7-1) ... 224s Selecting previously unselected package r-bioc-biocparallel. 224s Preparing to unpack .../159-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 224s Unpacking r-bioc-biocparallel (1.36.0-1) ... 224s Selecting previously unselected package r-cran-base64enc. 224s Preparing to unpack .../160-r-cran-base64enc_0.1-3-3_arm64.deb ... 224s Unpacking r-cran-base64enc (0.1-3-3) ... 224s Selecting previously unselected package r-cran-digest. 224s Preparing to unpack .../161-r-cran-digest_0.6.34-1_arm64.deb ... 224s Unpacking r-cran-digest (0.6.34-1) ... 225s Selecting previously unselected package r-cran-rlang. 225s Preparing to unpack .../162-r-cran-rlang_1.1.3-1_arm64.deb ... 225s Unpacking r-cran-rlang (1.1.3-1) ... 225s Selecting previously unselected package r-cran-ellipsis. 225s Preparing to unpack .../163-r-cran-ellipsis_0.3.2-2_arm64.deb ... 225s Unpacking r-cran-ellipsis (0.3.2-2) ... 225s Selecting previously unselected package r-cran-fastmap. 225s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 225s Unpacking r-cran-fastmap (1.1.1-1) ... 225s Selecting previously unselected package r-cran-htmltools. 225s Preparing to unpack .../165-r-cran-htmltools_0.5.7-1_arm64.deb ... 225s Unpacking r-cran-htmltools (0.5.7-1) ... 225s Selecting previously unselected package r-cran-evaluate. 225s Preparing to unpack .../166-r-cran-evaluate_0.23-1_all.deb ... 225s Unpacking r-cran-evaluate (0.23-1) ... 225s Selecting previously unselected package r-cran-xfun. 225s Preparing to unpack .../167-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 225s Unpacking r-cran-xfun (0.41+dfsg-1) ... 225s Selecting previously unselected package r-cran-highr. 225s Preparing to unpack .../168-r-cran-highr_0.10+dfsg-1_all.deb ... 225s Unpacking r-cran-highr (0.10+dfsg-1) ... 225s Selecting previously unselected package r-cran-yaml. 226s Preparing to unpack .../169-r-cran-yaml_2.3.8-1_arm64.deb ... 226s Unpacking r-cran-yaml (2.3.8-1) ... 227s Selecting previously unselected package libjs-mathjax. 227s Preparing to unpack .../170-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 228s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 230s Selecting previously unselected package r-cran-knitr. 231s Preparing to unpack .../171-r-cran-knitr_1.45+dfsg-1_all.deb ... 231s Unpacking r-cran-knitr (1.45+dfsg-1) ... 232s Selecting previously unselected package r-cran-cachem. 232s Preparing to unpack .../172-r-cran-cachem_1.0.8-1_arm64.deb ... 232s Unpacking r-cran-cachem (1.0.8-1) ... 233s Selecting previously unselected package r-cran-jquerylib. 233s Preparing to unpack .../173-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 233s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 233s Selecting previously unselected package r-cran-jsonlite. 234s Preparing to unpack .../174-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 234s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 234s Selecting previously unselected package r-cran-cli. 235s Preparing to unpack .../175-r-cran-cli_3.6.2-1_arm64.deb ... 235s Unpacking r-cran-cli (3.6.2-1) ... 235s Selecting previously unselected package r-cran-glue. 235s Preparing to unpack .../176-r-cran-glue_1.7.0-1_arm64.deb ... 235s Unpacking r-cran-glue (1.7.0-1) ... 235s Selecting previously unselected package r-cran-lifecycle. 235s Preparing to unpack .../177-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 235s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 236s Selecting previously unselected package r-cran-memoise. 236s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 236s Unpacking r-cran-memoise (2.0.1-1) ... 236s Selecting previously unselected package r-cran-mime. 236s Preparing to unpack .../179-r-cran-mime_0.12-1_arm64.deb ... 236s Unpacking r-cran-mime (0.12-1) ... 236s Selecting previously unselected package r-cran-fs. 237s Preparing to unpack .../180-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 237s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 237s Selecting previously unselected package r-cran-r6. 237s Preparing to unpack .../181-r-cran-r6_2.5.1-1_all.deb ... 