0s autopkgtest [13:47:30]: starting date and time: 2024-03-16 13:47:30+0000 0s autopkgtest [13:47:30]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:47:30]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.so9h9h8z/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-rsamtools-20240316-134729-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 63s autopkgtest [13:48:33]: testbed dpkg architecture: arm64 63s autopkgtest [13:48:33]: testbed apt version: 2.7.12 63s autopkgtest [13:48:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 64s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 64s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 64s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 64s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 64s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 64s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 64s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 64s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 64s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 64s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 64s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 64s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 66s Fetched 9092 kB in 2s (5457 kB/s) 66s Reading package lists... 69s Reading package lists... 69s Building dependency tree... 69s Reading state information... 69s Calculating upgrade... 69s The following packages will be REMOVED: 69s libssl3 69s The following NEW packages will be installed: 69s libssl3t64 69s The following packages have been kept back: 69s curl 70s The following packages will be upgraded: 70s openssl ubuntu-minimal ubuntu-standard 70s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 70s Need to get 2775 kB of archives. 70s After this operation, 72.7 kB of additional disk space will be used. 70s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 70s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 70s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 71s Fetched 2775 kB in 1s (3975 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 71s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 71s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 71s wget depends on libssl3 (>= 3.0.0). 71s u-boot-tools depends on libssl3 (>= 3.0.0). 71s tnftp depends on libssl3 (>= 3.0.0). 71s tcpdump depends on libssl3 (>= 3.0.0). 71s systemd-resolved depends on libssl3 (>= 3.0.0). 71s systemd depends on libssl3 (>= 3.0.0). 71s sudo depends on libssl3 (>= 3.0.0). 71s sbsigntool depends on libssl3 (>= 3.0.0). 71s rsync depends on libssl3 (>= 3.0.0). 71s python3-cryptography depends on libssl3 (>= 3.0.0). 71s openssh-server depends on libssl3 (>= 3.0.10). 71s openssh-client depends on libssl3 (>= 3.0.10). 71s mtd-utils depends on libssl3 (>= 3.0.0). 71s mokutil depends on libssl3 (>= 3.0.0). 71s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 71s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 71s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 71s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 71s libnvme1 depends on libssl3 (>= 3.0.0). 71s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 71s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 71s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 71s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 71s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 71s kmod depends on libssl3 (>= 3.0.0). 71s dhcpcd-base depends on libssl3 (>= 3.0.0). 71s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 71s 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 71s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 71s Selecting previously unselected package libssl3t64:arm64. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 71s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 71s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 71s Unpacking ubuntu-minimal (1.536) over (1.535) ... 71s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 71s Unpacking ubuntu-standard (1.536) over (1.535) ... 71s Setting up ubuntu-minimal (1.536) ... 71s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 71s Setting up ubuntu-standard (1.536) ... 71s Setting up openssl (3.0.13-0ubuntu1) ... 71s Processing triggers for man-db (2.12.0-3) ... 72s Processing triggers for libc-bin (2.39-0ubuntu2) ... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 73s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 74s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 74s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 74s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 74s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 75s Reading package lists... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Calculating upgrade... 77s The following packages have been kept back: 77s curl 77s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 80s autopkgtest [13:48:50]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 80s autopkgtest [13:48:50]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (dsc) [2473 B] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (tar) [2463 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rsamtools 2.18.0+dfsg-1build1 (diff) [6916 B] 82s gpgv: Signature made Sat Mar 16 06:57:45 2024 UTC 82s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 82s gpgv: issuer "steve.langasek@ubuntu.com" 82s gpgv: Can't check signature: No public key 82s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1build1.dsc: no acceptable signature found 83s autopkgtest [13:48:53]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1build1 83s autopkgtest [13:48:53]: build not needed 85s autopkgtest [13:48:55]: test pkg-r-autopkgtest: preparing testbed 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 86s Starting pkgProblemResolver with broken count: 0 86s Starting 2 pkgProblemResolver with broken count: 0 86s Done 87s The following additional packages will be installed: 87s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 87s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 87s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 87s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 87s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 87s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 87s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 87s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 87s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 87s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 87s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 87s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 87s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 87s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 87s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 87s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 87s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 87s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 87s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 87s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 87s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 87s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 87s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 87s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 87s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 87s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 87s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 87s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 87s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 87s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 87s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 87s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 87s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 87s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 87s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 87s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 87s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 87s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 87s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 87s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 87s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 87s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 87s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 87s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 87s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 87s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 87s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 87s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 87s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 87s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 87s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 87s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 87s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 87s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 87s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 87s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 87s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 87s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 87s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 87s Suggested packages: 87s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 87s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 87s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 87s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 87s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 87s libboost-context1.83-dev libboost-contract1.83-dev 87s libboost-coroutine1.83-dev libboost-date-time1.83-dev 87s libboost-exception1.83-dev libboost-fiber1.83-dev 87s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 87s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 87s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 87s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 87s libboost-numpy1.83-dev libboost-program-options1.83-dev 87s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 87s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 87s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 87s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 87s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 87s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 