0s autopkgtest [17:42:26]: starting date and time: 2024-03-16 17:42:26+0000 0s autopkgtest [17:42:26]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:42:26]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.c286dk7q/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-23.secgroup --name adt-noble-arm64-r-bioc-rtracklayer-20240316-174226-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 93s autopkgtest [17:43:59]: testbed dpkg architecture: arm64 93s autopkgtest [17:43:59]: testbed apt version: 2.7.12 93s autopkgtest [17:43:59]: @@@@@@@@@@@@@@@@@@@@ test bed setup 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 94s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 96s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 96s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 96s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 96s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 96s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 96s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 96s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 96s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 96s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 98s Fetched 9060 kB in 3s (2894 kB/s) 98s Reading package lists... 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Calculating upgrade... 102s The following packages will be REMOVED: 102s libglib2.0-0 libssl3 102s The following NEW packages will be installed: 102s libglib2.0-0t64 libssl3t64 xdg-user-dirs 102s The following packages have been kept back: 102s curl 102s The following packages will be upgraded: 102s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 102s ubuntu-minimal ubuntu-standard 102s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 102s Need to get 4613 kB of archives. 102s After this operation, 211 kB of additional disk space will be used. 102s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 102s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 103s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 103s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 103s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 103s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 103s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 103s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 103s Fetched 4613 kB in 1s (6795 kB/s) 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 104s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 104s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 104s udisks2 depends on libglib2.0-0 (>= 2.77.0). 104s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 104s python3-gi depends on libglib2.0-0 (>= 2.77.0). 104s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 104s netplan.io depends on libglib2.0-0 (>= 2.70.0). 104s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 104s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 104s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 104s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 104s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 104s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 104s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 104s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 104s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 104s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 104s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 104s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 104s fwupd depends on libglib2.0-0 (>= 2.79.0). 104s bolt depends on libglib2.0-0 (>= 2.56.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 104s Selecting previously unselected package libglib2.0-0t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 104s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 104s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 104s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 104s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 104s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 104s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 104s wget depends on libssl3 (>= 3.0.0). 104s u-boot-tools depends on libssl3 (>= 3.0.0). 104s tnftp depends on libssl3 (>= 3.0.0). 104s tcpdump depends on libssl3 (>= 3.0.0). 104s systemd-resolved depends on libssl3 (>= 3.0.0). 104s systemd depends on libssl3 (>= 3.0.0). 104s sudo depends on libssl3 (>= 3.0.0). 104s sbsigntool depends on libssl3 (>= 3.0.0). 104s rsync depends on libssl3 (>= 3.0.0). 104s python3-cryptography depends on libssl3 (>= 3.0.0). 104s openssh-server depends on libssl3 (>= 3.0.10). 104s openssh-client depends on libssl3 (>= 3.0.10). 104s mtd-utils depends on libssl3 (>= 3.0.0). 104s mokutil depends on libssl3 (>= 3.0.0). 104s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 104s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 104s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 104s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 104s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 104s libnvme1 depends on libssl3 (>= 3.0.0). 104s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 104s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 104s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 104s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 104s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 104s kmod depends on libssl3 (>= 3.0.0). 104s dhcpcd-base depends on libssl3 (>= 3.0.0). 104s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 104s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 104s Selecting previously unselected package libssl3t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 104s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 104s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 104s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 104s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 104s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 104s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 104s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 104s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 104s Unpacking ubuntu-minimal (1.536) over (1.535) ... 104s Selecting previously unselected package xdg-user-dirs. 104s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 104s Unpacking xdg-user-dirs (0.18-1) ... 104s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 104s Unpacking ubuntu-standard (1.536) over (1.535) ... 105s Setting up ubuntu-minimal (1.536) ... 105s Setting up xdg-user-dirs (0.18-1) ... 105s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 105s Setting up libtirpc-common (1.3.4+ds-1.1) ... 105s Setting up ubuntu-standard (1.536) ... 105s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 105s No schema files found: doing nothing. 105s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 105s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 105s Setting up openssl (3.0.13-0ubuntu1) ... 105s Setting up readline-common (8.2-3.1) ... 105s Processing triggers for man-db (2.12.0-3) ... 105s Processing triggers for install-info (7.1-3) ... 106s Processing triggers for libc-bin (2.39-0ubuntu2) ... 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 107s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 107s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 107s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 108s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 109s Reading package lists... 109s Reading package lists... 110s Building dependency tree... 110s Reading state information... 110s Calculating upgrade... 110s The following packages have been kept back: 110s curl 111s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s Reading package lists... 111s Building dependency tree... 111s Reading state information... 112s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 115s autopkgtest [17:44:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 115s autopkgtest [17:44:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer 117s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (dsc) [2398 B] 117s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (tar) [4019 kB] 117s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (diff) [27.2 kB] 118s gpgv: Signature made Thu Nov 30 17:25:54 2023 UTC 118s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 118s gpgv: issuer "tillea@rki.de" 118s gpgv: Can't check signature: No public key 118s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.62.0-1.dsc: no acceptable signature found 118s autopkgtest [17:44:24]: testing package r-bioc-rtracklayer version 1.62.0-1 119s autopkgtest [17:44:25]: build not needed 121s autopkgtest [17:44:27]: test pkg-r-autopkgtest: preparing testbed 123s Reading package lists... 123s Building dependency tree... 123s Reading state information... 