0s autopkgtest [10:09:59]: starting date and time: 2024-03-25 10:09:59+0000 0s autopkgtest [10:09:59]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps 0s autopkgtest [10:09:59]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.4msco8gr/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:curl,src:gnutls28,src:libpsl,src:nettle,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=curl/8.5.0-2ubuntu8 gnutls28/3.8.3-1.1ubuntu2 libpsl/0.21.2-1.1 nettle/3.9.1-2.2 openssl/3.0.13-0ubuntu2 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos01-arm64-18.secgroup --name adt-noble-arm64-r-bioc-rsamtools-20240325-100959-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://us.ports.ubuntu.com/ubuntu-ports/ 108s autopkgtest [10:11:47]: testbed dpkg architecture: arm64 108s autopkgtest [10:11:47]: testbed apt version: 2.7.12 108s autopkgtest [10:11:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 109s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [496 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 110s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3987 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [56.8 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [708 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.7 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4364 kB] 111s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 111s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [71.0 kB] 111s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 117s Fetched 9851 kB in 3s (3311 kB/s) 117s Reading package lists... 121s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s Calculating upgrade... 124s The following packages will be REMOVED: 124s libssl3 124s The following NEW packages will be installed: 124s libssl3t64 124s The following packages have been kept back: 124s curl 124s The following packages will be upgraded: 124s openssl 124s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 124s Need to get 2777 kB of archives. 124s After this operation, 139 kB of additional disk space will be used. 124s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu2 [985 kB] 125s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu2 [1793 kB] 126s Fetched 2777 kB in 1s (3968 kB/s) 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 126s Preparing to unpack .../openssl_3.0.13-0ubuntu2_arm64.deb ... 126s Unpacking openssl (3.0.13-0ubuntu2) over (3.0.10-1ubuntu4) ... 126s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 126s wget depends on libssl3 (>= 3.0.0). 126s u-boot-tools depends on libssl3 (>= 3.0.0). 126s tnftp depends on libssl3 (>= 3.0.0). 126s tcpdump depends on libssl3 (>= 3.0.0). 126s systemd-resolved depends on libssl3 (>= 3.0.0). 126s systemd depends on libssl3 (>= 3.0.0). 126s sudo depends on libssl3 (>= 3.0.0). 126s sbsigntool depends on libssl3 (>= 3.0.0). 126s rsync depends on libssl3 (>= 3.0.0). 126s python3-cryptography depends on libssl3 (>= 3.0.0). 126s openssh-server depends on libssl3 (>= 3.0.10). 126s openssh-client depends on libssl3 (>= 3.0.10). 126s mtd-utils depends on libssl3 (>= 3.0.0). 126s mokutil depends on libssl3 (>= 3.0.0). 126s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 126s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 126s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 126s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 126s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 126s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 126s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 126s libnvme1 depends on libssl3 (>= 3.0.0). 126s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 126s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 126s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 126s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 126s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 126s kmod depends on libssl3 (>= 3.0.0). 126s dhcpcd-base depends on libssl3 (>= 3.0.0). 126s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 126s 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75911 files and directories currently installed.) 126s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 126s Selecting previously unselected package libssl3t64:arm64. 126s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75900 files and directories currently installed.) 126s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu2_arm64.deb ... 126s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu2) ... 126s Setting up libssl3t64:arm64 (3.0.13-0ubuntu2) ... 126s Setting up openssl (3.0.13-0ubuntu2) ... 126s Processing triggers for man-db (2.12.0-3) ... 127s Processing triggers for libc-bin (2.39-0ubuntu6) ... 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 131s sh: Attempting to set up Debian/Ubuntu apt sources automatically 131s sh: Distribution appears to be Ubuntu 133s Reading package lists... 133s Building dependency tree... 133s Reading state information... 134s eatmydata is already the newest version (131-1). 134s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s dbus is already the newest version (1.14.10-4ubuntu1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 136s Reading package lists... 137s Building dependency tree... 137s Reading state information... 138s rng-tools-debian is already the newest version (2.4). 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 140s The following packages will be REMOVED: 140s cloud-init* python3-configobj* python3-debconf* 140s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 140s After this operation, 3256 kB disk space will be freed. 140s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75913 files and directories currently installed.) 141s Removing cloud-init (24.1.2-0ubuntu1) ... 142s Removing python3-configobj (5.0.8-3) ... 142s Removing python3-debconf (1.5.86) ... 142s Processing triggers for man-db (2.12.0-3) ... 143s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75524 files and directories currently installed.) 143s Purging configuration files for cloud-init (24.1.2-0ubuntu1) ... 144s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 144s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 144s invoke-rc.d: policy-rc.d denied execution of try-restart. 145s Reading package lists... 145s Building dependency tree... 145s Reading state information... 147s linux-generic is already the newest version (6.8.0-11.11+1). 147s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 147s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 147s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 147s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 154s Reading package lists... 154s Reading package lists... 155s Building dependency tree... 155s Reading state information... 156s Calculating upgrade... 157s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 157s Reading package lists... 157s Building dependency tree... 157s Reading state information... 159s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 159s autopkgtest [10:12:38]: rebooting testbed after setup commands that affected boot 319s autopkgtest [10:15:18]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 323s autopkgtest [10:15:22]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 325s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (dsc) [2354 B] 325s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (tar) [2463 kB] 325s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (diff) [6804 B] 326s gpgv: Signature made Thu Nov 30 10:32:59 2023 UTC 326s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 326s gpgv: issuer "tillea@rki.de" 326s gpgv: Can't check signature: No public key 326s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1.dsc: no acceptable signature found 326s autopkgtest [10:15:25]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1 328s autopkgtest [10:15:27]: build not needed 336s autopkgtest [10:15:35]: test pkg-r-autopkgtest: preparing testbed 339s Reading package lists... 340s Building dependency tree... 340s Reading state information... 341s Starting pkgProblemResolver with broken count: 0 341s Starting 2 pkgProblemResolver with broken count: 0 341s Done 342s The following additional packages will be installed: 342s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 342s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 342s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 342s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 342s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 342s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 342s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 342s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 342s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 342s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 342s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 342s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 342s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 342s libjs-highlight.js libjs-jquery libjs-jquery-datatables 342s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 342s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 342s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 342s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 342s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 342s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 342s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 342s libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 342s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 342s libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 342s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 342s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 342s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 342s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 342s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 342s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 342s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 342s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 342s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 342s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 342s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 342s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 342s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 342s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 342s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 342s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 342s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 342s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 342s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 342s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 342s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 342s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 342s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 342s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 342s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 342s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 342s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 342s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 342s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 342s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 342s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 342s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 342s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 342s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 342s Suggested packages: 342s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 342s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 342s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 342s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 