0s autopkgtest [17:42:20]: starting date and time: 2024-03-16 17:42:20+0000
  0s autopkgtest [17:42:20]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:42:20]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._l7szuaj/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-rots --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-2.secgroup --name adt-noble-arm64-r-bioc-rots-20240316-174220-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 98s autopkgtest [17:43:58]: testbed dpkg architecture: arm64
 98s autopkgtest [17:43:58]: testbed apt version: 2.7.12
 98s autopkgtest [17:43:58]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 99s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 99s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
100s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
100s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
100s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
100s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
100s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
100s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
100s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
100s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
100s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
101s Fetched 9060 kB in 2s (4874 kB/s)
102s Reading package lists...
106s Reading package lists...
107s Building dependency tree...
107s Reading state information...
107s Calculating upgrade...
108s The following packages will be REMOVED:
108s   libglib2.0-0 libssl3
108s The following NEW packages will be installed:
108s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
108s The following packages have been kept back:
108s   curl
108s The following packages will be upgraded:
108s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
108s   ubuntu-minimal ubuntu-standard
108s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
108s Need to get 4613 kB of archives.
108s After this operation, 211 kB of additional disk space will be used.
108s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
108s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
109s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
109s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
109s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
109s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
109s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
109s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
109s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
109s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
109s Fetched 4613 kB in 1s (6090 kB/s)
110s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
110s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
110s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
110s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
110s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
110s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
110s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
110s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
110s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
110s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
110s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
110s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
110s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
110s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
110s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
110s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
110s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
110s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
110s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
110s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
110s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  fwupd depends on libglib2.0-0 (>= 2.79.0).
110s  bolt depends on libglib2.0-0 (>= 2.56.0).
110s 
110s (Reading database ... 
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110s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
110s Selecting previously unselected package libglib2.0-0t64:arm64.
110s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
110s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
110s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
110s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
110s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
110s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
110s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
110s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
110s  wget depends on libssl3 (>= 3.0.0).
110s  u-boot-tools depends on libssl3 (>= 3.0.0).
110s  tnftp depends on libssl3 (>= 3.0.0).
110s  tcpdump depends on libssl3 (>= 3.0.0).
110s  systemd-resolved depends on libssl3 (>= 3.0.0).
110s  systemd depends on libssl3 (>= 3.0.0).
110s  sudo depends on libssl3 (>= 3.0.0).
110s  sbsigntool depends on libssl3 (>= 3.0.0).
110s  rsync depends on libssl3 (>= 3.0.0).
110s  python3-cryptography depends on libssl3 (>= 3.0.0).
110s  openssh-server depends on libssl3 (>= 3.0.10).
110s  openssh-client depends on libssl3 (>= 3.0.10).
110s  mtd-utils depends on libssl3 (>= 3.0.0).
110s  mokutil depends on libssl3 (>= 3.0.0).
110s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
110s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
110s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
110s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
110s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
110s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
110s  libnvme1 depends on libssl3 (>= 3.0.0).
110s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
110s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
110s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
110s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
110s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
110s  kmod depends on libssl3 (>= 3.0.0).
110s  dhcpcd-base depends on libssl3 (>= 3.0.0).
110s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
110s 
110s (Reading database ... 
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110s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
110s Selecting previously unselected package libssl3t64:arm64.
110s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
110s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
110s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
110s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
110s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
111s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
111s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
111s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
111s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
111s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
111s Unpacking ubuntu-minimal (1.536) over (1.535) ...
111s Selecting previously unselected package xdg-user-dirs.
111s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
111s Unpacking xdg-user-dirs (0.18-1) ...
111s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
111s Unpacking ubuntu-standard (1.536) over (1.535) ...
111s Setting up ubuntu-minimal (1.536) ...
111s Setting up xdg-user-dirs (0.18-1) ...
111s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
111s Setting up libtirpc-common (1.3.4+ds-1.1) ...
111s Setting up ubuntu-standard (1.536) ...
111s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
111s No schema files found: doing nothing.
111s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
111s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
111s Setting up openssl (3.0.13-0ubuntu1) ...
111s Setting up readline-common (8.2-3.1) ...
111s Processing triggers for man-db (2.12.0-3) ...
112s Processing triggers for install-info (7.1-3) ...
112s Processing triggers for libc-bin (2.39-0ubuntu2) ...
