0s autopkgtest [16:53:06]: starting date and time: 2024-03-16 16:53:06+0000 0s autopkgtest [16:53:06]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [16:53:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.cfxk4dhj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:zlib --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 --env=ADT_TEST_TRIGGERS=zlib/1:1.3.dfsg-3.1ubuntu1 -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-noble-arm64-r-bioc-rsamtools-20240316-165305-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 87s autopkgtest [16:54:33]: testbed dpkg architecture: arm64 87s autopkgtest [16:54:33]: testbed apt version: 2.7.12 87s autopkgtest [16:54:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 89s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 90s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 90s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 90s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 90s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 90s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 90s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 90s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 90s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 90s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 90s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 90s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 92s Fetched 9063 kB in 3s (3009 kB/s) 92s Reading package lists... 95s Reading package lists... 96s Building dependency tree... 96s Reading state information... 96s Calculating upgrade... 97s The following packages will be upgraded: 97s ubuntu-minimal ubuntu-standard zlib1g 97s 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 97s Need to get 83.0 kB of archives. 97s After this operation, 0 B of additional disk space will be used. 97s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g arm64 1:1.3.dfsg-3.1ubuntu1 [61.7 kB] 98s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 98s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 98s Fetched 83.0 kB in 0s (205 kB/s) 98s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 98s Preparing to unpack .../zlib1g_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 98s Unpacking zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) over (1:1.3.dfsg-3ubuntu1) ... 99s Setting up zlib1g:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 99s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 99s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 99s Unpacking ubuntu-minimal (1.536) over (1.535) ... 99s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 99s Unpacking ubuntu-standard (1.536) over (1.535) ... 99s Setting up ubuntu-minimal (1.536) ... 99s Setting up ubuntu-standard (1.536) ... 99s Processing triggers for libc-bin (2.39-0ubuntu2) ... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 101s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 101s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 101s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 102s Reading package lists... 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s Calculating upgrade... 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 104s Building dependency tree... 104s Reading state information... 105s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 107s autopkgtest [16:54:53]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 108s autopkgtest [16:54:54]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 110s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (dsc) [2354 B] 110s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (tar) [2463 kB] 110s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (diff) [6804 B] 110s gpgv: Signature made Thu Nov 30 10:32:59 2023 UTC 110s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 110s gpgv: issuer "tillea@rki.de" 110s gpgv: Can't check signature: No public key 110s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1.dsc: no acceptable signature found 111s autopkgtest [16:54:57]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1 111s autopkgtest [16:54:57]: build not needed 114s autopkgtest [16:55:00]: test pkg-r-autopkgtest: preparing testbed 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s Starting pkgProblemResolver with broken count: 0 120s Starting 2 pkgProblemResolver with broken count: 0 120s Done 120s The following additional packages will be installed: 120s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 120s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 120s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 120s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 120s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 120s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 120s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 120s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 120s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 120s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 120s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 120s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 120s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 120s libjs-highlight.js libjs-jquery libjs-jquery-datatables 120s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 121s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 121s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 121s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 121s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 121s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 121s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 121s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 121s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 121s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 121s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 121s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 121s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 121s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 121s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 121s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 121s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 121s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 121s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 121s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 121s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 121s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 121s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 121s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 121s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 121s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 121s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 121s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 121s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 121s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 121s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 121s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 121s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 121s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 121s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 121s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 121s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 121s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 121s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 121s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 121s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 121s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 121s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 121s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 121s Suggested packages: 121s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 121s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 121s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 121s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 121s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 121s libboost-context1.83-dev libboost-contract1.83-dev 121s libboost-coroutine1.83-dev libboost-date-time1.83-dev 121s libboost-exception1.83-dev libboost-fiber1.83-dev 121s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 121s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 121s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 121s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 121s libboost-numpy1.83-dev libboost-program-options1.83-dev 121s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 121s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 121s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 121s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 121s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 121s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 121s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 121s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 121s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 121s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 121s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 121s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 121s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 121s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 121s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 121s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 121s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 121s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 121s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 121s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 121s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 121s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 121s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 121s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 121s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 121s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 121s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 121s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 121s Recommended packages: 121s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 121s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 121s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 121s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 121s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 121s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 121s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 