342s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 342s libboost-context1.83-dev libboost-contract1.83-dev 342s libboost-coroutine1.83-dev libboost-date-time1.83-dev 342s libboost-exception1.83-dev libboost-fiber1.83-dev 342s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 342s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 342s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 342s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 342s libboost-numpy1.83-dev libboost-program-options1.83-dev 342s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 342s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 342s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 342s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 342s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 342s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 342s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 342s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 342s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 342s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 342s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 342s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 342s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 342s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 342s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 342s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 342s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 342s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 342s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 342s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 342s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 342s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 342s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 342s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 342s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 342s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 342s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 342s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 342s Recommended packages: 342s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 342s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 342s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 342s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 342s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 342s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 342s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 342s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 342s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 342s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 342s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 342s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 342s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 342s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 342s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 342s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 342s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 342s The following NEW packages will be installed: 342s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 342s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 342s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 342s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 342s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 342s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 342s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 342s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 342s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 342s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 342s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 342s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 342s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 342s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 342s libjs-highlight.js libjs-jquery libjs-jquery-datatables 342s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 342s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 342s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 342s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 342s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libpango-1.0-0 342s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 342s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 342s libpng-dev libpotrace0 libptexenc1 libreadline-dev libsharpyuv0 libsm6 342s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 342s libthai0 libtiff6 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 342s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 342s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 342s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 342s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 342s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 342s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 342s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 342s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 342s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 342s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 342s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 342s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 342s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 342s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 342s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 342s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 342s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 342s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 342s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 342s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 342s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 342s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 342s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 342s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 342s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 342s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 342s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 342s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 342s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 342s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 342s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 342s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 342s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 342s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 343s 0 upgraded, 283 newly installed, 0 to remove and 0 not upgraded. 343s Need to get 426 MB/426 MB of archives. 343s After this operation, 1352 MB of additional disk space will be used. 343s Get:1 /tmp/autopkgtest.0tFhWv/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 343s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu6 [19.7 kB] 343s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 344s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 344s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 344s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu6 [1596 kB] 344s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 345s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 345s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 346s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 346s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 346s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 346s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 346s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 346s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 346s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 346s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 346s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 347s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 347s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 347s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 348s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 348s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 348s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 348s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 348s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 348s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 348s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 348s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 348s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 348s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 348s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 348s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 348s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 348s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 348s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 348s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 348s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 348s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 348s Get:40 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 348s Get:41 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 349s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 349s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 349s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 349s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 349s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 349s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 349s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 349s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 349s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 349s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 349s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 349s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 349s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 349s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 349s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 350s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 350s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 350s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 350s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 350s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 350s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 350s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 350s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 350s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 350s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 350s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 350s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 350s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 350s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 350s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 350s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 350s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 350s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 350s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 350s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 350s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 350s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 350s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 350s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 350s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 350s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 350s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 350s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 350s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 350s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 350s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 