87s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 87s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 87s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 87s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 87s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 87s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 87s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 87s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 87s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 87s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 87s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 87s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 87s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 87s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 87s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 87s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 87s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 87s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 87s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 87s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 87s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 87s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 87s Recommended packages: 87s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 87s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 87s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 87s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 87s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 87s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 87s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 87s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 87s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 87s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 87s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 87s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 87s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 87s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 87s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 87s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 87s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 87s The following packages will be REMOVED: 87s libcurl4 libpsl5 87s The following NEW packages will be installed: 87s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 87s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 87s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 87s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 87s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 87s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 87s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 87s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 87s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 87s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 87s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 87s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 87s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 87s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 87s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 87s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 87s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 87s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 87s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 87s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 87s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 87s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 87s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 87s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 87s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 87s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 87s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 87s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 87s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 87s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 87s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 87s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 87s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 87s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 87s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 87s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 87s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 87s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 87s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 87s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 87s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 87s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 87s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 87s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 87s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 87s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 87s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 87s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 87s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 87s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 87s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 87s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 87s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 87s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 87s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 87s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 87s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 87s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 87s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 87s The following packages will be upgraded: 87s curl 87s 1 upgraded, 287 newly installed, 2 to remove and 0 not upgraded. 87s Need to get 427 MB/427 MB of archives. 87s After this operation, 1353 MB of additional disk space will be used. 87s Get:1 /tmp/autopkgtest.swuO2h/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [792 B] 87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 88s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 88s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 88s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 88s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 88s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 88s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 88s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 88s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 88s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 88s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 88s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 88s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 88s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 88s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 88s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 88s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 88s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 88s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 88s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 88s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 88s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 88s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 88s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 88s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 88s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 89s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 89s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 89s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 89s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 89s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 89s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 89s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 89s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 89s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 89s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 89s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 89s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 89s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 89s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 89s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 89s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 89s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 89s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 89s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 89s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 89s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 89s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 90s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 90s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 90s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 90s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 90s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 90s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 90s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 90s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 90s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 90s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 90s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 90s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 90s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 90s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 90s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 90s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 90s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 90s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 90s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 90s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 90s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 90s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 90s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 90s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 90s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 90s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 90s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 90s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 90s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 