121s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 121s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 121s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 121s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 121s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 121s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 121s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 121s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 121s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 121s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 121s The following NEW packages will be installed: 121s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 121s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 121s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 121s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 121s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 121s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 121s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 121s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 121s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 121s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 121s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 121s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 121s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 121s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 121s libjs-highlight.js libjs-jquery libjs-jquery-datatables 121s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 121s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 121s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 121s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 121s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 121s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 121s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 121s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 121s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 121s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 121s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 121s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 121s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 121s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 121s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 121s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 121s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 121s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 121s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 121s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 121s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 121s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 121s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 121s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 121s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 121s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 121s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 121s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 121s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 121s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 121s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 121s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 121s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 121s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 121s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 121s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 121s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 121s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 121s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 121s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 121s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 121s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 121s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 121s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 121s 0 upgraded, 285 newly installed, 0 to remove and 0 not upgraded. 121s Need to get 426 MB/426 MB of archives. 121s After this operation, 1353 MB of additional disk space will be used. 121s Get:1 /tmp/autopkgtest.cM2DC4/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 121s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 121s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 121s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 121s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 121s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 121s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 121s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 121s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 121s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 121s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 122s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 122s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 122s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 122s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 122s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 122s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 122s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 122s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 122s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 122s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 122s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 122s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 122s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 122s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 122s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 122s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 122s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 122s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 122s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 123s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 123s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 123s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 123s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 123s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 123s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 123s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 123s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 123s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 123s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 123s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 123s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 123s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 123s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 123s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 123s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 123s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 123s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 123s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 123s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 123s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 123s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 123s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 123s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 123s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 123s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 123s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 123s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 124s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 124s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 124s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 124s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 124s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 124s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 124s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 124s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 124s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 124s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 124s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 124s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 124s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 124s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 124s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 124s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 124s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 124s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 124s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 124s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 124s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 124s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 124s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 124s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 124s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 124s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 124s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 124s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 124s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 124s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 124s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 124s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 124s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 124s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 124s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 124s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 124s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 124s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 124s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 124s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 124s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 124s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 124s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 124s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 124s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 125s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 125s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 125s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 125s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 125s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 125s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 125s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 125s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3.1ubuntu1 [894 kB] 125s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 125s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 125s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 125s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 125s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 125s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 125s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 125s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 125s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 125s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 125s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 125s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 125s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 125s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 125s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 125s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 125s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 125s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 125s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 125s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 125s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 125s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 125s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 125s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 125s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 125s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 126s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 126s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 126s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 126s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 126s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 126s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 126s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 127s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 127s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 127s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 127s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 127s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 127s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 127s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 127s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 127s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 127s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 127s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 127s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 127s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 127s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 127s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 127s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 127s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 127s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 127s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 127s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 127s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 127s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 127s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 127s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 127s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 127s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 127s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 127s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 127s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 127s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 127s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 127s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 127s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 127s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 127s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 127s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 127s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 127s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 127s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 127s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 128s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 128s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 128s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 128s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 128s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 128s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 128s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 128s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 128s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 128s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 128s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 128s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 129s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 129s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 129s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 129s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 129s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 129s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 129s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 129s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 129s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 129s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 129s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 129s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 129s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 129s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 129s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 129s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 129s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 129s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 129s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 129s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 129s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 129s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 129s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 129s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 129s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 129s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 129s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 130s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 130s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 130s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 130s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 130s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 130s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 130s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 130s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 130s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 130s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 130s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 130s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 130s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 130s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 130s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 130s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 130s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 130s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 130s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 130s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 130s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 130s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 130s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 130s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 130s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 130s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 131s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 131s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 134s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 134s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 134s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 134s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 134s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 134s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 134s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 134s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 134s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 134s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 134s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 134s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 134s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 134s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 134s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 134s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 134s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 134s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 135s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 135s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 135s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 135s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 135s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 135s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 135s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 135s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 135s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 135s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 135s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 135s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 135s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 135s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 135s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 135s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 137s Preconfiguring packages ... 137s Fetched 426 MB in 15s (28.9 MB/s) 137s Selecting previously unselected package libc-dev-bin. 137s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 137s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 137s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 137s Selecting previously unselected package linux-libc-dev:arm64. 137s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 137s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 137s Selecting previously unselected package libcrypt-dev:arm64. 