0s autopkgtest [13:47:34]: starting date and time: 2024-03-16 13:47:34+0000 0s autopkgtest [13:47:34]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:47:34]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.i_udm6bn/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rtracklayer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-19.secgroup --name adt-noble-arm64-r-bioc-rtracklayer-20240316-134734-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 73s autopkgtest [13:48:47]: testbed dpkg architecture: arm64 73s autopkgtest [13:48:47]: testbed apt version: 2.7.12 73s autopkgtest [13:48:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 73s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 74s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 75s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 75s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 75s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 75s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 75s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 75s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 75s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 75s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 75s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 75s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 78s Fetched 9092 kB in 2s (3937 kB/s) 79s Reading package lists... 84s Reading package lists... 84s Building dependency tree... 84s Reading state information... 84s Calculating upgrade... 85s The following packages will be REMOVED: 85s libssl3 85s The following NEW packages will be installed: 85s libssl3t64 85s The following packages have been kept back: 85s curl 85s The following packages will be upgraded: 85s openssl ubuntu-minimal ubuntu-standard 85s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 85s Need to get 2775 kB of archives. 85s After this operation, 72.7 kB of additional disk space will be used. 85s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 86s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 86s Fetched 2775 kB in 1s (3907 kB/s) 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 87s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 87s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 87s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 87s wget depends on libssl3 (>= 3.0.0). 87s u-boot-tools depends on libssl3 (>= 3.0.0). 87s tnftp depends on libssl3 (>= 3.0.0). 87s tcpdump depends on libssl3 (>= 3.0.0). 87s systemd-resolved depends on libssl3 (>= 3.0.0). 87s systemd depends on libssl3 (>= 3.0.0). 87s sudo depends on libssl3 (>= 3.0.0). 87s sbsigntool depends on libssl3 (>= 3.0.0). 87s rsync depends on libssl3 (>= 3.0.0). 87s python3-cryptography depends on libssl3 (>= 3.0.0). 87s openssh-server depends on libssl3 (>= 3.0.10). 87s openssh-client depends on libssl3 (>= 3.0.10). 87s mtd-utils depends on libssl3 (>= 3.0.0). 87s mokutil depends on libssl3 (>= 3.0.0). 87s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 87s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 87s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 87s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 87s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 87s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 87s libnvme1 depends on libssl3 (>= 3.0.0). 87s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 87s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 87s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 87s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 87s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 87s kmod depends on libssl3 (>= 3.0.0). 87s dhcpcd-base depends on libssl3 (>= 3.0.0). 87s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 87s 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 87s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 87s Selecting previously unselected package libssl3t64:arm64. 87s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 87s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 87s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 88s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 88s Unpacking ubuntu-minimal (1.536) over (1.535) ... 89s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 89s Unpacking ubuntu-standard (1.536) over (1.535) ... 89s Setting up ubuntu-minimal (1.536) ... 89s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 89s Setting up ubuntu-standard (1.536) ... 89s Setting up openssl (3.0.13-0ubuntu1) ... 89s Processing triggers for man-db (2.12.0-3) ... 90s Processing triggers for libc-bin (2.39-0ubuntu2) ... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 92s sh: Attempting to set up Debian/Ubuntu apt sources automatically 92s sh: Distribution appears to be Ubuntu 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 94s eatmydata is already the newest version (131-1). 94s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 94s Reading package lists... 94s Building dependency tree... 94s Reading state information... 95s dbus is already the newest version (1.14.10-4ubuntu1). 95s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 95s Reading package lists... 95s Building dependency tree... 95s Reading state information... 96s rng-tools-debian is already the newest version (2.4). 96s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 96s Reading package lists... 97s Building dependency tree... 97s Reading state information... 97s The following packages will be REMOVED: 97s cloud-init* python3-configobj* python3-debconf* 98s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 98s After this operation, 3252 kB disk space will be freed. 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 98s Removing cloud-init (24.1.1-0ubuntu1) ... 99s Removing python3-configobj (5.0.8-3) ... 99s Removing python3-debconf (1.5.86) ... 99s Processing triggers for man-db (2.12.0-3) ... 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 100s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 101s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 101s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 101s invoke-rc.d: policy-rc.d denied execution of try-restart. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s linux-generic is already the newest version (6.8.0-11.11+1). 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 103s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 103s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 105s Reading package lists... 105s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s Calculating upgrade... 106s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 106s Reading package lists... 106s Building dependency tree... 106s Reading state information... 107s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 108s autopkgtest [13:49:22]: rebooting testbed after setup commands that affected boot 270s autopkgtest [13:52:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 273s autopkgtest [13:52:07]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rtracklayer 275s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (dsc) [2398 B] 275s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (tar) [4019 kB] 275s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rtracklayer 1.62.0-1 (diff) [27.2 kB] 278s gpgv: Signature made Thu Nov 30 17:25:54 2023 UTC 278s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 278s gpgv: issuer "tillea@rki.de" 278s gpgv: Can't check signature: No public key 278s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.62.0-1.dsc: no acceptable signature found 279s autopkgtest [13:52:13]: testing package r-bioc-rtracklayer version 1.62.0-1 279s autopkgtest [13:52:13]: build not needed 281s autopkgtest [13:52:15]: test pkg-r-autopkgtest: preparing testbed 282s Reading package lists... 282s Building dependency tree... 282s Reading state information... 283s Starting pkgProblemResolver with broken count: 0 283s Starting 2 pkgProblemResolver with broken count: 0 283s Done 283s The following additional packages will be installed: 283s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 283s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 283s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 283s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 283s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 283s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 283s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 283s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 283s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 283s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 283s libjpeg8-dev libjs-jquery liblapack-dev liblapack3 liblerc4 liblsan0 283s liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 283s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 283s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 283s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 283s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 283s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 283s linux-libc-dev node-html5shiv pkg-config pkg-r-autopkgtest pkgconf 283s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 283s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 283s r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 283s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 