0s autopkgtest [13:45:34]: starting date and time: 2024-03-16 13:45:34+0000 0s autopkgtest [13:45:34]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:45:34]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._9zinjtx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rhtslib,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rsamtools --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rhtslib/2.4.1+dfsg-3build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-rsamtools-20240316-134534-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 60s autopkgtest [13:46:34]: testbed dpkg architecture: arm64 60s autopkgtest [13:46:34]: testbed apt version: 2.7.12 60s autopkgtest [13:46:34]: @@@@@@@@@@@@@@@@@@@@ test bed setup 61s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 61s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 61s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 61s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 61s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 61s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 61s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 61s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 61s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 61s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 61s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 61s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 61s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 63s Fetched 9092 kB in 2s (5669 kB/s) 63s Reading package lists... 66s Reading package lists... 67s Building dependency tree... 67s Reading state information... 67s Calculating upgrade... 67s The following packages will be REMOVED: 67s libssl3 67s The following NEW packages will be installed: 67s libssl3t64 67s The following packages have been kept back: 67s curl 67s The following packages will be upgraded: 67s openssl ubuntu-minimal ubuntu-standard 68s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 68s Need to get 2775 kB of archives. 68s After this operation, 72.7 kB of additional disk space will be used. 68s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 68s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 68s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 68s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 69s Fetched 2775 kB in 1s (4085 kB/s) 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 69s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 69s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 69s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 69s wget depends on libssl3 (>= 3.0.0). 69s u-boot-tools depends on libssl3 (>= 3.0.0). 69s tnftp depends on libssl3 (>= 3.0.0). 69s tcpdump depends on libssl3 (>= 3.0.0). 69s systemd-resolved depends on libssl3 (>= 3.0.0). 69s systemd depends on libssl3 (>= 3.0.0). 69s sudo depends on libssl3 (>= 3.0.0). 69s sbsigntool depends on libssl3 (>= 3.0.0). 69s rsync depends on libssl3 (>= 3.0.0). 69s python3-cryptography depends on libssl3 (>= 3.0.0). 69s openssh-server depends on libssl3 (>= 3.0.10). 69s openssh-client depends on libssl3 (>= 3.0.10). 69s mtd-utils depends on libssl3 (>= 3.0.0). 69s mokutil depends on libssl3 (>= 3.0.0). 69s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 69s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 69s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 69s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 69s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 69s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 69s libnvme1 depends on libssl3 (>= 3.0.0). 69s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 69s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 69s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 69s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 69s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 69s kmod depends on libssl3 (>= 3.0.0). 69s dhcpcd-base depends on libssl3 (>= 3.0.0). 69s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 69s 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 69s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 69s Selecting previously unselected package libssl3t64:arm64. 69s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 69s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 69s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 69s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 69s Unpacking ubuntu-minimal (1.536) over (1.535) ... 69s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 69s Unpacking ubuntu-standard (1.536) over (1.535) ... 69s Setting up ubuntu-minimal (1.536) ... 69s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 69s Setting up ubuntu-standard (1.536) ... 69s Setting up openssl (3.0.13-0ubuntu1) ... 69s Processing triggers for man-db (2.12.0-3) ... 70s Processing triggers for libc-bin (2.39-0ubuntu2) ... 70s Reading package lists... 70s Building dependency tree... 70s Reading state information... 71s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 72s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 72s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 72s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 72s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 73s Reading package lists... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s Calculating upgrade... 74s The following packages have been kept back: 74s curl 74s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 74s Reading package lists... 74s Building dependency tree... 74s Reading state information... 75s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 78s autopkgtest [13:46:52]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 78s autopkgtest [13:46:52]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rsamtools 80s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (dsc) [2354 B] 80s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (tar) [2463 kB] 80s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rsamtools 2.18.0+dfsg-1 (diff) [6804 B] 80s gpgv: Signature made Thu Nov 30 10:32:59 2023 UTC 80s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 80s gpgv: issuer "tillea@rki.de" 80s gpgv: Can't check signature: No public key 80s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.18.0+dfsg-1.dsc: no acceptable signature found 81s autopkgtest [13:46:55]: testing package r-bioc-rsamtools version 2.18.0+dfsg-1 82s autopkgtest [13:46:56]: build not needed 83s autopkgtest [13:46:57]: test pkg-r-autopkgtest: preparing testbed 84s Reading package lists... 85s Building dependency tree... 85s Reading state information... 85s Starting pkgProblemResolver with broken count: 0 85s Starting 2 pkgProblemResolver with broken count: 0 85s Done 86s The following additional packages will be installed: 86s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 86s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 86s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 86s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 86s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 86s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 86s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 86s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 86s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 86s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 86s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 86s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 86s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 86s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 86s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 86s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 86s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 86s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 86s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 86s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 86s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 86s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 86s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 86s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 86s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 86s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 86s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 86s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 86s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 86s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 86s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 86s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 86s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 86s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 86s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 86s r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 86s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 86s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 86s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 86s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 86s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 86s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 86s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 86s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 86s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 86s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 86s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 86s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 86s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 86s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 86s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 86s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 86s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 86s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 86s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 86s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 86s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 86s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 86s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 86s Suggested packages: 86s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 86s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 86s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 86s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 86s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 86s libboost-context1.83-dev