237s Unpacking r-cran-r6 (2.5.1-1) ... 237s Selecting previously unselected package r-cran-rappdirs. 237s Preparing to unpack .../182-r-cran-rappdirs_0.3.3-1_arm64.deb ... 237s Unpacking r-cran-rappdirs (0.3.3-1) ... 237s Selecting previously unselected package r-cran-sass. 238s Preparing to unpack .../183-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 238s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 238s Selecting previously unselected package r-cran-bslib. 238s Preparing to unpack .../184-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 238s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 238s Selecting previously unselected package r-cran-fontawesome. 239s Preparing to unpack .../185-r-cran-fontawesome_0.5.2-1_all.deb ... 239s Unpacking r-cran-fontawesome (0.5.2-1) ... 239s Selecting previously unselected package r-cran-magrittr. 239s Preparing to unpack .../186-r-cran-magrittr_2.0.3-1_arm64.deb ... 239s Unpacking r-cran-magrittr (2.0.3-1) ... 239s Selecting previously unselected package r-cran-stringi. 240s Preparing to unpack .../187-r-cran-stringi_1.8.3-1_arm64.deb ... 240s Unpacking r-cran-stringi (1.8.3-1) ... 240s Selecting previously unselected package r-cran-vctrs. 240s Preparing to unpack .../188-r-cran-vctrs_0.6.5-1_arm64.deb ... 240s Unpacking r-cran-vctrs (0.6.5-1) ... 240s Selecting previously unselected package r-cran-stringr. 240s Preparing to unpack .../189-r-cran-stringr_1.5.1-1_all.deb ... 240s Unpacking r-cran-stringr (1.5.1-1) ... 240s Selecting previously unselected package r-cran-tinytex. 241s Preparing to unpack .../190-r-cran-tinytex_0.49-1_all.deb ... 241s Unpacking r-cran-tinytex (0.49-1) ... 241s Selecting previously unselected package libjs-modernizr. 241s Preparing to unpack .../191-libjs-modernizr_2.6.2+ds1-5_all.deb ... 241s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 242s Selecting previously unselected package r-cran-pkgkitten. 242s Preparing to unpack .../192-r-cran-pkgkitten_0.2.3-1_all.deb ... 242s Unpacking r-cran-pkgkitten (0.2.3-1) ... 242s Selecting previously unselected package r-cran-rcpp. 243s Preparing to unpack .../193-r-cran-rcpp_1.0.12-1_arm64.deb ... 243s Unpacking r-cran-rcpp (1.0.12-1) ... 243s Selecting previously unselected package r-cran-later. 243s Preparing to unpack .../194-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 243s Unpacking r-cran-later (1.3.2+dfsg-1) ... 244s Selecting previously unselected package r-cran-promises. 244s Preparing to unpack .../195-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 244s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 244s Selecting previously unselected package r-cran-httpuv. 244s Preparing to unpack .../196-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 244s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 244s Selecting previously unselected package r-cran-xtable. 245s Preparing to unpack .../197-r-cran-xtable_1%3a1.8-4-2_all.deb ... 245s Unpacking r-cran-xtable (1:1.8-4-2) ... 245s Selecting previously unselected package r-cran-sourcetools. 246s Preparing to unpack .../198-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 246s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 248s Selecting previously unselected package r-cran-crayon. 252s Preparing to unpack .../199-r-cran-crayon_1.5.2-1_all.deb ... 252s Unpacking r-cran-crayon (1.5.2-1) ... 252s Selecting previously unselected package r-cran-withr. 255s Preparing to unpack .../200-r-cran-withr_2.5.0-1_all.deb ... 255s Unpacking r-cran-withr (2.5.0-1) ... 255s Selecting previously unselected package r-cran-commonmark. 256s Preparing to unpack .../201-r-cran-commonmark_1.9.1-1_arm64.deb ... 256s Unpacking r-cran-commonmark (1.9.1-1) ... 256s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 257s Preparing to unpack .../202-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 257s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 257s Selecting previously unselected package r-cran-shiny. 257s Preparing to unpack .../203-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 257s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 257s Selecting previously unselected package r-cran-rmarkdown. 