283s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 283s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-limma 283s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 283s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 283s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 283s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 283s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 283s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi 283s r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger 283s r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr 283s r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 283s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 283s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 283s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr 283s r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson 283s r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod 283s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 283s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 283s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 283s x11-common xdg-utils zip zlib1g-dev 283s Suggested packages: 283s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 283s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 283s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 283s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 283s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 283s libboost-contract1.83-dev libboost-coroutine1.83-dev 283s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 283s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 283s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 283s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 283s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 283s libboost-numpy1.83-dev libboost-program-options1.83-dev 283s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 283s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 283s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 283s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 283s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 283s glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 283s tcl8.6 tk8.6 nodejs elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 283s texlive-base texlive-latex-base texlive-plain-generic 283s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 283s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db 283s r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all r-cran-testthat 283s r-cran-rmarkdown r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc 283s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 283s r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr 283s r-cran-biocmanager r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats 283s r-cran-class r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger 283s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 283s r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn r-cran-ellipse 283s r-cran-gplots r-cran-locfit r-cran-mass r-bioc-sparsematrixstats 283s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi 283s r-cran-rmysql r-cran-shiny r-cran-lubridate r-cran-getopt r-cran-formattable 283s r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins r-cran-scales 283s r-cran-units r-cran-vdiffr r-cran-rcpp r-cran-rmpi r-cran-rlecuyer 283s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-evaluate 283s r-cran-here r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-plm 283s r-cran-zoo 283s Recommended packages: 283s bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools 283s r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr 283s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 283s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 283s r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio r-cran-decor 283s r-cran-desc r-cran-ggplot2 r-cran-lobstr r-cran-scales r-cran-rcpp 283s r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils 283s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-testit 283s r-cran-pkgload r-cran-waldo r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 283s r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown 283s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-fs r-cran-usethis 283s r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table 283s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot 283s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 283s x11-xserver-utils 284s The following NEW packages will be installed: 284s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 284s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 284s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 284s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 284s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 284s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 284s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 284s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 284s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 284s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 284s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 284s libjs-jquery liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 284s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 284s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 284s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 284s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 284s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 284s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 284s node-html5shiv pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 284s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 284s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 284s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 284s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 284s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 284s r-bioc-iranges r-bioc-keggrest r-bioc-limma r-bioc-matrixgenerics 284s r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 284s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 284s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 284s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 284s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 284s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi 284s r-cran-fastmap r-cran-filelock r-cran-formatr r-cran-futile.logger 284s r-cran-futile.options r-cran-generics r-cran-glue r-cran-hms r-cran-httr 284s r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 284s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 284s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 284s r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress r-cran-purrr 284s r-cran-r6 r-cran-rappdirs r-cran-rcurl r-cran-restfulr r-cran-rjson 284s r-cran-rlang r-cran-rsqlite r-cran-runit r-cran-snow r-cran-statmod 284s r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble 284s r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr 284s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 284s x11-common xdg-utils zip zlib1g-dev 284s 0 upgraded, 210 newly installed, 0 to remove and 0 not upgraded. 284s Need to get 323 MB/323 MB of archives. 284s After this operation, 1142 MB of additional disk space will be used. 284s Get:1 /tmp/autopkgtest.pygarr/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 284s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 284s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 284s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 284s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 284s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 284s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 284s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 284s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 284s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 284s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 285s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 285s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 285s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 285s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 285s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 285s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 285s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 285s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 285s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 285s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 285s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 285s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 285s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 285s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 285s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 285s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 285s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 285s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 285s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 286s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 286s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 286s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 