350s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 350s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 350s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 350s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 350s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 350s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 350s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 350s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 350s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 351s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 351s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 351s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 351s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 351s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 351s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 351s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 351s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 351s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 351s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 351s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 351s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 351s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 351s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 351s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 351s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 351s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 351s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 351s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 351s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 351s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 352s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 352s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 352s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 352s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 352s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 352s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 352s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 352s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.14-1 [767 kB] 352s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 352s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 352s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 352s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 352s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 352s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 352s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 352s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 352s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 352s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 354s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 354s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 354s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 354s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 354s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 354s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 354s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 355s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 355s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 355s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 355s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 355s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 355s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 355s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 355s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 355s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 356s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 356s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 356s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 356s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 356s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 356s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 356s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 356s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 356s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 356s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 356s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 356s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 356s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 356s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 356s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 356s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 356s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 356s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 356s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 356s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 356s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 356s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 356s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 356s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 356s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 356s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 356s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 356s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 356s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 356s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 356s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 357s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 357s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 357s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 358s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 358s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 358s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 358s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 358s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 358s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 358s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 358s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 358s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 358s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 358s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 358s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 358s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 358s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 358s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 358s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 358s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 358s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 359s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 359s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 359s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 359s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 359s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 359s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 359s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 359s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 359s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 360s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 360s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 360s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 360s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 360s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 360s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 360s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 360s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 360s Get:221 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 361s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 361s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 361s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 361s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 361s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 362s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 362s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 363s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 363s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 363s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 363s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 363s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 363s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 363s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 363s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 363s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 363s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 363s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 363s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 364s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 364s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 364s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 364s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 364s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 364s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 366s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 369s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 370s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 378s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 378s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 378s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 378s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 378s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 378s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 378s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 378s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 379s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 379s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 379s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 379s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 379s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 379s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 379s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 379s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 379s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 379s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 379s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 380s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 380s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 380s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 380s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 380s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.3+dfsg-1 [1823 kB] 380s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 380s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 380s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 380s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 380s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 380s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 380s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 380s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 380s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 381s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.33-1 [377 kB] 382s Preconfiguring packages ... 382s Fetched 426 MB in 38s (11.2 MB/s) 382s Selecting previously unselected package libc-dev-bin. 383s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75469 files and directories currently installed.) 383s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu6_arm64.deb ... 383s Unpacking libc-dev-bin (2.39-0ubuntu6) ... 383s Selecting previously unselected package linux-libc-dev:arm64. 