257s Preparing to unpack .../204-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 257s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 258s Selecting previously unselected package r-cran-bookdown. 258s Preparing to unpack .../205-r-cran-bookdown_0.37+dfsg-1_all.deb ... 258s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 258s Selecting previously unselected package r-cran-biocmanager. 258s Preparing to unpack .../206-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 258s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 258s Selecting previously unselected package tex-common. 258s Preparing to unpack .../207-tex-common_6.18_all.deb ... 258s Unpacking tex-common (6.18) ... 258s Selecting previously unselected package t1utils. 258s Preparing to unpack .../208-t1utils_1.41-4build2_arm64.deb ... 258s Unpacking t1utils (1.41-4build2) ... 258s Selecting previously unselected package texlive-binaries. 258s Preparing to unpack .../209-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 258s Unpacking texlive-binaries (2023.20230311.66589-9) ... 259s Selecting previously unselected package texlive-base. 259s Preparing to unpack .../210-texlive-base_2023.20240207-1_all.deb ... 259s Unpacking texlive-base (2023.20240207-1) ... 260s Selecting previously unselected package texlive-latex-base. 260s Preparing to unpack .../211-texlive-latex-base_2023.20240207-1_all.deb ... 260s Unpacking texlive-latex-base (2023.20240207-1) ... 261s Selecting previously unselected package texlive-bibtex-extra. 261s Preparing to unpack .../212-texlive-bibtex-extra_2023.20240207-1_all.deb ... 261s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 263s Selecting previously unselected package r-bioc-biocstyle. 263s Preparing to unpack .../213-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 263s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 263s Selecting previously unselected package r-cran-lattice. 263s Preparing to unpack .../214-r-cran-lattice_0.22-5-1_arm64.deb ... 263s Unpacking r-cran-lattice (0.22-5-1) ... 263s Selecting previously unselected package r-cran-matrix. 264s Preparing to unpack .../215-r-cran-matrix_1.6-5-1_arm64.deb ... 264s Unpacking r-cran-matrix (1.6-5-1) ... 264s Selecting previously unselected package r-cran-matrixstats. 264s Preparing to unpack .../216-r-cran-matrixstats_1.2.0-1_arm64.deb ... 264s Unpacking r-cran-matrixstats (1.2.0-1) ... 264s Selecting previously unselected package r-bioc-matrixgenerics. 264s Preparing to unpack .../217-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 264s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 264s Selecting previously unselected package r-bioc-s4vectors. 264s Preparing to unpack .../218-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 264s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 264s Selecting previously unselected package r-bioc-iranges. 264s Preparing to unpack .../219-r-bioc-iranges_2.36.0-1_arm64.deb ... 264s Unpacking r-bioc-iranges (2.36.0-1) ... 264s Selecting previously unselected package r-cran-abind. 264s Preparing to unpack .../220-r-cran-abind_1.4-5-2_all.deb ... 264s Unpacking r-cran-abind (1.4-5-2) ... 264s Selecting previously unselected package r-bioc-s4arrays. 264s Preparing to unpack .../221-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 264s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 264s Selecting previously unselected package r-bioc-zlibbioc. 264s Preparing to unpack .../222-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 264s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 264s Selecting previously unselected package r-bioc-xvector. 264s Preparing to unpack .../223-r-bioc-xvector_0.42.0-1_arm64.deb ... 264s Unpacking r-bioc-xvector (0.42.0-1) ... 264s Selecting previously unselected package r-bioc-sparsearray. 264s Preparing to unpack .../224-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 264s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 264s Selecting previously unselected package r-bioc-delayedarray. 