286s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 286s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 286s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 286s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 286s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 286s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 286s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 286s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 286s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 286s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 286s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 286s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 286s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 286s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 286s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 286s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 286s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 286s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 286s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 286s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 286s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 286s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 286s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 286s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 286s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 286s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 286s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 286s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 287s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 287s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 287s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 287s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 287s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 287s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 287s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 287s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 287s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 287s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 287s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 287s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 287s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 287s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 287s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 287s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 287s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 287s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 287s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 287s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 287s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 287s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 287s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 287s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 287s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 287s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 287s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 287s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 287s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 287s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 287s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 287s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 287s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 287s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 287s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 287s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 287s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 287s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 287s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 287s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 287s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 287s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 287s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 288s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 288s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 288s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 289s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 289s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 289s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 289s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 289s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 289s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 289s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 289s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 289s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 289s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 289s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 289s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 289s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 289s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 289s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 289s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 289s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 289s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 289s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 289s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 289s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 289s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 289s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 289s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 289s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 289s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 289s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 289s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 289s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 289s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 289s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 289s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 289s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 289s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 289s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 289s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 289s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 290s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 290s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 290s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 290s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 290s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 291s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 291s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 291s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 291s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 291s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 291s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 291s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 291s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 291s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 291s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 291s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 291s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 291s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 291s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 291s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 291s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 291s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 291s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 291s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 291s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 291s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 291s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 291s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 291s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 291s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 291s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 291s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 291s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 291s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 291s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 291s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 291s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 291s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 291s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 291s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 291s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 291s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 291s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 291s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 291s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 291s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 291s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 292s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 292s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 292s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 292s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 292s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 292s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 292s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 292s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 292s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 292s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 292s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 292s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 293s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 293s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 293s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 293s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 293s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 293s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 295s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 297s Preconfiguring packages ... 