0s autopkgtest [14:58:52]: starting date and time: 2024-03-16 14:58:52+0000 0s autopkgtest [14:58:52]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [14:58:52]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8m0ewv_h/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rhtslib,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-rhtslib --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rhtslib/2.4.1+dfsg-3build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-29.secgroup --name adt-noble-arm64-r-bioc-rhtslib-20240316-145852-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 117s autopkgtest [15:00:49]: testbed dpkg architecture: arm64 117s autopkgtest [15:00:49]: testbed apt version: 2.7.12 117s autopkgtest [15:00:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 120s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 120s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3694 kB] 122s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 122s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 122s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 122s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 122s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 122s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4005 kB] 123s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 123s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 123s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 132s Fetched 9095 kB in 6s (1471 kB/s) 133s Reading package lists... 139s Reading package lists... 140s Building dependency tree... 140s Reading state information... 141s Calculating upgrade... 142s The following packages will be REMOVED: 142s libssl3 142s The following NEW packages will be installed: 142s libssl3t64 142s The following packages have been kept back: 142s curl 142s The following packages will be upgraded: 142s openssl 143s 1 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 143s Need to get 2753 kB of archives. 143s After this operation, 72.7 kB of additional disk space will be used. 143s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 143s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 144s Fetched 2753 kB in 1s (3170 kB/s) 145s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 145s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 145s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 145s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 145s wget depends on libssl3 (>= 3.0.0). 145s u-boot-tools depends on libssl3 (>= 3.0.0). 145s tnftp depends on libssl3 (>= 3.0.0). 145s tcpdump depends on libssl3 (>= 3.0.0). 145s systemd-resolved depends on libssl3 (>= 3.0.0). 145s systemd depends on libssl3 (>= 3.0.0). 145s sudo depends on libssl3 (>= 3.0.0). 145s sbsigntool depends on libssl3 (>= 3.0.0). 145s rsync depends on libssl3 (>= 3.0.0). 145s python3-cryptography depends on libssl3 (>= 3.0.0). 145s openssh-server depends on libssl3 (>= 3.0.10). 145s openssh-client depends on libssl3 (>= 3.0.10). 145s mtd-utils depends on libssl3 (>= 3.0.0). 145s mokutil depends on libssl3 (>= 3.0.0). 145s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 145s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 145s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 145s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 146s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 146s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 146s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 146s libnvme1 depends on libssl3 (>= 3.0.0). 146s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 146s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 146s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 146s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 146s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 146s kmod depends on libssl3 (>= 3.0.0). 146s dhcpcd-base depends on libssl3 (>= 3.0.0). 146s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 146s 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 146s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 146s Selecting previously unselected package libssl3t64:arm64. 146s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 146s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 146s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 146s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 146s Setting up openssl (3.0.13-0ubuntu1) ... 146s Processing triggers for man-db (2.12.0-3) ... 148s Processing triggers for libc-bin (2.39-0ubuntu2) ... 149s Reading package lists... 150s Building dependency tree... 150s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 152s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 152s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 152s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 152s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 160s Reading package lists... 160s Reading package lists... 161s Building dependency tree... 161s Reading state information... 163s Calculating upgrade... 164s The following packages have been kept back: 164s curl 164s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 164s Reading package lists... 165s Building dependency tree... 165s Reading state information... 167s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 171s autopkgtest [15:01:43]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 171s autopkgtest [15:01:43]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rhtslib 174s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rhtslib 2.4.1+dfsg-3build1 (dsc) [2269 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rhtslib 2.4.1+dfsg-3build1 (tar) [3787 kB] 174s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe r-bioc-rhtslib 2.4.1+dfsg-3build1 (diff) [4508 B] 174s gpgv: Signature made Sat Mar 16 06:57:34 2024 UTC 174s gpgv: using RSA key AC483F68DE728F43F2202FCA568D30F321B2133D 174s gpgv: issuer "steve.langasek@ubuntu.com" 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rhtslib_2.4.1+dfsg-3build1.dsc: no acceptable signature found 175s autopkgtest [15:01:47]: testing package r-bioc-rhtslib version 2.4.1+dfsg-3build1 176s autopkgtest [15:01:48]: build not needed 204s autopkgtest [15:02:16]: test pkg-r-autopkgtest: preparing testbed 206s Reading package lists... 206s Building dependency tree... 206s Reading state information... 207s Starting pkgProblemResolver with broken count: 0 208s Starting 2 pkgProblemResolver with broken count: 0 208s Done 209s The following additional packages will be installed: 209s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 209s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 209s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 209s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 209s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 209s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 209s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 209s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev 209s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 209s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 209s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 209s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 209s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 209s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 209s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 209s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 209s libjs-popper.js libjs-prettify libjs-sifter.js 209s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 209s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 209s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 209s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 209s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 209s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 209s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 209s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 209s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 209s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 209s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 209s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 209s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-rhtslib r-bioc-zlibbioc 209s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-bslib 209s r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest 209s r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 209s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 209s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 209s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 209s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 209s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr 209s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable 209s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 209s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 209s xdg-utils zip zlib1g-dev 209s Suggested packages: 209s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 