124s Starting pkgProblemResolver with broken count: 0 124s Starting 2 pkgProblemResolver with broken count: 0 124s Done 125s The following additional packages will be installed: 125s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 125s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 125s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 125s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 125s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 125s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libboost-dev 125s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 125s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 125s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 125s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 125s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-jquery 125s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 125s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 125s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 125s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 125s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 125s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 125s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 125s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 125s linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf 125s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 125s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 125s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 125s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 125s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 125s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 125s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 125s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 125s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 125s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 125s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 125s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi 125s r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger 125s r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr 125s r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 125s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 125s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 125s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr 125s r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson 125s r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod 125s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 125s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 125s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 125s x11-common xdg-utils zip zlib1g-dev 125s Suggested packages: 125s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 125s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 125s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 125s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 125s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 125s libboost-contract1.83-dev libboost-coroutine1.83-dev 125s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 125s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 125s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 125s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 125s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 125s libboost-numpy1.83-dev libboost-program-options1.83-dev 125s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 125s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 125s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 125s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 125s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 125s glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 125s tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 125s texlive-base texlive-latex-base texlive-plain-generic 125s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 125s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db 125s r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-cran-testthat 125s r-cran-rmarkdown r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc 125s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 125s r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr 125s r-cran-biocmanager r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 125s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 125s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 125s r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse 125s r-cran-gplots r-cran-locfit r-cran-mass r-bioc-sparsematrixstats 125s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi 125s r-cran-rmysql r-cran-shiny r-cran-lubridate r-cran-getopt r-cran-formattable 125s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 125s r-cran-units r-cran-vdiffr r-cran-rcpp r-cran-rmpi r-cran-rlecuyer 125s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-evaluate 125s r-cran-here r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-plm 125s r-cran-zoo 125s Recommended packages: 125s bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools 125s r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr 125s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 125s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 125s r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 125s r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-scales r-cran-rcpp 125s r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils 125s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-testit 125s r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 125s r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown 125s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-fs r-cran-usethis 125s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table 125s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot 125s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 125s x11-xserver-utils 125s The following packages will be REMOVED: 125s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 125s The following NEW packages will be installed: 125s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 125s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 125s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 125s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 125s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 125s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 125s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 125s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 125s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 125s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 125s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 125s libjs-jquery liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 125s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 125s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 125s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 125s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 125s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 125s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 125s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 125s linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf 125s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 125s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 125s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 125s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 125s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 125s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 125s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 125s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 125s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 125s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 125s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 125s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi 125s r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger 125s r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr 125s r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 125s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 125s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 125s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr 125s r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson 125s r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod 125s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 125s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 125s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 125s x11-common xdg-utils zip zlib1g-dev 125s The following packages will be upgraded: 125s curl 125s 1 upgraded, 215 newly installed, 5 to remove and 0 not upgraded. 125s Need to get 324 MB/324 MB of archives. 