90s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 90s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 90s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 90s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 90s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 90s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 91s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 91s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 91s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 91s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 91s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 91s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 91s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 91s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 91s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 91s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 91s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 91s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 91s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 91s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 91s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 91s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 91s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 91s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 91s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 91s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 91s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 91s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 91s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 91s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 91s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 91s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 91s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 91s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 91s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 91s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 91s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 91s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 91s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 91s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 91s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 91s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 92s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 92s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 92s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 92s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 92s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 92s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 92s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 92s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 92s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 92s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 92s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 92s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 92s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 92s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 92s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 92s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 92s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 92s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 92s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 92s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 92s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 92s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 92s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 92s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 92s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 92s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 93s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 93s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 93s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 93s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 93s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 93s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 93s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 93s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 93s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 93s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 93s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 93s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 93s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 93s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 93s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 93s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 94s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 94s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 94s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 94s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 94s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 94s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 94s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 94s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 94s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 94s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 94s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 94s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 94s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 94s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 94s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 94s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 94s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 94s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 94s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 94s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 94s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 94s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 94s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 94s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 94s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 94s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 94s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 95s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 95s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 95s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 95s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 95s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 95s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 95s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 95s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 95s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 95s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 95s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 95s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 95s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 95s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 95s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 95s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 95s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 95s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 95s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 95s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 95s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 95s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 95s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 95s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 95s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 96s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 96s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 96s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 96s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 96s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 96s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 96s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 96s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 96s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 96s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 96s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 96s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 96s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 96s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 96s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 96s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 96s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 96s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 96s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 96s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 96s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 96s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 96s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 96s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 96s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 96s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 96s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 96s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 96s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 96s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 96s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 96s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 96s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 96s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 96s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 96s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 96s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 97s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 97s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 99s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 99s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 99s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 99s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 99s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 99s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 99s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 99s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 99s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 99s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 99s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 99s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 99s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 99s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 99s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 99s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 99s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 99s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 99s Get:273 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 99s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 99s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 99s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 99s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 99s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 99s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 99s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 99s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 99s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 99s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 99s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 99s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 99s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 100s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 100s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 101s Preconfiguring packages ... 