137s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 137s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 137s Selecting previously unselected package libtirpc-dev:arm64. 137s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 137s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 137s Selecting previously unselected package libnsl-dev:arm64. 137s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 137s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 137s Selecting previously unselected package rpcsvc-proto. 137s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 137s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 137s Selecting previously unselected package libc6-dev:arm64. 138s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 138s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 138s Selecting previously unselected package libisl23:arm64. 138s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 138s Unpacking libisl23:arm64 (0.26-3) ... 138s Selecting previously unselected package libmpc3:arm64. 138s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 138s Unpacking libmpc3:arm64 (1.3.1-1) ... 138s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 138s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package cpp-13. 138s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package cpp-aarch64-linux-gnu. 138s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package cpp. 138s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking cpp (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package libcc1-0:arm64. 138s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgomp1:arm64. 138s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libitm1:arm64. 138s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libatomic1:arm64. 138s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libasan8:arm64. 138s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package liblsan0:arm64. 138s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libtsan2:arm64. 138s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libubsan1:arm64. 138s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libhwasan0:arm64. 139s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libgcc-13-dev:arm64. 139s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 139s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 139s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 139s Selecting previously unselected package gcc-13. 139s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 139s Selecting previously unselected package gcc-aarch64-linux-gnu. 139s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 139s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 139s Selecting previously unselected package gcc. 139s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 139s Unpacking gcc (4:13.2.0-7ubuntu1) ... 139s Selecting previously unselected package libstdc++-13-dev:arm64. 139s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 139s Selecting previously unselected package g++-13-aarch64-linux-gnu. 139s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-13. 140s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking g++-13 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-aarch64-linux-gnu. 140s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package g++. 140s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking g++ (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package build-essential. 140s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 140s Unpacking build-essential (12.10ubuntu1) ... 140s Selecting previously unselected package dctrl-tools. 140s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb 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Selecting previously unselected package fonts-font-awesome. 140s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 140s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 140s Selecting previously unselected package fonts-glyphicons-halflings. 141s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 141s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 141s Selecting previously unselected package fonts-lmodern. 141s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 141s Unpacking fonts-lmodern (2.005-1) ... 141s Selecting previously unselected package fonts-mathjax. 141s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 141s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 141s Selecting previously unselected package libgfortran5:arm64. 141s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 141s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 141s Selecting previously unselected package libgfortran-13-dev:arm64. 141s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 141s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gfortran-13. 141s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package gfortran-aarch64-linux-gnu. 141s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package gfortran. 141s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package icu-devtools. 141s Preparing to unpack .../049-icu-devtools_74.2-1ubuntu1_arm64.deb ... 141s Unpacking icu-devtools (74.2-1ubuntu1) ... 141s Selecting previously unselected package javascript-common. 141s Preparing to unpack .../050-javascript-common_11+nmu1_all.deb ... 141s Unpacking javascript-common (11+nmu1) ... 141s Selecting previously unselected package libio-string-perl. 141s Preparing to unpack .../051-libio-string-perl_1.08-4_all.deb ... 141s Unpacking libio-string-perl (1.08-4) ... 141s Selecting previously unselected package liblatex-tounicode-perl. 142s Preparing to unpack .../052-liblatex-tounicode-perl_0.54-2_all.deb ... 142s Unpacking liblatex-tounicode-perl (0.54-2) ... 142s Selecting previously unselected package libbibtex-parser-perl. 142s Preparing to unpack .../053-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 142s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 142s Selecting previously unselected package libblas3:arm64. 142s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 142s Unpacking libblas3:arm64 (3.12.0-3) ... 142s Selecting previously unselected package libblas-dev:arm64. 142s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 142s Unpacking libblas-dev:arm64 (3.12.0-3) ... 142s Selecting previously unselected package libboost1.83-dev:arm64. 142s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 142s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 144s Selecting previously unselected package libboost-dev:arm64. 144s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 144s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 144s Selecting previously unselected package libbz2-dev:arm64. 144s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 144s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 144s Selecting previously unselected package libpixman-1-0:arm64. 144s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 144s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 144s Selecting previously unselected package libxcb-render0:arm64. 144s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 144s Unpacking libxcb-render0:arm64 (1.15-1) ... 144s Selecting previously unselected package libxcb-shm0:arm64. 144s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 144s Unpacking libxcb-shm0:arm64 (1.15-1) ... 144s Selecting previously unselected package libxrender1:arm64. 144s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 144s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 144s Selecting previously unselected package libcairo2:arm64. 144s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 144s Unpacking libcairo2:arm64 (1.18.0-1) ... 144s Selecting previously unselected package libdatrie1:arm64. 144s Preparing to unpack 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... 145s Selecting previously unselected package libicu-dev:arm64. 145s Preparing to unpack .../070-libicu-dev_74.2-1ubuntu1_arm64.deb ... 145s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 145s Selecting previously unselected package libjpeg-turbo8:arm64. 145s Preparing to unpack .../071-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 145s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 145s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 145s Preparing to unpack .../072-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 145s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 145s Selecting previously unselected package libjpeg8:arm64. 145s Preparing to unpack .../073-libjpeg8_8c-2ubuntu11_arm64.deb ... 145s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 145s Selecting previously unselected package libjpeg8-dev:arm64. 145s Preparing to unpack .../074-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 145s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 145s Selecting previously unselected package libjpeg-dev:arm64. 146s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 146s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 146s Selecting previously unselected package libjs-bootstrap. 146s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 146s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 146s Selecting previously unselected package libjs-popper.js. 146s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 146s Unpacking libjs-popper.js (1.16.1+ds-6) ... 146s Selecting previously unselected package libjs-bootstrap4. 146s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 146s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 146s Selecting previously unselected package libjs-d3. 146s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 146s Unpacking libjs-d3 (3.5.17-4) ... 146s Selecting previously unselected package libjs-es5-shim. 146s Preparing to unpack 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.../090-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 147s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 147s Selecting previously unselected package libkpathsea6:arm64. 147s Preparing to unpack .../091-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 147s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 147s Selecting previously unselected package liblapack3:arm64. 147s Preparing to unpack .../092-liblapack3_3.12.0-3_arm64.deb ... 147s Unpacking liblapack3:arm64 (3.12.0-3) ... 147s Selecting previously unselected package liblapack-dev:arm64. 147s Preparing to unpack .../093-liblapack-dev_3.12.0-3_arm64.deb ... 147s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 147s Selecting previously unselected package liblerc4:arm64. 