265s Preparing to unpack .../225-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 265s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 265s Selecting previously unselected package r-cran-brio. 265s Preparing to unpack .../226-r-cran-brio_1.1.4-1_arm64.deb ... 265s Unpacking r-cran-brio (1.1.4-1) ... 265s Selecting previously unselected package r-cran-ps. 265s Preparing to unpack .../227-r-cran-ps_1.7.6-1_arm64.deb ... 265s Unpacking r-cran-ps (1.7.6-1) ... 265s Selecting previously unselected package r-cran-processx. 265s Preparing to unpack .../228-r-cran-processx_3.8.3-1_arm64.deb ... 265s Unpacking r-cran-processx (3.8.3-1) ... 265s Selecting previously unselected package r-cran-callr. 265s Preparing to unpack .../229-r-cran-callr_3.7.3-2_all.deb ... 265s Unpacking r-cran-callr (3.7.3-2) ... 265s Selecting previously unselected package r-cran-desc. 265s Preparing to unpack .../230-r-cran-desc_1.4.3-1_all.deb ... 265s Unpacking r-cran-desc (1.4.3-1) ... 265s Selecting previously unselected package r-cran-diffobj. 265s Preparing to unpack .../231-r-cran-diffobj_0.3.5-1_arm64.deb ... 265s Unpacking r-cran-diffobj (0.3.5-1) ... 266s Selecting previously unselected package r-cran-fansi. 266s Preparing to unpack .../232-r-cran-fansi_1.0.5-1_arm64.deb ... 266s Unpacking r-cran-fansi (1.0.5-1) ... 266s Selecting previously unselected package r-cran-utf8. 266s Preparing to unpack .../233-r-cran-utf8_1.2.4-1_arm64.deb ... 266s Unpacking r-cran-utf8 (1.2.4-1) ... 266s Selecting previously unselected package r-cran-pillar. 266s Preparing to unpack .../234-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 266s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 266s Selecting previously unselected package r-cran-pkgbuild. 266s Preparing to unpack .../235-r-cran-pkgbuild_1.4.3-1_all.deb ... 266s Unpacking r-cran-pkgbuild (1.4.3-1) ... 266s Selecting previously unselected package r-cran-pkgconfig. 266s Preparing to unpack .../236-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 266s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 266s Selecting previously unselected package r-cran-rprojroot. 266s Preparing to unpack .../237-r-cran-rprojroot_2.0.4-1_all.deb ... 266s Unpacking r-cran-rprojroot (2.0.4-1) ... 266s Selecting previously unselected package r-cran-pkgload. 267s Preparing to unpack .../238-r-cran-pkgload_1.3.4-1_all.deb ... 267s Unpacking r-cran-pkgload (1.3.4-1) ... 267s Selecting previously unselected package r-cran-praise. 267s Preparing to unpack .../239-r-cran-praise_1.0.0-4build1_all.deb ... 267s Unpacking r-cran-praise (1.0.0-4build1) ... 267s Selecting previously unselected package r-cran-tibble. 267s Preparing to unpack .../240-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 267s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 267s Selecting previously unselected package r-cran-rematch2. 267s Preparing to unpack .../241-r-cran-rematch2_2.1.2-2build1_all.deb ... 267s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 267s Selecting previously unselected package r-cran-waldo. 267s Preparing to unpack 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libpaper-utils (1.1.29) ... 270s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 270s Setting up libjs-modernizr (2.6.2+ds1-5) ... 270s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 270s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 270s Setting up libjs-es5-shim (4.6.7-2) ... 270s Setting up tex-common (6.18) ... 270s update-language: texlive-base not installed and configured, doing nothing! 270s Setting up libio-string-perl (1.08-4) ... 270s Setting up zip (3.0-13) ... 270s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 270s Setting up libblas3:arm64 (3.12.0-3) ... 270s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 270s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 270s Setting up libpkgconf3:arm64 (1.8.1-2) ... 270s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 270s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 270s Setting up t1utils 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g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 274s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 274s Setting up r-cran-commonmark (1.9.1-1) ... 