383s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 383s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 383s Selecting previously unselected package libcrypt-dev:arm64. 383s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 383s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 383s Selecting previously unselected package rpcsvc-proto. 383s Preparing to unpack .../003-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 383s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 383s Selecting previously unselected package libc6-dev:arm64. 383s Preparing to unpack .../004-libc6-dev_2.39-0ubuntu6_arm64.deb ... 383s Unpacking libc6-dev:arm64 (2.39-0ubuntu6) ... 384s Selecting previously unselected package libisl23:arm64. 384s Preparing to unpack .../005-libisl23_0.26-3_arm64.deb ... 384s Unpacking libisl23:arm64 (0.26-3) ... 384s Selecting previously unselected package libmpc3:arm64. 384s Preparing to unpack .../006-libmpc3_1.3.1-1_arm64.deb ... 384s Unpacking libmpc3:arm64 (1.3.1-1) ... 384s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 384s Preparing to unpack .../007-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 384s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 384s Selecting previously unselected package cpp-13. 384s Preparing to unpack .../008-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 384s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 384s Selecting previously unselected package cpp-aarch64-linux-gnu. 384s Preparing to unpack .../009-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 384s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 384s Selecting previously unselected package cpp. 384s Preparing to unpack .../010-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 384s Unpacking cpp (4:13.2.0-7ubuntu1) ... 384s Selecting previously unselected package libcc1-0:arm64. 384s Preparing to unpack .../011-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 384s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 384s Selecting previously unselected package libgomp1:arm64. 384s Preparing to unpack .../012-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 384s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 384s Selecting previously unselected package libitm1:arm64. 384s Preparing to unpack .../013-libitm1_14-20240303-1ubuntu1_arm64.deb ... 384s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libatomic1:arm64. 385s Preparing to unpack .../014-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libasan8:arm64. 385s Preparing to unpack .../015-libasan8_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package liblsan0:arm64. 385s Preparing to unpack .../016-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libtsan2:arm64. 385s Preparing to unpack .../017-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libubsan1:arm64. 385s Preparing to unpack .../018-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libhwasan0:arm64. 385s Preparing to unpack .../019-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 385s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 385s Selecting previously unselected package libgcc-13-dev:arm64. 385s Preparing to unpack .../020-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 385s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 385s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 385s Preparing to unpack .../021-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 386s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 386s Selecting previously unselected package gcc-13. 386s Preparing to unpack .../022-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 386s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 387s Selecting previously unselected package gcc-aarch64-linux-gnu. 387s Preparing to unpack .../023-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 387s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 387s Selecting previously unselected package gcc. 387s Preparing to unpack .../024-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 387s Unpacking gcc (4:13.2.0-7ubuntu1) ... 387s Selecting previously unselected package libstdc++-13-dev:arm64. 387s Preparing to unpack .../025-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 387s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 387s Selecting previously unselected package g++-13-aarch64-linux-gnu. 387s Preparing to unpack .../026-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 387s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 388s Selecting previously unselected package g++-13. 388s Preparing to unpack .../027-g++-13_13.2.0-17ubuntu2_arm64.deb ... 388s Unpacking g++-13 (13.2.0-17ubuntu2) ... 388s Selecting previously unselected package g++-aarch64-linux-gnu. 388s Preparing to unpack .../028-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 388s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 388s Selecting previously unselected package g++. 388s Preparing to unpack .../029-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 388s Unpacking g++ (4:13.2.0-7ubuntu1) ... 388s Selecting previously unselected package build-essential. 388s Preparing to unpack .../030-build-essential_12.10ubuntu1_arm64.deb ... 388s Unpacking build-essential (12.10ubuntu1) ... 388s Selecting previously unselected package dctrl-tools. 388s Preparing to unpack .../031-dctrl-tools_2.24-3build2_arm64.deb ... 388s Unpacking dctrl-tools (2.24-3build2) ... 388s Selecting previously unselected package fonts-dejavu-mono. 388s Preparing to unpack .../032-fonts-dejavu-mono_2.37-8_all.deb ... 388s Unpacking fonts-dejavu-mono (2.37-8) ... 388s Selecting previously unselected package fonts-dejavu-core. 388s Preparing to unpack .../033-fonts-dejavu-core_2.37-8_all.deb ... 388s Unpacking fonts-dejavu-core (2.37-8) ... 388s Selecting previously unselected package fontconfig-config. 388s Preparing to unpack .../034-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 389s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 389s Selecting previously unselected package libfontconfig1:arm64. 389s Preparing to unpack .../035-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 389s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 389s Selecting previously unselected package fontconfig. 389s Preparing to unpack .../036-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 389s Unpacking fontconfig (2.15.0-1ubuntu1) ... 389s Selecting previously unselected package fonts-font-awesome. 389s Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 389s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 389s Selecting previously unselected package fonts-glyphicons-halflings. 389s Preparing to unpack .../038-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 389s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 389s Selecting previously unselected package fonts-lmodern. 389s Preparing to unpack .../039-fonts-lmodern_2.005-1_all.deb ... 389s Unpacking fonts-lmodern (2.005-1) ... 389s Selecting previously unselected package fonts-mathjax. 389s Preparing to unpack .../040-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 389s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 390s Selecting previously unselected package libgfortran5:arm64. 390s Preparing to unpack .../041-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 390s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 390s Selecting previously unselected package libgfortran-13-dev:arm64. 390s Preparing to unpack .../042-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 390s Preparing to unpack .../043-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package gfortran-13. 390s Preparing to unpack .../044-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 390s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 390s Selecting previously unselected package gfortran-aarch64-linux-gnu. 390s Preparing to unpack .../045-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 390s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 390s Selecting previously unselected package gfortran. 390s Preparing to unpack .../046-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 390s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 390s Selecting previously unselected package icu-devtools. 390s Preparing to unpack .../047-icu-devtools_74.2-1ubuntu1_arm64.deb ... 390s Unpacking icu-devtools (74.2-1ubuntu1) ... 391s Selecting previously unselected package javascript-common. 391s Preparing to unpack .../048-javascript-common_11+nmu1_all.deb ... 391s Unpacking javascript-common (11+nmu1) ... 391s Selecting previously unselected package libio-string-perl. 391s Preparing to unpack .../049-libio-string-perl_1.08-4_all.deb ... 391s Unpacking libio-string-perl (1.08-4) ... 391s Selecting previously unselected package liblatex-tounicode-perl. 391s Preparing to unpack .../050-liblatex-tounicode-perl_0.54-2_all.deb ... 391s Unpacking liblatex-tounicode-perl (0.54-2) ... 391s Selecting previously unselected package libbibtex-parser-perl. 391s Preparing to unpack .../051-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 391s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 391s Selecting previously unselected package libblas3:arm64. 391s Preparing to unpack .../052-libblas3_3.12.0-3_arm64.deb ... 391s Unpacking libblas3:arm64 (3.12.0-3) ... 391s Selecting previously unselected package libblas-dev:arm64. 391s Preparing to unpack .../053-libblas-dev_3.12.0-3_arm64.deb ... 391s Unpacking libblas-dev:arm64 (3.12.0-3) ... 391s Selecting previously unselected package libboost1.83-dev:arm64. 391s Preparing to unpack .../054-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 391s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 397s Selecting previously unselected package libboost-dev:arm64. 397s Preparing to unpack .../055-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 397s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 397s Selecting previously unselected package libbz2-dev:arm64. 398s Preparing to unpack .../056-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 398s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 398s Selecting previously unselected package libpixman-1-0:arm64. 398s Preparing to unpack .../057-libpixman-1-0_0.42.2-1_arm64.deb ... 398s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 398s Selecting previously unselected package libxcb-render0:arm64. 398s Preparing to unpack .../058-libxcb-render0_1.15-1_arm64.deb ... 398s Unpacking libxcb-render0:arm64 (1.15-1) ... 398s Selecting previously unselected package libxcb-shm0:arm64. 398s Preparing to unpack .../059-libxcb-shm0_1.15-1_arm64.deb ... 398s Unpacking libxcb-shm0:arm64 (1.15-1) ... 398s Selecting previously unselected package libxrender1:arm64. 398s Preparing to unpack .../060-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 398s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 398s Selecting previously unselected package libcairo2:arm64. 398s Preparing to unpack .../061-libcairo2_1.18.0-1_arm64.deb ... 398s Unpacking libcairo2:arm64 (1.18.0-1) ... 398s Selecting previously unselected package libdatrie1:arm64. 398s Preparing to unpack .../062-libdatrie1_0.2.13-3_arm64.deb ... 398s Unpacking libdatrie1:arm64 (0.2.13-3) ... 398s Selecting previously unselected package libdeflate0:arm64. 398s Preparing to unpack .../063-libdeflate0_1.19-1_arm64.deb ... 398s Unpacking libdeflate0:arm64 (1.19-1) ... 398s Selecting previously unselected package libgraphite2-3:arm64. 398s Preparing to unpack .../064-libgraphite2-3_1.3.14-2_arm64.deb ... 398s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 398s Selecting previously unselected package libharfbuzz0b:arm64. 398s Preparing to unpack .../065-libharfbuzz0b_8.3.0-2_arm64.deb ... 398s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 398s Selecting previously unselected package x11-common. 398s Preparing to unpack .../066-x11-common_1%3a7.7+23ubuntu2_all.deb ... 