125s After this operation, 1143 MB of additional disk space will be used. 125s Get:1 /tmp/autopkgtest.35ODrE/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 125s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 126s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 126s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 126s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 126s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 126s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 126s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 126s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 126s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 126s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 126s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 126s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 126s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 126s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 126s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 126s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 126s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 126s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 126s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 126s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 126s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 126s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 126s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 126s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 126s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 126s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 126s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 126s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 126s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 126s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 127s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 127s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 127s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 127s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 127s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 127s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 127s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 127s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 127s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 127s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 127s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 127s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 127s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 127s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 127s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 127s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 127s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 127s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 128s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 128s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 128s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 128s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 128s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 128s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 128s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 128s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 128s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 128s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 128s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 128s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 128s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 128s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 128s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 128s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 128s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 128s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 128s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 128s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 128s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 128s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 128s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 128s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 128s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 128s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 128s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 128s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 128s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 128s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 128s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 129s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 129s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 129s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 129s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 129s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 129s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 129s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 129s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 129s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 129s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 129s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 129s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 129s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 129s Get:94 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 129s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 129s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 129s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 129s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 129s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 129s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 129s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 129s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 129s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 129s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 129s Get:105 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 129s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 129s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 129s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 129s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 129s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 129s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 129s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 129s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 130s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 130s Get:115 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 130s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 130s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 130s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 130s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 130s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 130s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 130s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 130s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 131s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 131s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 131s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 131s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 131s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 131s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 131s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 131s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 131s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 131s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 131s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 131s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 131s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 131s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 131s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 131s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 131s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 131s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 131s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 131s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 131s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 131s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 131s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 131s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 131s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 131s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 131s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 131s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 132s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 132s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 132s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 132s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 132s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 132s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 132s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 132s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 132s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 132s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 132s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 132s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 132s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 132s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 132s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 132s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 132s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 132s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 133s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 