101s Fetched 427 MB in 13s (33.9 MB/s) 101s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 101s wget depends on libpsl5 (>= 0.16.0). 101s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 101s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 101s 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 101s Removing libpsl5:arm64 (0.21.2-1build1) ... 102s Selecting previously unselected package libpsl5t64:arm64. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 102s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 102s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 102s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 102s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 102s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 102s Selecting previously unselected package libcurl4t64:arm64. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 102s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 102s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 102s Selecting previously unselected package libc-dev-bin. 102s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 102s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 103s Selecting previously unselected package linux-libc-dev:arm64. 103s Preparing to unpack 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libc6-dev:arm64 (2.39-0ubuntu2) ... 104s Selecting previously unselected package libisl23:arm64. 104s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 104s Unpacking libisl23:arm64 (0.26-3) ... 105s Selecting previously unselected package libmpc3:arm64. 105s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 105s Unpacking libmpc3:arm64 (1.3.1-1) ... 105s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 105s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 105s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 105s Selecting previously unselected package cpp-13. 105s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 105s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 105s Selecting previously unselected package cpp-aarch64-linux-gnu. 106s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 106s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 106s Selecting previously unselected package cpp. 106s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 106s Unpacking cpp (4:13.2.0-7ubuntu1) ... 106s Selecting previously unselected package libcc1-0:arm64. 106s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 106s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 106s Selecting previously unselected package libgomp1:arm64. 106s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 106s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 106s Selecting previously unselected package libitm1:arm64. 106s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 106s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 106s Selecting previously unselected package libatomic1:arm64. 106s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 106s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 106s Selecting previously unselected package libasan8:arm64. 106s 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to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 106s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 106s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 106s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 106s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 107s Selecting previously unselected package gcc-13. 107s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 107s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 107s Selecting previously unselected package gcc-aarch64-linux-gnu. 107s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 107s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 107s Selecting previously unselected package gcc. 107s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 107s Unpacking gcc (4:13.2.0-7ubuntu1) ... 107s Selecting previously unselected package libstdc++-13-dev:arm64. 107s Preparing to unpack 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 108s Unpacking build-essential (12.10ubuntu1) ... 108s Selecting previously unselected package dctrl-tools. 108s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 108s Unpacking dctrl-tools (2.24-3build2) ... 108s Selecting previously unselected package fonts-dejavu-mono. 109s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 109s Unpacking fonts-dejavu-mono (2.37-8) ... 109s Selecting previously unselected package fonts-dejavu-core. 109s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 109s Unpacking fonts-dejavu-core (2.37-8) ... 109s Selecting previously unselected package fontconfig-config. 109s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 109s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 109s Selecting previously unselected package libfontconfig1:arm64. 109s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 109s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 109s Selecting previously unselected package fontconfig. 109s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 109s Unpacking fontconfig (2.15.0-1ubuntu1) ... 109s Selecting previously unselected package fonts-font-awesome. 109s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 109s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 109s Selecting previously unselected package fonts-glyphicons-halflings. 109s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 109s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 109s Selecting previously unselected package fonts-lmodern. 109s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 109s Unpacking fonts-lmodern (2.005-1) ... 109s Selecting previously unselected package fonts-mathjax. 109s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 109s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 110s Selecting previously unselected package libgfortran5:arm64. 110s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 110s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 110s Selecting previously unselected package libgfortran-13-dev:arm64. 110s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 110s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 110s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 110s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 110s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 110s Selecting previously unselected package gfortran-13. 110s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 110s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 110s Selecting previously unselected package gfortran-aarch64-linux-gnu. 110s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 110s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 110s Selecting previously unselected package gfortran. 110s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 110s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 110s Selecting previously unselected package icu-devtools. 110s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 110s Unpacking icu-devtools (74.2-1ubuntu1) ... 110s Selecting previously unselected package javascript-common. 110s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 110s Unpacking javascript-common (11+nmu1) ... 110s Selecting previously unselected package libio-string-perl. 110s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 110s Unpacking libio-string-perl (1.08-4) ... 110s Selecting previously unselected package liblatex-tounicode-perl. 110s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 110s Unpacking liblatex-tounicode-perl (0.54-2) ... 110s Selecting previously unselected package libbibtex-parser-perl. 110s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 110s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 110s Selecting previously unselected package libblas3:arm64. 110s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 110s Unpacking libblas3:arm64 (3.12.0-3) ... 110s Selecting previously unselected package libblas-dev:arm64. 110s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 110s Unpacking libblas-dev:arm64 (3.12.0-3) ... 110s Selecting previously unselected package libboost1.83-dev:arm64. 110s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 110s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 112s Selecting previously unselected package libboost-dev:arm64. 112s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 112s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 112s Selecting previously unselected package libbz2-dev:arm64. 112s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 112s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 112s Selecting previously unselected package libpixman-1-0:arm64. 112s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 112s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 112s Selecting previously unselected package libxcb-render0:arm64. 