398s Unpacking x11-common (1:7.7+23ubuntu2) ... 398s Selecting previously unselected package libice6:arm64. 398s Preparing to unpack .../067-libice6_2%3a1.0.10-1build2_arm64.deb ... 398s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 398s Selecting previously unselected package libicu-dev:arm64. 398s Preparing to unpack .../068-libicu-dev_74.2-1ubuntu1_arm64.deb ... 398s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 399s Selecting previously unselected package libjpeg-turbo8:arm64. 399s Preparing to unpack .../069-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 399s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 399s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 399s Preparing to unpack .../070-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 399s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 400s Selecting previously unselected package libjpeg8:arm64. 400s Preparing to unpack .../071-libjpeg8_8c-2ubuntu11_arm64.deb ... 400s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 400s Selecting previously unselected package libjpeg8-dev:arm64. 400s Preparing to unpack .../072-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 400s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 400s Selecting previously unselected package libjpeg-dev:arm64. 400s Preparing to unpack .../073-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 400s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 400s Selecting previously unselected package libjs-bootstrap. 400s Preparing to unpack .../074-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 400s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 400s Selecting previously unselected package libjs-popper.js. 400s Preparing to unpack .../075-libjs-popper.js_1.16.1+ds-6_all.deb ... 400s Unpacking libjs-popper.js (1.16.1+ds-6) ... 400s Selecting previously unselected package libjs-bootstrap4. 400s Preparing to unpack .../076-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 400s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 400s Selecting previously unselected package libjs-d3. 400s Preparing to unpack .../077-libjs-d3_3.5.17-4_all.deb ... 400s Unpacking libjs-d3 (3.5.17-4) ... 400s Selecting previously unselected package libjs-es5-shim. 400s Preparing to unpack .../078-libjs-es5-shim_4.6.7-2_all.deb ... 400s Unpacking libjs-es5-shim (4.6.7-2) ... 400s Selecting previously unselected package libjs-highlight.js. 401s Preparing to unpack .../079-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 401s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 401s Selecting previously unselected package libjs-jquery. 401s Preparing to unpack .../080-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 401s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 401s Selecting previously unselected package libjs-jquery-datatables. 401s Preparing to unpack .../081-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 401s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 401s Selecting previously unselected package libjs-sifter.js. 401s Preparing to unpack .../082-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 401s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 401s Selecting previously unselected package libjs-microplugin.js. 401s Preparing to unpack .../083-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 401s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 401s Selecting previously unselected package libjs-jquery-selectize.js. 401s Preparing to unpack .../084-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 401s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 401s Selecting previously unselected package libjs-jquery-ui. 401s Preparing to unpack .../085-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 401s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 401s Selecting previously unselected package libjs-json. 401s Preparing to unpack .../086-libjs-json_0~20221030+~1.0.8-1_all.deb ... 401s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 401s Selecting previously unselected package libjs-lunr. 401s Preparing to unpack .../087-libjs-lunr_2.3.9~dfsg-2_all.deb ... 401s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 401s Selecting previously unselected package libjs-prettify. 401s Preparing to unpack .../088-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 401s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 401s Selecting previously unselected package libkpathsea6:arm64. 401s Preparing to unpack .../089-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 401s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 402s Selecting previously unselected package liblapack3:arm64. 402s Preparing to unpack .../090-liblapack3_3.12.0-3_arm64.deb ... 402s Unpacking liblapack3:arm64 (3.12.0-3) ... 402s Selecting previously unselected package liblapack-dev:arm64. 402s Preparing to unpack .../091-liblapack-dev_3.12.0-3_arm64.deb ... 402s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 402s Selecting previously unselected package liblerc4:arm64. 402s Preparing to unpack .../092-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 402s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 402s Selecting previously unselected package liblua5.4-0:arm64. 402s Preparing to unpack .../093-liblua5.4-0_5.4.6-3_arm64.deb ... 402s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 402s Selecting previously unselected package libncurses-dev:arm64. 402s Preparing to unpack .../094-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 402s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 402s Selecting previously unselected package libthai-data. 402s Preparing to unpack .../095-libthai-data_0.1.29-2_all.deb ... 402s Unpacking libthai-data (0.1.29-2) ... 402s Selecting previously unselected package libthai0:arm64. 402s Preparing to unpack .../096-libthai0_0.1.29-2_arm64.deb ... 402s Unpacking libthai0:arm64 (0.1.29-2) ... 403s Selecting previously unselected package libpango-1.0-0:arm64. 403s Preparing to unpack .../097-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 403s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 403s Selecting previously unselected package libpangoft2-1.0-0:arm64. 403s Preparing to unpack .../098-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 403s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 403s Selecting previously unselected package libpangocairo-1.0-0:arm64. 403s Preparing to unpack .../099-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 403s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 403s Selecting previously unselected package libpaper1:arm64. 403s Preparing to unpack .../100-libpaper1_1.1.29_arm64.deb ... 403s Unpacking libpaper1:arm64 (1.1.29) ... 403s Selecting previously unselected package libpaper-utils. 403s Preparing to unpack .../101-libpaper-utils_1.1.29_arm64.deb ... 403s Unpacking libpaper-utils (1.1.29) ... 403s Selecting previously unselected package libpcre2-16-0:arm64. 403s Preparing to unpack .../102-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 403s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 403s Selecting previously unselected package libpcre2-32-0:arm64. 403s Preparing to unpack .../103-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 403s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 403s Selecting previously unselected package libpcre2-posix3:arm64. 403s Preparing to unpack .../104-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 403s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 403s Selecting previously unselected package libpcre2-dev:arm64. 403s Preparing to unpack .../105-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 403s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 403s Selecting previously unselected package libpkgconf3:arm64. 403s Preparing to unpack .../106-libpkgconf3_1.8.1-2_arm64.deb ... 403s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 403s Selecting previously unselected package zlib1g-dev:arm64. 403s Preparing to unpack .../107-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 403s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 403s Selecting previously unselected package libpng-dev:arm64. 403s Preparing to unpack .../108-libpng-dev_1.6.43-1_arm64.deb ... 403s Unpacking libpng-dev:arm64 (1.6.43-1) ... 403s Selecting previously unselected package libpotrace0:arm64. 403s Preparing to unpack .../109-libpotrace0_1.16-2_arm64.deb ... 403s Unpacking libpotrace0:arm64 (1.16-2) ... 403s Selecting previously unselected package libptexenc1:arm64. 404s Preparing to unpack .../110-libptexenc1_2023.20230311.66589-9_arm64.deb ... 404s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 404s Selecting previously unselected package libreadline-dev:arm64. 404s Preparing to unpack .../111-libreadline-dev_8.2-3_arm64.deb ... 404s Unpacking libreadline-dev:arm64 (8.2-3) ... 404s Selecting previously unselected package libsharpyuv0:arm64. 404s Preparing to unpack .../112-libsharpyuv0_1.3.2-0.4_arm64.deb ... 404s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 404s Selecting previously unselected package libsm6:arm64. 404s Preparing to unpack .../113-libsm6_2%3a1.2.3-1build2_arm64.deb ... 404s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 404s Selecting previously unselected package libsynctex2:arm64. 404s Preparing to unpack .../114-libsynctex2_2023.20230311.66589-9_arm64.deb ... 404s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 404s Selecting previously unselected package libtcl8.6:arm64. 404s Preparing to unpack .../115-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 404s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 404s Selecting previously unselected package libteckit0:arm64. 404s Preparing to unpack .../116-libteckit0_2.5.12+ds1-1_arm64.deb ... 404s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 404s Selecting previously unselected package libtexlua53-5:arm64. 404s Preparing to unpack .../117-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 404s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 404s Selecting previously unselected package libjbig0:arm64. 404s Preparing to unpack .../118-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 404s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 404s Selecting previously unselected package libwebp7:arm64. 404s Preparing to unpack .../119-libwebp7_1.3.2-0.4_arm64.deb ... 404s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 404s Selecting previously unselected package libtiff6:arm64. 404s Preparing to unpack .../120-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 404s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 404s Selecting previously unselected package libxft2:arm64. 404s Preparing to unpack .../121-libxft2_2.3.6-1_arm64.deb ... 404s Unpacking libxft2:arm64 (2.3.6-1) ... 405s Selecting previously unselected package libxss1:arm64. 405s Preparing to unpack .../122-libxss1_1%3a1.2.3-1build2_arm64.deb ... 405s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 405s Selecting previously unselected package libtk8.6:arm64. 405s Preparing to unpack .../123-libtk8.6_8.6.14-1_arm64.deb ... 405s Unpacking libtk8.6:arm64 (8.6.14-1) ... 405s Selecting previously unselected package libxt6:arm64. 405s Preparing to unpack .../124-libxt6_1%3a1.2.1-1.1_arm64.deb ... 405s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 405s Selecting previously unselected package libxmu6:arm64. 405s Preparing to unpack .../125-libxmu6_2%3a1.1.3-3_arm64.deb ... 405s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 405s Selecting previously unselected package libxpm4:arm64. 405s Preparing to unpack .../126-libxpm4_1%3a3.5.17-1_arm64.deb ... 405s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 405s Selecting previously unselected package libxaw7:arm64. 405s Preparing to unpack .../127-libxaw7_2%3a1.0.14-1_arm64.deb ... 