0s autopkgtest [21:25:20]: starting date and time: 2024-03-19 21:25:20+0000
  0s autopkgtest [21:25:20]: git checkout: 4a1cd702 l/adt_testbed: don't blame the testbed for unsolvable build deps
  0s autopkgtest [21:25:20]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.16fph5sx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:xz-utils --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=xz-utils/5.6.0-0.2 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-30.secgroup --name adt-noble-arm64-r-bioc-rsamtools-20240319-212520-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 94s autopkgtest [21:26:54]: testbed dpkg architecture: arm64
 94s autopkgtest [21:26:54]: testbed apt version: 2.7.12
 94s autopkgtest [21:26:54]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 95s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 96s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3757 kB]
 96s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [52.7 kB]
 96s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [493 kB]
 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [666 kB]
 97s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
 97s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [41.7 kB]
 97s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
 97s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4156 kB]
 97s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
 97s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [56.7 kB]
 97s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
103s Fetched 9359 kB in 3s (2999 kB/s)
103s Reading package lists...
107s Reading package lists...
108s Building dependency tree...
108s Reading state information...
109s Calculating upgrade...
110s The following packages will be upgraded:
110s   liblzma5 xz-utils
111s 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
111s Need to get 401 kB of archives.
111s After this operation, 88.1 kB disk space will be freed.
111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblzma5 arm64 5.6.0-0.2 [129 kB]
111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 xz-utils arm64 5.6.0-0.2 [272 kB]
112s Fetched 401 kB in 1s (788 kB/s)
112s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
112s Preparing to unpack .../liblzma5_5.6.0-0.2_arm64.deb ...
112s Unpacking liblzma5:arm64 (5.6.0-0.2) over (5.4.5-0.3) ...
112s Setting up liblzma5:arm64 (5.6.0-0.2) ...
112s (Reading database ... 
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75850 files and directories currently installed.)
112s Preparing to unpack .../xz-utils_5.6.0-0.2_arm64.deb ...
112s Unpacking xz-utils (5.6.0-0.2) over (5.4.5-0.3) ...
112s Setting up xz-utils (5.6.0-0.2) ...
112s Processing triggers for man-db (2.12.0-3) ...
113s Processing triggers for libc-bin (2.39-0ubuntu2) ...
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
117s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease
117s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease
117s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease
117s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease
121s Reading package lists...
121s Reading package lists...
121s Building dependency tree...
121s Reading state information...
122s Calculating upgrade...
123s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
124s Reading package lists...
124s Building dependency tree...
124s Reading state information...
126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
129s autopkgtest [21:27:29]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
129s autopkgtest [21:27:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools
132s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (dsc) [2354 B]
132s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (tar) [2463 kB]
132s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (diff) [6804 B]
133s gpgv: Signature made Thu Nov 30 10:32:59 2023 UTC
133s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
133s gpgv:                issuer "tillea@rki.de"
133s gpgv: Can't check signature: No public key
133s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1.dsc: no acceptable signature found
133s autopkgtest [21:27:33]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1
135s autopkgtest [21:27:35]: build not needed
137s autopkgtest [21:27:37]: test pkg-r-autopkgtest: preparing testbed
141s Reading package lists...
141s Building dependency tree...
141s Reading state information...