112s Reading package lists...
113s Building dependency tree...
113s Reading state information...
113s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
115s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
115s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
115s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
115s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
116s Reading package lists...
116s Reading package lists...
118s Building dependency tree...
118s Reading state information...
118s Calculating upgrade...
118s The following packages have been kept back:
118s   curl
118s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
120s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
124s autopkgtest [17:44:24]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
125s autopkgtest [17:44:25]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rots
127s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rots 1.30.0-1 (dsc) [2053 B]
127s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rots 1.30.0-1 (tar) [353 kB]
127s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rots 1.30.0-1 (diff) [2444 B]
127s gpgv: Signature made Thu Nov 30 08:19:22 2023 UTC
127s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
127s gpgv:                issuer "tille@debian.org"
127s gpgv: Can't check signature: No public key
127s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rots_1.30.0-1.dsc: no acceptable signature found
127s autopkgtest [17:44:27]: testing package r-bioc-rots version 1.30.0-1
127s autopkgtest [17:44:27]: build not needed
128s autopkgtest [17:44:28]: test pkg-r-autopkgtest: preparing testbed
130s Reading package lists...
130s Building dependency tree...
130s Reading state information...
131s Starting pkgProblemResolver with broken count: 0
131s Starting 2 pkgProblemResolver with broken count: 0
131s Done
131s The following additional packages will be installed:
131s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
131s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
131s   fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu
131s   gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran
131s   gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu
131s   icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
131s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
131s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
131s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
131s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
131s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4
131s   liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0
131s   libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0
131s   libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3
131s   libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64
131s   libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0
131s   libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7
131s   libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64
131s   linux-libc-dev littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin
131s   r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-rots
131s   r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
131s   r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
131s   r-cran-jsonlite r-cran-lifecycle r-cran-littler r-cran-magrittr
131s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
131s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp
131s   r-cran-rematch2 r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-tibble
131s   r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr rpcsvc-proto unzip
131s   x11-common xdg-utils zip zlib1g-dev
131s Suggested packages:
131s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
131s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
131s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev
131s   liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc
131s   libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib
131s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
131s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
131s   texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
131s   r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-s4vectors r-bioc-iranges
131s   r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools
131s   r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-covr
131s   r-cran-spelling r-cran-rstudioapi r-cran-rmarkdown r-cran-getopt
131s   r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable r-cran-ggplot2
131s   r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-stringi
131s   r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline r-cran-bench
131s   r-cran-blob r-cran-here r-cran-hms r-cran-htmltools r-cran-purrr
131s   r-cran-tidyr
131s Recommended packages:
131s   bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended
131s   r-doc-html r-cran-covr r-cran-cliapp r-cran-mockery r-cran-htmltools
131s   r-cran-htmlwidgets r-cran-knitr r-cran-rmarkdown r-cran-rstudioapi
131s   r-cran-whoami r-cran-gh r-cran-spelling r-cran-ggplot2 r-cran-lattice
131s   r-cran-unitizer r-cran-dbi r-cran-dplyr r-cran-rsqlite r-cran-httr
131s   r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-lubridate
131s   r-cran-cpp11 r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes
131s   r-cran-codetools r-cran-curl r-cran-webfakes r-cran-pingr r-cran-usethis
131s   r-cran-shiny r-cran-xml2 r-cran-data.table r-cran-formattable r-cran-bit64
131s   r-cran-generics r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl
131s   libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
131s The following packages will be REMOVED:
131s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
131s The following NEW packages will be installed:
131s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
131s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
131s   fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu
131s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
131s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
131s   gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev
131s   libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev
131s   libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
131s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
131s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
131s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev
131s   liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
131s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
131s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
131s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
131s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
131s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
131s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
131s   libxss1 libxt6t64 linux-libc-dev littler pkg-config pkg-r-autopkgtest
131s   pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase
131s   r-bioc-biocgenerics r-bioc-rots r-cran-brio r-cran-callr r-cran-cli
131s   r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-evaluate
131s   r-cran-fansi r-cran-fs r-cran-glue r-cran-jsonlite r-cran-lifecycle
131s   r-cran-littler r-cran-magrittr r-cran-pillar r-cran-pkgbuild
131s   r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise
131s   r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rematch2 r-cran-rlang
131s   r-cran-rprojroot r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs
131s   r-cran-waldo r-cran-withr rpcsvc-proto unzip x11-common xdg-utils zip
131s   zlib1g-dev
131s The following packages will be upgraded:
131s   curl
131s 1 upgraded, 149 newly installed, 5 to remove and 0 not upgraded.