274s Setting up r-cran-r6 (2.5.1-1) ... 274s Setting up r-cran-pkgkitten (0.2.3-1) ... 274s Setting up texlive-base (2023.20240207-1) ... 275s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 276s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 276s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 276s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 277s Setting up r-cran-magrittr (2.0.3-1) ... 277s Setting up r-cran-rappdirs (0.3.3-1) ... 277s Setting up r-cran-littler (0.3.19-1) ... 277s Setting up r-cran-bh (1.84.0-1) ... 277s Setting up r-cran-fs (1.6.3+dfsg-1) ... 277s Setting up r-cran-rcpp (1.0.12-1) ... 277s Setting up r-cran-codetools (0.2-19-1) ... 277s Setting up r-cran-brio (1.1.4-1) ... 277s Setting up r-cran-diffobj (0.3.5-1) ... 277s Setting up r-bioc-biocgenerics (0.48.1-2) ... 277s Setting up r-cran-rlang (1.1.3-1) ... 277s Setting up r-cran-matrixstats (1.2.0-1) ... 277s Setting up littler (0.3.19-1) ... 277s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 277s Setting up r-cran-xfun (0.41+dfsg-1) ... 277s Setting up r-cran-withr (2.5.0-1) ... 277s Setting up r-cran-processx (3.8.3-1) ... 277s Setting up r-cran-mime (0.12-1) ... 277s Setting up r-cran-praise (1.0.0-4build1) ... 277s Setting up r-cran-base64enc (0.1-3-3) ... 277s Setting up r-cran-abind (1.4-5-2) ... 277s Setting up r-cran-digest (0.6.34-1) ... 277s Setting up r-cran-yaml (2.3.8-1) ... 277s Setting up r-cran-lambda.r (1.2.4-2build1) ... 277s Setting up r-cran-evaluate (0.23-1) ... 277s Setting up r-cran-highr (0.10+dfsg-1) ... 277s Setting up r-cran-fansi (1.0.5-1) ... 277s Setting up r-cran-snow (1:0.4.4-2) ... 277s Setting up r-cran-glue (1.7.0-1) ... 277s Setting up r-cran-xtable (1:1.8-4-2) ... 277s Setting up r-cran-cli (3.6.2-1) ... 277s Setting up gfortran (4:13.2.0-7ubuntu1) ... 277s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 277s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 277s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 277s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 277s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 277s Setting up r-cran-rprojroot (2.0.4-1) ... 277s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 277s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 277s Setting up r-cran-fastmap (1.1.1-1) ... 277s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 277s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 277s Setting up r-cran-utf8 (1.2.4-1) ... 277s Setting up r-cran-stringi (1.8.3-1) ... 277s Setting up texlive-latex-base (2023.20240207-1) ... 277s Setting up r-cran-cpp11 (0.4.7-1) ... 277s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 277s Setting up r-cran-futile.logger (1.4.3-4build1) ... 277s Setting up r-cran-later (1.3.2+dfsg-1) ... 277s Setting up r-cran-matrix (1.6-5-1) ... 277s Setting up r-cran-tinytex (0.49-1) ... 277s Setting up r-cran-knitr (1.45+dfsg-1) ... 277s Setting up g++ (4:13.2.0-7ubuntu1) ... 277s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 277s Setting up r-cran-cachem (1.0.8-1) ... 277s Setting up build-essential (12.10ubuntu1) ... 277s Setting up r-bioc-iranges (2.36.0-1) ... 277s Setting up r-cran-vctrs (0.6.5-1) ... 277s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 277s Setting up r-cran-ellipsis (0.3.2-2) ... 277s Setting up r-base-dev (4.3.3-2build1) ... 277s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 277s Setting up r-cran-stringr (1.5.1-1) ... 277s Setting up r-bioc-biocparallel (1.36.0-1) ... 277s Setting up r-cran-callr (3.7.3-2) ... 277s Setting up r-cran-desc (1.4.3-1) ... 277s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 277s Setting up texlive-bibtex-extra (2023.20240207-1) ... 277s Setting up r-cran-memoise (2.0.1-1) ... 277s Setting up r-cran-promises (1.2.1+dfsg-1) ... 277s Setting up r-cran-htmltools (0.5.7-1) ... 277s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 277s Setting up r-bioc-xvector (0.42.0-1) ... 277s Setting up r-cran-pkgbuild (1.4.3-1) ... 