142s Starting pkgProblemResolver with broken count: 0
143s Starting 2 pkgProblemResolver with broken count: 0
143s Done
144s The following additional packages will be installed:
144s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
144s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
144s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
144s   g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
144s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
144s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
144s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
144s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
144s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
144s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
144s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
144s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
144s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
144s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
144s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
144s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
144s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
144s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
144s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
144s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
144s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
144s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev
144s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
144s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
144s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
144s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler
144s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
144s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
144s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
144s   r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart
144s   r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb
144s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
144s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
144s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
144s   r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray
144s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
144s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit
144s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib
144s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11
144s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir
144s   r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi
144s   r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
144s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
144s   r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr
144s   r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
144s   r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
144s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
144s   r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
144s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
144s   r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs
144s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
144s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite
144s   r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools
144s   r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr
144s   r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr
144s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto
144s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
144s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
144s Suggested packages:
144s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
144s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
144s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
144s   | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc
144s   libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
144s   libboost-context1.83-dev libboost-contract1.83-dev
144s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
144s   libboost-exception1.83-dev libboost-fiber1.83-dev
144s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
144s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
144s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
144s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
144s   libboost-numpy1.83-dev libboost-program-options1.83-dev
144s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
144s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
144s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
144s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
144s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
144s   glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
144s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
144s   tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex
144s   pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff
144s   ghc php python ruby libjs-katex citation-style-language-styles elpa-ess
144s   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic
144s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo
144s   r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat
144s   r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc
144s   r-cran-doparallel r-bioc-variantannotation r-cran-batchtools
144s   r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome
144s   r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats
144s   r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter
144s   r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq
144s   r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff
144s   r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate
144s   r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt
144s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales
144s   r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi
144s   r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr
144s   r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper
144s   ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec
144s   texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex
144s Recommended packages:
144s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
144s   r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes
144s   r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui
144s   r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2
144s   r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx
144s   r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio
144s   r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling
144s   r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql
144s   r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo
144s   r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf
144s   r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice
144s   r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse
144s   r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis
144s   r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest
144s   r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown
144s   r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl
144s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
145s The following NEW packages will be installed:
145s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
145s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
145s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
145s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
145s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
145s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
145s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
145s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
145s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
145s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
145s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
145s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
145s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
145s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
145s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
145s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
145s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
145s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
145s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
145s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
145s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
145s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
145s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev
145s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
145s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
145s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
145s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler
145s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
145s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
145s   r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics
145s   r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart
145s   r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb
145s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
145s   r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics
145s   r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays
145s   r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray
145s   r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
145s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit
145s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib
145s   r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11
145s   r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir
145s   r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi
145s   r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
145s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue
145s   r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr
145s   r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite
145s   r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra
145s   r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
145s   r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
145s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
145s   r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs
145s   r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl
145s   r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite
145s   r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools
145s   r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr
145s   r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr
145s   r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto
145s   t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries
145s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
145s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded.
145s Need to get 426 MB/426 MB of archives.
145s After this operation, 1353 MB of additional disk space will be used.
145s Get:1 /tmp/autopkgtest.H7zGTU/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [788 B]
145s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
145s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
146s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
147s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
147s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
147s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
147s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
147s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
147s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
147s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
149s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
149s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
149s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
149s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
149s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
149s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
149s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
149s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
149s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
149s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
149s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
149s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
149s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
150s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
150s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
151s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
151s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
151s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
151s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
151s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
151s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
151s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
151s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
151s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
151s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
151s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
151s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
151s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
151s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
151s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
151s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
151s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
151s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
151s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
151s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
151s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
152s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
152s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
152s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
152s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
152s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
152s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
152s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
152s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
152s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
152s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
152s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB]
152s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B]
152s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
152s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
152s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
152s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
152s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
152s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
152s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
152s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
152s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
152s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
152s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
152s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
152s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
153s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
153s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
153s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
153s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
153s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
153s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
153s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
153s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
153s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
153s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
153s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
153s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
153s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
153s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
153s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
153s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
153s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
153s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
153s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
153s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
153s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB]
153s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
153s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
153s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
153s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
153s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
153s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
153s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
153s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
153s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
154s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
154s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
154s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
154s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
154s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
154s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
154s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
154s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
154s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
154s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
154s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB]
154s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB]
154s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
154s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
154s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
154s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB]
154s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
154s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
155s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB]
155s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
155s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
155s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
155s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
155s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
155s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
155s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
155s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB]
155s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
155s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
155s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
155s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB]
155s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
155s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
155s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
155s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
157s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
157s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
157s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
157s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
157s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
157s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
157s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
158s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
158s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
158s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
158s Get:148 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 liblzma-dev arm64 5.6.0-0.2 [180 kB]
158s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
158s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
158s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
158s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
158s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
158s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
158s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB]
158s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB]
159s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB]
159s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
159s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
159s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
159s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
159s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
159s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
159s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
159s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
159s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
159s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
159s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
159s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
159s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB]
159s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB]
159s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
159s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
159s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB]
159s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB]
159s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB]
159s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
159s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
159s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB]
159s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
159s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
159s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
159s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
159s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
160s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
160s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
160s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
161s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
161s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
161s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
161s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
161s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
161s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
161s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
161s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
161s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
161s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB]
161s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB]
161s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB]
162s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
162s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
162s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB]
162s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
162s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB]
162s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
162s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
162s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB]
163s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
163s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
163s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
163s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
163s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
163s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
163s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB]
163s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
163s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
163s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
163s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
164s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
164s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
164s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
164s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
164s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
165s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
165s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
165s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
165s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
165s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
165s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
165s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
166s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
166s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
166s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
166s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
166s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
166s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
166s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
166s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
166s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
166s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
166s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
166s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
166s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
166s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
166s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
166s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB]
166s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB]
166s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB]
167s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB]
168s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB]
168s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
171s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
171s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB]
171s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB]
171s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB]
171s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB]
171s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB]
171s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
171s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
171s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
171s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB]
171s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
171s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB]
171s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB]
171s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB]
171s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB]
171s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB]
172s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
172s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB]
172s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB]
172s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB]
172s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB]
172s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB]
172s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB]
172s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
172s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
172s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB]
172s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
172s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB]
172s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB]
172s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB]
173s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
173s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB]
173s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB]
173s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB]
174s Preconfiguring packages ...