131s Need to get 149 MB/149 MB of archives.
131s After this operation, 456 MB of additional disk space will be used.
131s Get:1 /tmp/autopkgtest.728SIN/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [736 B]
132s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
132s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
132s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
132s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
132s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
132s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
132s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
132s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
132s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
132s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
132s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
132s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
132s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
132s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
132s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
132s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
132s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
132s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
132s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
132s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
132s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
132s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
132s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
132s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
133s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
133s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
133s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
133s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
133s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
133s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
133s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
133s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
133s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
133s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
133s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
134s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
134s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
134s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
134s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
134s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
134s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
134s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
134s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
134s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
134s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
134s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
134s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
134s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
134s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
134s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
134s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
134s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
134s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
134s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
134s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
134s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
134s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
134s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
134s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
134s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
134s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
134s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
134s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
134s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
134s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
134s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
134s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
134s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
134s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
134s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
134s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
134s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
134s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
134s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
134s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
134s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
134s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
134s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
134s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
134s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
134s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
134s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
134s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
134s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
135s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
135s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
135s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
135s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
135s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
135s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
135s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
135s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
135s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
135s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
135s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
135s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
135s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
135s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
135s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
135s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
135s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
135s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
135s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
135s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
135s Get:106 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
136s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
136s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
136s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
136s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
136s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
136s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
136s Get:113 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
136s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
136s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
136s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
137s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
137s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
137s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rots arm64 1.30.0-1 [417 kB]
137s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB]
137s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB]
137s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
137s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB]
137s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB]
137s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
137s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
137s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
137s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
137s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
137s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
137s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
137s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
137s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
137s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
137s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
137s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
137s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
137s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
137s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
137s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
137s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
137s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
137s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB]
137s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
137s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB]
137s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
137s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
137s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
137s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB]
137s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB]
139s Preconfiguring packages ...
140s Fetched 149 MB in 6s (26.0 MB/s)
140s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
140s  wget depends on libpsl5 (>= 0.16.0).
140s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
140s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
140s 
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140s Removing libpsl5:arm64 (0.21.2-1build1) ...
140s Selecting previously unselected package libpsl5t64:arm64.
140s (Reading database ... 
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140s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
140s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
140s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
140s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
140s (Reading database ... 
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140s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
140s Selecting previously unselected package libcurl4t64:arm64.
140s (Reading database ... 
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140s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
140s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
140s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
140s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
140s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
140s 
140s (Reading database ... 
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140s Removing libpng16-16:arm64 (1.6.43-1) ...
141s Selecting previously unselected package libpng16-16t64:arm64.
141s (Reading database ... 
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141s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
141s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
141s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
141s  parted depends on libreadline8 (>= 6.0).
141s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
141s  gpgsm depends on libreadline8 (>= 6.0).
141s  gpgconf depends on libreadline8 (>= 6.0).
141s  gpg depends on libreadline8 (>= 6.0).
141s  gawk depends on libreadline8 (>= 6.0).
141s  fdisk depends on libreadline8 (>= 6.0).
141s 
141s (Reading database ... 
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141s Removing libreadline8:arm64 (8.2-3) ...
141s Selecting previously unselected package libreadline8t64:arm64.
141s (Reading database ... 
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141s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
141s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
141s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
141s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
141s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
141s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
141s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
141s  lsof depends on libtirpc3 (>= 1.0.2).
141s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
141s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
141s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
141s  iproute2 depends on libtirpc3 (>= 1.0.2).
141s 
141s (Reading database ... 
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141s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
141s Selecting previously unselected package libtirpc3t64:arm64.
141s (Reading database ... 
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141s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
141s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
141s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
141s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
141s Selecting previously unselected package libc-dev-bin.
141s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
141s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
141s Selecting previously unselected package linux-libc-dev:arm64.
141s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
141s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
141s Selecting previously unselected package libcrypt-dev:arm64.
141s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
141s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
141s Selecting previously unselected package libtirpc-dev:arm64.
141s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
141s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
142s Selecting previously unselected package libnsl-dev:arm64.