405s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 405s Selecting previously unselected package libxi6:arm64. 405s Preparing to unpack .../128-libxi6_2%3a1.8.1-1_arm64.deb ... 405s Unpacking libxi6:arm64 (2:1.8.1-1) ... 405s Selecting previously unselected package libzzip-0-13:arm64. 405s Preparing to unpack .../129-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 405s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 405s Selecting previously unselected package zip. 405s Preparing to unpack .../130-zip_3.0-13_arm64.deb ... 405s Unpacking zip (3.0-13) ... 405s Selecting previously unselected package unzip. 405s Preparing to unpack .../131-unzip_6.0-28ubuntu3_arm64.deb ... 405s Unpacking unzip (6.0-28ubuntu3) ... 405s Selecting previously unselected package xdg-utils. 405s Preparing to unpack .../132-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 405s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 405s Selecting previously unselected package r-base-core. 405s Preparing to unpack .../133-r-base-core_4.3.2-1build1_arm64.deb ... 405s Unpacking r-base-core (4.3.2-1build1) ... 406s Selecting previously unselected package r-cran-littler. 406s Preparing to unpack .../134-r-cran-littler_0.3.19-1_arm64.deb ... 406s Unpacking r-cran-littler (0.3.19-1) ... 407s Selecting previously unselected package littler. 407s Preparing to unpack .../135-littler_0.3.19-1_all.deb ... 407s Unpacking littler (0.3.19-1) ... 407s Selecting previously unselected package node-bootstrap-sass. 407s Preparing to unpack .../136-node-bootstrap-sass_3.4.3-2_all.deb ... 407s Unpacking node-bootstrap-sass (3.4.3-2) ... 407s Selecting previously unselected package node-html5shiv. 407s Preparing to unpack .../137-node-html5shiv_3.7.3+dfsg-5_all.deb ... 407s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 407s Selecting previously unselected package node-normalize.css. 407s Preparing to unpack .../138-node-normalize.css_8.0.1-5_all.deb ... 407s Unpacking node-normalize.css (8.0.1-5) ... 407s Selecting previously unselected package pandoc-data. 407s Preparing to unpack .../139-pandoc-data_3.1.3-1_all.deb ... 407s Unpacking pandoc-data (3.1.3-1) ... 407s Selecting previously unselected package pandoc. 407s Preparing to unpack .../140-pandoc_3.1.3+ds-2_arm64.deb ... 407s Unpacking pandoc (3.1.3+ds-2) ... 409s Selecting previously unselected package pkgconf-bin. 409s Preparing to unpack .../141-pkgconf-bin_1.8.1-2_arm64.deb ... 409s Unpacking pkgconf-bin (1.8.1-2) ... 409s Selecting previously unselected package pkgconf:arm64. 409s Preparing to unpack .../142-pkgconf_1.8.1-2_arm64.deb ... 409s Unpacking pkgconf:arm64 (1.8.1-2) ... 409s Selecting previously unselected package pkg-config:arm64. 409s Preparing to unpack .../143-pkg-config_1.8.1-2_arm64.deb ... 409s Unpacking pkg-config:arm64 (1.8.1-2) ... 410s Selecting previously unselected package liblzma-dev:arm64. 410s Preparing to unpack .../144-liblzma-dev_5.4.5-0.3_arm64.deb ... 410s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 410s Selecting previously unselected package r-base-dev. 410s Preparing to unpack .../145-r-base-dev_4.3.2-1build1_all.deb ... 410s Unpacking r-base-dev (4.3.2-1build1) ... 410s Selecting previously unselected package pkg-r-autopkgtest. 410s Preparing to unpack .../146-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 410s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 410s Selecting previously unselected package r-bioc-biocgenerics. 410s Preparing to unpack .../147-r-bioc-biocgenerics_0.48.1-2_all.deb ... 410s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 410s Selecting previously unselected package r-bioc-biobase. 410s Preparing to unpack .../148-r-bioc-biobase_2.62.0-1_arm64.deb ... 410s Unpacking r-bioc-biobase (2.62.0-1) ... 410s Selecting previously unselected package r-bioc-s4vectors. 410s Preparing to unpack .../149-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 410s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 410s Selecting previously unselected package r-bioc-iranges. 410s Preparing to unpack .../150-r-bioc-iranges_2.36.0-1_arm64.deb ... 410s Unpacking r-bioc-iranges (2.36.0-1) ... 410s Selecting previously unselected package r-cran-dbi. 410s Preparing to unpack .../151-r-cran-dbi_1.2.2-1_all.deb ... 410s Unpacking r-cran-dbi (1.2.2-1) ... 410s Selecting previously unselected package r-cran-bit. 410s Preparing to unpack .../152-r-cran-bit_4.0.5-1_arm64.deb ... 410s Unpacking r-cran-bit (4.0.5-1) ... 410s Selecting previously unselected package r-cran-bit64. 410s Preparing to unpack .../153-r-cran-bit64_4.0.5-1_arm64.deb ... 410s Unpacking r-cran-bit64 (4.0.5-1) ... 411s Selecting previously unselected package r-cran-rlang. 411s Preparing to unpack .../154-r-cran-rlang_1.1.3-1_arm64.deb ... 411s Unpacking r-cran-rlang (1.1.3-1) ... 411s Selecting previously unselected package r-cran-cli. 411s Preparing to unpack .../155-r-cran-cli_3.6.2-1_arm64.deb ... 411s Unpacking r-cran-cli (3.6.2-1) ... 411s Selecting previously unselected package r-cran-glue. 411s Preparing to unpack .../156-r-cran-glue_1.7.0-1_arm64.deb ... 411s Unpacking r-cran-glue (1.7.0-1) ... 411s Selecting previously unselected package r-cran-lifecycle. 411s Preparing to unpack .../157-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 411s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 411s Selecting previously unselected package r-cran-vctrs. 411s Preparing to unpack .../158-r-cran-vctrs_0.6.5-1_arm64.deb ... 411s Unpacking r-cran-vctrs (0.6.5-1) ... 411s Selecting previously unselected package r-cran-blob. 411s Preparing to unpack .../159-r-cran-blob_1.2.4-1_all.deb ... 411s Unpacking r-cran-blob (1.2.4-1) ... 411s Selecting previously unselected package r-cran-fastmap. 411s Preparing to unpack .../160-r-cran-fastmap_1.1.1-1_arm64.deb ... 411s Unpacking r-cran-fastmap (1.1.1-1) ... 411s Selecting previously unselected package r-cran-cachem. 411s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_arm64.deb ... 411s Unpacking r-cran-cachem (1.0.8-1) ... 411s Selecting previously unselected package r-cran-memoise. 412s Preparing to unpack .../162-r-cran-memoise_2.0.1-1_all.deb ... 412s Unpacking r-cran-memoise (2.0.1-1) ... 412s Selecting previously unselected package r-cran-pkgconfig. 412s Preparing to unpack .../163-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 412s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 412s Selecting previously unselected package r-cran-plogr. 412s Preparing to unpack .../164-r-cran-plogr_0.2.0-3build1_all.deb ... 412s Unpacking r-cran-plogr (0.2.0-3build1) ... 412s Selecting previously unselected package r-cran-cpp11. 412s Preparing to unpack .../165-r-cran-cpp11_0.4.7-1_all.deb ... 412s Unpacking r-cran-cpp11 (0.4.7-1) ... 412s Selecting previously unselected package r-cran-rsqlite. 412s Preparing to unpack .../166-r-cran-rsqlite_2.3.4-1_arm64.deb ... 412s Unpacking r-cran-rsqlite (2.3.4-1) ... 412s Selecting previously unselected package r-cran-curl. 412s Preparing to unpack .../167-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 412s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 412s Selecting previously unselected package r-cran-jsonlite. 412s Preparing to unpack .../168-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 412s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 412s Selecting previously unselected package r-cran-mime. 412s Preparing to unpack .../169-r-cran-mime_0.12-1_arm64.deb ... 412s Unpacking r-cran-mime (0.12-1) ... 412s Selecting previously unselected package r-cran-sys. 412s Preparing to unpack .../170-r-cran-sys_3.4.2-1_arm64.deb ... 412s Unpacking r-cran-sys (3.4.2-1) ... 412s Selecting previously unselected package r-cran-askpass. 412s Preparing to unpack .../171-r-cran-askpass_1.2.0-1_arm64.deb ... 412s Unpacking r-cran-askpass (1.2.0-1) ... 412s Selecting previously unselected package r-cran-openssl. 412s Preparing to unpack .../172-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 412s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 412s Selecting previously unselected package r-cran-r6. 413s Preparing to unpack .../173-r-cran-r6_2.5.1-1_all.deb ... 413s Unpacking r-cran-r6 (2.5.1-1) ... 413s Selecting previously unselected package r-cran-httr. 413s Preparing to unpack .../174-r-cran-httr_1.4.7+dfsg-1_all.deb ... 413s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 413s Selecting previously unselected package r-cran-png. 413s Preparing to unpack .../175-r-cran-png_0.1-8-1_arm64.deb ... 413s Unpacking r-cran-png (0.1-8-1) ... 413s Selecting previously unselected package r-bioc-zlibbioc. 413s Preparing to unpack .../176-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 413s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 413s Selecting previously unselected package r-bioc-xvector. 413s Preparing to unpack .../177-r-bioc-xvector_0.42.0-1_arm64.deb ... 413s Unpacking r-bioc-xvector (0.42.0-1) ... 413s Selecting previously unselected package r-cran-bitops. 413s Preparing to unpack .../178-r-cran-bitops_1.0-7-1_arm64.deb ... 413s Unpacking r-cran-bitops (1.0-7-1) ... 413s Selecting previously unselected package r-cran-rcurl. 413s Preparing to unpack .../179-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 413s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 413s Selecting previously unselected package r-bioc-genomeinfodbdata. 413s Preparing to unpack .../180-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 413s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 413s Selecting previously unselected package r-bioc-genomeinfodb. 413s Preparing to unpack .../181-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 413s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 414s Selecting previously unselected package r-cran-crayon. 414s Preparing to unpack .../182-r-cran-crayon_1.5.2-1_all.deb ... 414s Unpacking r-cran-crayon (1.5.2-1) ... 414s Selecting previously unselected package r-bioc-biostrings. 414s Preparing to unpack .../183-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 414s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 414s Selecting previously unselected package r-bioc-keggrest. 414s Preparing to unpack .../184-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 414s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 414s Selecting previously unselected package r-bioc-annotationdbi. 414s Preparing to unpack .../185-r-bioc-annotationdbi_1.64.1-1_all.deb ... 414s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 414s Selecting previously unselected package r-cran-generics. 414s Preparing to unpack .../186-r-cran-generics_0.1.3-1_all.deb ... 414s Unpacking r-cran-generics (0.1.3-1) ... 414s Selecting previously unselected package r-cran-magrittr. 414s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_arm64.deb ... 414s Unpacking r-cran-magrittr (2.0.3-1) ... 414s Selecting previously unselected package r-cran-fansi. 415s Preparing to unpack .../188-r-cran-fansi_1.0.5-1_arm64.deb ... 415s Unpacking r-cran-fansi (1.0.5-1) ... 415s Selecting previously unselected package r-cran-utf8. 415s Preparing to unpack .../189-r-cran-utf8_1.2.4-1_arm64.deb ... 415s Unpacking r-cran-utf8 (1.2.4-1) ... 415s Selecting previously unselected package r-cran-pillar. 415s Preparing to unpack .../190-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 415s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 415s Selecting previously unselected package r-cran-tibble. 415s Preparing to unpack .../191-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 415s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 415s Selecting previously unselected package r-cran-withr. 415s Preparing to unpack .../192-r-cran-withr_2.5.0-1_all.deb ... 415s Unpacking r-cran-withr (2.5.0-1) ... 415s Selecting previously unselected package r-cran-tidyselect. 