175s Fetched 426 MB in 28s (15.1 MB/s)
175s Selecting previously unselected package libc-dev-bin.
175s (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 75790 files and directories currently installed.)
175s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
175s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
175s Selecting previously unselected package linux-libc-dev:arm64.
175s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ...
175s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
175s Selecting previously unselected package libcrypt-dev:arm64.
176s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
176s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
176s Selecting previously unselected package libtirpc-dev:arm64.
176s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
176s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
176s Selecting previously unselected package libnsl-dev:arm64.
176s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ...
176s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
176s Selecting previously unselected package rpcsvc-proto.
176s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
176s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
176s Selecting previously unselected package libc6-dev:arm64.
176s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ...
176s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
176s Selecting previously unselected package libisl23:arm64.
176s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ...
176s Unpacking libisl23:arm64 (0.26-3) ...
176s Selecting previously unselected package libmpc3:arm64.
176s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ...
176s Unpacking libmpc3:arm64 (1.3.1-1) ...
176s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
176s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
176s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
177s Selecting previously unselected package cpp-13.
177s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
177s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
177s Selecting previously unselected package cpp-aarch64-linux-gnu.
177s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
177s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
177s Selecting previously unselected package cpp.
177s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
177s Unpacking cpp (4:13.2.0-7ubuntu1) ...
177s Selecting previously unselected package libcc1-0:arm64.
177s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
177s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libgomp1:arm64.
177s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
177s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libitm1:arm64.
177s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ...
177s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libatomic1:arm64.
177s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
177s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
177s Selecting previously unselected package libasan8:arm64.
177s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ...
177s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package liblsan0:arm64.
178s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
178s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package libtsan2:arm64.
178s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
178s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package libubsan1:arm64.
178s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
178s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package libhwasan0:arm64.
178s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
178s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
178s Selecting previously unselected package libgcc-13-dev:arm64.
178s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
178s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
179s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
179s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
179s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
180s Selecting previously unselected package gcc-13.
180s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
180s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
180s Selecting previously unselected package gcc-aarch64-linux-gnu.
180s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
180s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
180s Selecting previously unselected package gcc.
180s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
180s Unpacking gcc (4:13.2.0-7ubuntu1) ...
180s Selecting previously unselected package libstdc++-13-dev:arm64.
180s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
180s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
180s Selecting previously unselected package g++-13-aarch64-linux-gnu.
181s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
181s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
181s Selecting previously unselected package g++-13.
181s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ...
181s Unpacking g++-13 (13.2.0-17ubuntu2) ...
181s Selecting previously unselected package g++-aarch64-linux-gnu.
181s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
181s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
181s Selecting previously unselected package g++.
181s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
181s Unpacking g++ (4:13.2.0-7ubuntu1) ...
181s Selecting previously unselected package build-essential.
181s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ...
181s Unpacking build-essential (12.10ubuntu1) ...
181s Selecting previously unselected package dctrl-tools.
181s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ...
181s Unpacking dctrl-tools (2.24-3build2) ...
181s Selecting previously unselected package fonts-dejavu-mono.
181s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ...
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182s Selecting previously unselected package fontconfig-config.
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182s Selecting previously unselected package libfontconfig1:arm64.
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182s Selecting previously unselected package fonts-font-awesome.
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182s Selecting previously unselected package fonts-glyphicons-halflings.
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183s Selecting previously unselected package fonts-lmodern.
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183s Selecting previously unselected package fonts-mathjax.
183s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
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183s Selecting previously unselected package libgfortran5:arm64.
183s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
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183s Selecting previously unselected package libgfortran-13-dev:arm64.
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183s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
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184s Selecting previously unselected package gfortran-aarch64-linux-gnu.
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184s Selecting previously unselected package icu-devtools.
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184s Selecting previously unselected package javascript-common.
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184s Selecting previously unselected package liblatex-tounicode-perl.
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185s Selecting previously unselected package libblas3:arm64.
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185s Selecting previously unselected package libboost1.83-dev:arm64.
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195s Selecting previously unselected package libjpeg-turbo8:arm64.