298s Fetched 323 MB in 12s (27.4 MB/s) 298s Selecting previously unselected package libc-dev-bin. 298s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 298s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 298s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 298s Selecting previously unselected package linux-libc-dev:arm64. 299s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 299s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 299s Selecting previously unselected package libcrypt-dev:arm64. 299s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 299s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 299s Selecting previously unselected package libtirpc-dev:arm64. 299s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 299s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 299s Selecting previously unselected package libnsl-dev:arm64. 300s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 300s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 300s Selecting previously unselected package rpcsvc-proto. 301s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 301s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 301s Selecting previously unselected package libc6-dev:arm64. 301s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 301s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 302s Selecting previously unselected package libisl23:arm64. 302s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 302s Unpacking libisl23:arm64 (0.26-3) ... 302s Selecting previously unselected package libmpc3:arm64. 303s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 303s Unpacking libmpc3:arm64 (1.3.1-1) ... 303s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 303s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 303s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 303s Selecting previously unselected package cpp-13. 303s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 303s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 303s Selecting previously unselected package cpp-aarch64-linux-gnu. 303s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 303s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 304s Selecting previously unselected package cpp. 304s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 304s Unpacking cpp (4:13.2.0-7ubuntu1) ... 304s Selecting previously unselected package libcc1-0:arm64. 305s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 305s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libgomp1:arm64. 305s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 305s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 305s Selecting previously unselected package libitm1:arm64. 306s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 306s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 306s Selecting previously unselected package libatomic1:arm64. 306s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 306s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 306s Selecting previously unselected package libasan8:arm64. 306s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 306s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 306s Selecting previously unselected package liblsan0:arm64. 306s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 306s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 306s Selecting previously unselected package libtsan2:arm64. 307s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 307s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libubsan1:arm64. 307s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 307s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libhwasan0:arm64. 307s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 307s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 307s Selecting previously unselected package libgcc-13-dev:arm64. 307s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 307s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 307s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 307s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 307s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 308s Selecting previously unselected package gcc-13. 308s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 308s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 308s Selecting previously unselected package gcc-aarch64-linux-gnu. 308s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 308s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 308s Selecting previously unselected package gcc. 308s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 308s Unpacking gcc (4:13.2.0-7ubuntu1) ... 308s Selecting previously unselected package libstdc++-13-dev:arm64. 308s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 308s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 308s Selecting previously unselected package g++-13-aarch64-linux-gnu. 308s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 308s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 308s Selecting previously unselected package g++-13. 308s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 308s Unpacking g++-13 (13.2.0-17ubuntu2) ... 308s Selecting previously unselected package g++-aarch64-linux-gnu. 308s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 308s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 309s Selecting previously unselected package g++. 309s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 309s Unpacking g++ (4:13.2.0-7ubuntu1) ... 309s Selecting previously unselected package build-essential. 309s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 309s Unpacking build-essential (12.10ubuntu1) ... 309s Selecting previously unselected package dctrl-tools. 309s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 309s Unpacking dctrl-tools (2.24-3build2) ... 309s Selecting previously unselected package fonts-dejavu-mono. 309s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 309s Unpacking fonts-dejavu-mono (2.37-8) ... 309s Selecting previously unselected package fonts-dejavu-core. 309s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 309s Unpacking fonts-dejavu-core (2.37-8) ... 309s Selecting previously unselected package fontconfig-config. 309s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 309s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 309s Selecting previously unselected package libfontconfig1:arm64. 309s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 309s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 309s Selecting previously unselected package fontconfig. 309s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 309s Unpacking fontconfig (2.15.0-1ubuntu1) ... 309s Selecting previously unselected package libgfortran5:arm64. 309s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 309s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 310s Selecting previously unselected package libgfortran-13-dev:arm64. 310s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 310s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 310s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 310s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package gfortran-13. 310s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 310s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 310s Selecting previously unselected package gfortran-aarch64-linux-gnu. 310s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 310s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package gfortran. 310s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 310s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 310s Selecting previously unselected package icu-devtools. 310s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 310s Unpacking icu-devtools (74.2-1ubuntu1) ... 310s Selecting previously unselected package libblas3:arm64. 310s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 310s Unpacking libblas3:arm64 (3.12.0-3) ... 310s Selecting previously unselected package libblas-dev:arm64. 310s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 310s Unpacking libblas-dev:arm64 (3.12.0-3) ... 310s Selecting previously unselected package libboost1.83-dev:arm64. 310s Preparing to unpack .../048-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 310s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 312s Selecting previously unselected package libboost-dev:arm64. 