libboost-contract1.83-dev 86s libboost-coroutine1.83-dev libboost-date-time1.83-dev 86s libboost-exception1.83-dev libboost-fiber1.83-dev 86s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 86s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 86s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 86s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 86s libboost-numpy1.83-dev libboost-program-options1.83-dev 86s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 86s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 86s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 86s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 86s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 86s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 86s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 86s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 86s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 86s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 86s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 86s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 86s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 86s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 86s r-cran-doparallel r-bioc-variantannotation r-cran-batchtools 86s r-cran-data.table r-cran-mockery r-cran-webmockr r-bioc-bsgenome 86s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 86s r-cran-r.utils r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter 86s r-cran-markdown r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 86s r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff 86s r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-polyclip r-cran-lubridate 86s r-cran-sp r-cran-ggplot2 r-cran-gridextra r-cran-scatterplot3d r-cran-getopt 86s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales 86s r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 86s r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio r-cran-callr 86s r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper 86s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 86s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 86s Recommended packages: 86s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 86s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 86s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 86s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 86s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 86s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 86s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 86s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 86s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 86s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-readr r-cran-r.rsp r-cran-sf 86s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 86s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 86s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-future r-cran-usethis 86s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 86s r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown 86s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 86s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 86s The following packages will be REMOVED: 86s libcurl4 libpsl5 86s The following NEW packages will be installed: 86s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 86s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 86s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 86s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 86s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 86s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 86s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 86s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 86s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 86s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 86s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 86s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 86s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 86s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 86s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 86s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 86s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 86s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 86s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 86s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 86s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 86s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 86s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 86s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 86s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 86s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 86s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 86s linux-libc-dev littler node-bootstrap-sass node-html5shiv node-normalize.css 86s pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 86s r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 86s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 86s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 86s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 86s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 86s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 86s r-bioc-s4arrays r-bioc-s4vectors r-bioc-shortread r-bioc-sparsearray 86s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 86s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 86s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 86s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 86s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-deldir 86s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 86s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 86s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 86s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 86s r-cran-hwriter r-cran-interp r-cran-jpeg r-cran-jquerylib r-cran-jsonlite 86s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-latticeextra 86s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix 86s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 86s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 86s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 86s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl 86s r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite 86s r-cran-runit r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 86s r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr 86s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 86s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 86s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 86s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 86s The following packages will be upgraded: 86s curl 86s 1 upgraded, 287 newly installed, 2 to remove and 0 not upgraded. 86s Need to get 427 MB/427 MB of archives. 86s After this operation, 1353 MB of additional disk space will be used. 86s Get:1 /tmp/autopkgtest.gOyiBU/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [788 B] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 87s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 87s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 87s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 87s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 87s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 87s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 87s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 88s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 88s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 88s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 89s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 89s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 89s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 89s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 89s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 89s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 89s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 89s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 89s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 89s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 89s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 89s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 89s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 89s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 90s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 90s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 90s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 90s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 90s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 91s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 91s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 91s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 91s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 91s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 91s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 91s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 91s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 91s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 91s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 91s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 91s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 91s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 91s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 91s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 91s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 91s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 91s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 91s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 91s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 91s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 91s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 91s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 91s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 91s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 91s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 91s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 91s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 92s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 