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197s Selecting previously unselected package libkpathsea6:arm64.
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198s Selecting previously unselected package liblua5.4-0:arm64.
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199s Selecting previously unselected package libpangocairo-1.0-0:arm64.
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201s Selecting previously unselected package libtk8.6:arm64.
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202s Selecting previously unselected package libzzip-0-13:arm64.
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202s Selecting previously unselected package r-base-core.
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203s Unpacking node-bootstrap-sass (3.4.3-2) ...
203s Selecting previously unselected package node-html5shiv.
203s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ...
203s Unpacking node-html5shiv (3.7.3+dfsg-5) ...
203s Selecting previously unselected package node-normalize.css.
203s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ...
203s Unpacking node-normalize.css (8.0.1-5) ...
203s Selecting previously unselected package pandoc-data.
203s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ...
203s Unpacking pandoc-data (3.1.3-1) ...
204s Selecting previously unselected package pandoc.
204s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ...
204s Unpacking pandoc (3.1.3+ds-2) ...
206s Selecting previously unselected package pkgconf-bin.
206s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ...
206s Unpacking pkgconf-bin (1.8.1-2) ...
206s Selecting previously unselected package pkgconf:arm64.
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206s Unpacking pkgconf:arm64 (1.8.1-2) ...
206s Selecting previously unselected package pkg-config:arm64.
206s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ...
206s Unpacking pkg-config:arm64 (1.8.1-2) ...
206s Selecting previously unselected package liblzma-dev:arm64.
206s Preparing to unpack .../146-liblzma-dev_5.6.0-0.2_arm64.deb ...
206s Unpacking liblzma-dev:arm64 (5.6.0-0.2) ...
207s Selecting previously unselected package r-base-dev.
207s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ...
207s Unpacking r-base-dev (4.3.2-1build1) ...
207s Selecting previously unselected package pkg-r-autopkgtest.
207s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
207s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
207s Selecting previously unselected package r-bioc-biocgenerics.
207s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ...
207s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
207s Selecting previously unselected package r-bioc-biobase.
207s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ...
207s Unpacking r-bioc-biobase (2.62.0-1) ...
207s Selecting previously unselected package r-bioc-s4vectors.
207s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ...
207s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ...
207s Selecting previously unselected package r-bioc-iranges.
207s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ...
207s Unpacking r-bioc-iranges (2.36.0-1) ...
207s Selecting previously unselected package r-cran-dbi.
207s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ...
207s Unpacking r-cran-dbi (1.2.2-1) ...
207s Selecting previously unselected package r-cran-bit.
207s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ...
207s Unpacking r-cran-bit (4.0.5-1) ...
208s Selecting previously unselected package r-cran-bit64.
208s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ...
208s Unpacking r-cran-bit64 (4.0.5-1) ...
208s Selecting previously unselected package r-cran-rlang.
208s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ...
208s Unpacking r-cran-rlang (1.1.3-1) ...
208s Selecting previously unselected package r-cran-cli.
208s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ...
208s Unpacking r-cran-cli (3.6.2-1) ...
208s Selecting previously unselected package r-cran-glue.
208s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ...
208s Unpacking r-cran-glue (1.7.0-1) ...
208s Selecting previously unselected package r-cran-lifecycle.
208s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ...
208s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ...
208s Selecting previously unselected package r-cran-vctrs.
208s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ...
208s Unpacking r-cran-vctrs (0.6.5-1) ...
208s Selecting previously unselected package r-cran-blob.
208s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ...
208s Unpacking r-cran-blob (1.2.4-1) ...
209s Selecting previously unselected package r-cran-fastmap.
209s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ...
209s Unpacking r-cran-fastmap (1.1.1-1) ...
209s Selecting previously unselected package r-cran-cachem.
209s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ...
209s Unpacking r-cran-cachem (1.0.8-1) ...
209s Selecting previously unselected package r-cran-memoise.
209s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ...
209s Unpacking r-cran-memoise (2.0.1-1) ...
209s Selecting previously unselected package r-cran-pkgconfig.
209s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ...
209s Unpacking r-cran-pkgconfig (2.0.3-2build1) ...
209s Selecting previously unselected package r-cran-plogr.
209s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ...
209s Unpacking r-cran-plogr (0.2.0-3build1) ...
209s Selecting previously unselected package r-cran-cpp11.
209s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ...
209s Unpacking r-cran-cpp11 (0.4.7-1) ...
209s Selecting previously unselected package r-cran-rsqlite.
209s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ...
209s Unpacking r-cran-rsqlite (2.3.4-1) ...
209s Selecting previously unselected package r-cran-curl.
209s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ...
209s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
209s Selecting previously unselected package r-cran-jsonlite.