312s Preparing to unpack .../049-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 312s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 312s Selecting previously unselected package libbz2-dev:arm64. 312s Preparing to unpack .../050-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 312s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 312s Selecting previously unselected package libpixman-1-0:arm64. 312s Preparing to unpack .../051-libpixman-1-0_0.42.2-1_arm64.deb ... 312s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 312s Selecting previously unselected package libxcb-render0:arm64. 312s Preparing to unpack .../052-libxcb-render0_1.15-1_arm64.deb ... 312s Unpacking libxcb-render0:arm64 (1.15-1) ... 312s Selecting previously unselected package libxcb-shm0:arm64. 312s Preparing to unpack .../053-libxcb-shm0_1.15-1_arm64.deb ... 312s Unpacking libxcb-shm0:arm64 (1.15-1) ... 312s Selecting previously unselected package libxrender1:arm64. 312s Preparing to unpack .../054-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 312s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 312s Selecting previously unselected package libcairo2:arm64. 312s Preparing to unpack .../055-libcairo2_1.18.0-1_arm64.deb ... 312s Unpacking libcairo2:arm64 (1.18.0-1) ... 312s Selecting previously unselected package libdatrie1:arm64. 312s Preparing to unpack .../056-libdatrie1_0.2.13-3_arm64.deb ... 312s Unpacking libdatrie1:arm64 (0.2.13-3) ... 312s Selecting previously unselected package libdeflate0:arm64. 313s Preparing to unpack .../057-libdeflate0_1.19-1_arm64.deb ... 313s Unpacking libdeflate0:arm64 (1.19-1) ... 313s Selecting previously unselected package libgraphite2-3:arm64. 313s Preparing to unpack .../058-libgraphite2-3_1.3.14-2_arm64.deb ... 313s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 313s Selecting previously unselected package libharfbuzz0b:arm64. 313s Preparing to unpack .../059-libharfbuzz0b_8.3.0-2_arm64.deb ... 313s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 313s Selecting previously unselected package x11-common. 313s Preparing to unpack .../060-x11-common_1%3a7.7+23ubuntu2_all.deb ... 313s Unpacking x11-common (1:7.7+23ubuntu2) ... 313s Selecting previously unselected package libice6:arm64. 313s Preparing to unpack .../061-libice6_2%3a1.0.10-1build2_arm64.deb ... 313s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 313s Selecting previously unselected package libicu-dev:arm64. 313s Preparing to unpack .../062-libicu-dev_74.2-1ubuntu1_arm64.deb ... 313s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 313s Selecting previously unselected package libjpeg-turbo8:arm64. 313s Preparing to unpack .../063-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 313s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 313s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 313s Preparing to unpack .../064-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 313s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 313s Selecting previously unselected package libjpeg8:arm64. 313s Preparing to unpack .../065-libjpeg8_8c-2ubuntu11_arm64.deb ... 313s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 313s Selecting previously unselected package libjpeg8-dev:arm64. 313s Preparing to unpack .../066-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 313s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 314s Selecting previously unselected package libjpeg-dev:arm64. 314s Preparing to unpack .../067-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 314s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 314s Selecting previously unselected package libjs-jquery. 314s Preparing to unpack .../068-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 314s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 314s Selecting previously unselected package liblapack3:arm64. 314s Preparing to unpack .../069-liblapack3_3.12.0-3_arm64.deb ... 314s Unpacking liblapack3:arm64 (3.12.0-3) ... 314s Selecting previously unselected package liblapack-dev:arm64. 314s Preparing to unpack .../070-liblapack-dev_3.12.0-3_arm64.deb ... 314s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 314s Selecting previously unselected package liblerc4:arm64. 314s Preparing to unpack .../071-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 314s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 314s Selecting previously unselected package libncurses-dev:arm64. 314s Preparing to unpack .../072-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 314s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 314s Selecting previously unselected package libthai-data. 314s Preparing to unpack .../073-libthai-data_0.1.29-2_all.deb ... 314s Unpacking libthai-data (0.1.29-2) ... 314s Selecting previously unselected package libthai0:arm64. 314s Preparing to unpack .../074-libthai0_0.1.29-2_arm64.deb ... 314s Unpacking libthai0:arm64 (0.1.29-2) ... 314s Selecting previously unselected package libpango-1.0-0:arm64. 314s Preparing to unpack .../075-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 314s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpangoft2-1.0-0:arm64. 314s Preparing to unpack .../076-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 314s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpangocairo-1.0-0:arm64. 314s Preparing to unpack .../077-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 314s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 314s Selecting previously unselected package libpaper1:arm64. 314s Preparing to unpack .../078-libpaper1_1.1.29_arm64.deb ... 314s Unpacking libpaper1:arm64 (1.1.29) ... 314s Selecting previously unselected package libpaper-utils. 314s Preparing to unpack .../079-libpaper-utils_1.1.29_arm64.deb ... 314s Unpacking libpaper-utils (1.1.29) ... 314s Selecting previously unselected package libpcre2-16-0:arm64. 314s Preparing to unpack .../080-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 314s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-32-0:arm64. 315s Preparing to unpack .../081-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 315s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-posix3:arm64. 315s Preparing to unpack .../082-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 315s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpcre2-dev:arm64. 315s Preparing to unpack .../083-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 315s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 315s Selecting previously unselected package libpkgconf3:arm64. 315s Preparing to unpack .../084-libpkgconf3_1.8.1-2_arm64.deb ... 315s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 317s Selecting previously unselected package zlib1g-dev:arm64. 317s Preparing to unpack .../085-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 317s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 317s Selecting previously unselected package libpng-dev:arm64. 317s Preparing to unpack .../086-libpng-dev_1.6.43-1_arm64.deb ... 317s Unpacking libpng-dev:arm64 (1.6.43-1) ... 317s Selecting previously unselected package libreadline-dev:arm64. 317s Preparing to unpack .../087-libreadline-dev_8.2-3_arm64.deb ... 317s Unpacking libreadline-dev:arm64 (8.2-3) ... 317s Selecting previously unselected package libsharpyuv0:arm64. 317s Preparing to unpack .../088-libsharpyuv0_1.3.2-0.4_arm64.deb ... 317s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 317s Selecting previously unselected package libsm6:arm64. 317s Preparing to unpack .../089-libsm6_2%3a1.2.3-1build2_arm64.deb ... 317s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 317s Selecting previously unselected package libtcl8.6:arm64. 317s Preparing to unpack .../090-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 317s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 317s Selecting previously unselected package libjbig0:arm64. 317s Preparing to unpack .../091-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 317s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 317s Selecting previously unselected package libwebp7:arm64. 317s Preparing to unpack .../092-libwebp7_1.3.2-0.4_arm64.deb ... 317s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 317s Selecting previously unselected package libtiff6:arm64. 317s Preparing to unpack .../093-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 317s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 317s Selecting previously unselected package libxft2:arm64. 317s Preparing to unpack .../094-libxft2_2.3.6-1_arm64.deb ... 317s Unpacking libxft2:arm64 (2.3.6-1) ... 317s Selecting previously unselected package libxss1:arm64. 317s Preparing to unpack .../095-libxss1_1%3a1.2.3-1build2_arm64.deb ... 317s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 317s Selecting previously unselected package libtk8.6:arm64. 317s Preparing to unpack .../096-libtk8.6_8.6.13-2_arm64.deb ... 317s Unpacking libtk8.6:arm64 (8.6.13-2) ... 317s Selecting previously unselected package libxt6:arm64. 317s Preparing to unpack .../097-libxt6_1%3a1.2.1-1.1_arm64.deb ... 317s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 317s Selecting previously unselected package node-html5shiv. 317s Preparing to unpack .../098-node-html5shiv_3.7.3+dfsg-5_all.deb ... 317s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 317s Selecting previously unselected package pkgconf-bin. 317s Preparing to unpack .../099-pkgconf-bin_1.8.1-2_arm64.deb ... 