133s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 133s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 133s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 133s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 133s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 133s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 133s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 133s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 133s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 133s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 133s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 133s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 133s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 133s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 133s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 133s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 133s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 133s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 133s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 133s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 133s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 133s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 133s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 133s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 133s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 133s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 133s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 133s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 133s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 133s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 133s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 133s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 133s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 134s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 134s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 134s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 134s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 134s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 134s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 134s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 135s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 135s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 135s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 135s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 135s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 136s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 138s Preconfiguring packages ... 138s Fetched 324 MB in 11s (28.9 MB/s) 138s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 138s wget depends on libpsl5 (>= 0.16.0). 138s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 138s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 138s Removing libpsl5:arm64 (0.21.2-1build1) ... 138s Selecting previously unselected package libpsl5t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 138s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 138s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 138s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 138s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 138s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 138s Selecting previously unselected package libcurl4t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 138s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 138s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 138s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 138s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 138s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 138s Removing libpng16-16:arm64 (1.6.43-1) ... 138s Selecting previously unselected package libpng16-16t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 138s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 138s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 138s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 138s parted depends on libreadline8 (>= 6.0). 138s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 138s gpgsm depends on libreadline8 (>= 6.0). 138s gpgconf depends on libreadline8 (>= 6.0). 138s gpg depends on libreadline8 (>= 6.0). 138s gawk depends on libreadline8 (>= 6.0). 138s fdisk depends on libreadline8 (>= 6.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 138s Removing libreadline8:arm64 (8.2-3) ... 138s Selecting previously unselected package libreadline8t64:arm64. 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 138s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 138s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 138s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 138s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 138s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 138s lsof depends on libtirpc3 (>= 1.0.2). 138s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 138s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 138s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 138s iproute2 depends on libtirpc3 (>= 1.0.2). 138s 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 139s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 139s Selecting previously unselected package libtirpc3t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 139s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 139s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 139s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libc-dev-bin. 139s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 139s Selecting previously unselected package linux-libc-dev:arm64. 139s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 139s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 139s Selecting previously unselected package libcrypt-dev:arm64. 139s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 139s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 139s Selecting previously unselected package libtirpc-dev:arm64. 139s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 139s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 139s Selecting previously unselected package libnsl-dev:arm64. 139s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 139s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 139s Selecting previously unselected package rpcsvc-proto. 139s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 139s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 139s Selecting previously unselected package libc6-dev:arm64. 139s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 139s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 139s Selecting previously unselected package libisl23:arm64. 139s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 139s Unpacking libisl23:arm64 (0.26-3) ... 139s Selecting previously unselected package libmpc3:arm64. 140s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 140s Unpacking libmpc3:arm64 (1.3.1-1) ... 140s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 140s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package cpp-13. 141s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package cpp-aarch64-linux-gnu. 141s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package cpp. 141s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking cpp (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package libcc1-0:arm64. 141s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libgomp1:arm64. 141s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libitm1:arm64. 141s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libatomic1:arm64. 141s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libasan8:arm64. 141s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package liblsan0:arm64. 141s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libtsan2:arm64. 141s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libubsan1:arm64. 141s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libhwasan0:arm64. 142s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 142s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 142s Selecting previously unselected package libgcc-13-dev:arm64. 142s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 142s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gcc-13. 142s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 142s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 142s Selecting previously unselected package gcc-aarch64-linux-gnu. 142s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package gcc. 142s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 142s Unpacking gcc (4:13.2.0-7ubuntu1) ... 142s Selecting previously unselected package libstdc++-13-dev:arm64. 143s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-13-aarch64-linux-gnu. 143s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-13. 143s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking g++-13 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package g++-aarch64-linux-gnu. 143s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package g++. 