209s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
209s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
209s Selecting previously unselected package r-cran-mime.
209s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ...
209s Unpacking r-cran-mime (0.12-1) ...
210s Selecting previously unselected package r-cran-sys.
210s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ...
210s Unpacking r-cran-sys (3.4.2-1) ...
210s Selecting previously unselected package r-cran-askpass.
210s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ...
210s Unpacking r-cran-askpass (1.2.0-1) ...
210s Selecting previously unselected package r-cran-openssl.
210s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ...
210s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
210s Selecting previously unselected package r-cran-r6.
210s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ...
210s Unpacking r-cran-r6 (2.5.1-1) ...
210s Selecting previously unselected package r-cran-httr.
210s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ...
210s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
210s Selecting previously unselected package r-cran-png.
210s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ...
210s Unpacking r-cran-png (0.1-8-1) ...
210s Selecting previously unselected package r-bioc-zlibbioc.
210s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
210s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
210s Selecting previously unselected package r-bioc-xvector.
210s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ...
210s Unpacking r-bioc-xvector (0.42.0-1) ...
210s Selecting previously unselected package r-cran-bitops.
210s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ...
210s Unpacking r-cran-bitops (1.0-7-1) ...
210s Selecting previously unselected package r-cran-rcurl.
210s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ...
210s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
211s Selecting previously unselected package r-bioc-genomeinfodbdata.
211s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
211s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
211s Selecting previously unselected package r-bioc-genomeinfodb.
211s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
211s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
211s Selecting previously unselected package r-cran-crayon.
211s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ...
211s Unpacking r-cran-crayon (1.5.2-1) ...
211s Selecting previously unselected package r-bioc-biostrings.
211s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ...
211s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
212s Selecting previously unselected package r-bioc-keggrest.
212s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
212s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
212s Selecting previously unselected package r-bioc-annotationdbi.
212s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ...
212s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
212s Selecting previously unselected package r-cran-generics.
212s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ...
212s Unpacking r-cran-generics (0.1.3-1) ...
212s Selecting previously unselected package r-cran-magrittr.
212s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ...
212s Unpacking r-cran-magrittr (2.0.3-1) ...
212s Selecting previously unselected package r-cran-fansi.
212s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ...
212s Unpacking r-cran-fansi (1.0.5-1) ...
212s Selecting previously unselected package r-cran-utf8.
212s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ...
212s Unpacking r-cran-utf8 (1.2.4-1) ...
212s Selecting previously unselected package r-cran-pillar.
212s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
212s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
212s Selecting previously unselected package r-cran-tibble.
212s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ...
212s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
213s Selecting previously unselected package r-cran-withr.
213s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ...
213s Unpacking r-cran-withr (2.5.0-1) ...
213s Selecting previously unselected package r-cran-tidyselect.
213s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ...
213s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
213s Selecting previously unselected package r-cran-dplyr.
213s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ...
213s Unpacking r-cran-dplyr (1.1.4-1) ...
213s Selecting previously unselected package r-cran-purrr.
213s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ...
213s Unpacking r-cran-purrr (1.0.2-1) ...
213s Selecting previously unselected package r-cran-stringi.
213s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ...
213s Unpacking r-cran-stringi (1.8.3-1) ...
213s Selecting previously unselected package r-cran-stringr.
213s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ...
213s Unpacking r-cran-stringr (1.5.1-1) ...
213s Selecting previously unselected package r-cran-tidyr.
213s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ...
213s Unpacking r-cran-tidyr (1.3.1-1) ...
214s Selecting previously unselected package r-cran-dbplyr.
214s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
214s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
214s Selecting previously unselected package r-cran-filelock.
214s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ...
214s Unpacking r-cran-filelock (1.0.3-1) ...
214s Selecting previously unselected package r-bioc-biocfilecache.
214s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
214s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
214s Selecting previously unselected package r-bioc-biocio.
214s Preparing to unpack .../204-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
214s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
214s Selecting previously unselected package r-cran-formatr.
214s Preparing to unpack .../205-r-cran-formatr_1.14-1_all.deb ...
214s Unpacking r-cran-formatr (1.14-1) ...
214s Selecting previously unselected package r-cran-lambda.r.
214s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ...
214s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
214s Selecting previously unselected package r-cran-futile.options.
214s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ...
214s Unpacking r-cran-futile.options (1.0.1-3build1) ...
214s Selecting previously unselected package r-cran-futile.logger.
214s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ...
214s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
214s Selecting previously unselected package r-cran-snow.
214s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ...
214s Unpacking r-cran-snow (1:0.4.4-2) ...
215s Selecting previously unselected package r-cran-codetools.