92s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 92s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 92s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 92s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 92s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 92s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 92s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 92s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 92s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 92s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 92s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 92s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 92s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 92s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 92s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 92s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 92s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 92s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 92s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 92s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 92s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 92s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 92s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 92s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 92s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 92s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 92s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 92s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 92s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 92s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 92s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 92s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 92s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 92s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 92s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 92s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 92s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 92s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 92s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 92s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 92s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 93s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 93s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 93s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 93s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 93s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 93s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 93s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 93s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 93s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 93s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 93s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 93s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 93s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 93s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 93s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 93s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 93s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 93s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 93s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 93s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 93s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 93s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 93s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 93s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 93s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 93s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 93s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 93s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 93s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 93s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 94s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 94s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 94s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 94s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 94s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 94s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 94s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 94s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 94s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 94s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 94s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 94s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 94s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 94s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 95s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 95s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 95s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 95s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 95s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 95s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 95s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 95s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 95s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 95s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 95s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 95s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 95s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 95s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 95s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 95s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 95s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 95s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 95s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 95s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 95s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 95s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 95s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 95s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 96s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 96s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 96s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 96s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 96s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 96s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 96s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 96s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 96s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 96s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 96s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 96s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 96s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 96s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 96s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 96s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 96s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 97s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 97s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 97s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 97s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 97s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 97s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 97s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 97s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 97s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 97s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 97s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 97s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 97s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 97s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 97s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 97s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 98s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 98s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 98s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 98s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 98s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 98s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 98s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 98s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 98s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 98s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 98s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 98s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 98s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 98s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 98s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 98s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 98s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 98s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 98s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 98s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 98s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 98s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 99s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 99s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 99s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 99s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 99s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 99s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 99s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 99s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 99s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 99s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 99s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 99s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 99s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 99s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 99s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 99s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 99s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 99s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 99s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 99s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 99s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 