147s Preparing to unpack .../094-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 147s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 147s Selecting previously unselected package liblua5.4-0:arm64. 147s Preparing to unpack .../095-liblua5.4-0_5.4.6-3_arm64.deb 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... 147s Selecting previously unselected package libpangocairo-1.0-0:arm64. 148s Preparing to unpack .../101-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 148s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 148s Selecting previously unselected package libpaper1:arm64. 148s Preparing to unpack .../102-libpaper1_1.1.29_arm64.deb ... 148s Unpacking libpaper1:arm64 (1.1.29) ... 148s Selecting previously unselected package libpaper-utils. 148s Preparing to unpack .../103-libpaper-utils_1.1.29_arm64.deb ... 148s Unpacking libpaper-utils (1.1.29) ... 148s Selecting previously unselected package libpcre2-16-0:arm64. 148s Preparing to unpack .../104-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-32-0:arm64. 148s Preparing to unpack .../105-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-posix3:arm64. 148s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpcre2-dev:arm64. 148s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 148s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 148s Selecting previously unselected package libpkgconf3:arm64. 148s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 148s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 148s Selecting previously unselected package zlib1g-dev:arm64. 148s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3.1ubuntu1_arm64.deb ... 148s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3.1ubuntu1) ... 148s Selecting previously unselected package libpng-dev:arm64. 148s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 148s Unpacking libpng-dev:arm64 (1.6.43-1) ... 148s Selecting previously unselected package libpotrace0:arm64. 148s Preparing to unpack .../111-libpotrace0_1.16-2_arm64.deb ... 148s Unpacking libpotrace0:arm64 (1.16-2) ... 148s Selecting previously unselected package libptexenc1:arm64. 149s Preparing to unpack .../112-libptexenc1_2023.20230311.66589-9_arm64.deb ... 149s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 149s Selecting previously unselected package libreadline-dev:arm64. 149s Preparing to unpack .../113-libreadline-dev_8.2-3_arm64.deb ... 149s Unpacking libreadline-dev:arm64 (8.2-3) ... 149s Selecting previously unselected package libsharpyuv0:arm64. 149s Preparing to unpack .../114-libsharpyuv0_1.3.2-0.4_arm64.deb ... 149s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 149s Selecting previously unselected package libsm6:arm64. 149s Preparing to unpack .../115-libsm6_2%3a1.2.3-1build2_arm64.deb ... 149s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 149s Selecting previously unselected package libsynctex2:arm64. 149s Preparing to unpack .../116-libsynctex2_2023.20230311.66589-9_arm64.deb ... 149s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 149s Selecting previously unselected package libtcl8.6:arm64. 149s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 149s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 149s Selecting previously unselected package libteckit0:arm64. 149s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 149s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 149s Selecting previously unselected package libtexlua53-5:arm64. 149s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 149s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 149s Selecting previously unselected package libjbig0:arm64. 149s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 149s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 149s Selecting previously unselected package libwebp7:arm64. 150s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 150s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 150s Selecting previously unselected package libtiff6:arm64. 150s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 150s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 150s Selecting previously unselected package libxft2:arm64. 151s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 151s Unpacking libxft2:arm64 (2.3.6-1) ... 151s Selecting previously unselected package libxss1:arm64. 151s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 151s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 151s Selecting previously unselected package libtk8.6:arm64. 151s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 151s Unpacking libtk8.6:arm64 (8.6.13-2) ... 151s Selecting previously unselected package libxt6:arm64. 151s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 151s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 151s Selecting previously unselected package libxmu6:arm64. 151s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 151s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 151s Selecting previously unselected package libxpm4:arm64. 151s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 151s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 151s Selecting previously unselected package libxaw7:arm64. 151s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 151s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 151s Selecting previously unselected package libxi6:arm64. 151s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 151s Unpacking libxi6:arm64 (2:1.8.1-1) ... 151s Selecting previously unselected package libzzip-0-13:arm64. 151s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 151s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 151s Selecting previously unselected package zip. 151s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 151s Unpacking zip (3.0-13) ... 151s Selecting previously unselected package unzip. 152s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 152s Unpacking unzip (6.0-28ubuntu3) ... 152s Selecting previously unselected package xdg-utils. 152s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 152s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 152s Selecting previously unselected package r-base-core. 152s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 152s Unpacking r-base-core (4.3.2-1build1) ... 152s Selecting previously unselected package r-cran-littler. 152s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 152s Unpacking r-cran-littler (0.3.19-1) ... 152s Selecting previously unselected package littler. 152s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 152s Unpacking littler (0.3.19-1) ... 152s Selecting previously unselected package node-bootstrap-sass. 152s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 152s Unpacking node-bootstrap-sass (3.4.3-2) ... 152s Selecting previously unselected package node-html5shiv. 152s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 152s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 152s Selecting previously unselected package node-normalize.css. 153s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 153s Unpacking node-normalize.css (8.0.1-5) ... 153s Selecting previously unselected package pandoc-data. 153s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 153s Unpacking pandoc-data (3.1.3-1) ... 153s Selecting previously unselected package pandoc. 153s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 153s Unpacking pandoc (3.1.3+ds-2) ... 154s Selecting previously unselected package pkgconf-bin. 154s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 154s Unpacking pkgconf-bin (1.8.1-2) ... 154s Selecting previously unselected package pkgconf:arm64. 154s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 154s Unpacking pkgconf:arm64 (1.8.1-2) ... 154s Selecting previously unselected package pkg-config:arm64. 154s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 154s Unpacking pkg-config:arm64 (1.8.1-2) ... 154s Selecting previously unselected package liblzma-dev:arm64. 154s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 154s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 154s Selecting previously unselected package r-base-dev. 155s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 155s Unpacking r-base-dev (4.3.2-1build1) ... 155s Selecting previously unselected package pkg-r-autopkgtest. 155s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 155s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 155s Selecting previously unselected package r-bioc-biocgenerics. 156s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 156s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 156s Selecting previously unselected package r-bioc-biobase. 156s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 156s Unpacking r-bioc-biobase (2.62.0-1) ... 156s Selecting previously unselected package r-bioc-s4vectors. 157s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 157s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 157s Selecting previously unselected package r-bioc-iranges. 157s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 157s Unpacking r-bioc-iranges (2.36.0-1) ... 157s Selecting previously unselected package r-cran-dbi. 157s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 157s Unpacking r-cran-dbi (1.2.2-1) ... 157s Selecting previously unselected package r-cran-bit. 158s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 158s Unpacking r-cran-bit (4.0.5-1) ... 158s Selecting previously unselected package r-cran-bit64. 158s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 158s Unpacking r-cran-bit64 (4.0.5-1) ... 158s Selecting previously unselected package r-cran-rlang. 158s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 158s Unpacking r-cran-rlang (1.1.3-1) ... 158s Selecting previously unselected package r-cran-cli. 158s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 158s Unpacking r-cran-cli (3.6.2-1) ... 158s Selecting previously unselected package r-cran-glue. 158s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 158s Unpacking r-cran-glue (1.7.0-1) ... 158s Selecting previously unselected package r-cran-lifecycle. 158s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 158s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 158s Selecting previously unselected package r-cran-vctrs. 158s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 158s Unpacking r-cran-vctrs (0.6.5-1) ... 159s Selecting previously unselected package r-cran-blob. 159s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 159s Unpacking r-cran-blob (1.2.4-1) ... 159s Selecting previously unselected package r-cran-fastmap. 159s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 159s Unpacking r-cran-fastmap (1.1.1-1) ... 