215s Preparing to unpack .../210-r-cran-codetools_0.2-19-1_all.deb ...
215s Unpacking r-cran-codetools (0.2-19-1) ...
215s Selecting previously unselected package r-cran-bh.
215s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ...
215s Unpacking r-cran-bh (1.84.0-1) ...
215s Selecting previously unselected package r-bioc-biocparallel.
215s Preparing to unpack .../212-r-bioc-biocparallel_1.36.0-1_arm64.deb ...
215s Unpacking r-bioc-biocparallel (1.36.0-1) ...
215s Selecting previously unselected package r-cran-base64enc.
215s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_arm64.deb ...
215s Unpacking r-cran-base64enc (0.1-3-3) ...
215s Selecting previously unselected package r-cran-digest.
215s Preparing to unpack .../214-r-cran-digest_0.6.34-1_arm64.deb ...
215s Unpacking r-cran-digest (0.6.34-1) ...
215s Selecting previously unselected package r-cran-ellipsis.
215s Preparing to unpack .../215-r-cran-ellipsis_0.3.2-2_arm64.deb ...
215s Unpacking r-cran-ellipsis (0.3.2-2) ...
215s Selecting previously unselected package r-cran-htmltools.
215s Preparing to unpack .../216-r-cran-htmltools_0.5.7-1_arm64.deb ...
215s Unpacking r-cran-htmltools (0.5.7-1) ...
215s Selecting previously unselected package r-cran-evaluate.
215s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ...
215s Unpacking r-cran-evaluate (0.23-1) ...
215s Selecting previously unselected package r-cran-xfun.
215s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ...
215s Unpacking r-cran-xfun (0.41+dfsg-1) ...
215s Selecting previously unselected package r-cran-highr.
215s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ...
215s Unpacking r-cran-highr (0.10+dfsg-1) ...
216s Selecting previously unselected package r-cran-yaml.
216s Preparing to unpack .../220-r-cran-yaml_2.3.8-1_arm64.deb ...
216s Unpacking r-cran-yaml (2.3.8-1) ...
216s Selecting previously unselected package libjs-mathjax.
216s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
216s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
218s Selecting previously unselected package r-cran-knitr.
218s Preparing to unpack .../222-r-cran-knitr_1.45+dfsg-1_all.deb ...
218s Unpacking r-cran-knitr (1.45+dfsg-1) ...
219s Selecting previously unselected package r-cran-jquerylib.
219s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
219s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
219s Selecting previously unselected package r-cran-fs.
219s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ...
219s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
219s Selecting previously unselected package r-cran-rappdirs.
219s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1_arm64.deb ...
219s Unpacking r-cran-rappdirs (0.3.3-1) ...
219s Selecting previously unselected package r-cran-sass.
219s Preparing to unpack .../226-r-cran-sass_0.4.8+dfsg-1_arm64.deb ...
219s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
219s Selecting previously unselected package r-cran-bslib.
219s Preparing to unpack .../227-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
219s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
220s Selecting previously unselected package r-cran-fontawesome.
220s Preparing to unpack .../228-r-cran-fontawesome_0.5.2-1_all.deb ...
220s Unpacking r-cran-fontawesome (0.5.2-1) ...
220s Selecting previously unselected package r-cran-tinytex.
220s Preparing to unpack .../229-r-cran-tinytex_0.49-1_all.deb ...
220s Unpacking r-cran-tinytex (0.49-1) ...
220s Selecting previously unselected package libjs-modernizr.
220s Preparing to unpack .../230-libjs-modernizr_2.6.2+ds1-5_all.deb ...
220s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
220s Selecting previously unselected package r-cran-pkgkitten.
220s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ...
220s Unpacking r-cran-pkgkitten (0.2.3-1) ...
220s Selecting previously unselected package r-cran-rcpp.
220s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ...
220s Unpacking r-cran-rcpp (1.0.12-1) ...
220s Selecting previously unselected package r-cran-later.
220s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ...
220s Unpacking r-cran-later (1.3.2+dfsg-1) ...
221s Selecting previously unselected package r-cran-promises.
221s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ...
221s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
221s Selecting previously unselected package r-cran-httpuv.
221s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ...
221s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
221s Selecting previously unselected package r-cran-xtable.
221s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ...
221s Unpacking r-cran-xtable (1:1.8-4-2) ...
221s Selecting previously unselected package r-cran-sourcetools.
221s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ...
221s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
221s Selecting previously unselected package r-cran-commonmark.
221s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ...
221s Unpacking r-cran-commonmark (1.9.1-1) ...
221s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
221s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
221s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
221s Selecting previously unselected package r-cran-shiny.