99s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 99s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 99s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 99s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 99s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 99s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 99s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 101s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 101s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 101s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 101s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 101s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 101s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 101s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 101s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 101s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 101s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 101s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 101s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 101s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 101s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 101s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 101s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 101s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 101s Get:272 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3build1 [1358 kB] 101s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 102s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 102s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 102s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 102s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 102s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 102s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 102s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 102s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 102s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 102s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 102s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 102s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 102s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 102s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-shortread arm64 1.60.0-2 [5200 kB] 102s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 104s Preconfiguring packages ... 104s Fetched 427 MB in 16s (26.6 MB/s) 104s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 104s wget depends on libpsl5 (>= 0.16.0). 104s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 104s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 104s 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 104s Removing libpsl5:arm64 (0.21.2-1build1) ... 104s Selecting previously unselected package libpsl5t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 104s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 104s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 104s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 104s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 104s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 104s Selecting previously unselected package libcurl4t64:arm64. 104s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 104s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 104s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 104s Selecting previously unselected package libc-dev-bin. 104s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 104s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 104s Selecting previously unselected package linux-libc-dev:arm64. 104s Preparing to unpack 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libc6-dev:arm64 (2.39-0ubuntu2) ... 105s Selecting previously unselected package libisl23:arm64. 105s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 105s Unpacking libisl23:arm64 (0.26-3) ... 105s Selecting previously unselected package libmpc3:arm64. 105s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 105s Unpacking libmpc3:arm64 (1.3.1-1) ... 105s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 105s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 105s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 105s Selecting previously unselected package cpp-13. 105s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 105s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 105s Selecting previously unselected package cpp-aarch64-linux-gnu. 105s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 105s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 105s Selecting previously unselected package cpp. 105s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 105s Unpacking cpp (4:13.2.0-7ubuntu1) ... 105s Selecting previously unselected package libcc1-0:arm64. 105s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 105s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 105s Selecting previously unselected package libgomp1:arm64. 105s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 105s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 105s Selecting previously unselected package libitm1:arm64. 105s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 105s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 105s Selecting previously unselected package libatomic1:arm64. 105s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 105s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 105s Selecting previously unselected package libasan8:arm64. 105s 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.../033-build-essential_12.10ubuntu1_arm64.deb ... 107s Unpacking build-essential (12.10ubuntu1) ... 107s Selecting previously unselected package dctrl-tools. 107s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 107s Unpacking dctrl-tools (2.24-3build2) ... 107s Selecting previously unselected package fonts-dejavu-mono. 107s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 107s Unpacking fonts-dejavu-mono (2.37-8) ... 107s Selecting previously unselected package fonts-dejavu-core. 107s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 107s Unpacking fonts-dejavu-core (2.37-8) ... 107s Selecting previously unselected package fontconfig-config. 107s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 107s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 107s Selecting previously unselected package libfontconfig1:arm64. 107s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 107s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 107s Selecting previously unselected package fontconfig. 107s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 107s Unpacking fontconfig (2.15.0-1ubuntu1) ... 107s Selecting previously unselected package fonts-font-awesome. 107s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 107s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 107s Selecting previously unselected package fonts-glyphicons-halflings. 107s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 107s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 107s Selecting previously unselected package fonts-lmodern. 107s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 107s Unpacking fonts-lmodern (2.005-1) ... 107s Selecting previously unselected package fonts-mathjax. 107s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 107s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 108s Selecting previously unselected package libgfortran5:arm64. 108s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 108s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 108s Selecting previously unselected package libgfortran-13-dev:arm64. 108s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 108s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 108s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 108s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 108s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 108s Selecting previously unselected package gfortran-13. 108s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 108s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 108s Selecting previously unselected package gfortran-aarch64-linux-gnu. 108s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 108s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 108s Selecting previously unselected package gfortran. 108s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 108s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 108s Selecting previously unselected package icu-devtools. 108s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 108s Unpacking icu-devtools (74.2-1ubuntu1) ... 108s Selecting previously unselected package javascript-common. 108s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 108s Unpacking javascript-common (11+nmu1) ... 108s Selecting previously unselected package libio-string-perl. 108s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 108s Unpacking libio-string-perl (1.08-4) ... 108s Selecting previously unselected package liblatex-tounicode-perl. 108s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb 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(1.83.0.1ubuntu2) ... 110s Selecting previously unselected package libbz2-dev:arm64. 110s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 110s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 110s Selecting previously unselected package libpixman-1-0:arm64. 110s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 110s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 110s Selecting previously unselected package libxcb-render0:arm64. 110s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 110s Unpacking libxcb-render0:arm64 (1.15-1) ... 110s Selecting previously unselected package libxcb-shm0:arm64. 110s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 110s Unpacking libxcb-shm0:arm64 (1.15-1) ... 110s Selecting previously unselected package libxrender1:arm64. 110s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 110s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 110s Selecting previously unselected package libcairo2:arm64. 110s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 110s Unpacking libcairo2:arm64 (1.18.0-1) ... 110s Selecting previously unselected package libdatrie1:arm64. 110s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 110s Unpacking libdatrie1:arm64 (0.2.13-3) ... 110s Selecting previously unselected package libdeflate0:arm64. 