143s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 143s Unpacking g++ (4:13.2.0-7ubuntu1) ... 143s Selecting previously unselected package build-essential. 143s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 143s Unpacking build-essential (12.10ubuntu1) ... 143s Selecting previously unselected package dctrl-tools. 143s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 143s Unpacking dctrl-tools (2.24-3build2) ... 143s Selecting previously unselected package fonts-dejavu-mono. 143s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 143s Unpacking fonts-dejavu-mono (2.37-8) ... 143s Selecting previously unselected package fonts-dejavu-core. 143s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 143s Unpacking fonts-dejavu-core (2.37-8) ... 143s Selecting previously unselected package fontconfig-config. 143s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 143s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 143s Selecting previously unselected package libfontconfig1:arm64. 143s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 143s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 143s Selecting previously unselected package fontconfig. 144s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 144s Unpacking fontconfig (2.15.0-1ubuntu1) ... 144s Selecting previously unselected package libgfortran5:arm64. 144s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 144s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 144s Selecting previously unselected package libgfortran-13-dev:arm64. 144s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 144s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-13. 144s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-aarch64-linux-gnu. 144s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package gfortran. 144s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package icu-devtools. 144s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 144s Unpacking icu-devtools (74.2-1ubuntu1) ... 144s Selecting previously unselected package libblas3:arm64. 144s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 144s Unpacking libblas3:arm64 (3.12.0-3) ... 144s Selecting previously unselected package libblas-dev:arm64. 144s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 144s Unpacking libblas-dev:arm64 (3.12.0-3) ... 144s Selecting previously unselected package libboost1.83-dev:arm64. 144s Preparing to unpack .../049-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 144s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 146s Selecting previously unselected package libboost-dev:arm64. 146s Preparing to unpack .../050-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 146s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 146s Selecting previously unselected package libbz2-dev:arm64. 146s Preparing to unpack .../051-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 146s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 146s Selecting previously unselected package libpixman-1-0:arm64. 146s Preparing to unpack .../052-libpixman-1-0_0.42.2-1_arm64.deb ... 146s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 146s Selecting previously unselected package libxcb-render0:arm64. 146s Preparing to unpack .../053-libxcb-render0_1.15-1_arm64.deb ... 146s Unpacking libxcb-render0:arm64 (1.15-1) ... 146s Selecting previously unselected package libxcb-shm0:arm64. 146s Preparing to unpack .../054-libxcb-shm0_1.15-1_arm64.deb ... 146s Unpacking libxcb-shm0:arm64 (1.15-1) ... 146s Selecting previously unselected package libxrender1:arm64. 146s Preparing to unpack .../055-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 146s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 147s Selecting previously unselected package libcairo2:arm64. 147s Preparing to unpack .../056-libcairo2_1.18.0-1_arm64.deb ... 147s Unpacking libcairo2:arm64 (1.18.0-1) ... 147s Selecting previously unselected package libdatrie1:arm64. 147s Preparing to unpack .../057-libdatrie1_0.2.13-3_arm64.deb ... 147s Unpacking libdatrie1:arm64 (0.2.13-3) ... 147s Selecting previously unselected package libdeflate0:arm64. 147s Preparing to unpack .../058-libdeflate0_1.19-1_arm64.deb ... 147s Unpacking libdeflate0:arm64 (1.19-1) ... 147s Selecting previously unselected package libgraphite2-3:arm64. 147s Preparing to unpack .../059-libgraphite2-3_1.3.14-2_arm64.deb ... 147s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 147s Selecting previously unselected package libharfbuzz0b:arm64. 147s Preparing to unpack .../060-libharfbuzz0b_8.3.0-2_arm64.deb ... 147s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 147s Selecting previously unselected package x11-common. 147s Preparing to unpack .../061-x11-common_1%3a7.7+23ubuntu2_all.deb ... 147s Unpacking x11-common (1:7.7+23ubuntu2) ... 147s Selecting previously unselected package libice6:arm64. 147s Preparing to unpack .../062-libice6_2%3a1.0.10-1build2_arm64.deb ... 147s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 147s Selecting previously unselected package libicu-dev:arm64. 147s Preparing to unpack .../063-libicu-dev_74.2-1ubuntu1_arm64.deb ... 147s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 147s Selecting previously unselected package libjpeg-turbo8:arm64. 147s Preparing to unpack .../064-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 147s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 147s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 147s Preparing to unpack .../065-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 147s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 147s Selecting previously unselected package libjpeg8:arm64. 147s Preparing to unpack .../066-libjpeg8_8c-2ubuntu11_arm64.deb ... 147s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 147s Selecting previously unselected package libjpeg8-dev:arm64. 147s Preparing to unpack .../067-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 147s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 147s Selecting previously unselected package libjpeg-dev:arm64. 147s Preparing to unpack .../068-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 147s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 147s Selecting previously unselected package libjs-jquery. 147s Preparing to unpack .../069-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 147s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 147s Selecting previously unselected package liblapack3:arm64. 148s Preparing to unpack .../070-liblapack3_3.12.0-3_arm64.deb ... 148s Unpacking liblapack3:arm64 (3.12.0-3) ... 148s Selecting previously unselected package liblapack-dev:arm64. 148s Preparing to unpack .../071-liblapack-dev_3.12.0-3_arm64.deb ... 148s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 148s Selecting previously unselected package liblerc4:arm64. 148s Preparing to unpack .../072-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 148s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 148s Selecting previously unselected package libncurses-dev:arm64. 148s Preparing to unpack .../073-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 148s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 148s Selecting previously unselected package libthai-data. 148s Preparing to unpack .../074-libthai-data_0.1.29-2_all.deb ... 148s Unpacking libthai-data (0.1.29-2) ... 148s Selecting previously unselected package libthai0:arm64. 148s Preparing to unpack .../075-libthai0_0.1.29-2_arm64.deb ... 148s Unpacking libthai0:arm64 (0.1.29-2) ... 148s Selecting previously unselected package libpango-1.0-0:arm64. 148s Preparing to unpack .../076-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangoft2-1.0-0:arm64. 148s Preparing to unpack .../077-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpangocairo-1.0-0:arm64. 148s Preparing to unpack .../078-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpaper1:arm64. 148s Preparing to unpack .../079-libpaper1_1.1.29_arm64.deb ... 148s Unpacking libpaper1:arm64 (1.1.29) ... 148s Selecting previously unselected package libpaper-utils. 148s Preparing to unpack .../080-libpaper-utils_1.1.29_arm64.deb ... 148s Unpacking libpaper-utils (1.1.29) ... 148s Selecting previously unselected package libpcre2-16-0:arm64. 148s Preparing to unpack .../081-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-32-0:arm64. 148s Preparing to unpack .../082-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-posix3:arm64. 148s Preparing to unpack .../083-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-dev:arm64. 149s Preparing to unpack .../084-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 149s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 149s Selecting previously unselected package libpkgconf3:arm64. 149s Preparing to unpack .../085-libpkgconf3_1.8.1-2_arm64.deb ... 149s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 149s Selecting previously unselected package zlib1g-dev:arm64. 149s Preparing to unpack .../086-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 149s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 149s Selecting previously unselected package libpng-dev:arm64. 149s Preparing to unpack .../087-libpng-dev_1.6.43-3_arm64.deb ... 149s Unpacking libpng-dev:arm64 (1.6.43-3) ... 