112s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 112s Unpacking libxcb-render0:arm64 (1.15-1) ... 112s Selecting previously unselected package libxcb-shm0:arm64. 112s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 112s Unpacking libxcb-shm0:arm64 (1.15-1) ... 112s Selecting previously unselected package libxrender1:arm64. 112s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 112s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 112s Selecting previously unselected package libcairo2:arm64. 112s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 112s Unpacking libcairo2:arm64 (1.18.0-1) ... 112s Selecting previously unselected package libdatrie1:arm64. 112s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 112s Unpacking libdatrie1:arm64 (0.2.13-3) ... 112s Selecting previously unselected package libdeflate0:arm64. 112s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 112s Unpacking libdeflate0:arm64 (1.19-1) ... 112s Selecting previously unselected package libgraphite2-3:arm64. 112s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 112s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 112s Selecting previously unselected package libharfbuzz0b:arm64. 112s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 112s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 112s Selecting previously unselected package x11-common. 112s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 112s Unpacking x11-common (1:7.7+23ubuntu2) ... 112s Selecting previously unselected package libice6:arm64. 112s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 112s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 112s Selecting previously unselected package libicu-dev:arm64. 112s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 112s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 113s Selecting previously unselected package libjpeg-turbo8:arm64. 113s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 113s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 113s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 113s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 113s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 113s Selecting previously unselected package libjpeg8:arm64. 113s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 113s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 113s Selecting previously unselected package libjpeg8-dev:arm64. 113s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 113s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 113s Selecting previously unselected package libjpeg-dev:arm64. 113s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 113s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 113s Selecting previously unselected package libjs-bootstrap. 113s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 113s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 113s Selecting previously unselected package libjs-popper.js. 113s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 113s Unpacking libjs-popper.js (1.16.1+ds-6) ... 113s Selecting previously unselected package libjs-bootstrap4. 113s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 113s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 113s Selecting previously unselected package libjs-d3. 113s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 113s Unpacking libjs-d3 (3.5.17-4) ... 113s Selecting previously unselected package libjs-es5-shim. 113s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 113s Unpacking libjs-es5-shim (4.6.7-2) ... 113s Selecting previously unselected package libjs-highlight.js. 113s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 113s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 113s Selecting previously unselected package libjs-jquery. 113s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 113s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 113s Selecting previously unselected package libjs-jquery-datatables. 113s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 113s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 113s Selecting previously unselected package libjs-sifter.js. 113s Preparing to unpack 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.../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 113s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 113s Selecting previously unselected package libjs-prettify. 113s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 113s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 113s Selecting previously unselected package libkpathsea6:arm64. 113s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 113s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 113s Selecting previously unselected package liblapack3:arm64. 114s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 114s Unpacking liblapack3:arm64 (3.12.0-3) ... 114s Selecting previously unselected package liblapack-dev:arm64. 114s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 114s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 114s Selecting previously unselected package liblerc4:arm64. 114s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 114s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 114s Selecting previously unselected package liblua5.4-0:arm64. 114s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 114s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 114s Selecting previously unselected package libncurses-dev:arm64. 114s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 114s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 114s Selecting previously unselected package libthai-data. 114s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 114s Unpacking libthai-data (0.1.29-2) ... 114s Selecting previously unselected package libthai0:arm64. 114s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 114s Unpacking libthai0:arm64 (0.1.29-2) ... 114s Selecting previously unselected package libpango-1.0-0:arm64. 114s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 114s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 114s Selecting previously unselected package libpangoft2-1.0-0:arm64. 114s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 114s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 114s Selecting previously unselected package libpangocairo-1.0-0:arm64. 114s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 114s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 114s Selecting previously unselected package libpaper1:arm64. 114s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 114s Unpacking libpaper1:arm64 (1.1.29) ... 114s Selecting previously unselected package libpaper-utils. 114s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 114s Unpacking libpaper-utils (1.1.29) ... 114s Selecting previously unselected package libpcre2-16-0:arm64. 114s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 114s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 114s Selecting previously unselected package libpcre2-32-0:arm64. 114s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 114s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 114s Selecting previously unselected package libpcre2-posix3:arm64. 114s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 114s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 114s Selecting previously unselected package libpcre2-dev:arm64. 114s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 114s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 115s Selecting previously unselected package libpkgconf3:arm64. 115s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 115s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 115s Selecting previously unselected package zlib1g-dev:arm64. 115s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 115s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 115s Selecting previously unselected package libpng-dev:arm64. 115s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 115s Unpacking libpng-dev:arm64 (1.6.43-1) ... 115s Selecting previously unselected package libpotrace0:arm64. 115s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 115s Unpacking libpotrace0:arm64 (1.16-2) ... 115s Selecting previously unselected package libptexenc1:arm64. 115s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 115s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 115s Selecting previously unselected package libreadline-dev:arm64. 115s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 115s Unpacking libreadline-dev:arm64 (8.2-3) ... 115s Selecting previously unselected package libsharpyuv0:arm64. 115s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 115s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 115s Selecting previously unselected package libsm6:arm64. 115s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 115s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 115s Selecting previously unselected package libsynctex2:arm64. 115s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 115s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 115s Selecting previously unselected package libtcl8.6:arm64. 115s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 115s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 115s Selecting previously unselected package libteckit0:arm64. 115s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 115s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 115s Selecting previously unselected package libtexlua53-5:arm64. 115s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 115s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 115s Selecting previously unselected package libjbig0:arm64. 115s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 115s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 115s Selecting previously unselected package libwebp7:arm64. 115s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 115s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 115s Selecting previously unselected package libtiff6:arm64. 115s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 115s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 115s Selecting previously unselected package libxft2:arm64. 115s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 115s Unpacking libxft2:arm64 (2.3.6-1) ... 