110s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 110s Unpacking libdeflate0:arm64 (1.19-1) ... 110s Selecting previously unselected package libgraphite2-3:arm64. 110s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 110s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 110s Selecting previously unselected package libharfbuzz0b:arm64. 110s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 110s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 110s Selecting previously unselected package x11-common. 110s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 110s Unpacking x11-common (1:7.7+23ubuntu2) ... 111s Selecting previously unselected package libice6:arm64. 111s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 111s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 111s Selecting previously unselected package libicu-dev:arm64. 111s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 111s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 111s Selecting previously unselected package libjpeg-turbo8:arm64. 111s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 111s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 111s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 111s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 111s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 111s Selecting previously unselected package libjpeg8:arm64. 111s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 111s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjpeg8-dev:arm64. 111s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 111s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjpeg-dev:arm64. 111s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 111s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 111s Selecting previously unselected package libjs-bootstrap. 111s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 111s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 111s Selecting previously unselected package libjs-popper.js. 111s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 111s Unpacking libjs-popper.js (1.16.1+ds-6) ... 111s Selecting previously unselected package libjs-bootstrap4. 111s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 111s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 111s Selecting previously unselected package libjs-d3. 111s 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.../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 112s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 112s Selecting previously unselected package libjs-prettify. 112s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 112s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 112s Selecting previously unselected package libkpathsea6:arm64. 112s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 112s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 112s Selecting previously unselected package liblapack3:arm64. 112s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 112s Unpacking liblapack3:arm64 (3.12.0-3) ... 112s Selecting previously unselected package liblapack-dev:arm64. 112s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 112s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 112s Selecting previously unselected package liblerc4:arm64. 112s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 112s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 112s Selecting previously unselected package liblua5.4-0:arm64. 112s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 112s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 112s Selecting previously unselected package libncurses-dev:arm64. 112s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 112s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 112s Selecting previously unselected package libthai-data. 112s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 112s Unpacking libthai-data (0.1.29-2) ... 112s Selecting previously unselected package libthai0:arm64. 112s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 112s Unpacking libthai0:arm64 (0.1.29-2) ... 112s Selecting previously unselected package libpango-1.0-0:arm64. 112s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 112s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 113s Selecting previously unselected package libpangoft2-1.0-0:arm64. 113s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 113s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 113s Selecting previously unselected package libpangocairo-1.0-0:arm64. 113s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 113s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 113s Selecting previously unselected package libpaper1:arm64. 113s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 113s Unpacking libpaper1:arm64 (1.1.29) ... 113s Selecting previously unselected package libpaper-utils. 113s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 113s Unpacking libpaper-utils (1.1.29) ... 113s Selecting previously unselected package libpcre2-16-0:arm64. 113s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 113s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 113s Selecting previously unselected package libpcre2-32-0:arm64. 113s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 113s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 113s Selecting previously unselected package libpcre2-posix3:arm64. 113s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 113s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 113s Selecting previously unselected package libpcre2-dev:arm64. 113s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 113s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 113s Selecting previously unselected package libpkgconf3:arm64. 113s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 113s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 113s Selecting previously unselected package zlib1g-dev:arm64. 113s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 113s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 113s Selecting previously unselected package libpng-dev:arm64. 113s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 113s Unpacking libpng-dev:arm64 (1.6.43-1) ... 113s Selecting previously unselected package libpotrace0:arm64. 113s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 113s Unpacking libpotrace0:arm64 (1.16-2) ... 113s Selecting previously unselected package libptexenc1:arm64. 113s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 113s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 113s Selecting previously unselected package libreadline-dev:arm64. 113s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 113s Unpacking libreadline-dev:arm64 (8.2-3) ... 113s Selecting previously unselected package libsharpyuv0:arm64. 113s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 113s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 113s Selecting previously unselected package libsm6:arm64. 113s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 113s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 113s Selecting previously unselected package libsynctex2:arm64. 113s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 113s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 113s Selecting previously unselected package libtcl8.6:arm64. 113s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 113s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 113s Selecting previously unselected package libteckit0:arm64. 113s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 113s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 113s Selecting previously unselected package libtexlua53-5:arm64. 113s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 113s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 113s Selecting previously unselected package libjbig0:arm64. 113s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 113s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 113s Selecting previously unselected package libwebp7:arm64. 113s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 113s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 114s Selecting previously unselected package libtiff6:arm64. 114s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 114s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 114s Selecting previously unselected package libxft2:arm64. 114s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 114s Unpacking libxft2:arm64 (2.3.6-1) ... 114s Selecting previously unselected package libxss1:arm64. 114s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 114s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 114s Selecting previously unselected package libtk8.6:arm64. 114s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 114s Unpacking libtk8.6:arm64 (8.6.13-2) ... 114s Selecting previously unselected package libxt6:arm64. 114s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 114s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 114s Selecting previously unselected package libxmu6:arm64. 114s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 114s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 114s Selecting previously unselected package libxpm4:arm64. 114s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 114s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 114s Selecting previously unselected package libxaw7:arm64. 114s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 114s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 114s Selecting previously unselected package libxi6:arm64. 114s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 114s Unpacking libxi6:arm64 (2:1.8.1-1) ... 114s Selecting previously unselected package libzzip-0-13:arm64. 114s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 114s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 114s Selecting previously unselected package zip. 114s Preparing to unpack .../133-zip_3.0-13_arm64.deb ... 114s Unpacking zip (3.0-13) ... 114s Selecting previously unselected package unzip. 114s Preparing to unpack .../134-unzip_6.0-28ubuntu3_arm64.deb ... 114s Unpacking unzip (6.0-28ubuntu3) ... 114s Selecting previously unselected package xdg-utils. 114s Preparing to unpack .../135-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 114s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 114s Selecting previously unselected package r-base-core. 114s Preparing to unpack .../136-r-base-core_4.3.2-1build1_arm64.deb ... 