159s Selecting previously unselected package r-cran-cachem. 159s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 159s Unpacking r-cran-cachem (1.0.8-1) ... 159s Selecting previously unselected package r-cran-memoise. 159s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 159s Unpacking r-cran-memoise (2.0.1-1) ... 159s Selecting previously unselected package r-cran-pkgconfig. 159s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 159s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 159s Selecting previously unselected package r-cran-plogr. 159s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 159s Unpacking r-cran-plogr (0.2.0-3build1) ... 159s Selecting previously unselected package r-cran-cpp11. 159s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 159s Unpacking r-cran-cpp11 (0.4.7-1) ... 159s Selecting previously unselected package r-cran-rsqlite. 159s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 159s Unpacking r-cran-rsqlite (2.3.4-1) ... 159s Selecting previously unselected package r-cran-curl. 159s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 159s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 159s Selecting previously unselected package r-cran-jsonlite. 159s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 159s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 159s Selecting previously unselected package r-cran-mime. 159s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 159s Unpacking r-cran-mime (0.12-1) ... 159s Selecting previously unselected package r-cran-sys. 159s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 159s Unpacking r-cran-sys (3.4.2-1) ... 159s Selecting previously unselected package r-cran-askpass. 159s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 159s Unpacking r-cran-askpass (1.2.0-1) ... 159s Selecting previously unselected package r-cran-openssl. 160s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 160s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 160s Selecting previously unselected package r-cran-r6. 160s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 160s Unpacking r-cran-r6 (2.5.1-1) ... 160s Selecting previously unselected package r-cran-httr. 160s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 160s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 160s Selecting previously unselected package r-cran-png. 160s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 160s Unpacking r-cran-png (0.1-8-1) ... 160s Selecting previously unselected package r-bioc-zlibbioc. 160s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 160s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 160s Selecting previously unselected package r-bioc-xvector. 160s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 160s Unpacking r-bioc-xvector (0.42.0-1) ... 160s Selecting previously unselected package r-cran-bitops. 160s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 160s Unpacking r-cran-bitops (1.0-7-1) ... 160s Selecting previously unselected package r-cran-rcurl. 160s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 160s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 160s Selecting previously unselected package r-bioc-genomeinfodbdata. 160s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 160s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 160s Selecting previously unselected package r-bioc-genomeinfodb. 160s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 160s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 160s Selecting previously unselected package r-cran-crayon. 160s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 160s Unpacking r-cran-crayon (1.5.2-1) ... 160s Selecting previously unselected package r-bioc-biostrings. 161s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 161s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 161s Selecting previously unselected package r-bioc-keggrest. 161s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 161s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 161s Selecting previously unselected package r-bioc-annotationdbi. 161s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 161s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 161s Selecting previously unselected package r-cran-generics. 161s Preparing to unpack .../188-r-cran-generics_0.1.3-1_all.deb ... 161s Unpacking r-cran-generics (0.1.3-1) ... 161s Selecting previously unselected package r-cran-magrittr. 161s Preparing to unpack .../189-r-cran-magrittr_2.0.3-1_arm64.deb ... 161s Unpacking r-cran-magrittr (2.0.3-1) ... 161s Selecting previously unselected package r-cran-fansi. 161s Preparing to unpack .../190-r-cran-fansi_1.0.5-1_arm64.deb ... 161s Unpacking r-cran-fansi (1.0.5-1) ... 161s Selecting previously unselected package r-cran-utf8. 163s Preparing to unpack .../191-r-cran-utf8_1.2.4-1_arm64.deb ... 163s Unpacking r-cran-utf8 (1.2.4-1) ... 163s Selecting previously unselected package r-cran-pillar. 163s Preparing to unpack .../192-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 163s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 163s Selecting previously unselected package r-cran-tibble. 163s Preparing to unpack .../193-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 163s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 164s Selecting previously unselected package r-cran-withr. 164s Preparing to unpack .../194-r-cran-withr_2.5.0-1_all.deb ... 164s Unpacking r-cran-withr (2.5.0-1) ... 164s Selecting previously unselected package r-cran-tidyselect. 164s Preparing to unpack .../195-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 164s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 164s Selecting previously unselected package r-cran-dplyr. 164s Preparing to unpack .../196-r-cran-dplyr_1.1.4-1_arm64.deb ... 164s Unpacking r-cran-dplyr (1.1.4-1) ... 164s Selecting previously unselected package r-cran-purrr. 164s Preparing to unpack .../197-r-cran-purrr_1.0.2-1_arm64.deb ... 164s Unpacking r-cran-purrr (1.0.2-1) ... 164s Selecting previously unselected package r-cran-stringi. 164s Preparing to unpack .../198-r-cran-stringi_1.8.3-1_arm64.deb ... 164s Unpacking r-cran-stringi (1.8.3-1) ... 164s Selecting previously unselected package r-cran-stringr. 164s Preparing to unpack .../199-r-cran-stringr_1.5.1-1_all.deb ... 164s Unpacking r-cran-stringr (1.5.1-1) ... 164s Selecting previously unselected package r-cran-tidyr. 164s Preparing to unpack .../200-r-cran-tidyr_1.3.1-1_arm64.deb ... 164s Unpacking r-cran-tidyr (1.3.1-1) ... 164s Selecting previously unselected package r-cran-dbplyr. 164s Preparing to unpack .../201-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 164s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 164s Selecting previously unselected package r-cran-filelock. 164s Preparing to unpack .../202-r-cran-filelock_1.0.3-1_arm64.deb ... 164s Unpacking r-cran-filelock (1.0.3-1) ... 164s Selecting previously unselected package r-bioc-biocfilecache. 165s Preparing to unpack .../203-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 165s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 165s Selecting previously unselected package r-bioc-biocio. 165s Preparing to unpack .../204-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 165s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 165s Selecting previously unselected package r-cran-formatr. 165s Preparing to unpack .../205-r-cran-formatr_1.14-1_all.deb ... 165s Unpacking r-cran-formatr (1.14-1) ... 165s Selecting previously unselected package r-cran-lambda.r. 165s Preparing to unpack .../206-r-cran-lambda.r_1.2.4-2build1_all.deb ... 165s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 165s Selecting previously unselected package r-cran-futile.options. 165s Preparing to unpack .../207-r-cran-futile.options_1.0.1-3build1_all.deb ... 165s Unpacking r-cran-futile.options (1.0.1-3build1) ... 165s Selecting previously unselected package r-cran-futile.logger. 165s Preparing to unpack .../208-r-cran-futile.logger_1.4.3-4build1_all.deb ... 165s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 165s Selecting previously unselected package r-cran-snow. 165s Preparing to unpack .../209-r-cran-snow_1%3a0.4.4-2_all.deb ... 165s Unpacking r-cran-snow (1:0.4.4-2) ... 165s Selecting previously unselected package r-cran-codetools. 165s Preparing to unpack .../210-r-cran-codetools_0.2-19-1_all.deb ... 165s Unpacking r-cran-codetools (0.2-19-1) ... 165s Selecting previously unselected package r-cran-bh. 165s Preparing to unpack .../211-r-cran-bh_1.84.0-1_all.deb ... 165s Unpacking r-cran-bh (1.84.0-1) ... 165s Selecting previously unselected package r-bioc-biocparallel. 165s Preparing to unpack .../212-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 165s Unpacking r-bioc-biocparallel (1.36.0-1) ... 165s Selecting previously unselected package r-cran-base64enc. 165s Preparing to unpack .../213-r-cran-base64enc_0.1-3-3_arm64.deb ... 165s Unpacking r-cran-base64enc (0.1-3-3) ... 166s Selecting previously unselected package r-cran-digest. 166s Preparing to unpack .../214-r-cran-digest_0.6.34-1_arm64.deb ... 166s Unpacking r-cran-digest (0.6.34-1) ... 166s Selecting previously unselected package r-cran-ellipsis. 166s Preparing to unpack .../215-r-cran-ellipsis_0.3.2-2_arm64.deb ... 166s Unpacking r-cran-ellipsis (0.3.2-2) ... 166s Selecting previously unselected package r-cran-htmltools. 166s Preparing to unpack .../216-r-cran-htmltools_0.5.7-1_arm64.deb ... 166s Unpacking r-cran-htmltools (0.5.7-1) ... 166s Selecting previously unselected package r-cran-evaluate. 166s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ... 166s Unpacking r-cran-evaluate (0.23-1) ... 166s Selecting previously unselected package r-cran-xfun. 166s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 166s Unpacking r-cran-xfun (0.41+dfsg-1) ... 166s Selecting previously unselected package r-cran-highr. 166s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ... 166s Unpacking r-cran-highr (0.10+dfsg-1) ... 166s Selecting previously unselected package r-cran-yaml. 167s Preparing to unpack .../220-r-cran-yaml_2.3.8-1_arm64.deb ... 167s Unpacking r-cran-yaml (2.3.8-1) ... 168s Selecting previously unselected package libjs-mathjax. 168s Preparing to unpack .../221-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 168s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 168s Selecting previously unselected package r-cran-knitr. 168s Preparing to unpack .../222-r-cran-knitr_1.45+dfsg-1_all.deb ... 168s Unpacking r-cran-knitr (1.45+dfsg-1) ... 168s Selecting previously unselected package r-cran-jquerylib. 