115s Selecting previously unselected package libxss1:arm64. 115s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 115s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 115s Selecting previously unselected package libtk8.6:arm64. 115s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 115s Unpacking libtk8.6:arm64 (8.6.13-2) ... 115s Selecting previously unselected package libxt6:arm64. 115s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 115s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 115s Selecting previously unselected package libxmu6:arm64. 115s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 115s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 115s Selecting previously unselected package libxpm4:arm64. 115s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 115s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 115s Selecting previously unselected package libxaw7:arm64. 115s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 115s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 115s Selecting previously unselected package libxi6:arm64. 115s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 115s Unpacking libxi6:arm64 (2:1.8.1-1) ... 115s Selecting previously unselected package libzzip-0-13:arm64. 115s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 115s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 115s Selecting previously unselected package zip. 115s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 115s Unpacking zip (3.0-13) ... 115s Selecting previously unselected package unzip. 115s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 115s Unpacking unzip (6.0-28ubuntu3) ... 115s Selecting previously unselected package xdg-utils. 115s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 115s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 115s Selecting previously unselected package r-base-core. 115s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 115s Unpacking r-base-core (4.3.2-1build1) ... 116s Selecting previously unselected package r-cran-littler. 116s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 116s Unpacking r-cran-littler (0.3.19-1) ... 116s Selecting previously unselected package littler. 116s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 116s Unpacking littler (0.3.19-1) ... 116s Selecting previously unselected package node-bootstrap-sass. 116s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 116s Unpacking node-bootstrap-sass (3.4.3-2) ... 116s Selecting previously unselected package node-html5shiv. 116s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 116s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 116s Selecting previously unselected package node-normalize.css. 116s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 116s Unpacking node-normalize.css (8.0.1-5) ... 116s Selecting previously unselected package pandoc-data. 116s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 116s Unpacking pandoc-data (3.1.3-1) ... 116s Selecting previously unselected package pandoc. 116s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 116s Unpacking pandoc (3.1.3+ds-2) ... 117s Selecting previously unselected package pkgconf-bin. 117s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 117s Unpacking pkgconf-bin (1.8.1-2) ... 117s Selecting previously unselected package pkgconf:arm64. 117s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 117s Unpacking pkgconf:arm64 (1.8.1-2) ... 117s Selecting previously unselected package pkg-config:arm64. 117s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 117s Unpacking pkg-config:arm64 (1.8.1-2) ... 117s Selecting previously unselected package liblzma-dev:arm64. 117s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 117s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 117s Selecting previously unselected package r-base-dev. 117s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 117s Unpacking r-base-dev (4.3.2-1build1) ... 117s Selecting previously unselected package pkg-r-autopkgtest. 117s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 117s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 117s Selecting previously unselected package r-bioc-biocgenerics. 117s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 117s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 117s Selecting previously unselected package r-bioc-biobase. 117s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 117s Unpacking r-bioc-biobase (2.62.0-1) ... 117s Selecting previously unselected package r-bioc-s4vectors. 117s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 117s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 117s Selecting previously unselected package r-bioc-iranges. 117s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 117s Unpacking r-bioc-iranges (2.36.0-1) ... 117s Selecting previously unselected package r-cran-dbi. 117s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 117s Unpacking r-cran-dbi (1.2.2-1) ... 118s Selecting previously unselected package r-cran-bit. 118s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 118s Unpacking r-cran-bit (4.0.5-1) ... 118s Selecting previously unselected package r-cran-bit64. 118s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 118s Unpacking r-cran-bit64 (4.0.5-1) ... 118s Selecting previously unselected package r-cran-rlang. 118s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 118s Unpacking r-cran-rlang (1.1.3-1) ... 118s Selecting previously unselected package r-cran-cli. 118s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 118s Unpacking r-cran-cli (3.6.2-1) ... 118s Selecting previously unselected package r-cran-glue. 118s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 118s Unpacking r-cran-glue (1.7.0-1) ... 118s Selecting previously unselected package r-cran-lifecycle. 118s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 118s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 118s Selecting previously unselected package r-cran-vctrs. 118s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 118s Unpacking r-cran-vctrs (0.6.5-1) ... 118s Selecting previously unselected package r-cran-blob. 118s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 118s Unpacking r-cran-blob (1.2.4-1) ... 118s Selecting previously unselected package r-cran-fastmap. 118s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 118s Unpacking r-cran-fastmap (1.1.1-1) ... 118s Selecting previously unselected package r-cran-cachem. 118s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 118s Unpacking r-cran-cachem (1.0.8-1) ... 118s Selecting previously unselected package r-cran-memoise. 118s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 118s Unpacking r-cran-memoise (2.0.1-1) ... 118s Selecting previously unselected package r-cran-pkgconfig. 118s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 118s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 118s Selecting previously unselected package r-cran-plogr. 118s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 118s Unpacking r-cran-plogr (0.2.0-3build1) ... 118s Selecting previously unselected package r-cran-cpp11. 118s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 118s Unpacking r-cran-cpp11 (0.4.7-1) ... 118s Selecting previously unselected package r-cran-rsqlite. 119s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 119s Unpacking r-cran-rsqlite (2.3.4-1) ... 119s Selecting previously unselected package r-cran-curl. 119s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 119s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 119s Selecting previously unselected package r-cran-jsonlite. 119s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 119s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 119s Selecting previously unselected package r-cran-mime. 119s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 119s Unpacking r-cran-mime (0.12-1) ... 119s Selecting previously unselected package r-cran-sys. 119s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 119s Unpacking r-cran-sys (3.4.2-1) ... 119s Selecting previously unselected package r-cran-askpass. 119s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 119s Unpacking r-cran-askpass (1.2.0-1) ... 119s Selecting previously unselected package r-cran-openssl. 119s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 119s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 119s Selecting previously unselected package r-cran-r6. 119s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 119s Unpacking r-cran-r6 (2.5.1-1) ... 119s Selecting previously unselected package r-cran-httr. 119s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 119s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 119s Selecting previously unselected package r-cran-png. 119s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 119s Unpacking r-cran-png (0.1-8-1) ... 119s Selecting previously unselected package r-bioc-zlibbioc. 119s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 119s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 119s Selecting previously unselected package r-bioc-xvector. 119s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 119s Unpacking r-bioc-xvector (0.42.0-1) ... 119s Selecting previously unselected package r-cran-bitops. 119s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 119s Unpacking r-cran-bitops (1.0-7-1) ... 119s Selecting previously unselected package r-cran-rcurl. 119s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 119s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 119s Selecting previously unselected package r-bioc-genomeinfodbdata. 119s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 119s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 119s Selecting previously unselected package r-bioc-genomeinfodb. 119s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 119s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 119s Selecting previously unselected package r-cran-crayon. 119s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 119s Unpacking r-cran-crayon (1.5.2-1) ... 119s Selecting previously unselected package r-bioc-biostrings. 119s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 119s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 120s Selecting previously unselected package r-bioc-keggrest. 120s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 120s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 120s Selecting previously unselected package r-bioc-annotationdbi. 