317s Unpacking pkgconf-bin (1.8.1-2) ... 317s Selecting previously unselected package pkgconf:arm64. 317s Preparing to unpack .../100-pkgconf_1.8.1-2_arm64.deb ... 317s Unpacking pkgconf:arm64 (1.8.1-2) ... 317s Selecting previously unselected package pkg-config:arm64. 317s Preparing to unpack .../101-pkg-config_1.8.1-2_arm64.deb ... 317s Unpacking pkg-config:arm64 (1.8.1-2) ... 317s Selecting previously unselected package zip. 317s Preparing to unpack .../102-zip_3.0-13_arm64.deb ... 317s Unpacking zip (3.0-13) ... 317s Selecting previously unselected package unzip. 317s Preparing to unpack .../103-unzip_6.0-28ubuntu3_arm64.deb ... 317s Unpacking unzip (6.0-28ubuntu3) ... 317s Selecting previously unselected package xdg-utils. 317s Preparing to unpack .../104-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 317s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 317s Selecting previously unselected package r-base-core. 317s Preparing to unpack .../105-r-base-core_4.3.2-1build1_arm64.deb ... 317s Unpacking r-base-core (4.3.2-1build1) ... 317s Selecting previously unselected package liblzma-dev:arm64. 317s Preparing to unpack .../106-liblzma-dev_5.4.5-0.3_arm64.deb ... 317s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 317s Selecting previously unselected package r-base-dev. 317s Preparing to unpack .../107-r-base-dev_4.3.2-1build1_all.deb ... 317s Unpacking r-base-dev (4.3.2-1build1) ... 317s Selecting previously unselected package pkg-r-autopkgtest. 318s Preparing to unpack .../108-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 318s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 318s Selecting previously unselected package r-bioc-biocgenerics. 318s Preparing to unpack .../109-r-bioc-biocgenerics_0.48.1-2_all.deb ... 318s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 318s Selecting previously unselected package r-bioc-biobase. 318s Preparing to unpack .../110-r-bioc-biobase_2.62.0-1_arm64.deb ... 318s Unpacking r-bioc-biobase (2.62.0-1) ... 318s Selecting previously unselected package r-bioc-s4vectors. 318s Preparing to unpack .../111-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 318s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 318s Selecting previously unselected package r-bioc-iranges. 318s Preparing to unpack .../112-r-bioc-iranges_2.36.0-1_arm64.deb ... 318s Unpacking r-bioc-iranges (2.36.0-1) ... 318s Selecting previously unselected package r-cran-dbi. 318s Preparing to unpack .../113-r-cran-dbi_1.2.2-1_all.deb ... 318s Unpacking r-cran-dbi (1.2.2-1) ... 318s Selecting previously unselected package r-cran-bit. 318s Preparing to unpack .../114-r-cran-bit_4.0.5-1_arm64.deb ... 318s Unpacking r-cran-bit (4.0.5-1) ... 318s Selecting previously unselected package r-cran-bit64. 318s Preparing to unpack .../115-r-cran-bit64_4.0.5-1_arm64.deb ... 318s Unpacking r-cran-bit64 (4.0.5-1) ... 318s Selecting previously unselected package r-cran-rlang. 318s Preparing to unpack .../116-r-cran-rlang_1.1.3-1_arm64.deb ... 318s Unpacking r-cran-rlang (1.1.3-1) ... 318s Selecting previously unselected package r-cran-cli. 318s Preparing to unpack .../117-r-cran-cli_3.6.2-1_arm64.deb ... 318s Unpacking r-cran-cli (3.6.2-1) ... 318s Selecting previously unselected package r-cran-glue. 318s Preparing to unpack .../118-r-cran-glue_1.7.0-1_arm64.deb ... 318s Unpacking r-cran-glue (1.7.0-1) ... 319s Selecting previously unselected package r-cran-lifecycle. 319s Preparing to unpack .../119-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 319s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 319s Selecting previously unselected package r-cran-vctrs. 319s Preparing to unpack .../120-r-cran-vctrs_0.6.5-1_arm64.deb ... 319s Unpacking r-cran-vctrs (0.6.5-1) ... 319s Selecting previously unselected package r-cran-blob. 319s Preparing to unpack .../121-r-cran-blob_1.2.4-1_all.deb ... 319s Unpacking r-cran-blob (1.2.4-1) ... 319s Selecting previously unselected package r-cran-fastmap. 319s Preparing to unpack .../122-r-cran-fastmap_1.1.1-1_arm64.deb ... 319s Unpacking r-cran-fastmap (1.1.1-1) ... 319s Selecting previously unselected package r-cran-cachem. 319s Preparing to unpack .../123-r-cran-cachem_1.0.8-1_arm64.deb ... 319s Unpacking r-cran-cachem (1.0.8-1) ... 319s Selecting previously unselected package r-cran-memoise. 319s Preparing to unpack .../124-r-cran-memoise_2.0.1-1_all.deb ... 319s Unpacking r-cran-memoise (2.0.1-1) ... 319s Selecting previously unselected package r-cran-pkgconfig. 319s Preparing to unpack .../125-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 319s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 319s Selecting previously unselected package r-cran-plogr. 319s Preparing to unpack .../126-r-cran-plogr_0.2.0-3build1_all.deb ... 319s Unpacking r-cran-plogr (0.2.0-3build1) ... 319s Selecting previously unselected package r-cran-cpp11. 319s Preparing to unpack .../127-r-cran-cpp11_0.4.7-1_all.deb ... 319s Unpacking r-cran-cpp11 (0.4.7-1) ... 319s Selecting previously unselected package r-cran-rsqlite. 319s Preparing to unpack .../128-r-cran-rsqlite_2.3.4-1_arm64.deb ... 319s Unpacking r-cran-rsqlite (2.3.4-1) ... 319s Selecting previously unselected package r-cran-curl. 319s Preparing to unpack .../129-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 319s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 319s Selecting previously unselected package r-cran-jsonlite. 319s Preparing to unpack .../130-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 319s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 319s Selecting previously unselected package r-cran-mime. 319s Preparing to unpack .../131-r-cran-mime_0.12-1_arm64.deb ... 319s Unpacking r-cran-mime (0.12-1) ... 319s Selecting previously unselected package r-cran-sys. 319s Preparing to unpack .../132-r-cran-sys_3.4.2-1_arm64.deb ... 319s Unpacking r-cran-sys (3.4.2-1) ... 319s Selecting previously unselected package r-cran-askpass. 319s Preparing to unpack .../133-r-cran-askpass_1.2.0-1_arm64.deb ... 319s Unpacking r-cran-askpass (1.2.0-1) ... 319s Selecting previously unselected package r-cran-openssl. 319s Preparing to unpack .../134-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 319s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 319s Selecting previously unselected package r-cran-r6. 320s Preparing to unpack .../135-r-cran-r6_2.5.1-1_all.deb ... 320s Unpacking r-cran-r6 (2.5.1-1) ... 320s Selecting previously unselected package r-cran-httr. 320s Preparing to unpack .../136-r-cran-httr_1.4.7+dfsg-1_all.deb ... 320s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 320s Selecting previously unselected package r-cran-png. 320s Preparing to unpack .../137-r-cran-png_0.1-8-1_arm64.deb ... 320s Unpacking r-cran-png (0.1-8-1) ... 320s Selecting previously unselected package r-bioc-zlibbioc. 320s Preparing to unpack .../138-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 320s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 320s Selecting previously unselected package r-bioc-xvector. 320s Preparing to unpack .../139-r-bioc-xvector_0.42.0-1_arm64.deb ... 320s Unpacking r-bioc-xvector (0.42.0-1) ... 320s Selecting previously unselected package r-cran-bitops. 320s Preparing to unpack .../140-r-cran-bitops_1.0-7-1_arm64.deb ... 320s Unpacking r-cran-bitops (1.0-7-1) ... 320s Selecting previously unselected package r-cran-rcurl. 320s Preparing to unpack .../141-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 320s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 320s Selecting previously unselected package r-bioc-genomeinfodbdata. 320s Preparing to unpack .../142-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 320s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 320s Selecting previously unselected package r-bioc-genomeinfodb. 320s Preparing to unpack .../143-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 320s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 320s Selecting previously unselected package r-cran-crayon. 320s Preparing to unpack .../144-r-cran-crayon_1.5.2-1_all.deb ... 320s Unpacking r-cran-crayon (1.5.2-1) ... 320s Selecting previously unselected package r-bioc-biostrings. 320s Preparing to unpack .../145-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 320s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 321s Selecting previously unselected package r-bioc-keggrest. 321s Preparing to unpack .../146-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 321s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 321s Selecting previously unselected package r-bioc-annotationdbi. 321s Preparing to unpack .../147-r-bioc-annotationdbi_1.64.1-1_all.deb ... 321s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 321s Selecting previously unselected package r-cran-xml. 321s Preparing to unpack .../148-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 321s Unpacking r-cran-xml (3.99-0.16.1-1) ... 321s Selecting previously unselected package r-cran-xtable. 321s Preparing to unpack .../149-r-cran-xtable_1%3a1.8-4-2_all.deb ... 321s Unpacking r-cran-xtable (1:1.8-4-2) ... 321s Selecting previously unselected package r-bioc-annotate. 321s Preparing to unpack .../150-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 321s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 321s Selecting previously unselected package r-cran-generics. 