142s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
142s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
142s Selecting previously unselected package rpcsvc-proto.
142s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
142s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
142s Selecting previously unselected package libc6-dev:arm64.
142s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
142s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
142s Selecting previously unselected package libisl23:arm64.
142s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
142s Unpacking libisl23:arm64 (0.26-3) ...
142s Selecting previously unselected package libmpc3:arm64.
142s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
142s Unpacking libmpc3:arm64 (1.3.1-1) ...
142s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
142s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
142s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
142s Selecting previously unselected package cpp-13.
142s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
142s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
142s Selecting previously unselected package cpp-aarch64-linux-gnu.
142s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
142s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
142s Selecting previously unselected package cpp.
142s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
142s Unpacking cpp (4:13.2.0-7ubuntu1) ...
142s Selecting previously unselected package libcc1-0:arm64.
142s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
142s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
142s Selecting previously unselected package libgomp1:arm64.
142s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
142s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
142s Selecting previously unselected package libitm1:arm64.
142s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
142s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
142s Selecting previously unselected package libatomic1:arm64.
142s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
142s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
142s Selecting previously unselected package libasan8:arm64.
142s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
142s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
143s Selecting previously unselected package liblsan0:arm64.
143s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
143s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
143s Selecting previously unselected package libtsan2:arm64.
143s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
143s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
143s Selecting previously unselected package libubsan1:arm64.
143s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
143s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
143s Selecting previously unselected package libhwasan0:arm64.
143s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
143s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
143s Selecting previously unselected package libgcc-13-dev:arm64.
143s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
143s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
143s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
143s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
143s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
143s Selecting previously unselected package gcc-13.
143s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
143s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
143s Selecting previously unselected package gcc-aarch64-linux-gnu.
143s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
143s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
144s Selecting previously unselected package gcc.
144s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
144s Unpacking gcc (4:13.2.0-7ubuntu1) ...
144s Selecting previously unselected package libstdc++-13-dev:arm64.
144s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
144s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
144s Selecting previously unselected package g++-13-aarch64-linux-gnu.
144s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
144s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
144s Selecting previously unselected package g++-13.
144s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ...
144s Unpacking g++-13 (13.2.0-17ubuntu2) ...
144s Selecting previously unselected package g++-aarch64-linux-gnu.
144s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
144s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
144s Selecting previously unselected package g++.
144s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
144s Unpacking g++ (4:13.2.0-7ubuntu1) ...
144s Selecting previously unselected package build-essential.
144s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ...
144s Unpacking build-essential (12.10ubuntu1) ...
144s Selecting previously unselected package dctrl-tools.
144s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ...
144s Unpacking dctrl-tools (2.24-3build2) ...
144s Selecting previously unselected package fonts-dejavu-mono.
145s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ...
145s Unpacking fonts-dejavu-mono (2.37-8) ...
145s Selecting previously unselected package fonts-dejavu-core.
145s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ...
145s Unpacking fonts-dejavu-core (2.37-8) ...
145s Selecting previously unselected package fontconfig-config.
145s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
146s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
146s Selecting previously unselected package libfontconfig1:arm64.
147s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
147s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
147s Selecting previously unselected package fontconfig.
149s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
149s Unpacking fontconfig (2.15.0-1ubuntu1) ...
149s Selecting previously unselected package libgfortran5:arm64.
149s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
149s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
149s Selecting previously unselected package libgfortran-13-dev:arm64.
149s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
149s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
149s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
149s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
149s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
149s Selecting previously unselected package gfortran-13.
150s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
150s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
150s Selecting previously unselected package gfortran-aarch64-linux-gnu.
150s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
150s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
150s Selecting previously unselected package gfortran.
150s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
150s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
150s Selecting previously unselected package icu-devtools.
150s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ...
150s Unpacking icu-devtools (74.2-1ubuntu1) ...
150s Selecting previously unselected package libblas3:arm64.
150s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ...
150s Unpacking libblas3:arm64 (3.12.0-3) ...
150s Selecting previously unselected package libblas-dev:arm64.
150s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ...
150s Unpacking libblas-dev:arm64 (3.12.0-3) ...
150s Selecting previously unselected package libbz2-dev:arm64.
150s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ...
150s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
150s Selecting previously unselected package libpixman-1-0:arm64.
150s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ...
150s Unpacking libpixman-1-0:arm64 (0.42.2-1) ...