120s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 120s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 120s Selecting previously unselected package r-cran-generics. 120s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 120s Unpacking r-cran-generics (0.1.3-1) ... 120s Selecting previously unselected package r-cran-magrittr. 120s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 120s Unpacking r-cran-magrittr (2.0.3-1) ... 120s Selecting previously unselected package r-cran-fansi. 120s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 120s Unpacking r-cran-fansi (1.0.5-1) ... 120s Selecting previously unselected package r-cran-utf8. 120s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 120s Unpacking r-cran-utf8 (1.2.4-1) ... 120s Selecting previously unselected package r-cran-pillar. 120s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 120s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 120s Selecting previously unselected package r-cran-tibble. 120s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 120s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 120s Selecting previously unselected package r-cran-withr. 120s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 120s Unpacking r-cran-withr (2.5.0-1) ... 120s Selecting previously unselected package r-cran-tidyselect. 120s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 120s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 120s Selecting previously unselected package r-cran-dplyr. 120s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 120s Unpacking r-cran-dplyr (1.1.4-1) ... 120s Selecting previously unselected package r-cran-purrr. 120s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 120s Unpacking r-cran-purrr (1.0.2-1) ... 120s Selecting previously unselected package r-cran-stringi. 120s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 120s Unpacking r-cran-stringi (1.8.3-1) ... 120s Selecting previously unselected package r-cran-stringr. 120s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 120s Unpacking r-cran-stringr (1.5.1-1) ... 120s Selecting previously unselected package r-cran-tidyr. 120s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 120s Unpacking r-cran-tidyr (1.3.1-1) ... 120s Selecting previously unselected package r-cran-dbplyr. 120s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 120s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 120s Selecting previously unselected package r-cran-filelock. 120s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 120s Unpacking r-cran-filelock (1.0.3-1) ... 120s Selecting previously unselected package r-bioc-biocfilecache. 120s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 120s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 120s Selecting previously unselected package r-bioc-biocio. 120s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 120s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 121s Selecting previously unselected package r-cran-formatr. 121s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 121s Unpacking r-cran-formatr (1.14-1) ... 121s Selecting previously unselected package r-cran-lambda.r. 121s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 121s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 121s Selecting previously unselected package r-cran-futile.options. 121s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 121s Unpacking r-cran-futile.options (1.0.1-3build1) ... 121s Selecting previously unselected package r-cran-futile.logger. 121s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 121s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 121s Selecting previously unselected package r-cran-snow. 121s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 121s Unpacking r-cran-snow (1:0.4.4-2) ... 121s Selecting previously unselected package r-cran-codetools. 121s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 121s Unpacking r-cran-codetools (0.2-19-1) ... 121s Selecting previously unselected package r-cran-bh. 121s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 121s Unpacking r-cran-bh (1.84.0-1) ... 121s Selecting previously unselected package r-bioc-biocparallel. 121s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 121s Unpacking r-bioc-biocparallel (1.36.0-1) ... 121s Selecting previously unselected package r-cran-base64enc. 121s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 121s Unpacking r-cran-base64enc (0.1-3-3) ... 121s Selecting previously unselected package r-cran-digest. 121s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 121s Unpacking r-cran-digest (0.6.34-1) ... 121s Selecting previously unselected package r-cran-ellipsis. 121s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 121s Unpacking r-cran-ellipsis (0.3.2-2) ... 121s Selecting previously unselected package r-cran-htmltools. 121s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 121s Unpacking r-cran-htmltools (0.5.7-1) ... 121s Selecting previously unselected package r-cran-evaluate. 121s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 121s Unpacking r-cran-evaluate (0.23-1) ... 121s Selecting previously unselected package r-cran-xfun. 121s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 121s Unpacking r-cran-xfun (0.41+dfsg-1) ... 121s Selecting previously unselected package r-cran-highr. 121s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 121s Unpacking r-cran-highr (0.10+dfsg-1) ... 121s Selecting previously unselected package r-cran-yaml. 121s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 121s Unpacking r-cran-yaml (2.3.8-1) ... 121s Selecting previously unselected package libjs-mathjax. 121s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 121s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 122s Selecting previously unselected package r-cran-knitr. 122s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 122s Unpacking r-cran-knitr (1.45+dfsg-1) ... 122s Selecting previously unselected package r-cran-jquerylib. 122s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 122s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 122s Selecting previously unselected package r-cran-fs. 122s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 122s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 122s Selecting previously unselected package r-cran-rappdirs. 122s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 122s Unpacking r-cran-rappdirs (0.3.3-1) ... 122s Selecting previously unselected package r-cran-sass. 122s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 122s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 122s Selecting previously unselected package r-cran-bslib. 122s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 122s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 122s Selecting previously unselected package r-cran-fontawesome. 122s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 122s Unpacking r-cran-fontawesome (0.5.2-1) ... 122s Selecting previously unselected package r-cran-tinytex. 122s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 122s Unpacking r-cran-tinytex (0.49-1) ... 122s Selecting previously unselected package libjs-modernizr. 123s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 123s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 123s Selecting previously unselected package r-cran-pkgkitten. 123s Preparing to unpack .../232-r-cran-pkgkitten_0.2.3-1_all.deb ... 123s Unpacking r-cran-pkgkitten (0.2.3-1) ... 123s Selecting previously unselected package r-cran-rcpp. 123s Preparing to unpack .../233-r-cran-rcpp_1.0.12-1_arm64.deb ... 123s Unpacking r-cran-rcpp (1.0.12-1) ... 123s Selecting previously unselected package r-cran-later. 123s Preparing to unpack .../234-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 123s Unpacking r-cran-later (1.3.2+dfsg-1) ... 123s Selecting previously unselected package r-cran-promises. 123s Preparing to unpack .../235-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 123s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 123s Selecting previously unselected package r-cran-httpuv. 123s Preparing to unpack .../236-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 123s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 123s Selecting previously unselected package r-cran-xtable. 123s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2_all.deb ... 123s Unpacking r-cran-xtable (1:1.8-4-2) ... 123s Selecting previously unselected package r-cran-sourcetools. 123s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 123s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 123s Selecting previously unselected package r-cran-commonmark. 123s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 123s Unpacking r-cran-commonmark (1.9.1-1) ... 123s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 123s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 123s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 123s Selecting previously unselected package r-cran-shiny. 123s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 123s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 123s Selecting previously unselected package r-cran-rmarkdown. 123s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 123s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 123s Selecting previously unselected package r-cran-bookdown. 123s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 123s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 123s Selecting previously unselected package r-cran-biocmanager. 123s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 123s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 123s Selecting previously unselected package tex-common. 123s Preparing to unpack .../245-tex-common_6.18_all.deb ... 123s Unpacking tex-common (6.18) ... 123s Selecting previously unselected package t1utils. 123s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 123s Unpacking t1utils (1.41-4build2) ... 123s Selecting previously unselected package texlive-binaries. 123s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 123s Unpacking texlive-binaries (2023.20230311.66589-9) ... 124s Selecting previously unselected package texlive-base. 124s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 124s Unpacking texlive-base (2023.20240207-1) ... 