168s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 168s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 168s Selecting previously unselected package r-cran-fs. 168s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 168s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 168s Selecting previously unselected package r-cran-rappdirs. 168s Preparing to unpack .../225-r-cran-rappdirs_0.3.3-1_arm64.deb ... 168s Unpacking r-cran-rappdirs (0.3.3-1) ... 168s Selecting previously unselected package r-cran-sass. 168s Preparing to unpack .../226-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 168s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 168s Selecting previously unselected package r-cran-bslib. 168s Preparing to unpack .../227-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 168s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 168s Selecting previously unselected package r-cran-fontawesome. 169s Preparing to unpack .../228-r-cran-fontawesome_0.5.2-1_all.deb ... 169s Unpacking r-cran-fontawesome (0.5.2-1) ... 169s Selecting previously unselected package r-cran-tinytex. 169s Preparing to unpack .../229-r-cran-tinytex_0.49-1_all.deb ... 169s Unpacking r-cran-tinytex (0.49-1) ... 169s Selecting previously unselected package libjs-modernizr. 169s Preparing to unpack .../230-libjs-modernizr_2.6.2+ds1-5_all.deb ... 169s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 169s Selecting previously unselected package r-cran-pkgkitten. 169s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 169s Unpacking r-cran-pkgkitten (0.2.3-1) ... 169s Selecting previously unselected package r-cran-rcpp. 169s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 169s Unpacking r-cran-rcpp (1.0.12-1) ... 169s Selecting previously unselected package r-cran-later. 169s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 169s Unpacking r-cran-later (1.3.2+dfsg-1) ... 169s Selecting previously unselected package r-cran-promises. 169s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 169s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 169s Selecting previously unselected package r-cran-httpuv. 169s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 169s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 169s Selecting previously unselected package r-cran-xtable. 169s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 169s Unpacking r-cran-xtable (1:1.8-4-2) ... 169s Selecting previously unselected package r-cran-sourcetools. 169s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 169s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 169s Selecting previously unselected package r-cran-commonmark. 169s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 169s Unpacking r-cran-commonmark (1.9.1-1) ... 169s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 169s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 169s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 170s Selecting previously unselected package r-cran-shiny. 170s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 170s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 170s Selecting previously unselected package r-cran-rmarkdown. 170s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 170s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 170s Selecting previously unselected package r-cran-bookdown. 170s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 170s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 170s Selecting previously unselected package r-cran-biocmanager. 170s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 170s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 170s Selecting previously unselected package tex-common. 170s Preparing to unpack .../244-tex-common_6.18_all.deb ... 170s Unpacking tex-common (6.18) ... 170s Selecting previously unselected package t1utils. 170s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 170s Unpacking t1utils (1.41-4build2) ... 170s Selecting previously unselected package texlive-binaries. 170s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 170s Unpacking texlive-binaries (2023.20230311.66589-9) ... 170s Selecting previously unselected package texlive-base. 170s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 170s Unpacking texlive-base (2023.20240207-1) ... 172s Selecting previously unselected package texlive-latex-base. 172s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 172s Unpacking texlive-latex-base (2023.20240207-1) ... 172s Selecting previously unselected package texlive-bibtex-extra. 172s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 172s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 175s Selecting previously unselected package r-bioc-biocstyle. 175s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 175s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-xml. 175s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 175s Unpacking r-cran-xml (3.99-0.16.1-1) ... 175s Selecting previously unselected package r-cran-hms. 175s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 175s Unpacking r-cran-hms (1.1.3-1) ... 175s Selecting previously unselected package r-cran-prettyunits. 175s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 175s Unpacking r-cran-prettyunits (1.2.0-1) ... 175s Selecting previously unselected package r-cran-progress. 175s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 175s Unpacking r-cran-progress (1.2.3-1) ... 175s Selecting previously unselected package r-cran-xml2. 175s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 175s Unpacking r-cran-xml2 (1.3.6-1) ... 176s Selecting previously unselected package r-bioc-biomart. 176s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 176s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 176s Selecting previously unselected package r-cran-lattice. 176s Preparing to unpack .../257-r-cran-lattice_0.22-5-1_arm64.deb ... 176s Unpacking r-cran-lattice (0.22-5-1) ... 176s Selecting previously unselected package r-cran-matrix. 176s Preparing to unpack .../258-r-cran-matrix_1.6-5-1_arm64.deb ... 176s Unpacking r-cran-matrix (1.6-5-1) ... 176s Selecting previously unselected package r-cran-matrixstats. 176s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 176s Unpacking r-cran-matrixstats (1.2.0-1) ... 176s Selecting previously unselected package r-bioc-matrixgenerics. 176s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 176s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 176s Selecting previously unselected package r-cran-abind. 176s Preparing to unpack .../261-r-cran-abind_1.4-5-2_all.deb ... 176s Unpacking r-cran-abind (1.4-5-2) ... 176s Selecting previously unselected package r-bioc-s4arrays. 176s Preparing to unpack .../262-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 176s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 176s Selecting previously unselected package r-bioc-sparsearray. 176s Preparing to unpack .../263-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 176s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 176s Selecting previously unselected package r-bioc-delayedarray. 176s Preparing to unpack .../264-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 176s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 176s Selecting previously unselected package r-bioc-genomicranges. 176s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 176s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 176s Selecting previously unselected package r-bioc-summarizedexperiment. 177s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 177s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-rhtslib. 177s Preparing to unpack .../267-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 177s Selecting previously unselected package r-bioc-rsamtools. 177s Preparing to unpack .../268-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-genomicalignments. 177s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 177s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 177s Selecting previously unselected package r-cran-rjson. 177s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 177s Unpacking r-cran-rjson (0.2.21-1) ... 177s Selecting previously unselected package r-cran-restfulr. 177s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 177s Unpacking r-cran-restfulr (0.0.15-1) ... 177s Selecting previously unselected package r-bioc-rtracklayer. 177s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 177s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 177s Selecting previously unselected package r-bioc-genomicfeatures. 177s Preparing to unpack .../273-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 177s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 178s Selecting previously unselected package r-cran-hwriter. 178s Preparing to unpack .../274-r-cran-hwriter_1.3.2.1-1_all.deb ... 178s Unpacking r-cran-hwriter (1.3.2.1-1) ... 178s Selecting previously unselected package r-cran-jpeg. 178s Preparing to unpack .../275-r-cran-jpeg_0.1-10-1_arm64.deb ... 178s Unpacking r-cran-jpeg (0.1-10-1) ... 178s Selecting previously unselected package r-cran-rcolorbrewer. 178s Preparing to unpack .../276-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 178s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 178s Selecting previously unselected package r-cran-deldir. 178s Preparing to unpack .../277-r-cran-deldir_2.0-4-1_arm64.deb ... 178s Unpacking r-cran-deldir (2.0-4-1) ... 178s Selecting previously unselected package r-cran-rcppeigen. 178s Preparing to unpack .../278-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 178s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 178s Selecting previously unselected package r-cran-interp. 178s Preparing to unpack .../279-r-cran-interp_1.1-6-1_arm64.deb ... 178s Unpacking r-cran-interp (1.1-6-1) ... 178s Selecting previously unselected package r-cran-mass. 178s Preparing to unpack .../280-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 178s Unpacking r-cran-mass (7.3-60.0.1-1) ... 178s Selecting previously unselected package r-cran-latticeextra. 178s Preparing to unpack .../281-r-cran-latticeextra_0.6-30-1_all.deb ... 178s Unpacking r-cran-latticeextra 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libpaper-utils (1.1.29) ... 180s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 180s Setting up libjs-modernizr (2.6.2+ds1-5) ... 180s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 180s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 180s Setting up libjs-es5-shim (4.6.7-2) ... 180s Setting up tex-common (6.18) ... 