150s Selecting previously unselected package libxcb-render0:arm64.
150s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ...
150s Unpacking libxcb-render0:arm64 (1.15-1) ...
150s Selecting previously unselected package libxcb-shm0:arm64.
150s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ...
150s Unpacking libxcb-shm0:arm64 (1.15-1) ...
150s Selecting previously unselected package libxrender1:arm64.
150s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ...
150s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ...
150s Selecting previously unselected package libcairo2:arm64.
150s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ...
150s Unpacking libcairo2:arm64 (1.18.0-1) ...
150s Selecting previously unselected package libdatrie1:arm64.
150s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ...
150s Unpacking libdatrie1:arm64 (0.2.13-3) ...
150s Selecting previously unselected package libdeflate0:arm64.
151s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ...
151s Unpacking libdeflate0:arm64 (1.19-1) ...
151s Selecting previously unselected package libgraphite2-3:arm64.
151s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ...
151s Unpacking libgraphite2-3:arm64 (1.3.14-2) ...
151s Selecting previously unselected package libharfbuzz0b:arm64.
151s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ...
151s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ...
151s Selecting previously unselected package x11-common.
151s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ...
151s Unpacking x11-common (1:7.7+23ubuntu2) ...
151s Selecting previously unselected package libice6:arm64.
151s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ...
151s Unpacking libice6:arm64 (2:1.0.10-1build2) ...
151s Selecting previously unselected package libicu-dev:arm64.
151s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ...
151s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ...
151s Selecting previously unselected package libjpeg-turbo8:arm64.
151s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ...
151s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
151s Selecting previously unselected package libjpeg-turbo8-dev:arm64.
151s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ...
151s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
151s Selecting previously unselected package libjpeg8:arm64.
152s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ...
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152s Selecting previously unselected package libjpeg8-dev:arm64.
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152s Selecting previously unselected package libjpeg-dev:arm64.
152s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ...
152s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ...
152s Selecting previously unselected package liblapack3:arm64.
152s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ...
152s Unpacking liblapack3:arm64 (3.12.0-3) ...
152s Selecting previously unselected package liblapack-dev:arm64.
152s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ...
152s Unpacking liblapack-dev:arm64 (3.12.0-3) ...
152s Selecting previously unselected package liblerc4:arm64.
152s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ...
152s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
152s Selecting previously unselected package libncurses-dev:arm64.
152s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ...
152s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
153s Selecting previously unselected package libthai-data.
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153s Selecting previously unselected package libthai0:arm64.
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153s Selecting previously unselected package libpango-1.0-0:arm64.
153s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ...
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153s Selecting previously unselected package libpangoft2-1.0-0:arm64.
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153s Selecting previously unselected package libpangocairo-1.0-0:arm64.
153s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ...
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153s Selecting previously unselected package libpaper1:arm64.
153s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ...
153s Unpacking libpaper1:arm64 (1.1.29) ...
153s Selecting previously unselected package libpaper-utils.
154s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ...
154s Unpacking libpaper-utils (1.1.29) ...
154s Selecting previously unselected package libpcre2-16-0:arm64.
154s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ...
154s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
154s Selecting previously unselected package libpcre2-32-0:arm64.
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154s Selecting previously unselected package libpcre2-posix3:arm64.
154s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ...
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154s Selecting previously unselected package libpcre2-dev:arm64.
154s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ...
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154s Selecting previously unselected package libpkgconf3:arm64.
154s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ...
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154s Selecting previously unselected package zlib1g-dev:arm64.
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154s Selecting previously unselected package libpng-dev:arm64.
155s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ...
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155s Selecting previously unselected package libreadline-dev:arm64.
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155s Selecting previously unselected package libsharpyuv0:arm64.
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155s Selecting previously unselected package libsm6:arm64.
155s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ...
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155s Selecting previously unselected package libtcl8.6:arm64.
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155s Selecting previously unselected package libjbig0:arm64.
155s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ...
155s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ...
155s Selecting previously unselected package libwebp7:arm64.
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155s Selecting previously unselected package libtiff6:arm64.
155s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ...
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155s Selecting previously unselected package libxft2:arm64.
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155s Selecting previously unselected package libxss1:arm64.
155s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ...
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155s Selecting previously unselected package libtk8.6:arm64.
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155s Preparing to unpack .../096-zip_3.0-13_arm64.deb ...