415s Preparing to unpack .../193-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 415s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 415s Selecting previously unselected package r-cran-dplyr. 415s Preparing to unpack .../194-r-cran-dplyr_1.1.4-1_arm64.deb ... 415s Unpacking r-cran-dplyr (1.1.4-1) ... 415s Selecting previously unselected package r-cran-purrr. 415s Preparing to unpack .../195-r-cran-purrr_1.0.2-1_arm64.deb ... 415s Unpacking r-cran-purrr (1.0.2-1) ... 415s Selecting previously unselected package r-cran-stringi. 415s Preparing to unpack .../196-r-cran-stringi_1.8.3-1_arm64.deb ... 415s Unpacking r-cran-stringi (1.8.3-1) ... 415s Selecting previously unselected package r-cran-stringr. 416s Preparing to unpack .../197-r-cran-stringr_1.5.1-1_all.deb ... 416s Unpacking r-cran-stringr (1.5.1-1) ... 416s Selecting previously unselected package r-cran-tidyr. 416s Preparing to unpack .../198-r-cran-tidyr_1.3.1-1_arm64.deb ... 416s Unpacking r-cran-tidyr (1.3.1-1) ... 416s Selecting previously unselected package r-cran-dbplyr. 416s Preparing to unpack .../199-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 416s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 416s Selecting previously unselected package r-cran-filelock. 416s Preparing to unpack .../200-r-cran-filelock_1.0.3-1_arm64.deb ... 416s Unpacking r-cran-filelock (1.0.3-1) ... 416s Selecting previously unselected package r-bioc-biocfilecache. 416s Preparing to unpack .../201-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 416s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 416s Selecting previously unselected package r-bioc-biocio. 416s Preparing to unpack .../202-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 416s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 416s Selecting previously unselected package r-cran-formatr. 416s Preparing to unpack .../203-r-cran-formatr_1.14-1_all.deb ... 416s Unpacking r-cran-formatr (1.14-1) ... 416s Selecting previously unselected package r-cran-lambda.r. 416s Preparing to unpack .../204-r-cran-lambda.r_1.2.4-2build1_all.deb ... 416s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 416s Selecting previously unselected package r-cran-futile.options. 416s Preparing to unpack .../205-r-cran-futile.options_1.0.1-3build1_all.deb ... 416s Unpacking r-cran-futile.options (1.0.1-3build1) ... 416s Selecting previously unselected package r-cran-futile.logger. 416s Preparing to unpack .../206-r-cran-futile.logger_1.4.3-4build1_all.deb ... 416s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 416s Selecting previously unselected package r-cran-snow. 416s Preparing to unpack .../207-r-cran-snow_1%3a0.4.4-2_all.deb ... 416s Unpacking r-cran-snow (1:0.4.4-2) ... 417s Selecting previously unselected package r-cran-codetools. 417s Preparing to unpack .../208-r-cran-codetools_0.2-19-1_all.deb ... 417s Unpacking r-cran-codetools (0.2-19-1) ... 417s Selecting previously unselected package r-cran-bh. 417s Preparing to unpack .../209-r-cran-bh_1.84.0-1_all.deb ... 417s Unpacking r-cran-bh (1.84.0-1) ... 417s Selecting previously unselected package r-bioc-biocparallel. 417s Preparing to unpack .../210-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 417s Unpacking r-bioc-biocparallel (1.36.0-1) ... 417s Selecting previously unselected package r-cran-base64enc. 417s Preparing to unpack .../211-r-cran-base64enc_0.1-3-3_arm64.deb ... 417s Unpacking r-cran-base64enc (0.1-3-3) ... 417s Selecting previously unselected package r-cran-digest. 417s Preparing to unpack .../212-r-cran-digest_0.6.34-1_arm64.deb ... 417s Unpacking r-cran-digest (0.6.34-1) ... 417s Selecting previously unselected package r-cran-ellipsis. 417s Preparing to unpack .../213-r-cran-ellipsis_0.3.2-2_arm64.deb ... 417s Unpacking r-cran-ellipsis (0.3.2-2) ... 417s Selecting previously unselected package r-cran-htmltools. 417s Preparing to unpack .../214-r-cran-htmltools_0.5.7-1_arm64.deb ... 417s Unpacking r-cran-htmltools (0.5.7-1) ... 417s Selecting previously unselected package r-cran-evaluate. 417s Preparing to unpack .../215-r-cran-evaluate_0.23-1_all.deb ... 417s Unpacking r-cran-evaluate (0.23-1) ... 417s Selecting previously unselected package r-cran-xfun. 417s Preparing to unpack .../216-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 417s Unpacking r-cran-xfun (0.41+dfsg-1) ... 417s Selecting previously unselected package r-cran-highr. 417s Preparing to unpack .../217-r-cran-highr_0.10+dfsg-1_all.deb ... 417s Unpacking r-cran-highr (0.10+dfsg-1) ... 417s Selecting previously unselected package r-cran-yaml. 417s Preparing to unpack .../218-r-cran-yaml_2.3.8-1_arm64.deb ... 417s Unpacking r-cran-yaml (2.3.8-1) ... 418s Selecting previously unselected package libjs-mathjax. 418s Preparing to unpack .../219-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 418s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 420s Selecting previously unselected package r-cran-knitr. 420s Preparing to unpack .../220-r-cran-knitr_1.45+dfsg-1_all.deb ... 420s Unpacking r-cran-knitr (1.45+dfsg-1) ... 420s Selecting previously unselected package r-cran-jquerylib. 420s Preparing to unpack .../221-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 420s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 420s Selecting previously unselected package r-cran-fs. 420s Preparing to unpack .../222-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 420s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 420s Selecting previously unselected package r-cran-rappdirs. 420s Preparing to unpack .../223-r-cran-rappdirs_0.3.3-1_arm64.deb ... 420s Unpacking r-cran-rappdirs (0.3.3-1) ... 420s Selecting previously unselected package r-cran-sass. 421s Preparing to unpack .../224-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 421s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 421s Selecting previously unselected package r-cran-bslib. 421s Preparing to unpack .../225-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 421s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 421s Selecting previously unselected package r-cran-fontawesome. 421s Preparing to unpack .../226-r-cran-fontawesome_0.5.2-1_all.deb ... 421s Unpacking r-cran-fontawesome (0.5.2-1) ... 421s Selecting previously unselected package r-cran-tinytex. 421s Preparing to unpack .../227-r-cran-tinytex_0.49-1_all.deb ... 421s Unpacking r-cran-tinytex (0.49-1) ... 421s Selecting previously unselected package libjs-modernizr. 421s Preparing to unpack .../228-libjs-modernizr_2.6.2+ds1-5_all.deb ... 421s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 421s Selecting previously unselected package r-cran-pkgkitten. 421s Preparing to unpack .../229-r-cran-pkgkitten_0.2.3-1_all.deb ... 421s Unpacking r-cran-pkgkitten (0.2.3-1) ... 421s Selecting previously unselected package r-cran-rcpp. 421s Preparing to unpack .../230-r-cran-rcpp_1.0.12-1_arm64.deb ... 421s Unpacking r-cran-rcpp (1.0.12-1) ... 422s Selecting previously unselected package r-cran-later. 422s Preparing to unpack .../231-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 422s Unpacking r-cran-later (1.3.2+dfsg-1) ... 422s Selecting previously unselected package r-cran-promises. 422s Preparing to unpack .../232-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 422s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 422s Selecting previously unselected package r-cran-httpuv. 422s Preparing to unpack .../233-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 422s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 422s Selecting previously unselected package r-cran-xtable. 422s Preparing to unpack .../234-r-cran-xtable_1%3a1.8-4-2_all.deb ... 422s Unpacking r-cran-xtable (1:1.8-4-2) ... 422s Selecting previously unselected package r-cran-sourcetools. 422s Preparing to unpack .../235-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 422s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 422s Selecting previously unselected package r-cran-commonmark. 422s Preparing to unpack .../236-r-cran-commonmark_1.9.1-1_arm64.deb ... 422s Unpacking r-cran-commonmark (1.9.1-1) ... 422s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 422s Preparing to unpack .../237-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 422s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 423s Selecting previously unselected package r-cran-shiny. 423s Preparing to unpack .../238-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 423s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 423s Selecting previously unselected package r-cran-rmarkdown. 423s Preparing to unpack .../239-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 423s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 423s Selecting previously unselected package r-cran-bookdown. 423s Preparing to unpack .../240-r-cran-bookdown_0.37+dfsg-1_all.deb ... 423s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 423s Selecting previously unselected package r-cran-biocmanager. 423s Preparing to unpack .../241-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 423s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 424s Selecting previously unselected package tex-common. 424s Preparing to unpack .../242-tex-common_6.18_all.deb ... 424s Unpacking tex-common (6.18) ... 424s Selecting previously unselected package t1utils. 424s Preparing to unpack .../243-t1utils_1.41-4build2_arm64.deb ... 424s Unpacking t1utils (1.41-4build2) ... 424s Selecting previously unselected package texlive-binaries. 424s Preparing to unpack .../244-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 424s Unpacking texlive-binaries (2023.20230311.66589-9) ... 424s Selecting previously unselected package texlive-base. 424s Preparing to unpack .../245-texlive-base_2023.20240207-1_all.deb ... 424s Unpacking texlive-base (2023.20240207-1) ... 427s Selecting previously unselected package texlive-latex-base. 427s Preparing to unpack .../246-texlive-latex-base_2023.20240207-1_all.deb ... 427s Unpacking texlive-latex-base (2023.20240207-1) ... 428s Selecting previously unselected package texlive-bibtex-extra. 428s Preparing to unpack .../247-texlive-bibtex-extra_2023.20240207-1_all.deb ... 428s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 437s Selecting previously unselected package r-bioc-biocstyle. 437s Preparing to unpack .../248-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 437s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 437s Selecting previously unselected package r-cran-xml. 437s Preparing to unpack .../249-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 437s Unpacking r-cran-xml (3.99-0.16.1-1) ... 437s Selecting previously unselected package r-cran-hms. 437s Preparing to unpack .../250-r-cran-hms_1.1.3-1_all.deb ... 437s Unpacking r-cran-hms (1.1.3-1) ... 437s Selecting previously unselected package r-cran-prettyunits. 437s Preparing to unpack .../251-r-cran-prettyunits_1.2.0-1_all.deb ... 437s Unpacking r-cran-prettyunits (1.2.0-1) ... 437s Selecting previously unselected package r-cran-progress. 437s Preparing to unpack .../252-r-cran-progress_1.2.3-1_all.deb ... 437s Unpacking r-cran-progress (1.2.3-1) ... 437s Selecting previously unselected package r-cran-xml2. 437s Preparing to unpack .../253-r-cran-xml2_1.3.6-1_arm64.deb ... 437s Unpacking r-cran-xml2 (1.3.6-1) ... 438s Selecting previously unselected package r-bioc-biomart. 438s Preparing to unpack .../254-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 438s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 438s Selecting previously unselected package r-cran-lattice. 438s Preparing to unpack .../255-r-cran-lattice_0.22-5-1_arm64.deb ... 438s Unpacking r-cran-lattice (0.22-5-1) ... 438s Selecting previously unselected package r-cran-matrix. 438s Preparing to unpack .../256-r-cran-matrix_1.6-5-1_arm64.deb ... 438s Unpacking r-cran-matrix (1.6-5-1) ... 438s Selecting previously unselected package r-cran-matrixstats. 