181s update-language: texlive-base not installed and configured, doing nothing! 181s Setting up libio-string-perl (1.08-4) ... 181s Setting up zip (3.0-13) ... 181s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 181s Setting up libblas3:arm64 (3.12.0-3) ... 181s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 181s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 181s Setting up libpkgconf3:arm64 (1.8.1-2) ... 181s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 181s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 181s Setting up t1utils 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to provide /usr/bin/open (open) in auto mode 181s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 181s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 181s Setting up libblas-dev:arm64 (3.12.0-3) ... 181s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 181s Setting up dctrl-tools (2.24-3build2) ... 181s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 181s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 181s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 181s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 181s Setting up libpotrace0:arm64 (1.16-2) ... 181s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 181s Setting up libice6:arm64 (2:1.0.10-1build2) ... 181s Setting up liblapack3:arm64 (3.12.0-3) ... 181s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 181s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 181s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 181s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 181s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 181s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 181s Setting up pkgconf:arm64 (1.8.1-2) ... 181s Setting up libthai0:arm64 (0.1.29-2) ... 181s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 181s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 181s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 181s Setting up pandoc (3.1.3+ds-2) ... 181s Setting up liblapack-dev:arm64 (3.12.0-3) ... 181s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 181s Setting up pkg-config:arm64 (1.8.1-2) ... 181s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 181s 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186s Setting up r-cran-pkgkitten (0.2.3-1) ... 186s Setting up r-cran-jpeg (0.1-10-1) ... 186s Setting up texlive-base (2023.20240207-1) ... 187s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 187s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 187s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 188s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 188s Setting up r-cran-magrittr (2.0.3-1) ... 188s Setting up r-cran-rappdirs (0.3.3-1) ... 188s Setting up r-cran-filelock (1.0.3-1) ... 188s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 188s Setting up r-cran-littler (0.3.19-1) ... 188s Setting up r-cran-bh (1.84.0-1) ... 188s Setting up r-cran-fs (1.6.3+dfsg-1) ... 188s Setting up r-cran-rcpp (1.0.12-1) ... 188s Setting up r-cran-curl (5.2.0+dfsg-1) ... 188s Setting up r-cran-codetools (0.2-19-1) ... 188s Setting up r-bioc-biocgenerics (0.48.1-2) ... 188s Setting up r-cran-rlang (1.1.3-1) ... 188s Setting up r-cran-matrixstats (1.2.0-1) ... 188s Setting up littler (0.3.19-1) ... 188s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 188s Setting up r-cran-xfun (0.41+dfsg-1) ... 188s Setting up r-cran-sys (3.4.2-1) ... 188s Setting up r-cran-plogr (0.2.0-3build1) ... 188s Setting up r-cran-withr (2.5.0-1) ... 188s Setting up r-cran-mime (0.12-1) ... 188s Setting up r-cran-generics (0.1.3-1) ... 188s Setting up r-cran-base64enc (0.1-3-3) ... 188s Setting up r-cran-abind (1.4-5-2) ... 188s Setting up r-cran-digest (0.6.34-1) ... 188s Setting up r-cran-yaml (2.3.8-1) ... 188s Setting up r-cran-lambda.r (1.2.4-2build1) ... 188s Setting up r-cran-evaluate (0.23-1) ... 188s Setting up r-cran-dbi (1.2.2-1) ... 188s Setting up r-cran-highr (0.10+dfsg-1) ... 188s Setting up r-cran-prettyunits (1.2.0-1) ... 188s Setting up r-cran-fansi (1.0.5-1) ... 188s Setting up r-cran-mass (7.3-60.0.1-1) ... 188s 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up g++ (4:13.2.0-7ubuntu1) ... 188s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 188s Setting up r-cran-cachem (1.0.8-1) ... 188s Setting up build-essential (12.10ubuntu1) ... 188s Setting up r-bioc-iranges (2.36.0-1) ... 188s Setting up r-cran-rjson (0.2.21-1) ... 188s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 188s Setting up r-cran-restfulr (0.0.15-1) ... 188s Setting up r-cran-vctrs (0.6.5-1) ... 188s Setting up r-cran-rcppeigen (0.3.3.9.4-1) ... 188s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 188s Setting up r-cran-ellipsis (0.3.2-2) ... 188s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 188s Setting up r-base-dev (4.3.2-1build1) ... 188s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 188s Setting up r-cran-stringr (1.5.1-1) ... 188s Setting up r-bioc-biocparallel (1.36.0-1) ... 188s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 188s Setting up r-cran-xml2 (1.3.6-1) ... 188s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 188s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 188s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 188s Setting up texlive-bibtex-extra (2023.20240207-1) ... 188s Setting up r-cran-interp (1.1-6-1) ... 188s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 188s Setting up r-cran-httr (1.4.7+dfsg-1) ... 188s Setting up r-cran-hms (1.1.3-1) ... 188s Setting up r-cran-memoise (2.0.1-1) ... 188s Setting up r-cran-promises (1.2.1+dfsg-1) ... 188s Setting up r-cran-purrr (1.0.2-1) ... 188s Setting up r-cran-blob (1.2.4-1) ... 188s Setting up r-cran-htmltools (0.5.7-1) ... 188s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 188s Setting up r-bioc-xvector (0.42.0-1) ... 188s Setting up r-cran-sass (0.4.8+dfsg-1) ... 188s Setting up r-cran-dplyr (1.1.4-1) ... 188s Setting up r-cran-rsqlite (2.3.4-1) ... 188s Setting up r-cran-progress (1.2.3-1) ... 188s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 188s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 188s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 188s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 188s Setting up r-cran-fontawesome (0.5.2-1) ... 188s Setting up r-cran-latticeextra (0.6-30-1) ... 188s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 188s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 188s Setting up r-cran-tidyr (1.3.1-1) ... 188s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 188s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 188s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 188s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 188s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 188s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 188s Setting up r-bioc-annotationdbi (1.64.1-1) ... 188s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 188s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 188s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 188s Setting up r-bioc-genomicalignments (1.38.2-1) ... 188s Setting up r-cran-bookdown (0.37+dfsg-1) ... 188s Setting up r-bioc-rtracklayer (1.62.0-1) ... 188s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 188s Setting up r-bioc-shortread (1.60.0-2) ... 188s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 188s Setting up autopkgtest-satdep (0) ... 188s Processing triggers for man-db (2.12.0-3) ... 190s Processing triggers for install-info (7.1-3) ... 190s Processing triggers for libc-bin (2.39-0ubuntu2) ... 190s Processing triggers for tex-common (6.18) ... 191s Running updmap-sys. This may take some time... done. 191s Running mktexlsr /var/lib/texmf ... done. 191s Building format(s) --all. 229s This may take some time... done. 243s (Reading database ... 124912 files and directories currently installed.) 243s Removing autopkgtest-satdep (0) ... 243s autopkgtest [16:57:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 243s autopkgtest [16:57:09]: test pkg-r-autopkgtest: [----------------------- 244s Test: Try to load the R library Rsamtools 245s 245s R version 4.3.2 (2023-10-31) -- "Eye Holes" 245s Copyright (C) 2023 The R Foundation for Statistical Computing 245s Platform: aarch64-unknown-linux-gnu (64-bit) 245s 245s R is free software and comes with ABSOLUTELY NO WARRANTY. 245s You are welcome to redistribute it under certain conditions. 245s Type 'license()' or 'licence()' for distribution details. 245s 245s R is a collaborative project with many contributors. 245s Type 'contributors()' for more information and 245s 'citation()' on how to cite R or R packages in publications. 245s 245s Type 'demo()' for some demos, 'help()' for on-line help, or 245s 'help.start()' for an HTML browser interface to help. 245s Type 'q()' to quit R. 245s 245s > library('Rsamtools') 245s Loading required package: GenomeInfoDb 245s Loading required package: BiocGenerics 245s 245s Attaching package: ‘BiocGenerics’ 245s 245s The following objects are masked from ‘package:stats’: 245s 245s IQR, mad, sd, var, xtabs 245s 245s The following objects are masked from ‘package:base’: 245s 245s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 245s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 245s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 245s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 245s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 245s table, tapply, union, unique, unsplit, which.max, which.min 245s 245s Loading required package: S4Vectors 245s Loading required package: stats4 245s 245s Attaching package: ‘S4Vectors’ 245s 245s The following object is masked from ‘package:utils’: 245s 245s findMatches 245s 245s The following objects are masked from ‘package:base’: 245s 245s expand.grid, I, unname 245s 245s Loading required package: IRanges 246s Loading required package: GenomicRanges 247s Loading required package: Biostrings 247s Loading required package: XVector 248s 248s Attaching package: ‘Biostrings’ 248s 248s The following object is masked from ‘package:base’: 248s 248s strsplit 248s 248s > 248s > 248s Other tests are currently unsupported! 248s They will be progressively added. 248s autopkgtest [16:57:14]: test pkg-r-autopkgtest: -----------------------] 249s pkg-r-autopkgtest PASS 249s autopkgtest [16:57:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 249s autopkgtest [16:57:15]: @@@@@@@@@@@@@@@@@@@@ summary 249s pkg-r-autopkgtest PASS 261s Creating nova instance adt-noble-arm64-r-bioc-rsamtools-20240316-165305-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...