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156s Preparing to unpack .../097-unzip_6.0-28ubuntu3_arm64.deb ...
156s Unpacking unzip (6.0-28ubuntu3) ...
156s Selecting previously unselected package xdg-utils.
156s Preparing to unpack .../098-xdg-utils_1.1.3-4.1ubuntu3_all.deb ...
156s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ...
156s Selecting previously unselected package r-base-core.
156s Preparing to unpack .../099-r-base-core_4.3.3-2build1_arm64.deb ...
156s Unpacking r-base-core (4.3.3-2build1) ...
156s Selecting previously unselected package r-cran-littler.
157s Preparing to unpack .../100-r-cran-littler_0.3.19-1_arm64.deb ...
157s Unpacking r-cran-littler (0.3.19-1) ...
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157s Selecting previously unselected package pkgconf:arm64.
157s Preparing to unpack .../103-pkgconf_1.8.1-2_arm64.deb ...
157s Unpacking pkgconf:arm64 (1.8.1-2) ...
157s Selecting previously unselected package pkg-config:arm64.
157s Preparing to unpack .../104-pkg-config_1.8.1-2_arm64.deb ...
157s Unpacking pkg-config:arm64 (1.8.1-2) ...
157s Selecting previously unselected package liblzma-dev:arm64.
157s Preparing to unpack .../105-liblzma-dev_5.4.5-0.3_arm64.deb ...
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157s Selecting previously unselected package r-base-dev.
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157s Selecting previously unselected package pkg-r-autopkgtest.
157s Preparing to unpack .../107-pkg-r-autopkgtest_20231212ubuntu1_all.deb ...
157s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ...
157s Selecting previously unselected package r-bioc-biocgenerics.
157s Preparing to unpack .../108-r-bioc-biocgenerics_0.48.1-2_all.deb ...
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157s Selecting previously unselected package r-bioc-biobase.
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157s Unpacking r-bioc-biobase (2.62.0-1) ...
157s Selecting previously unselected package r-cran-pkgkitten.
157s Preparing to unpack .../110-r-cran-pkgkitten_0.2.3-1_all.deb ...
157s Unpacking r-cran-pkgkitten (0.2.3-1) ...
157s Selecting previously unselected package r-cran-rcpp.
157s Preparing to unpack .../111-r-cran-rcpp_1.0.12-1_arm64.deb ...
157s Unpacking r-cran-rcpp (1.0.12-1) ...
157s Selecting previously unselected package r-bioc-rots.
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157s Selecting previously unselected package r-cran-brio.
157s Preparing to unpack .../113-r-cran-brio_1.1.4-1_arm64.deb ...
157s Unpacking r-cran-brio (1.1.4-1) ...
157s Selecting previously unselected package r-cran-ps.
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157s Selecting previously unselected package r-cran-r6.
158s Preparing to unpack .../115-r-cran-r6_2.5.1-1_all.deb ...
158s Unpacking r-cran-r6 (2.5.1-1) ...
158s Selecting previously unselected package r-cran-processx.
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158s Selecting previously unselected package r-cran-callr.
158s Preparing to unpack .../117-r-cran-callr_3.7.3-2_all.deb ...
158s Unpacking r-cran-callr (3.7.3-2) ...
158s Selecting previously unselected package r-cran-cli.
158s Preparing to unpack .../118-r-cran-cli_3.6.2-1_arm64.deb ...
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158s Selecting previously unselected package r-cran-crayon.
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158s Selecting previously unselected package r-cran-diffobj.
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158s Unpacking r-cran-diffobj (0.3.5-1) ...
158s Selecting previously unselected package r-cran-digest.
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158s Selecting previously unselected package r-cran-fansi.
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158s Selecting previously unselected package r-cran-fs.
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158s Selecting previously unselected package r-cran-glue.
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158s Selecting previously unselected package r-cran-jsonlite.
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158s Selecting previously unselected package r-cran-rlang.
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158s Selecting previously unselected package r-cran-lifecycle.
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159s Selecting previously unselected package r-cran-magrittr.
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159s Selecting previously unselected package r-cran-pillar.
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159s Selecting previously unselected package r-cran-pkgbuild.
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162s Selecting previously unselected package r-cran-testthat.
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162s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
162s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
162s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ...
162s Setting up libpaper1:arm64 (1.1.29) ...