114s Unpacking r-base-core (4.3.2-1build1) ... 114s Selecting previously unselected package r-cran-littler. 114s Preparing to unpack .../137-r-cran-littler_0.3.19-1_arm64.deb ... 114s Unpacking r-cran-littler (0.3.19-1) ... 114s Selecting previously unselected package littler. 114s Preparing to unpack .../138-littler_0.3.19-1_all.deb ... 114s Unpacking littler (0.3.19-1) ... 114s Selecting previously unselected package node-bootstrap-sass. 115s Preparing to unpack .../139-node-bootstrap-sass_3.4.3-2_all.deb ... 115s Unpacking node-bootstrap-sass (3.4.3-2) ... 115s Selecting previously unselected package node-html5shiv. 115s Preparing to unpack .../140-node-html5shiv_3.7.3+dfsg-5_all.deb ... 115s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 115s Selecting previously unselected package node-normalize.css. 115s Preparing to unpack .../141-node-normalize.css_8.0.1-5_all.deb ... 115s Unpacking node-normalize.css (8.0.1-5) ... 115s Selecting previously unselected package pandoc-data. 115s Preparing to unpack .../142-pandoc-data_3.1.3-1_all.deb ... 115s Unpacking pandoc-data (3.1.3-1) ... 115s Selecting previously unselected package pandoc. 115s Preparing to unpack .../143-pandoc_3.1.3+ds-2_arm64.deb ... 115s Unpacking pandoc (3.1.3+ds-2) ... 116s Selecting previously unselected package pkgconf-bin. 116s Preparing to unpack .../144-pkgconf-bin_1.8.1-2_arm64.deb ... 116s Unpacking pkgconf-bin (1.8.1-2) ... 116s Selecting previously unselected package pkgconf:arm64. 116s Preparing to unpack .../145-pkgconf_1.8.1-2_arm64.deb ... 116s Unpacking pkgconf:arm64 (1.8.1-2) ... 116s Selecting previously unselected package pkg-config:arm64. 116s Preparing to unpack .../146-pkg-config_1.8.1-2_arm64.deb ... 116s Unpacking pkg-config:arm64 (1.8.1-2) ... 116s Selecting previously unselected package liblzma-dev:arm64. 116s Preparing to unpack .../147-liblzma-dev_5.4.5-0.3_arm64.deb ... 116s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 116s Selecting previously unselected package r-base-dev. 116s Preparing to unpack .../148-r-base-dev_4.3.2-1build1_all.deb ... 116s Unpacking r-base-dev (4.3.2-1build1) ... 116s Selecting previously unselected package pkg-r-autopkgtest. 116s Preparing to unpack .../149-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 116s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 116s Selecting previously unselected package r-bioc-biocgenerics. 116s Preparing to unpack .../150-r-bioc-biocgenerics_0.48.1-2_all.deb ... 116s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 116s Selecting previously unselected package r-bioc-biobase. 116s Preparing to unpack .../151-r-bioc-biobase_2.62.0-1_arm64.deb ... 116s Unpacking r-bioc-biobase (2.62.0-1) ... 116s Selecting previously unselected package r-bioc-s4vectors. 116s Preparing to unpack .../152-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 116s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 116s Selecting previously unselected package r-bioc-iranges. 116s Preparing to unpack .../153-r-bioc-iranges_2.36.0-1_arm64.deb ... 116s Unpacking r-bioc-iranges (2.36.0-1) ... 116s Selecting previously unselected package r-cran-dbi. 116s Preparing to unpack .../154-r-cran-dbi_1.2.2-1_all.deb ... 116s Unpacking r-cran-dbi (1.2.2-1) ... 116s Selecting previously unselected package r-cran-bit. 116s Preparing to unpack .../155-r-cran-bit_4.0.5-1_arm64.deb ... 116s Unpacking r-cran-bit (4.0.5-1) ... 116s Selecting previously unselected package r-cran-bit64. 116s Preparing to unpack .../156-r-cran-bit64_4.0.5-1_arm64.deb ... 116s Unpacking r-cran-bit64 (4.0.5-1) ... 116s Selecting previously unselected package r-cran-rlang. 116s Preparing to unpack .../157-r-cran-rlang_1.1.3-1_arm64.deb ... 116s Unpacking r-cran-rlang (1.1.3-1) ... 116s Selecting previously unselected package r-cran-cli. 116s Preparing to unpack .../158-r-cran-cli_3.6.2-1_arm64.deb ... 116s Unpacking r-cran-cli (3.6.2-1) ... 116s Selecting previously unselected package r-cran-glue. 116s Preparing to unpack .../159-r-cran-glue_1.7.0-1_arm64.deb ... 116s Unpacking r-cran-glue (1.7.0-1) ... 116s Selecting previously unselected package r-cran-lifecycle. 116s Preparing to unpack .../160-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 116s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 116s Selecting previously unselected package r-cran-vctrs. 116s Preparing to unpack .../161-r-cran-vctrs_0.6.5-1_arm64.deb ... 116s Unpacking r-cran-vctrs (0.6.5-1) ... 117s Selecting previously unselected package r-cran-blob. 117s Preparing to unpack .../162-r-cran-blob_1.2.4-1_all.deb ... 117s Unpacking r-cran-blob (1.2.4-1) ... 117s Selecting previously unselected package r-cran-fastmap. 117s Preparing to unpack .../163-r-cran-fastmap_1.1.1-1_arm64.deb ... 117s Unpacking r-cran-fastmap (1.1.1-1) ... 117s Selecting previously unselected package r-cran-cachem. 117s Preparing to unpack .../164-r-cran-cachem_1.0.8-1_arm64.deb ... 117s Unpacking r-cran-cachem (1.0.8-1) ... 117s Selecting previously unselected package r-cran-memoise. 117s Preparing to unpack .../165-r-cran-memoise_2.0.1-1_all.deb ... 117s Unpacking r-cran-memoise (2.0.1-1) ... 117s Selecting previously unselected package r-cran-pkgconfig. 117s Preparing to unpack .../166-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 117s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 117s Selecting previously unselected package r-cran-plogr. 117s Preparing to unpack .../167-r-cran-plogr_0.2.0-3build1_all.deb ... 117s Unpacking r-cran-plogr (0.2.0-3build1) ... 117s Selecting previously unselected package r-cran-cpp11. 117s Preparing to unpack .../168-r-cran-cpp11_0.4.7-1_all.deb ... 117s Unpacking r-cran-cpp11 (0.4.7-1) ... 117s Selecting previously unselected package r-cran-rsqlite. 117s Preparing to unpack .../169-r-cran-rsqlite_2.3.4-1_arm64.deb ... 117s Unpacking r-cran-rsqlite (2.3.4-1) ... 117s Selecting previously unselected package r-cran-curl. 117s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 117s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 117s Selecting previously unselected package r-cran-jsonlite. 117s Preparing to unpack .../171-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 117s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 117s Selecting previously unselected package r-cran-mime. 117s Preparing to unpack .../172-r-cran-mime_0.12-1_arm64.deb ... 117s Unpacking r-cran-mime (0.12-1) ... 117s Selecting previously unselected package r-cran-sys. 117s Preparing to unpack .../173-r-cran-sys_3.4.2-1_arm64.deb ... 117s Unpacking r-cran-sys (3.4.2-1) ... 117s Selecting previously unselected package r-cran-askpass. 117s Preparing to unpack .../174-r-cran-askpass_1.2.0-1_arm64.deb ... 117s Unpacking r-cran-askpass (1.2.0-1) ... 117s Selecting previously unselected package r-cran-openssl. 117s Preparing to unpack .../175-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 117s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 117s Selecting previously unselected package r-cran-r6. 117s Preparing to unpack .../176-r-cran-r6_2.5.1-1_all.deb ... 117s Unpacking r-cran-r6 (2.5.1-1) ... 117s Selecting previously unselected package r-cran-httr. 117s Preparing to unpack .../177-r-cran-httr_1.4.7+dfsg-1_all.deb ... 117s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 117s Selecting previously unselected package r-cran-png. 117s Preparing to unpack .../178-r-cran-png_0.1-8-1_arm64.deb ... 117s Unpacking r-cran-png (0.1-8-1) ... 117s Selecting previously unselected package r-bioc-zlibbioc. 117s Preparing to unpack .../179-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 117s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 117s Selecting previously unselected package r-bioc-xvector. 117s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 117s Unpacking r-bioc-xvector (0.42.0-1) ... 117s Selecting previously unselected package r-cran-bitops. 117s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 117s Unpacking r-cran-bitops (1.0-7-1) ... 117s Selecting previously unselected package r-cran-rcurl. 117s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 117s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 117s Selecting previously unselected package r-bioc-genomeinfodbdata. 117s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 117s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 118s Selecting previously unselected package r-bioc-genomeinfodb. 118s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 118s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 118s Selecting previously unselected package r-cran-crayon. 118s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 118s Unpacking r-cran-crayon (1.5.2-1) ... 118s Selecting previously unselected package r-bioc-biostrings. 118s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 118s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 118s Selecting previously unselected package r-bioc-keggrest. 118s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 118s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 118s Selecting previously unselected package r-bioc-annotationdbi. 118s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 118s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 118s Selecting previously unselected package r-cran-generics. 118s Preparing to unpack .../189-r-cran-generics_0.1.3-1_all.deb ... 118s Unpacking r-cran-generics (0.1.3-1) ... 118s Selecting previously unselected package r-cran-magrittr. 118s Preparing to unpack .../190-r-cran-magrittr_2.0.3-1_arm64.deb ... 118s Unpacking r-cran-magrittr (2.0.3-1) ... 118s Selecting previously unselected package r-cran-fansi. 118s Preparing to unpack .../191-r-cran-fansi_1.0.5-1_arm64.deb ... 118s Unpacking r-cran-fansi (1.0.5-1) ... 118s Selecting previously unselected package r-cran-utf8. 118s Preparing to unpack .../192-r-cran-utf8_1.2.4-1_arm64.deb ... 118s Unpacking r-cran-utf8 (1.2.4-1) ... 118s Selecting previously unselected package r-cran-pillar. 118s Preparing to unpack .../193-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 118s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 118s Selecting previously unselected package r-cran-tibble. 118s Preparing to unpack .../194-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 118s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 118s Selecting previously unselected package r-cran-withr. 118s Preparing to unpack .../195-r-cran-withr_2.5.0-1_all.deb ... 