221s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
221s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
222s Selecting previously unselected package r-cran-rmarkdown.
222s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
222s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
222s Selecting previously unselected package r-cran-bookdown.
222s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ...
222s Unpacking r-cran-bookdown (0.37+dfsg-1) ...
222s Selecting previously unselected package r-cran-biocmanager.
222s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
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250s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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253s Setting up littler (0.3.19-1) ...
253s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
253s Setting up r-cran-xfun (0.41+dfsg-1) ...
253s Setting up r-cran-sys (3.4.2-1) ...
253s Setting up r-cran-plogr (0.2.0-3build1) ...
253s Setting up r-cran-withr (2.5.0-1) ...
253s Setting up r-cran-mime (0.12-1) ...
253s Setting up r-cran-generics (0.1.3-1) ...
253s Setting up r-cran-base64enc (0.1-3-3) ...
253s Setting up r-cran-abind (1.4-5-2) ...
253s Setting up r-cran-digest (0.6.34-1) ...
253s Setting up r-cran-yaml (2.3.8-1) ...
253s Setting up r-cran-lambda.r (1.2.4-2build1) ...
253s Setting up r-cran-evaluate (0.23-1) ...
253s Setting up r-cran-dbi (1.2.2-1) ...
253s Setting up r-cran-highr (0.10+dfsg-1) ...
253s Setting up r-cran-prettyunits (1.2.0-1) ...
253s Setting up r-cran-fansi (1.0.5-1) ...
253s Setting up r-cran-mass (7.3-60.0.1-1) ...
253s Setting up r-cran-snow (1:0.4.4-2) ...
253s Setting up r-cran-glue (1.7.0-1) ...
253s Setting up r-cran-bit (4.0.5-1) ...
253s Setting up r-cran-xtable (1:1.8-4-2) ...
253s Setting up r-cran-cli (3.6.2-1) ...
253s Setting up gfortran (4:13.2.0-7ubuntu1) ...
253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
253s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
253s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
253s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
253s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
253s Setting up r-cran-bitops (1.0-7-1) ...
253s Setting up r-cran-bit64 (4.0.5-1) ...
253s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
253s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
253s Setting up r-cran-deldir (2.0-4-1) ...
253s Setting up r-cran-askpass (1.2.0-1) ...
253s Setting up r-cran-fastmap (1.1.1-1) ...
253s Setting up r-cran-png (0.1-8-1) ...
253s Setting up r-bioc-biobase (2.62.0-1) ...
253s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
253s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
253s Setting up r-cran-utf8 (1.2.4-1) ...
253s Setting up r-cran-stringi (1.8.3-1) ...
253s Setting up texlive-latex-base (2023.20240207-1) ...
253s Setting up r-cran-hwriter (1.3.2.1-1) ...
253s Setting up r-cran-cpp11 (0.4.7-1) ...
253s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
253s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
253s Setting up r-cran-runit (0.4.32-3) ...
253s Setting up r-cran-futile.logger (1.4.3-4build1) ...
253s Setting up r-cran-later (1.3.2+dfsg-1) ...
253s Setting up r-cran-matrix (1.6-5-1) ...
253s Setting up r-cran-tinytex (0.49-1) ...
253s Setting up r-cran-knitr (1.45+dfsg-1) ...
253s Setting up g++ (4:13.2.0-7ubuntu1) ...
253s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
253s Setting up r-cran-cachem (1.0.8-1) ...
253s Setting up build-essential (12.10ubuntu1) ...
253s Setting up r-bioc-iranges (2.36.0-1) ...
253s Setting up r-cran-rjson (0.2.21-1) ...
253s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
253s Setting up r-cran-restfulr (0.0.15-1) ...
253s Setting up r-cran-vctrs (0.6.5-1) ...
253s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
253s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
253s Setting up r-cran-ellipsis (0.3.2-2) ...
253s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
253s Setting up r-base-dev (4.3.2-1build1) ...
253s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
253s Setting up r-cran-stringr (1.5.1-1) ...
253s Setting up r-bioc-biocparallel (1.36.0-1) ...
253s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
253s Setting up r-cran-xml2 (1.3.6-1) ...
253s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
253s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
253s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
253s Setting up texlive-bibtex-extra (2023.20240207-1) ...
253s Setting up r-cran-interp (1.1-6-1) ...
253s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
253s Setting up r-cran-httr (1.4.7+dfsg-1) ...
253s Setting up r-cran-hms (1.1.3-1) ...
253s Setting up r-cran-memoise (2.0.1-1) ...
253s Setting up r-cran-promises (1.2.1+dfsg-1) ...