149s Selecting previously unselected package libreadline-dev:arm64. 149s Preparing to unpack .../088-libreadline-dev_8.2-3.1_arm64.deb ... 149s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 149s Selecting previously unselected package libsharpyuv0:arm64. 149s Preparing to unpack .../089-libsharpyuv0_1.3.2-0.4_arm64.deb ... 149s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 149s Selecting previously unselected package libsm6:arm64. 149s Preparing to unpack .../090-libsm6_2%3a1.2.3-1build2_arm64.deb ... 149s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 149s Selecting previously unselected package libtcl8.6:arm64. 149s Preparing to unpack .../091-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 149s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 149s Selecting previously unselected package libjbig0:arm64. 149s Preparing to unpack .../092-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 149s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 150s Selecting previously unselected package libwebp7:arm64. 150s Preparing to unpack .../093-libwebp7_1.3.2-0.4_arm64.deb ... 150s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 150s Selecting previously unselected package libtiff6:arm64. 150s Preparing to unpack .../094-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 150s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 150s Selecting previously unselected package libxft2:arm64. 150s Preparing to unpack .../095-libxft2_2.3.6-1_arm64.deb ... 150s Unpacking libxft2:arm64 (2.3.6-1) ... 150s Selecting previously unselected package libxss1:arm64. 150s Preparing to unpack .../096-libxss1_1%3a1.2.3-1build2_arm64.deb ... 150s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 150s Selecting previously unselected package libtk8.6:arm64. 150s Preparing to unpack .../097-libtk8.6_8.6.13-2_arm64.deb ... 150s Unpacking libtk8.6:arm64 (8.6.13-2) ... 150s Selecting previously unselected package libxt6t64:arm64. 150s Preparing to unpack .../098-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 150s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 150s Selecting previously unselected package node-html5shiv. 150s Preparing to unpack .../099-node-html5shiv_3.7.3+dfsg-5_all.deb ... 150s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 150s Selecting previously unselected package pkgconf-bin. 150s Preparing to unpack .../100-pkgconf-bin_1.8.1-2_arm64.deb ... 150s Unpacking pkgconf-bin (1.8.1-2) ... 150s Selecting previously unselected package pkgconf:arm64. 150s Preparing to unpack .../101-pkgconf_1.8.1-2_arm64.deb ... 150s Unpacking pkgconf:arm64 (1.8.1-2) ... 150s Selecting previously unselected package pkg-config:arm64. 150s Preparing to unpack .../102-pkg-config_1.8.1-2_arm64.deb ... 150s Unpacking pkg-config:arm64 (1.8.1-2) ... 150s Selecting previously unselected package zip. 150s Preparing to unpack .../103-zip_3.0-13_arm64.deb ... 150s Unpacking zip (3.0-13) ... 150s Selecting previously unselected package unzip. 150s Preparing to unpack .../104-unzip_6.0-28ubuntu3_arm64.deb ... 150s Unpacking unzip (6.0-28ubuntu3) ... 150s Selecting previously unselected package xdg-utils. 151s Preparing to unpack .../105-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 151s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 151s Selecting previously unselected package r-base-core. 151s Preparing to unpack .../106-r-base-core_4.3.3-2build1_arm64.deb ... 151s Unpacking r-base-core (4.3.3-2build1) ... 151s Selecting previously unselected package liblzma-dev:arm64. 151s Preparing to unpack .../107-liblzma-dev_5.4.5-0.3_arm64.deb ... 151s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 151s Selecting previously unselected package r-base-dev. 151s Preparing to unpack .../108-r-base-dev_4.3.3-2build1_all.deb ... 151s Unpacking r-base-dev (4.3.3-2build1) ... 151s Selecting previously unselected package pkg-r-autopkgtest. 152s Preparing to unpack .../109-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 152s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 152s Selecting previously unselected package r-bioc-biocgenerics. 152s Preparing to unpack .../110-r-bioc-biocgenerics_0.48.1-2_all.deb ... 152s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 152s Selecting previously unselected package r-bioc-biobase. 152s Preparing to unpack .../111-r-bioc-biobase_2.62.0-1_arm64.deb ... 152s Unpacking r-bioc-biobase (2.62.0-1) ... 152s Selecting previously unselected package r-bioc-s4vectors. 152s Preparing to unpack .../112-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 152s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 152s Selecting previously unselected package r-bioc-iranges. 152s Preparing to unpack .../113-r-bioc-iranges_2.36.0-1_arm64.deb ... 152s Unpacking r-bioc-iranges (2.36.0-1) ... 152s Selecting previously unselected package r-cran-dbi. 152s Preparing to unpack .../114-r-cran-dbi_1.2.2-1_all.deb ... 152s Unpacking r-cran-dbi (1.2.2-1) ... 152s Selecting previously unselected package r-cran-bit. 152s Preparing to unpack .../115-r-cran-bit_4.0.5-1_arm64.deb ... 152s Unpacking r-cran-bit (4.0.5-1) ... 152s Selecting previously unselected package r-cran-bit64. 152s Preparing to unpack .../116-r-cran-bit64_4.0.5-1_arm64.deb ... 152s Unpacking r-cran-bit64 (4.0.5-1) ... 152s Selecting previously unselected package r-cran-rlang. 152s Preparing to unpack .../117-r-cran-rlang_1.1.3-1_arm64.deb ... 152s Unpacking r-cran-rlang (1.1.3-1) ... 152s Selecting previously unselected package r-cran-cli. 152s Preparing to unpack .../118-r-cran-cli_3.6.2-1_arm64.deb ... 152s Unpacking r-cran-cli (3.6.2-1) ... 152s Selecting previously unselected package r-cran-glue. 152s Preparing to unpack .../119-r-cran-glue_1.7.0-1_arm64.deb ... 152s Unpacking r-cran-glue (1.7.0-1) ... 152s Selecting previously unselected package r-cran-lifecycle. 152s Preparing to unpack .../120-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 152s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 153s Selecting previously unselected package r-cran-vctrs. 153s Preparing to unpack .../121-r-cran-vctrs_0.6.5-1_arm64.deb ... 153s Unpacking r-cran-vctrs (0.6.5-1) ... 153s Selecting previously unselected package r-cran-blob. 153s Preparing to unpack .../122-r-cran-blob_1.2.4-1_all.deb ... 153s Unpacking r-cran-blob (1.2.4-1) ... 153s Selecting previously unselected package r-cran-fastmap. 153s Preparing to unpack .../123-r-cran-fastmap_1.1.1-1_arm64.deb ... 153s Unpacking r-cran-fastmap (1.1.1-1) ... 153s Selecting previously unselected package r-cran-cachem. 153s Preparing to unpack .../124-r-cran-cachem_1.0.8-1_arm64.deb ... 153s Unpacking r-cran-cachem (1.0.8-1) ... 153s Selecting previously unselected package r-cran-memoise. 153s Preparing to unpack .../125-r-cran-memoise_2.0.1-1_all.deb ... 153s Unpacking r-cran-memoise (2.0.1-1) ... 153s Selecting previously unselected package r-cran-pkgconfig. 153s Preparing to unpack .../126-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 153s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 153s Selecting previously unselected package r-cran-plogr. 153s Preparing to unpack .../127-r-cran-plogr_0.2.0-3build1_all.deb ... 153s Unpacking r-cran-plogr (0.2.0-3build1) ... 153s Selecting previously unselected package r-cran-cpp11. 153s Preparing to unpack .../128-r-cran-cpp11_0.4.7-1_all.deb ... 153s Unpacking r-cran-cpp11 (0.4.7-1) ... 153s Selecting previously unselected package r-cran-rsqlite. 153s Preparing to unpack .../129-r-cran-rsqlite_2.3.4-1_arm64.deb ... 153s Unpacking r-cran-rsqlite (2.3.4-1) ... 153s Selecting previously unselected package r-cran-curl. 153s Preparing to unpack .../130-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 153s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 153s Selecting previously unselected package r-cran-jsonlite. 153s Preparing to unpack .../131-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 153s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 153s Selecting previously unselected package r-cran-mime. 154s Preparing to unpack .../132-r-cran-mime_0.12-1_arm64.deb ... 154s Unpacking r-cran-mime (0.12-1) ... 154s Selecting previously unselected package r-cran-sys. 154s Preparing to unpack .../133-r-cran-sys_3.4.2-1_arm64.deb ... 154s Unpacking r-cran-sys (3.4.2-1) ... 154s Selecting previously unselected package r-cran-askpass. 154s Preparing to unpack .../134-r-cran-askpass_1.2.0-1_arm64.deb ... 154s Unpacking r-cran-askpass (1.2.0-1) ... 154s Selecting previously unselected package r-cran-openssl. 154s Preparing to unpack .../135-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 154s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 154s Selecting previously unselected package r-cran-r6. 154s Preparing to unpack .../136-r-cran-r6_2.5.1-1_all.deb ... 154s Unpacking r-cran-r6 (2.5.1-1) ... 154s Selecting previously unselected package r-cran-httr. 154s Preparing to unpack .../137-r-cran-httr_1.4.7+dfsg-1_all.deb ... 154s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 154s Selecting previously unselected package r-cran-png. 154s Preparing to unpack .../138-r-cran-png_0.1-8-1_arm64.deb ... 154s Unpacking r-cran-png (0.1-8-1) ... 154s Selecting previously unselected package r-bioc-zlibbioc. 