277s Setting up r-cran-sass (0.4.8+dfsg-1) ... 277s Setting up r-cran-pkgload (1.3.4-1) ... 277s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 277s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 277s Setting up r-cran-rematch2 (2.1.2-2build1) ... 277s Setting up r-cran-fontawesome (0.5.2-1) ... 277s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 277s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 277s Setting up r-cran-waldo (0.5.2-1build1) ... 277s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 277s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 277s Setting up r-cran-testthat (3.2.1-1) ... 277s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 277s Setting up r-cran-bookdown (0.37+dfsg-1) ... 277s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 277s Setting up autopkgtest-satdep (0) ... 277s Processing triggers for man-db (2.12.0-3) ... 278s Processing triggers for install-info (7.1-3) ... 279s Processing triggers for libc-bin (2.39-0ubuntu2) ... 279s Processing triggers for tex-common (6.18) ... 280s Running updmap-sys. This may take some time... done. 280s Running mktexlsr /var/lib/texmf ... done. 281s Building format(s) --all. 320s This may take some time... done. 333s (Reading database ... 121576 files and directories currently installed.) 333s Removing autopkgtest-satdep (0) ... 334s autopkgtest [17:48:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 334s autopkgtest [17:48:33]: test pkg-r-autopkgtest: [----------------------- 335s Test: Try to load the R library S4Arrays 335s 335s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 335s Copyright (C) 2024 The R Foundation for Statistical Computing 335s Platform: aarch64-unknown-linux-gnu (64-bit) 335s 335s R is free software and comes with ABSOLUTELY NO WARRANTY. 335s You are welcome to redistribute it under certain conditions. 335s Type 'license()' or 'licence()' for distribution details. 335s 335s R is a collaborative project with many contributors. 335s Type 'contributors()' for more information and 335s 'citation()' on how to cite R or R packages in publications. 335s 335s Type 'demo()' for some demos, 'help()' for on-line help, or 335s 'help.start()' for an HTML browser interface to help. 335s Type 'q()' to quit R. 335s 335s > library('S4Arrays') 335s Loading required package: Matrix 336s Loading required package: abind 336s Loading required package: BiocGenerics 336s 336s Attaching package: ‘BiocGenerics’ 336s 336s The following objects are masked from ‘package:stats’: 336s 336s IQR, mad, sd, var, xtabs 336s 336s The following objects are masked from ‘package:base’: 336s 336s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 336s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 336s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 336s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 336s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 336s table, tapply, union, unique, unsplit, which.max, which.min 336s 336s Loading required package: S4Vectors 336s Loading required package: stats4 337s 337s Attaching package: ‘S4Vectors’ 337s 337s The following objects are masked from ‘package:Matrix’: 337s 337s expand, unname 337s 337s The following object is masked from ‘package:utils’: 337s 337s findMatches 337s 337s The following objects are masked from ‘package:base’: 337s 337s expand.grid, I, unname 337s 337s Loading required package: IRanges 338s 338s Attaching package: ‘S4Arrays’ 338s 338s The following object is masked from ‘package:abind’: 338s 338s abind 338s 338s The following object is masked from ‘package:base’: 338s 338s rowsum 338s 338s > 338s > 338s Other tests are currently unsupported! 338s They will be progressively added. 338s autopkgtest [17:48:37]: test pkg-r-autopkgtest: -----------------------] 339s pkg-r-autopkgtest PASS 339s autopkgtest [17:48:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 339s autopkgtest [17:48:38]: @@@@@@@@@@@@@@@@@@@@ summary 339s pkg-r-autopkgtest PASS 343s Creating nova instance adt-noble-arm64-r-bioc-s4arrays-20240316-174259-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...