163s 
163s Creating config file /etc/papersize with new version
163s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
163s Setting up libxrender1:arm64 (1:0.9.10-1.1) ...
163s Setting up libdatrie1:arm64 (0.2.13-3) ...
163s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
163s Setting up libxcb-render0:arm64 (1.15-1) ...
163s Setting up unzip (6.0-28ubuntu3) ...
163s Setting up x11-common (1:7.7+23ubuntu2) ...
164s Setting up libpsl5t64:arm64 (0.21.2-1.1) ...
164s Setting up libdeflate0:arm64 (1.19-1) ...
164s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ...
164s Setting up libxcb-shm0:arm64 (1.15-1) ...
164s Setting up libpaper-utils (1.1.29) ...
164s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ...
164s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ...
164s Setting up zip (3.0-13) ...
164s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ...
164s Setting up libblas3:arm64 (3.12.0-3) ...
164s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
164s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
164s Setting up libpkgconf3:arm64 (1.8.1-2) ...
164s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ...
164s Setting up fonts-dejavu-mono (2.37-8) ...
164s Setting up libpng16-16t64:arm64 (1.6.43-3) ...
164s Setting up libmpc3:arm64 (1.3.1-1) ...
164s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ...
164s Setting up icu-devtools (74.2-1ubuntu1) ...
164s Setting up fonts-dejavu-core (2.37-8) ...
164s Setting up pkgconf-bin (1.8.1-2) ...
164s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ...
164s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libwebp7:arm64 (1.3.2-0.4) ...
164s Setting up libreadline8t64:arm64 (8.2-3.1) ...
164s Setting up liblzma-dev:arm64 (5.4.5-0.3) ...
164s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ...
164s Setting up libnsl-dev:arm64 (1.3.0-3) ...
164s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ...
164s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libharfbuzz0b:arm64 (8.3.0-2) ...
164s Setting up libthai-data (0.1.29-2) ...
164s Setting up libxss1:arm64 (1:1.2.3-1build2) ...
164s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libisl23:arm64 (0.26-3) ...
164s Setting up libc-dev-bin (2.39-0ubuntu2) ...
164s Setting up xdg-utils (1.1.3-4.1ubuntu3) ...
164s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
164s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ...
164s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libblas-dev:arm64 (3.12.0-3) ...
164s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
164s Setting up dctrl-tools (2.24-3build2) ...
164s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ...
164s Setting up libjpeg8:arm64 (8c-2ubuntu11) ...
164s Setting up libice6:arm64 (2:1.0.10-1build2) ...
164s Setting up liblapack3:arm64 (3.12.0-3) ...
164s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
164s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
164s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
164s Setting up fontconfig-config (2.15.0-1ubuntu1) ...
164s Setting up pkgconf:arm64 (1.8.1-2) ...
164s Setting up libthai0:arm64 (0.1.29-2) ...
164s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
164s Setting up liblapack-dev:arm64 (3.12.0-3) ...
164s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
164s Setting up pkg-config:arm64 (1.8.1-2) ...
164s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
164s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ...
164s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ...
164s Setting up curl (8.5.0-2ubuntu7) ...
164s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
164s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
164s Setting up libsm6:arm64 (2:1.2.3-1build2) ...
164s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ...
164s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
164s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ...
164s Setting up fontconfig (2.15.0-1ubuntu1) ...
166s Regenerating fonts cache... done.
166s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ...
166s Setting up libxft2:arm64 (2.3.6-1) ...
166s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
166s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
166s Setting up cpp-13 (13.2.0-17ubuntu2) ...
166s Setting up libtk8.6:arm64 (8.6.13-2) ...
166s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
166s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
166s Setting up libreadline-dev:arm64 (8.2-3.1) ...
166s Setting up libcairo2:arm64 (1.18.0-1) ...
166s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ...
166s Setting up gcc-13 (13.2.0-17ubuntu2) ...
166s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ...
166s Setting up cpp (4:13.2.0-7ubuntu1) ...
166s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ...
166s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ...
166s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
166s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
166s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
166s Setting up g++-13 (13.2.0-17ubuntu2) ...
166s Setting up libpng-dev:arm64 (1.6.43-3) ...
166s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
166s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
166s Setting up gcc (4:13.2.0-7ubuntu1) ...
166s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
166s Setting up r-base-core (4.3.3-2build1) ...
166s 
166s Creating config file /etc/R/Renviron with new version
167s Setting up r-cran-crayon (1.5.2-1) ...