154s Preparing to unpack .../139-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 154s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 154s Selecting previously unselected package r-bioc-xvector. 154s Preparing to unpack .../140-r-bioc-xvector_0.42.0-1_arm64.deb ... 154s Unpacking r-bioc-xvector (0.42.0-1) ... 154s Selecting previously unselected package r-cran-bitops. 154s Preparing to unpack .../141-r-cran-bitops_1.0-7-1_arm64.deb ... 154s Unpacking r-cran-bitops (1.0-7-1) ... 154s Selecting previously unselected package r-cran-rcurl. 154s Preparing to unpack .../142-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 154s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 154s Selecting previously unselected package r-bioc-genomeinfodbdata. 154s Preparing to unpack .../143-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 154s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 154s Selecting previously unselected package r-bioc-genomeinfodb. 154s Preparing to unpack .../144-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 154s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 154s Selecting previously unselected package r-cran-crayon. 154s Preparing to unpack .../145-r-cran-crayon_1.5.2-1_all.deb ... 154s Unpacking r-cran-crayon (1.5.2-1) ... 154s Selecting previously unselected package r-bioc-biostrings. 154s Preparing to unpack .../146-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 154s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 154s Selecting previously unselected package r-bioc-keggrest. 154s Preparing to unpack .../147-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 154s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 154s Selecting previously unselected package r-bioc-annotationdbi. 154s Preparing to unpack .../148-r-bioc-annotationdbi_1.64.1-1_all.deb ... 154s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 155s Selecting previously unselected package r-cran-xml. 155s Preparing to unpack .../149-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 155s Unpacking r-cran-xml (3.99-0.16.1-1) ... 155s Selecting previously unselected package r-cran-xtable. 155s Preparing to unpack .../150-r-cran-xtable_1%3a1.8-4-2_all.deb ... 155s Unpacking r-cran-xtable (1:1.8-4-2) ... 155s Selecting previously unselected package r-bioc-annotate. 155s Preparing to unpack .../151-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 155s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-generics. 155s Preparing to unpack .../152-r-cran-generics_0.1.3-1_all.deb ... 155s Unpacking r-cran-generics (0.1.3-1) ... 155s Selecting previously unselected package r-cran-magrittr. 155s Preparing to unpack .../153-r-cran-magrittr_2.0.3-1_arm64.deb ... 155s Unpacking r-cran-magrittr (2.0.3-1) ... 155s Selecting previously unselected package r-cran-fansi. 155s Preparing to unpack .../154-r-cran-fansi_1.0.5-1_arm64.deb ... 155s Unpacking r-cran-fansi (1.0.5-1) ... 155s Selecting previously unselected package r-cran-utf8. 155s Preparing to unpack .../155-r-cran-utf8_1.2.4-1_arm64.deb ... 155s Unpacking r-cran-utf8 (1.2.4-1) ... 155s Selecting previously unselected package r-cran-pillar. 155s Preparing to unpack .../156-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 155s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 155s Selecting previously unselected package r-cran-tibble. 155s Preparing to unpack .../157-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 155s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 156s Selecting previously unselected package r-cran-withr. 156s Preparing to unpack .../158-r-cran-withr_2.5.0-1_all.deb ... 156s Unpacking r-cran-withr (2.5.0-1) ... 156s Selecting previously unselected package r-cran-tidyselect. 156s Preparing to unpack .../159-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 156s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 156s Selecting previously unselected package r-cran-dplyr. 156s Preparing to unpack .../160-r-cran-dplyr_1.1.4-1_arm64.deb ... 156s Unpacking r-cran-dplyr (1.1.4-1) ... 156s Selecting previously unselected package r-cran-purrr. 156s Preparing to unpack .../161-r-cran-purrr_1.0.2-1_arm64.deb ... 156s Unpacking r-cran-purrr (1.0.2-1) ... 156s Selecting previously unselected package r-cran-stringi. 156s Preparing to unpack .../162-r-cran-stringi_1.8.3-1_arm64.deb ... 156s Unpacking r-cran-stringi (1.8.3-1) ... 156s Selecting previously unselected package r-cran-stringr. 156s Preparing to unpack .../163-r-cran-stringr_1.5.1-1_all.deb ... 156s Unpacking r-cran-stringr (1.5.1-1) ... 156s Selecting previously unselected package r-cran-tidyr. 156s Preparing to unpack .../164-r-cran-tidyr_1.3.1-1_arm64.deb ... 156s Unpacking r-cran-tidyr (1.3.1-1) ... 156s Selecting previously unselected package r-cran-dbplyr. 156s Preparing to unpack .../165-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 156s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 156s Selecting previously unselected package r-cran-filelock. 156s Preparing to unpack .../166-r-cran-filelock_1.0.3-1_arm64.deb ... 156s Unpacking r-cran-filelock (1.0.3-1) ... 156s Selecting previously unselected package r-bioc-biocfilecache. 156s Preparing to unpack .../167-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 156s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 156s Selecting previously unselected package r-bioc-biocio. 156s Preparing to unpack .../168-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 156s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 156s Selecting previously unselected package r-cran-formatr. 156s Preparing to unpack .../169-r-cran-formatr_1.14-1_all.deb ... 156s Unpacking r-cran-formatr (1.14-1) ... 157s Selecting previously unselected package r-cran-lambda.r. 157s Preparing to unpack .../170-r-cran-lambda.r_1.2.4-2build1_all.deb ... 157s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 157s Selecting previously unselected package r-cran-futile.options. 157s Preparing to unpack .../171-r-cran-futile.options_1.0.1-3build1_all.deb ... 157s Unpacking r-cran-futile.options (1.0.1-3build1) ... 157s Selecting previously unselected package r-cran-futile.logger. 157s Preparing to unpack .../172-r-cran-futile.logger_1.4.3-4build1_all.deb ... 157s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 157s Selecting previously unselected package r-cran-snow. 157s Preparing to unpack .../173-r-cran-snow_1%3a0.4.4-2_all.deb ... 157s Unpacking r-cran-snow (1:0.4.4-2) ... 157s Selecting previously unselected package r-cran-codetools. 157s Preparing to unpack .../174-r-cran-codetools_0.2-19-1_all.deb ... 157s Unpacking r-cran-codetools (0.2-19-1) ... 157s Selecting previously unselected package r-cran-bh. 157s Preparing to unpack .../175-r-cran-bh_1.84.0-1_all.deb ... 157s Unpacking r-cran-bh (1.84.0-1) ... 157s Selecting previously unselected package r-bioc-biocparallel. 157s Preparing to unpack .../176-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 157s Unpacking r-bioc-biocparallel (1.36.0-1) ... 157s Selecting previously unselected package r-cran-hms. 157s Preparing to unpack .../177-r-cran-hms_1.1.3-1_all.deb ... 157s Unpacking r-cran-hms (1.1.3-1) ... 157s Selecting previously unselected package r-cran-prettyunits. 157s Preparing to unpack .../178-r-cran-prettyunits_1.2.0-1_all.deb ... 157s Unpacking r-cran-prettyunits (1.2.0-1) ... 157s Selecting previously unselected package r-cran-progress. 157s Preparing to unpack .../179-r-cran-progress_1.2.3-1_all.deb ... 157s Unpacking r-cran-progress (1.2.3-1) ... 157s Selecting previously unselected package r-cran-digest. 157s Preparing to unpack .../180-r-cran-digest_0.6.34-1_arm64.deb ... 157s Unpacking r-cran-digest (0.6.34-1) ... 157s Selecting previously unselected package r-cran-rappdirs. 157s Preparing to unpack .../181-r-cran-rappdirs_0.3.3-1_arm64.deb ... 157s Unpacking r-cran-rappdirs (0.3.3-1) ... 157s Selecting previously unselected package r-cran-xml2. 157s Preparing to unpack .../182-r-cran-xml2_1.3.6-1_arm64.deb ... 157s Unpacking r-cran-xml2 (1.3.6-1) ... 157s Selecting previously unselected package r-bioc-biomart. 157s Preparing to unpack .../183-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 157s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 157s Selecting previously unselected package r-bioc-genomicranges. 157s Preparing to unpack .../184-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 157s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 158s Selecting previously unselected package r-bioc-rhtslib. 158s Preparing to unpack .../185-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 158s Selecting previously unselected package r-bioc-rsamtools. 158s Preparing to unpack .../186-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 158s Selecting previously unselected package r-cran-matrixstats. 158s Preparing to unpack .../187-r-cran-matrixstats_1.2.0-1_arm64.deb ... 158s Unpacking r-cran-matrixstats (1.2.0-1) ... 158s Selecting previously unselected package r-bioc-matrixgenerics. 158s Preparing to unpack .../188-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 158s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 158s Selecting previously unselected package r-cran-lattice. 