253s Setting up r-cran-purrr (1.0.2-1) ...
253s Setting up r-cran-blob (1.2.4-1) ...
253s Setting up r-cran-htmltools (0.5.7-1) ...
253s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
253s Setting up r-bioc-xvector (0.42.0-1) ...
253s Setting up r-cran-sass (0.4.8+dfsg-1) ...
253s Setting up r-cran-dplyr (1.1.4-1) ...
253s Setting up r-cran-rsqlite (2.3.4-1) ...
253s Setting up r-cran-progress (1.2.3-1) ...
253s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
253s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
253s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
253s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
253s Setting up r-cran-fontawesome (0.5.2-1) ...
253s Setting up r-cran-latticeextra (0.6-30-1) ...
253s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
253s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
253s Setting up r-cran-tidyr (1.3.1-1) ...
253s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
253s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
253s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
253s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
253s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
253s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
253s Setting up r-bioc-annotationdbi (1.64.1-1) ...
253s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
253s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
253s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
253s Setting up r-bioc-genomicalignments (1.38.2-1) ...
253s Setting up r-cran-bookdown (0.37+dfsg-1) ...
253s Setting up r-bioc-rtracklayer (1.62.0-1) ...
253s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
253s Setting up r-bioc-shortread (1.60.0-2) ...
253s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
253s Setting up autopkgtest-satdep (0) ...
253s Processing triggers for man-db (2.12.0-3) ...
255s Processing triggers for install-info (7.1-3) ...
255s Processing triggers for libc-bin (2.39-0ubuntu2) ...
255s Processing triggers for tex-common (6.18) ...
256s Running updmap-sys. This may take some time... done.
256s Running mktexlsr /var/lib/texmf ... done.
257s Building format(s) --all.
334s 	This may take some time... done.
363s (Reading database ... 125941 files and directories currently installed.)
363s Removing autopkgtest-satdep (0) ...
364s autopkgtest [21:31:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
364s autopkgtest [21:31:24]: test pkg-r-autopkgtest: [-----------------------
364s Test: Try to load the R library Rsamtools
364s 
364s R version 4.3.2 (2023-10-31) -- "Eye Holes"
364s Copyright (C) 2023 The R Foundation for Statistical Computing
364s Platform: aarch64-unknown-linux-gnu (64-bit)
364s 
364s R is free software and comes with ABSOLUTELY NO WARRANTY.
364s You are welcome to redistribute it under certain conditions.
364s Type 'license()' or 'licence()' for distribution details.
364s 
364s R is a collaborative project with many contributors.
364s Type 'contributors()' for more information and
364s 'citation()' on how to cite R or R packages in publications.
364s 
364s Type 'demo()' for some demos, 'help()' for on-line help, or
364s 'help.start()' for an HTML browser interface to help.
364s Type 'q()' to quit R.
364s 
364s > library('Rsamtools')
364s Loading required package: GenomeInfoDb
364s Loading required package: BiocGenerics
365s 
365s Attaching package: ‘BiocGenerics’
365s 
365s The following objects are masked from ‘package:stats’:
365s 
365s     IQR, mad, sd, var, xtabs
365s 
365s The following objects are masked from ‘package:base’:
365s 
365s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
365s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
365s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
365s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
365s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
365s     table, tapply, union, unique, unsplit, which.max, which.min
365s 
365s Loading required package: S4Vectors
365s Loading required package: stats4
367s 
367s Attaching package: ‘S4Vectors’
367s 
367s The following object is masked from ‘package:utils’:
367s 
367s     findMatches
367s 
367s The following objects are masked from ‘package:base’:
367s 
367s     expand.grid, I, unname
367s 
367s Loading required package: IRanges
369s Loading required package: GenomicRanges
371s Loading required package: Biostrings
371s Loading required package: XVector
373s 
373s Attaching package: ‘Biostrings’
373s 
373s The following object is masked from ‘package:base’:
373s 
373s     strsplit
373s 
373s > 
373s > 
373s Other tests are currently unsupported!
373s They will be progressively added.
373s autopkgtest [21:31:33]: test pkg-r-autopkgtest: -----------------------]
374s autopkgtest [21:31:34]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
374s pkg-r-autopkgtest    PASS
374s autopkgtest [21:31:34]: @@@@@@@@@@@@@@@@@@@@ summary
374s pkg-r-autopkgtest    PASS
386s Creating nova instance adt-noble-arm64-r-bioc-rsamtools-20240319-212520-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240319.img (UUID bfed3386-9aa1-4bc1-82f0-b2c10d5a6a9e)...