125s Selecting previously unselected package texlive-latex-base. 125s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 125s Unpacking texlive-latex-base (2023.20240207-1) ... 125s Selecting previously unselected package texlive-bibtex-extra. 125s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 125s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 127s Selecting previously unselected package r-bioc-biocstyle. 127s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 127s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 127s Selecting previously unselected package r-cran-xml. 128s Preparing to unpack .../252-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 128s Unpacking r-cran-xml (3.99-0.16.1-1) ... 128s Selecting previously unselected package r-cran-hms. 128s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 128s Unpacking r-cran-hms (1.1.3-1) ... 128s Selecting previously unselected package r-cran-prettyunits. 128s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 128s Unpacking r-cran-prettyunits (1.2.0-1) ... 128s Selecting previously unselected package r-cran-progress. 128s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 128s Unpacking r-cran-progress (1.2.3-1) ... 128s Selecting previously unselected package r-cran-xml2. 128s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 128s Unpacking r-cran-xml2 (1.3.6-1) ... 128s Selecting previously unselected package r-bioc-biomart. 128s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 128s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 128s Selecting previously unselected package r-cran-lattice. 128s Preparing to unpack .../258-r-cran-lattice_0.22-5-1_arm64.deb ... 128s Unpacking r-cran-lattice (0.22-5-1) ... 128s Selecting previously unselected package r-cran-matrix. 128s Preparing to unpack .../259-r-cran-matrix_1.6-5-1_arm64.deb ... 128s Unpacking r-cran-matrix (1.6-5-1) ... 128s Selecting previously unselected package r-cran-matrixstats. 128s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 128s Unpacking r-cran-matrixstats (1.2.0-1) ... 128s Selecting previously unselected package r-bioc-matrixgenerics. 128s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 128s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 128s Selecting previously unselected package r-cran-abind. 128s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 128s Unpacking r-cran-abind (1.4-5-2) ... 128s Selecting previously unselected package r-bioc-s4arrays. 128s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-sparsearray. 128s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 128s Selecting previously unselected package r-bioc-delayedarray. 128s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-genomicranges. 128s Preparing to unpack .../266-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 128s Selecting previously unselected package r-bioc-summarizedexperiment. 128s Preparing to unpack .../267-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 128s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-rhtslib. 128s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 128s Selecting previously unselected package r-bioc-rsamtools. 128s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 128s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 129s Selecting previously unselected package r-bioc-genomicalignments. 129s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 129s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 129s Selecting previously unselected package r-cran-rjson. 129s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 129s Unpacking r-cran-rjson (0.2.21-1) ... 129s Selecting previously unselected package r-cran-restfulr. 129s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 129s Unpacking r-cran-restfulr (0.0.15-1) ... 129s Selecting previously unselected package r-bioc-rtracklayer. 129s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 129s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 129s Selecting previously unselected package r-bioc-genomicfeatures. 129s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 129s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 129s Selecting previously unselected package r-cran-hwriter. 129s Preparing to unpack .../275-r-cran-hwriter_1.3.2.1-1_all.deb ... 129s Unpacking r-cran-hwriter (1.3.2.1-1) ... 129s Selecting previously unselected package r-cran-jpeg. 129s Preparing to unpack .../276-r-cran-jpeg_0.1-10-1_arm64.deb ... 129s Unpacking r-cran-jpeg (0.1-10-1) ... 129s Selecting previously unselected package r-cran-rcolorbrewer. 129s Preparing to unpack .../277-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 129s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 129s Selecting previously unselected package r-cran-deldir. 129s Preparing to unpack .../278-r-cran-deldir_2.0-4-1_arm64.deb ... 129s Unpacking r-cran-deldir (2.0-4-1) ... 129s Selecting previously unselected package r-cran-rcppeigen. 129s Preparing to unpack .../279-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 129s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 129s Selecting previously unselected package r-cran-interp. 129s Preparing to unpack .../280-r-cran-interp_1.1-6-1_arm64.deb ... 129s Unpacking r-cran-interp (1.1-6-1) ... 129s Selecting previously unselected package r-cran-mass. 129s Preparing to unpack .../281-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 129s Unpacking r-cran-mass 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... 135s Setting up r-bioc-xvector (0.42.0-1) ... 135s Setting up r-cran-sass (0.4.8+dfsg-1) ... 135s Setting up r-cran-dplyr (1.1.4-1) ... 135s Setting up r-cran-rsqlite (2.3.4-1) ... 135s Setting up r-cran-progress (1.2.3-1) ... 135s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 135s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 135s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 135s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 135s Setting up r-cran-fontawesome (0.5.2-1) ... 135s Setting up r-cran-latticeextra (0.6-30-1) ... 135s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 135s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 135s Setting up r-cran-tidyr (1.3.1-1) ... 135s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 135s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 135s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 135s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 135s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 135s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 135s Setting up r-bioc-annotationdbi (1.64.1-1) ... 135s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 135s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 135s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 135s Setting up r-bioc-genomicalignments (1.38.2-1) ... 135s Setting up r-cran-bookdown (0.37+dfsg-1) ... 135s Setting up r-bioc-rtracklayer (1.62.0-1) ... 135s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 135s Setting up r-bioc-shortread (1.60.0-2) ... 135s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 135s Setting up autopkgtest-satdep (0) ... 135s Processing triggers for man-db (2.12.0-3) ... 136s Processing triggers for install-info (7.1-3) ... 136s Processing triggers for libc-bin (2.39-0ubuntu2) ... 136s Processing triggers for tex-common (6.18) ... 136s Running updmap-sys. This may take some time... done. 136s Running mktexlsr /var/lib/texmf ... done. 137s Building format(s) --all. 172s This may take some time... done. 186s (Reading database ... 124916 files and directories currently installed.) 186s Removing autopkgtest-satdep (0) ... 187s autopkgtest [13:50:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 187s autopkgtest [13:50:37]: test pkg-r-autopkgtest: [----------------------- 187s Test: Try to load the R library Rsamtools 188s 188s R version 4.3.2 (2023-10-31) -- "Eye Holes" 188s Copyright (C) 2023 The R Foundation for Statistical Computing 188s Platform: aarch64-unknown-linux-gnu (64-bit) 188s 188s R is free software and comes with ABSOLUTELY NO WARRANTY. 188s You are welcome to redistribute it under certain conditions. 188s Type 'license()' or 'licence()' for distribution details. 188s 188s R is a collaborative project with many contributors. 188s Type 'contributors()' for more information and 188s 'citation()' on how to cite R or R packages in publications. 188s 188s Type 'demo()' for some demos, 'help()' for on-line help, or 188s 'help.start()' for an HTML browser interface to help. 188s Type 'q()' to quit R. 188s 188s > library('Rsamtools') 188s Loading required package: GenomeInfoDb 188s Loading required package: BiocGenerics 188s 188s Attaching package: ‘BiocGenerics’ 188s 188s The following objects are masked from ‘package:stats’: 188s 188s IQR, mad, sd, var, xtabs 188s 188s The following objects are masked from ‘package:base’: 188s 188s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 188s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 188s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 188s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 188s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 188s table, tapply, union, unique, unsplit, which.max, which.min 188s 188s Loading required package: S4Vectors 188s Loading required package: stats4 189s 189s Attaching package: ‘S4Vectors’ 189s 189s The following object is masked from ‘package:utils’: 189s 189s findMatches 189s 189s The following objects are masked from ‘package:base’: 189s 189s expand.grid, I, unname 189s 189s Loading required package: IRanges 190s Loading required package: GenomicRanges 190s Loading required package: Biostrings 190s Loading required package: XVector 191s 191s Attaching package: ‘Biostrings’ 191s 191s The following object is masked from ‘package:base’: 191s 191s strsplit 191s 191s > 191s > 191s Warning message: 191s package ‘Rsamtools’ was built under R version 4.3.3 191s Other tests are currently unsupported! 191s They will be progressively added. 191s autopkgtest [13:50:41]: test pkg-r-autopkgtest: -----------------------] 192s autopkgtest [13:50:42]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 192s pkg-r-autopkgtest PASS 192s autopkgtest [13:50:42]: @@@@@@@@@@@@@@@@@@@@ summary 192s pkg-r-autopkgtest PASS 203s Creating nova instance adt-noble-arm64-r-bioc-rsamtools-20240316-134729-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...