158s Preparing to unpack .../189-r-cran-lattice_0.22-5-1_arm64.deb ... 158s Unpacking r-cran-lattice (0.22-5-1) ... 158s Selecting previously unselected package r-cran-matrix. 158s Preparing to unpack .../190-r-cran-matrix_1.6-5-1_arm64.deb ... 158s Unpacking r-cran-matrix (1.6-5-1) ... 158s Selecting previously unselected package r-cran-abind. 158s Preparing to unpack .../191-r-cran-abind_1.4-5-2_all.deb ... 158s Unpacking r-cran-abind (1.4-5-2) ... 158s Selecting previously unselected package r-bioc-s4arrays. 158s Preparing to unpack .../192-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-sparsearray. 158s Preparing to unpack .../193-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 158s Selecting previously unselected package r-bioc-delayedarray. 158s Preparing to unpack .../194-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 158s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-summarizedexperiment. 158s Preparing to unpack .../195-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 158s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 158s Selecting previously unselected package r-bioc-genomicalignments. 158s Preparing to unpack .../196-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 158s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 159s Selecting previously unselected package r-cran-littler. 159s Preparing to unpack .../197-r-cran-littler_0.3.19-1_arm64.deb ... 159s Unpacking r-cran-littler (0.3.19-1) ... 159s Selecting previously unselected package r-cran-rjson. 159s Preparing to unpack .../198-r-cran-rjson_0.2.21-1_arm64.deb ... 159s Unpacking r-cran-rjson (0.2.21-1) ... 159s Selecting previously unselected package r-cran-yaml. 159s Preparing to unpack .../199-r-cran-yaml_2.3.8-1_arm64.deb ... 159s Unpacking r-cran-yaml (2.3.8-1) ... 159s Selecting previously unselected package r-cran-restfulr. 159s Preparing to unpack .../200-r-cran-restfulr_0.0.15-1_arm64.deb ... 159s Unpacking r-cran-restfulr (0.0.15-1) ... 159s Selecting previously unselected package r-bioc-rtracklayer. 159s Preparing to unpack .../201-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 159s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 159s Selecting previously unselected package r-bioc-bsgenome. 159s Preparing to unpack .../202-r-bioc-bsgenome_1.70.2-1_all.deb ... 159s Unpacking r-bioc-bsgenome (1.70.2-1) ... 159s Selecting previously unselected package r-cran-survival. 159s Preparing to unpack .../203-r-cran-survival_3.5-8-1_arm64.deb ... 159s Unpacking r-cran-survival (3.5-8-1) ... 159s Selecting previously unselected package r-bioc-genefilter. 159s Preparing to unpack .../204-r-bioc-genefilter_1.84.0-1_arm64.deb ... 159s Unpacking r-bioc-genefilter (1.84.0-1) ... 159s Selecting previously unselected package r-bioc-genomicfeatures. 159s Preparing to unpack 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exist 166s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 166s Setting up r-cran-bitops (1.0-7-1) ... 166s Setting up r-cran-bit64 (4.0.5-1) ... 166s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 166s Setting up r-cran-askpass (1.2.0-1) ... 166s Setting up r-cran-fastmap (1.1.1-1) ... 166s Setting up r-cran-png (0.1-8-1) ... 166s Setting up r-bioc-biobase (2.62.0-1) ... 166s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 166s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 166s Setting up r-cran-utf8 (1.2.4-1) ... 166s Setting up r-cran-stringi (1.8.3-1) ... 166s Setting up r-cran-cpp11 (0.4.7-1) ... 166s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 166s Setting up r-cran-runit (0.4.32-3) ... 166s Setting up r-cran-futile.logger (1.4.3-4build1) ... 166s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 166s Setting up r-cran-matrix (1.6-5-1) ... 166s Setting up g++ (4:13.2.0-7ubuntu1) ... 166s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 166s Setting up r-cran-cachem (1.0.8-1) ... 166s Setting up build-essential (12.10ubuntu1) ... 166s Setting up r-bioc-iranges (2.36.0-1) ... 166s Setting up r-cran-rjson (0.2.21-1) ... 166s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 166s Setting up r-cran-restfulr (0.0.15-1) ... 166s Setting up r-cran-vctrs (0.6.5-1) ... 166s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 166s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 166s Setting up r-base-dev (4.3.3-2build1) ... 166s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 166s Setting up r-cran-stringr (1.5.1-1) ... 166s Setting up r-bioc-biocparallel (1.36.0-1) ... 166s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 166s Setting up r-cran-xml2 (1.3.6-1) ... 166s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 166s Setting up r-cran-survival (3.5-8-1) ... 166s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 166s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 166s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 166s Setting up r-cran-httr (1.4.7+dfsg-1) ... 166s Setting up r-cran-hms (1.1.3-1) ... 166s Setting up r-cran-memoise (2.0.1-1) ... 166s Setting up r-cran-purrr (1.0.2-1) ... 166s Setting up r-cran-blob (1.2.4-1) ... 166s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 166s Setting up r-bioc-xvector (0.42.0-1) ... 166s Setting up r-cran-dplyr (1.1.4-1) ... 166s Setting up r-cran-rsqlite (2.3.4-1) ... 166s Setting up r-cran-progress (1.2.3-1) ... 166s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 166s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 166s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 166s Setting up r-cran-tidyr (1.3.1-1) ... 166s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 166s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 166s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 166s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 166s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 166s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 166s Setting up r-bioc-annotationdbi (1.64.1-1) ... 166s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 166s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 166s Setting up r-bioc-genefilter (1.84.0-1) ... 166s Setting up r-bioc-genomicalignments (1.38.2-1) ... 166s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 166s Setting up r-bioc-rtracklayer (1.62.0-1) ... 166s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 166s Setting up r-bioc-bsgenome (1.70.2-1) ... 166s Setting up autopkgtest-satdep (0) ... 166s Processing triggers for man-db (2.12.0-3) ... 167s Processing triggers for install-info (7.1-3) ... 167s Processing triggers for libc-bin (2.39-0ubuntu2) ... 178s (Reading database ... 105266 files and directories currently installed.) 178s Removing autopkgtest-satdep (0) ... 179s autopkgtest [17:45:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 179s autopkgtest [17:45:25]: test pkg-r-autopkgtest: [----------------------- 179s Test: Try to load the R library rtracklayer 180s 180s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 180s Copyright (C) 2024 The R Foundation for Statistical Computing 180s Platform: aarch64-unknown-linux-gnu (64-bit) 180s 180s R is free software and comes with ABSOLUTELY NO WARRANTY. 180s You are welcome to redistribute it under certain conditions. 180s Type 'license()' or 'licence()' for distribution details. 180s 180s R is a collaborative project with many contributors. 180s Type 'contributors()' for more information and 180s 'citation()' on how to cite R or R packages in publications. 180s 180s Type 'demo()' for some demos, 'help()' for on-line help, or 180s 'help.start()' for an HTML browser interface to help. 180s Type 'q()' to quit R. 180s 180s > library('rtracklayer') 180s Loading required package: GenomicRanges 180s Loading required package: stats4 180s Loading required package: BiocGenerics 180s 180s Attaching package: ‘BiocGenerics’ 180s 180s The following objects are masked from ‘package:stats’: 180s 180s IQR, mad, sd, var, xtabs 180s 180s The following objects are masked from ‘package:base’: 180s 180s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 180s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 180s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 180s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 180s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 180s table, tapply, union, unique, unsplit, which.max, which.min 180s 180s Loading required package: S4Vectors 181s 181s Attaching package: ‘S4Vectors’ 181s 181s The following object is masked from ‘package:utils’: 181s 181s findMatches 181s 181s The following objects are masked from ‘package:base’: 181s 181s expand.grid, I, unname 181s 181s Loading required package: IRanges 182s Loading required package: GenomeInfoDb 189s > 189s > 189s Other tests are currently unsupported! 189s They will be progressively added. 191s autopkgtest [17:45:37]: test pkg-r-autopkgtest: -----------------------] 192s autopkgtest [17:45:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 192s pkg-r-autopkgtest PASS 193s autopkgtest [17:45:39]: @@@@@@@@@@@@@@@@@@@@ summary 193s pkg-r-autopkgtest PASS 212s Creating nova instance adt-noble-arm64-r-bioc-rtracklayer-20240316-174226-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...