118s Unpacking r-cran-withr (2.5.0-1) ... 118s Selecting previously unselected package r-cran-tidyselect. 118s Preparing to unpack .../196-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 118s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 118s Selecting previously unselected package r-cran-dplyr. 118s Preparing to unpack .../197-r-cran-dplyr_1.1.4-1_arm64.deb ... 118s Unpacking r-cran-dplyr (1.1.4-1) ... 118s Selecting previously unselected package r-cran-purrr. 118s Preparing to unpack .../198-r-cran-purrr_1.0.2-1_arm64.deb ... 118s Unpacking r-cran-purrr (1.0.2-1) ... 118s Selecting previously unselected package r-cran-stringi. 118s Preparing to unpack .../199-r-cran-stringi_1.8.3-1_arm64.deb ... 118s Unpacking r-cran-stringi (1.8.3-1) ... 118s Selecting previously unselected package r-cran-stringr. 118s Preparing to unpack .../200-r-cran-stringr_1.5.1-1_all.deb ... 118s Unpacking r-cran-stringr (1.5.1-1) ... 119s Selecting previously unselected package r-cran-tidyr. 119s Preparing to unpack .../201-r-cran-tidyr_1.3.1-1_arm64.deb ... 119s Unpacking r-cran-tidyr (1.3.1-1) ... 119s Selecting previously unselected package r-cran-dbplyr. 119s Preparing to unpack .../202-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 119s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 119s Selecting previously unselected package r-cran-filelock. 119s Preparing to unpack .../203-r-cran-filelock_1.0.3-1_arm64.deb ... 119s Unpacking r-cran-filelock (1.0.3-1) ... 119s Selecting previously unselected package r-bioc-biocfilecache. 119s Preparing to unpack .../204-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 119s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 119s Selecting previously unselected package r-bioc-biocio. 119s Preparing to unpack .../205-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 119s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 119s Selecting previously unselected package r-cran-formatr. 119s Preparing to unpack .../206-r-cran-formatr_1.14-1_all.deb ... 119s Unpacking r-cran-formatr (1.14-1) ... 119s Selecting previously unselected package r-cran-lambda.r. 119s Preparing to unpack .../207-r-cran-lambda.r_1.2.4-2build1_all.deb ... 119s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 119s Selecting previously unselected package r-cran-futile.options. 119s Preparing to unpack .../208-r-cran-futile.options_1.0.1-3build1_all.deb ... 119s Unpacking r-cran-futile.options (1.0.1-3build1) ... 119s Selecting previously unselected package r-cran-futile.logger. 119s Preparing to unpack .../209-r-cran-futile.logger_1.4.3-4build1_all.deb ... 119s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 119s Selecting previously unselected package r-cran-snow. 119s Preparing to unpack .../210-r-cran-snow_1%3a0.4.4-2_all.deb ... 119s Unpacking r-cran-snow (1:0.4.4-2) ... 119s Selecting previously unselected package r-cran-codetools. 119s Preparing to unpack .../211-r-cran-codetools_0.2-19-1_all.deb ... 119s Unpacking r-cran-codetools (0.2-19-1) ... 119s Selecting previously unselected package r-cran-bh. 119s Preparing to unpack .../212-r-cran-bh_1.84.0-1_all.deb ... 119s Unpacking r-cran-bh (1.84.0-1) ... 119s Selecting previously unselected package r-bioc-biocparallel. 119s Preparing to unpack .../213-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 119s Unpacking r-bioc-biocparallel (1.36.0-1) ... 119s Selecting previously unselected package r-cran-base64enc. 119s Preparing to unpack .../214-r-cran-base64enc_0.1-3-3_arm64.deb ... 119s Unpacking r-cran-base64enc (0.1-3-3) ... 119s Selecting previously unselected package r-cran-digest. 119s Preparing to unpack .../215-r-cran-digest_0.6.34-1_arm64.deb ... 119s Unpacking r-cran-digest (0.6.34-1) ... 119s Selecting previously unselected package r-cran-ellipsis. 119s Preparing to unpack .../216-r-cran-ellipsis_0.3.2-2_arm64.deb ... 119s Unpacking r-cran-ellipsis (0.3.2-2) ... 119s Selecting previously unselected package r-cran-htmltools. 119s Preparing to unpack .../217-r-cran-htmltools_0.5.7-1_arm64.deb ... 119s Unpacking r-cran-htmltools (0.5.7-1) ... 119s Selecting previously unselected package r-cran-evaluate. 119s Preparing to unpack .../218-r-cran-evaluate_0.23-1_all.deb ... 119s Unpacking r-cran-evaluate (0.23-1) ... 119s Selecting previously unselected package r-cran-xfun. 119s Preparing to unpack .../219-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 119s Unpacking r-cran-xfun (0.41+dfsg-1) ... 119s Selecting previously unselected package r-cran-highr. 119s Preparing to unpack .../220-r-cran-highr_0.10+dfsg-1_all.deb ... 119s Unpacking r-cran-highr (0.10+dfsg-1) ... 119s Selecting previously unselected package r-cran-yaml. 119s Preparing to unpack .../221-r-cran-yaml_2.3.8-1_arm64.deb ... 119s Unpacking r-cran-yaml (2.3.8-1) ... 119s Selecting previously unselected package libjs-mathjax. 119s Preparing to unpack .../222-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 119s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 120s Selecting previously unselected package r-cran-knitr. 120s Preparing to unpack .../223-r-cran-knitr_1.45+dfsg-1_all.deb ... 120s Unpacking r-cran-knitr (1.45+dfsg-1) ... 120s Selecting previously unselected package r-cran-jquerylib. 120s Preparing to unpack .../224-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 120s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 120s Selecting previously unselected package r-cran-fs. 120s Preparing to unpack .../225-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 120s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 120s Selecting previously unselected package r-cran-rappdirs. 120s Preparing to unpack .../226-r-cran-rappdirs_0.3.3-1_arm64.deb ... 120s Unpacking r-cran-rappdirs (0.3.3-1) ... 120s Selecting previously unselected package r-cran-sass. 120s Preparing to unpack .../227-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 120s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 120s Selecting previously unselected package r-cran-bslib. 120s Preparing to unpack .../228-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 120s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 121s Selecting previously unselected package r-cran-fontawesome. 121s Preparing to unpack .../229-r-cran-fontawesome_0.5.2-1_all.deb ... 121s Unpacking r-cran-fontawesome (0.5.2-1) ... 121s Selecting previously unselected package r-cran-tinytex. 121s Preparing to unpack .../230-r-cran-tinytex_0.49-1_all.deb ... 121s Unpacking r-cran-tinytex (0.49-1) ... 121s Selecting previously unselected package libjs-modernizr. 121s Preparing to unpack .../231-libjs-modernizr_2.6.2+ds1-5_all.deb ... 121s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 121s Selecting previously unselected package r-cran-pkgkitten. 121s Preparing to unpack .../232-r-cran-pkgkitten_0.2.3-1_all.deb ... 121s Unpacking r-cran-pkgkitten (0.2.3-1) ... 121s Selecting previously unselected package r-cran-rcpp. 121s Preparing to unpack .../233-r-cran-rcpp_1.0.12-1_arm64.deb ... 121s Unpacking r-cran-rcpp (1.0.12-1) ... 121s Selecting previously unselected package r-cran-later. 121s Preparing to unpack .../234-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 121s Unpacking r-cran-later (1.3.2+dfsg-1) ... 121s Selecting previously unselected package r-cran-promises. 121s Preparing to unpack .../235-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 121s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 121s Selecting previously unselected package r-cran-httpuv. 121s Preparing to unpack .../236-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 121s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 121s Selecting previously unselected package r-cran-xtable. 121s Preparing to unpack .../237-r-cran-xtable_1%3a1.8-4-2_all.deb ... 121s Unpacking r-cran-xtable (1:1.8-4-2) ... 121s Selecting previously unselected package r-cran-sourcetools. 121s Preparing to unpack .../238-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 121s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 121s Selecting previously unselected package r-cran-commonmark. 121s Preparing to unpack .../239-r-cran-commonmark_1.9.1-1_arm64.deb ... 121s Unpacking r-cran-commonmark (1.9.1-1) ... 121s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 121s Preparing to unpack .../240-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 121s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 122s Selecting previously unselected package r-cran-shiny. 122s Preparing to unpack .../241-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 122s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 122s Selecting previously unselected package r-cran-rmarkdown. 122s Preparing to unpack .../242-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 122s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 122s Selecting previously unselected package r-cran-bookdown. 122s Preparing to unpack .../243-r-cran-bookdown_0.37+dfsg-1_all.deb ... 122s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 122s Selecting previously unselected package r-cran-biocmanager. 122s Preparing to unpack .../244-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 122s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 122s Selecting previously unselected package tex-common. 122s Preparing to unpack .../245-tex-common_6.18_all.deb ... 122s Unpacking tex-common (6.18) ... 122s Selecting previously unselected package t1utils. 122s Preparing to unpack .../246-t1utils_1.41-4build2_arm64.deb ... 122s Unpacking t1utils (1.41-4build2) ... 122s Selecting previously unselected package texlive-binaries. 122s Preparing to unpack .../247-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 122s Unpacking texlive-binaries (2023.20230311.66589-9) ... 122s Selecting previously unselected package texlive-base. 123s Preparing to unpack .../248-texlive-base_2023.20240207-1_all.deb ... 123s Unpacking texlive-base (2023.20240207-1) ... 124s Selecting previously unselected package texlive-latex-base. 124s Preparing to unpack .../249-texlive-latex-base_2023.20240207-1_all.deb ... 124s Unpacking texlive-latex-base (2023.20240207-1) ... 124s Selecting previously unselected package texlive-bibtex-extra. 124s Preparing to unpack .../250-texlive-bibtex-extra_2023.20240207-1_all.deb ... 124s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 127s Selecting previously unselected package r-bioc-biocstyle. 