321s Preparing to unpack .../151-r-cran-generics_0.1.3-1_all.deb ... 321s Unpacking r-cran-generics (0.1.3-1) ... 321s Selecting previously unselected package r-cran-magrittr. 321s Preparing to unpack .../152-r-cran-magrittr_2.0.3-1_arm64.deb ... 321s Unpacking r-cran-magrittr (2.0.3-1) ... 321s Selecting previously unselected package r-cran-fansi. 321s Preparing to unpack .../153-r-cran-fansi_1.0.5-1_arm64.deb ... 321s Unpacking r-cran-fansi (1.0.5-1) ... 321s Selecting previously unselected package r-cran-utf8. 321s Preparing to unpack .../154-r-cran-utf8_1.2.4-1_arm64.deb ... 321s Unpacking r-cran-utf8 (1.2.4-1) ... 321s Selecting previously unselected package r-cran-pillar. 321s Preparing to unpack .../155-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 321s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 321s Selecting previously unselected package r-cran-tibble. 321s Preparing to unpack .../156-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 321s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 321s Selecting previously unselected package r-cran-withr. 322s Preparing to unpack .../157-r-cran-withr_2.5.0-1_all.deb ... 322s Unpacking r-cran-withr (2.5.0-1) ... 322s Selecting previously unselected package r-cran-tidyselect. 322s Preparing to unpack .../158-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 322s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 322s Selecting previously unselected package r-cran-dplyr. 322s Preparing to unpack .../159-r-cran-dplyr_1.1.4-1_arm64.deb ... 322s Unpacking r-cran-dplyr (1.1.4-1) ... 322s Selecting previously unselected package r-cran-purrr. 322s Preparing to unpack .../160-r-cran-purrr_1.0.2-1_arm64.deb ... 322s Unpacking r-cran-purrr (1.0.2-1) ... 322s Selecting previously unselected package r-cran-stringi. 322s Preparing to unpack .../161-r-cran-stringi_1.8.3-1_arm64.deb ... 322s Unpacking r-cran-stringi (1.8.3-1) ... 322s Selecting previously unselected package r-cran-stringr. 323s Preparing to unpack .../162-r-cran-stringr_1.5.1-1_all.deb ... 323s Unpacking r-cran-stringr (1.5.1-1) ... 323s Selecting previously unselected package r-cran-tidyr. 323s Preparing to unpack .../163-r-cran-tidyr_1.3.1-1_arm64.deb ... 323s Unpacking r-cran-tidyr (1.3.1-1) ... 323s Selecting previously unselected package r-cran-dbplyr. 323s Preparing to unpack .../164-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 323s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 323s Selecting previously unselected package r-cran-filelock. 325s Preparing to unpack .../165-r-cran-filelock_1.0.3-1_arm64.deb ... 325s Unpacking r-cran-filelock (1.0.3-1) ... 325s Selecting previously unselected package r-bioc-biocfilecache. 326s Preparing to unpack .../166-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 326s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 326s Selecting previously unselected package r-bioc-biocio. 326s Preparing to unpack .../167-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 326s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 326s Selecting previously unselected package r-cran-formatr. 326s Preparing to unpack .../168-r-cran-formatr_1.14-1_all.deb ... 326s Unpacking r-cran-formatr (1.14-1) ... 326s Selecting previously unselected package r-cran-lambda.r. 326s Preparing to unpack .../169-r-cran-lambda.r_1.2.4-2build1_all.deb ... 326s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 326s Selecting previously unselected package r-cran-futile.options. 326s Preparing to unpack .../170-r-cran-futile.options_1.0.1-3build1_all.deb ... 326s Unpacking r-cran-futile.options (1.0.1-3build1) ... 326s Selecting previously unselected package r-cran-futile.logger. 326s Preparing to unpack .../171-r-cran-futile.logger_1.4.3-4build1_all.deb ... 326s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 326s Selecting previously unselected package r-cran-snow. 326s Preparing to unpack .../172-r-cran-snow_1%3a0.4.4-2_all.deb ... 326s Unpacking r-cran-snow (1:0.4.4-2) ... 326s Selecting previously unselected package r-cran-codetools. 326s Preparing to unpack .../173-r-cran-codetools_0.2-19-1_all.deb ... 326s Unpacking r-cran-codetools (0.2-19-1) ... 327s Selecting previously unselected package r-cran-bh. 327s Preparing to unpack .../174-r-cran-bh_1.84.0-1_all.deb ... 327s Unpacking r-cran-bh (1.84.0-1) ... 327s Selecting previously unselected package r-bioc-biocparallel. 327s Preparing to unpack .../175-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 327s Unpacking r-bioc-biocparallel (1.36.0-1) ... 327s Selecting previously unselected package r-cran-hms. 327s Preparing to unpack .../176-r-cran-hms_1.1.3-1_all.deb ... 327s Unpacking r-cran-hms (1.1.3-1) ... 327s Selecting previously unselected package r-cran-prettyunits. 327s Preparing to unpack .../177-r-cran-prettyunits_1.2.0-1_all.deb ... 327s Unpacking r-cran-prettyunits (1.2.0-1) ... 327s Selecting previously unselected package r-cran-progress. 327s Preparing to unpack .../178-r-cran-progress_1.2.3-1_all.deb ... 327s Unpacking r-cran-progress (1.2.3-1) ... 327s Selecting previously unselected package r-cran-digest. 327s Preparing to unpack .../179-r-cran-digest_0.6.34-1_arm64.deb ... 327s Unpacking r-cran-digest (0.6.34-1) ... 327s Selecting previously unselected package r-cran-rappdirs. 327s Preparing to unpack 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r-bioc-rsamtools (2.18.0+dfsg-1) ... 328s Selecting previously unselected package r-cran-matrixstats. 328s Preparing to unpack .../186-r-cran-matrixstats_1.2.0-1_arm64.deb ... 328s Unpacking r-cran-matrixstats (1.2.0-1) ... 328s Selecting previously unselected package r-bioc-matrixgenerics. 328s Preparing to unpack .../187-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 328s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 328s Selecting previously unselected package r-cran-lattice. 328s Preparing to unpack .../188-r-cran-lattice_0.22-5-1_arm64.deb ... 328s Unpacking r-cran-lattice (0.22-5-1) ... 328s Selecting previously unselected package r-cran-matrix. 328s Preparing to unpack .../189-r-cran-matrix_1.6-5-1_arm64.deb ... 328s Unpacking r-cran-matrix (1.6-5-1) ... 328s Selecting previously unselected package r-cran-abind. 328s Preparing to unpack .../190-r-cran-abind_1.4-5-2_all.deb ... 328s Unpacking r-cran-abind (1.4-5-2) ... 328s Selecting previously unselected package r-bioc-s4arrays. 328s Preparing to unpack .../191-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 328s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 328s Selecting previously unselected package r-bioc-sparsearray. 329s Preparing to unpack .../192-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 329s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 329s Selecting previously unselected package r-bioc-delayedarray. 329s Preparing to unpack .../193-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 329s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 329s Selecting previously unselected package r-bioc-summarizedexperiment. 329s Preparing to unpack .../194-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 329s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 329s Selecting previously unselected package r-bioc-genomicalignments. 329s Preparing to unpack .../195-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 329s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 329s Selecting previously unselected package r-cran-littler. 330s Preparing to unpack .../196-r-cran-littler_0.3.19-1_arm64.deb ... 330s Unpacking r-cran-littler (0.3.19-1) ... 330s Selecting previously unselected package r-cran-rjson. 330s Preparing to unpack .../197-r-cran-rjson_0.2.21-1_arm64.deb ... 330s Unpacking r-cran-rjson (0.2.21-1) ... 331s Selecting previously unselected package r-cran-yaml. 331s Preparing to unpack .../198-r-cran-yaml_2.3.8-1_arm64.deb ... 331s Unpacking r-cran-yaml (2.3.8-1) ... 331s Selecting previously unselected package r-cran-restfulr. 331s Preparing to unpack .../199-r-cran-restfulr_0.0.15-1_arm64.deb ... 331s Unpacking r-cran-restfulr (0.0.15-1) ... 331s Selecting previously unselected package r-bioc-rtracklayer. 331s Preparing to unpack .../200-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 331s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 331s Selecting previously unselected package r-bioc-bsgenome. 331s Preparing to unpack .../201-r-bioc-bsgenome_1.70.2-1_all.deb ... 331s Unpacking r-bioc-bsgenome 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r-bioc-org.hs.eg.db. 331s Preparing to unpack .../207-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 331s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 333s Selecting previously unselected package r-cran-runit. 333s Preparing to unpack .../208-r-cran-runit_0.4.32-3_all.deb ... 333s Unpacking r-cran-runit (0.4.32-3) ... 333s Selecting previously unselected package autopkgtest-satdep. 333s Preparing to unpack .../209-1-autopkgtest-satdep.deb ... 333s Unpacking autopkgtest-satdep (0) ... 333s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 333s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 333s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 333s Setting up libpaper1:arm64 (1.1.29) ... 333s 333s Creating config file /etc/papersize with new version 333s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 333s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 333s Setting up libdatrie1:arm64 (0.2.13-3) ... 