438s Preparing to unpack .../257-r-cran-matrixstats_1.2.0-1_arm64.deb ... 438s Unpacking r-cran-matrixstats (1.2.0-1) ... 438s Selecting previously unselected package r-bioc-matrixgenerics. 438s Preparing to unpack .../258-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 438s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 438s Selecting previously unselected package r-cran-abind. 438s Preparing to unpack .../259-r-cran-abind_1.4-5-2_all.deb ... 438s Unpacking r-cran-abind (1.4-5-2) ... 438s Selecting previously unselected package r-bioc-s4arrays. 438s Preparing to unpack .../260-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 438s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 438s Selecting previously unselected package r-bioc-sparsearray. 438s Preparing to unpack .../261-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 438s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 439s Selecting previously unselected package r-bioc-delayedarray. 439s Preparing to unpack .../262-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 439s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 439s Selecting previously unselected package r-bioc-genomicranges. 439s Preparing to unpack .../263-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 439s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 439s Selecting previously unselected package r-bioc-summarizedexperiment. 439s Preparing to unpack .../264-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 439s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 439s Selecting previously unselected package r-bioc-rhtslib. 439s Preparing to unpack .../265-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 439s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 439s Selecting previously unselected package r-bioc-rsamtools. 439s Preparing to unpack .../266-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 439s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 439s Selecting previously unselected package r-bioc-genomicalignments. 439s Preparing to unpack .../267-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 439s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 440s Selecting previously unselected package r-cran-rjson. 440s Preparing to unpack .../268-r-cran-rjson_0.2.21-1_arm64.deb ... 440s Unpacking r-cran-rjson (0.2.21-1) ... 440s Selecting previously unselected package r-cran-restfulr. 440s Preparing to unpack .../269-r-cran-restfulr_0.0.15-1_arm64.deb ... 440s Unpacking r-cran-restfulr (0.0.15-1) ... 440s Selecting previously unselected package r-bioc-rtracklayer. 440s Preparing to unpack .../270-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 440s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 440s Selecting previously unselected package r-bioc-genomicfeatures. 440s Preparing to unpack .../271-r-bioc-genomicfeatures_1.54.3+dfsg-1_all.deb ... 440s Unpacking r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 440s Selecting previously unselected package r-cran-hwriter. 440s Preparing to unpack .../272-r-cran-hwriter_1.3.2.1-1_all.deb ... 440s Unpacking r-cran-hwriter (1.3.2.1-1) ... 440s Selecting previously unselected package r-cran-jpeg. 440s Preparing to unpack .../273-r-cran-jpeg_0.1-10-1_arm64.deb ... 440s Unpacking r-cran-jpeg (0.1-10-1) ... 440s Selecting previously unselected package r-cran-rcolorbrewer. 440s Preparing to unpack .../274-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 440s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 440s Selecting previously unselected package r-cran-deldir. 440s Preparing to unpack .../275-r-cran-deldir_2.0-4-1_arm64.deb ... 440s Unpacking r-cran-deldir (2.0-4-1) ... 440s Selecting previously unselected package r-cran-rcppeigen. 440s Preparing to unpack .../276-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 440s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 441s Selecting previously unselected package r-cran-interp. 441s Preparing to unpack .../277-r-cran-interp_1.1-6-1_arm64.deb ... 441s Unpacking r-cran-interp (1.1-6-1) ... 441s Selecting previously unselected package r-cran-mass. 441s Preparing to unpack .../278-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 441s Unpacking r-cran-mass (7.3-60.0.1-1) ... 441s Selecting previously unselected package r-cran-latticeextra. 441s Preparing to unpack .../279-r-cran-latticeextra_0.6-30-1_all.deb ... 441s Unpacking r-cran-latticeextra (0.6-30-1) ... 441s Selecting previously unselected package r-bioc-shortread. 441s Preparing to unpack .../280-r-bioc-shortread_1.60.0-2_arm64.deb ... 441s Unpacking r-bioc-shortread (1.60.0-2) ... 441s Selecting previously unselected package r-cran-runit. 441s Preparing to unpack .../281-r-cran-runit_0.4.33-1_all.deb ... 441s Unpacking r-cran-runit (0.4.33-1) ... 441s Selecting previously unselected package autopkgtest-satdep. 442s 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453s Setting up r-cran-magrittr (2.0.3-1) ... 453s Setting up r-cran-rappdirs (0.3.3-1) ... 453s Setting up r-cran-filelock (1.0.3-1) ... 453s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 453s Setting up r-cran-littler (0.3.19-1) ... 453s Setting up r-cran-bh (1.84.0-1) ... 453s Setting up r-cran-fs (1.6.3+dfsg-1) ... 453s Setting up r-cran-rcpp (1.0.12-1) ... 453s Setting up r-cran-curl (5.2.0+dfsg-1) ... 453s Setting up r-cran-codetools (0.2-19-1) ... 453s Setting up r-bioc-biocgenerics (0.48.1-2) ... 453s Setting up r-cran-rlang (1.1.3-1) ... 453s Setting up r-cran-matrixstats (1.2.0-1) ... 453s Setting up littler (0.3.19-1) ... 453s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 453s Setting up r-cran-xfun (0.41+dfsg-1) ... 453s Setting up r-cran-sys (3.4.2-1) ... 453s Setting up r-cran-plogr (0.2.0-3build1) ... 453s Setting up r-cran-withr (2.5.0-1) ... 453s Setting up r-cran-mime (0.12-1) ... 453s Setting up r-cran-generics (0.1.3-1) ... 453s Setting up r-cran-base64enc 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453s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 453s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 453s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 453s Setting up r-cran-bitops (1.0-7-1) ... 453s Setting up r-cran-bit64 (4.0.5-1) ... 453s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 453s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 453s Setting up r-cran-deldir (2.0-4-1) ... 453s Setting up r-cran-askpass (1.2.0-1) ... 453s Setting up r-cran-fastmap (1.1.1-1) ... 453s Setting up r-cran-png (0.1-8-1) ... 453s Setting up r-bioc-biobase (2.62.0-1) ... 453s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 453s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 453s Setting up r-cran-utf8 (1.2.4-1) ... 453s Setting up r-cran-stringi (1.8.3-1) ... 453s Setting up texlive-latex-base (2023.20240207-1) ... 453s Setting up 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Setting up r-cran-htmltools (0.5.7-1) ... 453s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 453s Setting up r-bioc-xvector (0.42.0-1) ... 453s Setting up r-cran-sass (0.4.8+dfsg-1) ... 453s Setting up r-cran-dplyr (1.1.4-1) ... 453s Setting up r-cran-rsqlite (2.3.4-1) ... 453s Setting up r-cran-progress (1.2.3-1) ... 453s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 453s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 453s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 453s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 453s Setting up r-cran-fontawesome (0.5.2-1) ... 453s Setting up r-cran-latticeextra (0.6-30-1) ... 453s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 453s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 453s Setting up r-cran-tidyr (1.3.1-1) ... 453s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 453s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 453s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 453s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 453s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 453s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 453s Setting up r-bioc-annotationdbi (1.64.1-1) ... 453s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 453s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 453s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 453s Setting up r-bioc-genomicalignments (1.38.2-1) ... 453s Setting up r-cran-bookdown (0.37+dfsg-1) ... 453s Setting up r-bioc-rtracklayer (1.62.0-1) ... 453s Setting up r-bioc-genomicfeatures (1.54.3+dfsg-1) ... 453s Setting up r-bioc-shortread (1.60.0-2) ... 453s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 453s Setting up autopkgtest-satdep (0) ... 453s Processing triggers for man-db (2.12.0-3) ... 455s Processing triggers for install-info (7.1-3) ... 455s Processing triggers for libc-bin (2.39-0ubuntu6) ... 456s Processing triggers for tex-common (6.18) ... 456s Running updmap-sys. This may take some time... done. 457s Running mktexlsr /var/lib/texmf ... done. 457s Building format(s) --all. 541s This may take some time... done. 565s (Reading database ... 125522 files and directories currently installed.) 565s Removing autopkgtest-satdep (0) ... 566s autopkgtest [10:19:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 566s autopkgtest [10:19:25]: test pkg-r-autopkgtest: [----------------------- 566s Test: Try to load the R library Rsamtools 566s 566s R version 4.3.2 (2023-10-31) -- "Eye Holes" 566s Copyright (C) 2023 The R Foundation for Statistical Computing 566s Platform: aarch64-unknown-linux-gnu (64-bit) 566s 566s R is free software and comes with ABSOLUTELY NO WARRANTY. 566s You are welcome to redistribute it under certain conditions. 566s Type 'license()' or 'licence()' for distribution details. 566s 566s R is a collaborative project with many contributors. 566s Type 'contributors()' for more information and 566s 'citation()' on how to cite R or R packages in publications. 566s 566s Type 'demo()' for some demos, 'help()' for on-line help, or 566s 'help.start()' for an HTML browser interface to help. 566s Type 'q()' to quit R. 566s 567s > library('Rsamtools') 567s Loading required package: GenomeInfoDb 567s Loading required package: BiocGenerics 567s 567s Attaching package: ‘BiocGenerics’ 567s 567s The following objects are masked from ‘package:stats’: 567s 567s IQR, mad, sd, var, xtabs 567s 567s The following objects are masked from ‘package:base’: 567s 567s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 567s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 567s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 567s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 567s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 567s table, tapply, union, unique, unsplit, which.max, which.min 567s 567s Loading required package: S4Vectors 567s Loading required package: stats4 569s 569s Attaching package: ‘S4Vectors’ 569s 569s The following object is masked from ‘package:utils’: 569s 569s findMatches 569s 569s The following objects are masked from ‘package:base’: 569s 569s expand.grid, I, unname 569s 569s Loading required package: IRanges 571s Loading required package: GenomicRanges 573s Loading required package: Biostrings 573s Loading required package: XVector 574s 574s Attaching package: ‘Biostrings’ 574s 574s The following object is masked from ‘package:base’: 574s 574s strsplit 574s 575s > 575s > 575s Other tests are currently unsupported! 575s They will be progressively added. 575s autopkgtest [10:19:34]: test pkg-r-autopkgtest: -----------------------] 575s pkg-r-autopkgtest PASS 575s autopkgtest [10:19:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 576s autopkgtest [10:19:35]: @@@@@@@@@@@@@@@@@@@@ summary 576s pkg-r-autopkgtest PASS 590s Creating nova instance adt-noble-arm64-r-bioc-rsamtools-20240325-100959-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240324.img (UUID 2df78aec-1bf7-4c70-8bf1-31fba04b7d21)...