127s Preparing to unpack .../251-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 127s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 127s Selecting previously unselected package r-cran-xml. 127s Preparing to unpack .../252-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 127s Unpacking r-cran-xml (3.99-0.16.1-1) ... 127s Selecting previously unselected package r-cran-hms. 127s Preparing to unpack .../253-r-cran-hms_1.1.3-1_all.deb ... 127s Unpacking r-cran-hms (1.1.3-1) ... 127s Selecting previously unselected package r-cran-prettyunits. 127s Preparing to unpack .../254-r-cran-prettyunits_1.2.0-1_all.deb ... 127s Unpacking r-cran-prettyunits (1.2.0-1) ... 127s Selecting previously unselected package r-cran-progress. 127s Preparing to unpack .../255-r-cran-progress_1.2.3-1_all.deb ... 127s Unpacking r-cran-progress (1.2.3-1) ... 127s Selecting previously unselected package r-cran-xml2. 127s Preparing to unpack .../256-r-cran-xml2_1.3.6-1_arm64.deb ... 127s Unpacking r-cran-xml2 (1.3.6-1) ... 127s Selecting previously unselected package r-bioc-biomart. 127s Preparing to unpack .../257-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 127s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 127s Selecting previously unselected package r-cran-lattice. 127s Preparing to unpack .../258-r-cran-lattice_0.22-5-1_arm64.deb ... 127s Unpacking r-cran-lattice (0.22-5-1) ... 127s Selecting previously unselected package r-cran-matrix. 127s Preparing to unpack .../259-r-cran-matrix_1.6-5-1_arm64.deb ... 127s Unpacking r-cran-matrix (1.6-5-1) ... 127s Selecting previously unselected package r-cran-matrixstats. 127s Preparing to unpack .../260-r-cran-matrixstats_1.2.0-1_arm64.deb ... 127s Unpacking r-cran-matrixstats (1.2.0-1) ... 127s Selecting previously unselected package r-bioc-matrixgenerics. 127s Preparing to unpack .../261-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 127s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 127s Selecting previously unselected package r-cran-abind. 127s Preparing to unpack .../262-r-cran-abind_1.4-5-2_all.deb ... 127s Unpacking r-cran-abind (1.4-5-2) ... 127s Selecting previously unselected package r-bioc-s4arrays. 127s Preparing to unpack .../263-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 127s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 127s Selecting previously unselected package r-bioc-sparsearray. 127s Preparing to unpack .../264-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 127s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 127s Selecting previously unselected package r-bioc-delayedarray. 128s Preparing to unpack .../265-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-genomicranges. 128s Preparing to unpack .../266-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 128s Selecting previously unselected package r-bioc-summarizedexperiment. 128s Preparing to unpack .../267-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 128s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-rhtslib. 128s Preparing to unpack .../268-r-bioc-rhtslib_2.4.1+dfsg-3build1_arm64.deb ... 128s Unpacking r-bioc-rhtslib (2.4.1+dfsg-3build1) ... 128s Selecting previously unselected package r-bioc-rsamtools. 128s Preparing to unpack .../269-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 128s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 128s Selecting previously unselected package r-bioc-genomicalignments. 128s Preparing to unpack .../270-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 128s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 128s Selecting previously unselected package r-cran-rjson. 128s Preparing to unpack .../271-r-cran-rjson_0.2.21-1_arm64.deb ... 128s Unpacking r-cran-rjson (0.2.21-1) ... 128s Selecting previously unselected package r-cran-restfulr. 128s Preparing to unpack .../272-r-cran-restfulr_0.0.15-1_arm64.deb ... 128s Unpacking r-cran-restfulr (0.0.15-1) ... 128s Selecting previously unselected package r-bioc-rtracklayer. 128s Preparing to unpack .../273-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 128s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 128s Selecting previously unselected package r-bioc-genomicfeatures. 128s Preparing to unpack .../274-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 128s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 128s Selecting previously unselected package r-cran-hwriter. 128s Preparing to unpack .../275-r-cran-hwriter_1.3.2.1-1_all.deb ... 128s Unpacking r-cran-hwriter (1.3.2.1-1) ... 128s Selecting previously unselected package r-cran-jpeg. 128s Preparing to unpack .../276-r-cran-jpeg_0.1-10-1_arm64.deb ... 128s Unpacking r-cran-jpeg (0.1-10-1) ... 128s Selecting previously unselected package r-cran-rcolorbrewer. 128s Preparing to unpack .../277-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 128s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 128s Selecting previously unselected package r-cran-deldir. 128s Preparing to unpack .../278-r-cran-deldir_2.0-4-1_arm64.deb ... 128s Unpacking r-cran-deldir (2.0-4-1) ... 128s Selecting previously unselected package r-cran-rcppeigen. 128s Preparing to unpack .../279-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 128s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 128s Selecting previously unselected package r-cran-interp. 128s Preparing to unpack .../280-r-cran-interp_1.1-6-1_arm64.deb ... 128s Unpacking r-cran-interp (1.1-6-1) ... 128s Selecting previously unselected package r-cran-mass. 128s Preparing to unpack .../281-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 128s Unpacking r-cran-mass 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(20231212ubuntu1) ... 135s Setting up r-bioc-xvector (0.42.0-1) ... 135s Setting up r-cran-sass (0.4.8+dfsg-1) ... 135s Setting up r-cran-dplyr (1.1.4-1) ... 135s Setting up r-cran-rsqlite (2.3.4-1) ... 135s Setting up r-cran-progress (1.2.3-1) ... 135s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 135s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 135s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 135s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 135s Setting up r-cran-fontawesome (0.5.2-1) ... 135s Setting up r-cran-latticeextra (0.6-30-1) ... 135s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 135s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 135s Setting up r-cran-tidyr (1.3.1-1) ... 135s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 135s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 135s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 135s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 135s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 135s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 135s Setting up r-bioc-annotationdbi (1.64.1-1) ... 135s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 135s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 135s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 135s Setting up r-bioc-genomicalignments (1.38.2-1) ... 135s Setting up r-cran-bookdown (0.37+dfsg-1) ... 135s Setting up r-bioc-rtracklayer (1.62.0-1) ... 135s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 135s Setting up r-bioc-shortread (1.60.0-2) ... 135s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 135s Setting up autopkgtest-satdep (0) ... 135s Processing triggers for man-db (2.12.0-3) ... 136s Processing triggers for install-info (7.1-3) ... 137s Processing triggers for libc-bin (2.39-0ubuntu2) ... 137s Processing triggers for tex-common (6.18) ... 137s Running updmap-sys. This may take some time... done. 137s Running mktexlsr /var/lib/texmf ... done. 137s Building format(s) --all. 175s This may take some time... done. 189s (Reading database ... 124916 files and directories currently installed.) 189s Removing autopkgtest-satdep (0) ... 189s autopkgtest [13:48:43]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 189s autopkgtest [13:48:43]: test pkg-r-autopkgtest: [----------------------- 190s Test: Try to load the R library Rsamtools 190s 190s R version 4.3.2 (2023-10-31) -- "Eye Holes" 190s Copyright (C) 2023 The R Foundation for Statistical Computing 190s Platform: aarch64-unknown-linux-gnu (64-bit) 190s 190s R is free software and comes with ABSOLUTELY NO WARRANTY. 190s You are welcome to redistribute it under certain conditions. 190s Type 'license()' or 'licence()' for distribution details. 190s 190s R is a collaborative project with many contributors. 190s Type 'contributors()' for more information and 190s 'citation()' on how to cite R or R packages in publications. 190s 190s Type 'demo()' for some demos, 'help()' for on-line help, or 190s 'help.start()' for an HTML browser interface to help. 190s Type 'q()' to quit R. 190s 190s > library('Rsamtools') 190s Loading required package: GenomeInfoDb 190s Loading required package: BiocGenerics 190s 190s Attaching package: ‘BiocGenerics’ 190s 190s The following objects are masked from ‘package:stats’: 190s 190s IQR, mad, sd, var, xtabs 190s 190s The following objects are masked from ‘package:base’: 190s 190s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 190s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 190s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 190s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 190s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 190s table, tapply, union, unique, unsplit, which.max, which.min 190s 190s Loading required package: S4Vectors 190s Loading required package: stats4 191s 191s Attaching package: ‘S4Vectors’ 191s 191s The following object is masked from ‘package:utils’: 191s 191s findMatches 191s 191s The following objects are masked from ‘package:base’: 191s 191s expand.grid, I, unname 191s 191s Loading required package: IRanges 192s Loading required package: GenomicRanges 193s Loading required package: Biostrings 193s Loading required package: XVector 193s 193s Attaching package: ‘Biostrings’ 193s 193s The following object is masked from ‘package:base’: 193s 193s strsplit 193s 193s > 193s > 193s Other tests are currently unsupported! 193s They will be progressively added. 194s autopkgtest [13:48:48]: test pkg-r-autopkgtest: -----------------------] 194s pkg-r-autopkgtest PASS 194s autopkgtest [13:48:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 194s autopkgtest [13:48:48]: @@@@@@@@@@@@@@@@@@@@ summary 194s pkg-r-autopkgtest PASS 212s Creating nova instance adt-noble-arm64-r-bioc-rsamtools-20240316-134534-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...