333s Setting up libxcb-render0:arm64 (1.15-1) ... 333s Setting up unzip (6.0-28ubuntu3) ... 333s 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libicu-dev:arm64 (74.2-1ubuntu1) ... 335s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 335s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 335s Setting up fontconfig (2.15.0-1ubuntu1) ... 337s Regenerating fonts cache... done. 337s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 337s Setting up libxft2:arm64 (2.3.6-1) ... 337s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 337s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 337s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 337s Setting up cpp-13 (13.2.0-17ubuntu2) ... 337s Setting up libtk8.6:arm64 (8.6.13-2) ... 337s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 337s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 337s Setting up libreadline-dev:arm64 (8.2-3) ... 337s Setting up libcairo2:arm64 (1.18.0-1) ... 337s Setting up gcc-13 (13.2.0-17ubuntu2) ... 337s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 337s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 337s 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(1.14-1) ... 338s Setting up r-cran-xml (3.99-0.16.1-1) ... 338s Setting up r-cran-statmod (1.5.0-1) ... 338s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 338s Setting up r-cran-r6 (2.5.1-1) ... 338s Setting up r-cran-magrittr (2.0.3-1) ... 338s Setting up r-cran-rappdirs (0.3.3-1) ... 338s Setting up r-cran-filelock (1.0.3-1) ... 338s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 338s Setting up r-cran-littler (0.3.19-1) ... 338s Setting up r-cran-bh (1.84.0-1) ... 338s Setting up r-cran-curl (5.2.0+dfsg-1) ... 338s Setting up r-cran-codetools (0.2-19-1) ... 338s Setting up r-bioc-biocgenerics (0.48.1-2) ... 338s Setting up r-cran-rlang (1.1.3-1) ... 338s Setting up r-cran-matrixstats (1.2.0-1) ... 338s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 338s Setting up r-cran-sys (3.4.2-1) ... 338s Setting up r-cran-plogr (0.2.0-3build1) ... 338s Setting up r-cran-withr (2.5.0-1) ... 338s Setting up r-cran-mime (0.12-1) ... 338s Setting up r-cran-generics (0.1.3-1) ... 338s Setting up r-cran-abind (1.4-5-2) ... 338s Setting up r-cran-digest (0.6.34-1) ... 338s Setting up r-cran-yaml (2.3.8-1) ... 338s Setting up r-cran-lambda.r (1.2.4-2build1) ... 338s Setting up r-cran-dbi (1.2.2-1) ... 338s Setting up r-cran-prettyunits (1.2.0-1) ... 338s Setting up r-cran-fansi (1.0.5-1) ... 338s Setting up r-cran-snow (1:0.4.4-2) ... 338s Setting up r-cran-glue (1.7.0-1) ... 338s Setting up r-cran-bit (4.0.5-1) ... 338s Setting up r-cran-xtable (1:1.8-4-2) ... 338s Setting up r-cran-cli (3.6.2-1) ... 338s Setting up gfortran (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 338s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 338s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 338s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 338s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 338s Setting up r-cran-bitops (1.0-7-1) ... 338s Setting up r-cran-bit64 (4.0.5-1) ... 338s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 338s Setting up r-cran-askpass (1.2.0-1) ... 338s Setting up r-cran-fastmap (1.1.1-1) ... 338s Setting up r-cran-png (0.1-8-1) ... 338s Setting up r-bioc-biobase (2.62.0-1) ... 338s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 338s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 338s Setting up r-cran-utf8 (1.2.4-1) ... 338s Setting up r-cran-stringi (1.8.3-1) ... 338s Setting up r-cran-cpp11 (0.4.7-1) ... 338s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 338s Setting up r-cran-runit (0.4.32-3) ... 338s Setting up r-cran-futile.logger (1.4.3-4build1) ... 338s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 338s Setting up r-cran-matrix (1.6-5-1) ... 338s Setting up g++ (4:13.2.0-7ubuntu1) ... 338s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 338s Setting up r-cran-cachem (1.0.8-1) ... 338s Setting up build-essential (12.10ubuntu1) ... 338s Setting up r-bioc-iranges (2.36.0-1) ... 338s Setting up r-cran-rjson (0.2.21-1) ... 338s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 338s Setting up r-cran-restfulr (0.0.15-1) ... 338s Setting up r-cran-vctrs (0.6.5-1) ... 338s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 338s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 338s Setting up r-base-dev (4.3.2-1build1) ... 338s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 338s Setting up r-cran-stringr (1.5.1-1) ... 338s Setting up r-bioc-biocparallel (1.36.0-1) ... 338s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 338s Setting up r-cran-xml2 (1.3.6-1) ... 338s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 338s Setting up r-cran-survival (3.5-8-1) ... 338s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 338s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 338s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 338s Setting up r-cran-httr (1.4.7+dfsg-1) ... 338s Setting up r-cran-hms (1.1.3-1) ... 338s Setting up r-cran-memoise (2.0.1-1) ... 338s Setting up r-cran-purrr (1.0.2-1) ... 338s Setting up r-cran-blob (1.2.4-1) ... 338s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 338s Setting up r-bioc-xvector (0.42.0-1) ... 338s Setting up r-cran-dplyr (1.1.4-1) ... 338s Setting up r-cran-rsqlite (2.3.4-1) ... 338s Setting up r-cran-progress (1.2.3-1) ... 338s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 338s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 338s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 338s Setting up r-cran-tidyr (1.3.1-1) ... 338s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 338s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 338s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 338s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 338s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 338s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 338s Setting up r-bioc-annotationdbi (1.64.1-1) ... 338s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 338s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 338s Setting up r-bioc-genefilter (1.84.0-1) ... 338s Setting up r-bioc-genomicalignments (1.38.2-1) ... 338s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 338s Setting up r-bioc-rtracklayer (1.62.0-1) ... 338s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 338s Setting up r-bioc-bsgenome (1.70.2-1) ... 338s Setting up autopkgtest-satdep (0) ... 338s Processing triggers for man-db (2.12.0-3) ... 340s Processing triggers for install-info (7.1-3) ... 340s Processing triggers for libc-bin (2.39-0ubuntu2) ... 352s (Reading database ... 104791 files and directories currently installed.) 352s Removing autopkgtest-satdep (0) ... 353s autopkgtest [13:53:27]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 353s autopkgtest [13:53:27]: test pkg-r-autopkgtest: [----------------------- 354s Test: Try to load the R library rtracklayer 354s 354s R version 4.3.2 (2023-10-31) -- "Eye Holes" 354s Copyright (C) 2023 The R Foundation for Statistical Computing 354s Platform: aarch64-unknown-linux-gnu (64-bit) 354s 354s R is free software and comes with ABSOLUTELY NO WARRANTY. 354s You are welcome to redistribute it under certain conditions. 354s Type 'license()' or 'licence()' for distribution details. 354s 354s R is a collaborative project with many contributors. 354s Type 'contributors()' for more information and 354s 'citation()' on how to cite R or R packages in publications. 354s 354s Type 'demo()' for some demos, 'help()' for on-line help, or 354s 'help.start()' for an HTML browser interface to help. 354s Type 'q()' to quit R. 354s 354s > library('rtracklayer') 354s Loading required package: GenomicRanges 354s Loading required package: stats4 354s Loading required package: BiocGenerics 354s 354s Attaching package: ‘BiocGenerics’ 354s 354s The following objects are masked from ‘package:stats’: 354s 354s IQR, mad, sd, var, xtabs 354s 354s The following objects are masked from ‘package:base’: 354s 354s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 354s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 354s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 354s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 354s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 354s table, tapply, union, unique, unsplit, which.max, which.min 354s 354s Loading required package: S4Vectors 355s 355s Attaching package: ‘S4Vectors’ 355s 355s The following object is masked from ‘package:utils’: 355s 355s findMatches 355s 355s The following objects are masked from ‘package:base’: 355s 355s expand.grid, I, unname 355s 355s Loading required package: IRanges 356s Loading required package: GenomeInfoDb 363s > 363s > 363s Other tests are currently unsupported! 363s They will be progressively added. 364s autopkgtest [13:53:38]: test pkg-r-autopkgtest: -----------------------] 365s autopkgtest [13:53:39]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 365s pkg-r-autopkgtest PASS 365s autopkgtest [13:53:39]: @@@@@@@@@@@@@@@@@@@@ summary 365s pkg-r-autopkgtest PASS 376s Creating nova instance adt-noble-arm64-r-bioc-rtracklayer-20240316-134734-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...