167s Setting up r-cran-ps (1.7.6-1) ...
167s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
167s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
167s Setting up r-cran-r6 (2.5.1-1) ...
167s Setting up r-cran-pkgkitten (0.2.3-1) ...
167s Setting up r-cran-magrittr (2.0.3-1) ...
167s Setting up r-cran-littler (0.3.19-1) ...
167s Setting up r-cran-fs (1.6.3+dfsg-1) ...
167s Setting up r-cran-rcpp (1.0.12-1) ...
167s Setting up r-cran-brio (1.1.4-1) ...
167s Setting up r-cran-diffobj (0.3.5-1) ...
167s Setting up r-bioc-biocgenerics (0.48.1-2) ...
167s Setting up r-cran-rlang (1.1.3-1) ...
167s Setting up littler (0.3.19-1) ...
167s Setting up r-cran-withr (2.5.0-1) ...
167s Setting up r-cran-processx (3.8.3-1) ...
167s Setting up r-cran-praise (1.0.0-4build1) ...
167s Setting up r-cran-digest (0.6.34-1) ...
167s Setting up r-cran-evaluate (0.23-1) ...
167s Setting up r-cran-fansi (1.0.5-1) ...
167s Setting up r-cran-glue (1.7.0-1) ...
167s Setting up r-cran-cli (3.6.2-1) ...
167s Setting up gfortran (4:13.2.0-7ubuntu1) ...
167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
167s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
167s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
167s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
167s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
167s Setting up r-cran-rprojroot (2.0.4-1) ...
167s Setting up r-bioc-biobase (2.62.0-1) ...
167s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
167s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
167s Setting up r-cran-utf8 (1.2.4-1) ...
167s Setting up r-bioc-rots (1.30.0-1) ...
167s Setting up g++ (4:13.2.0-7ubuntu1) ...
167s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
167s Setting up build-essential (12.10ubuntu1) ...
167s Setting up r-cran-vctrs (0.6.5-1) ...
167s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
167s Setting up r-base-dev (4.3.3-2build1) ...
167s Setting up r-cran-callr (3.7.3-2) ...
167s Setting up r-cran-desc (1.4.3-1) ...
167s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
167s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
167s Setting up r-cran-pkgbuild (1.4.3-1) ...
167s Setting up r-cran-pkgload (1.3.4-1) ...
167s Setting up r-cran-rematch2 (2.1.2-2build1) ...
167s Setting up r-cran-waldo (0.5.2-1build1) ...
167s Setting up r-cran-testthat (3.2.1-1) ...
167s Setting up autopkgtest-satdep (0) ...
167s Processing triggers for man-db (2.12.0-3) ...
168s Processing triggers for install-info (7.1-3) ...
168s Processing triggers for libc-bin (2.39-0ubuntu2) ...
177s (Reading database ... 84866 files and directories currently installed.)
177s Removing autopkgtest-satdep (0) ...
178s autopkgtest [17:45:18]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
178s autopkgtest [17:45:18]: test pkg-r-autopkgtest: [-----------------------
179s Test: Try to load the R library ROTS
179s 
179s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
179s Copyright (C) 2024 The R Foundation for Statistical Computing
179s Platform: aarch64-unknown-linux-gnu (64-bit)
179s 
179s R is free software and comes with ABSOLUTELY NO WARRANTY.
179s You are welcome to redistribute it under certain conditions.
179s Type 'license()' or 'licence()' for distribution details.
179s 
179s R is a collaborative project with many contributors.
179s Type 'contributors()' for more information and
179s 'citation()' on how to cite R or R packages in publications.
179s 
179s Type 'demo()' for some demos, 'help()' for on-line help, or
179s 'help.start()' for an HTML browser interface to help.
179s Type 'q()' to quit R.
179s 
179s > library('ROTS')
180s > 
180s > 
180s Other tests are currently unsupported!
180s They will be progressively added.
180s autopkgtest [17:45:20]: test pkg-r-autopkgtest: -----------------------]
181s autopkgtest [17:45:21]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
181s pkg-r-autopkgtest    PASS
181s autopkgtest [17:45:21]: @@@@@@@@@@@@@@@@@@@@ summary
181s pkg-r-autopkgtest    PASS
192s Creating nova instance adt-noble-arm64-r-bioc-rots-20240316-174220-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...