209s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 209s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 209s | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs 209s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 209s readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 209s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 209s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 209s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 209s r-base-html texlive-plain-generic texlive-fonts-recommended 209s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-biobase 209s r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges r-bioc-delayedarray 209s r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy 209s r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-rstudioapi r-cran-markdown 209s r-cran-testthat r-cran-getopt r-cran-covr r-cran-httr r-cran-roxygen2 209s r-cran-inline r-cran-callr r-cran-plm r-cran-zoo r-cran-survival debhelper 209s ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec 209s texlive-binaries-sse2 hintview texlive-latex-base-doc wp2latex 209s Recommended packages: 209s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 209s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-testthat 209s r-cran-curl r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi 209s r-cran-miniui r-cran-rsconnect r-cran-tibble r-cran-testit r-cran-tufte 209s r-cran-xml2 r-cran-webshot r-cran-ggplot2 r-cran-thematic r-cran-callr 209s r-cran-covr r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot 209s r-cran-whoami r-cran-lattice r-cran-dplyr r-cran-rsvg r-cran-pillar 209s r-cran-spelling r-cran-dbi r-cran-rsqlite r-cran-waldo r-cran-cairo 209s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 209s r-cran-codetools r-cran-formatr r-cran-gridsvg r-cran-jpeg r-cran-magick 209s r-cran-png r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-svglite 209s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-future r-cran-purrr 209s r-cran-usethis r-cran-dygraphs r-cran-bit64 r-cran-generics r-cran-pkgdown 209s r-cran-zeallot r-cran-renv r-cran-runit lmodern dvisvgm 209s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 209s x11-xserver-utils 210s The following packages will be REMOVED: 210s libcurl4 libpsl5 210s The following NEW packages will be installed: 210s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 210s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 210s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 210s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 210s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 210s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 210s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 210s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 210s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 210s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 210s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 210s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 210s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 210s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 210s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 210s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 210s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 210s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 210s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 210s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 210s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 210s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 210s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 210s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 210s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 210s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 210s libxss1 libxt6 libzzip-0-13 linux-libc-dev littler node-bootstrap-sass 210s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 210s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 210s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-rhtslib r-bioc-zlibbioc 210s r-cran-base64enc r-cran-biocmanager r-cran-bookdown r-cran-bslib 210s r-cran-cachem r-cran-cli r-cran-commonmark r-cran-crayon r-cran-digest 210s r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fontawesome r-cran-fs 210s r-cran-glue r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 210s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lifecycle r-cran-littler 210s r-cran-magrittr r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises 210s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown 210s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr 210s r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable 210s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 210s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 210s xdg-utils zip zlib1g-dev 210s The following packages will be upgraded: 210s curl 210s 1 upgraded, 207 newly installed, 2 to remove and 0 not upgraded. 210s Need to get 315 MB/315 MB of archives. 210s After this operation, 1041 MB of additional disk space will be used. 210s Get:1 /tmp/autopkgtest.rpQpYy/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [748 B] 210s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 210s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 211s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 211s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 211s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 211s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 211s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 211s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 211s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 211s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 211s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 211s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 211s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 211s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 211s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 211s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 211s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 211s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 211s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 211s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 211s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 212s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 212s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 212s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 212s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 212s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 212s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 213s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 213s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 213s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 213s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 213s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 213s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 213s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 213s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 213s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 213s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 213s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 213s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 213s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 213s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 213s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 213s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 213s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 213s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 214s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 214s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 214s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 214s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 214s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 214s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 214s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 214s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 214s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 214s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 214s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 214s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 214s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 214s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 214s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 214s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 214s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 214s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 214s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 214s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 214s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 214s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 214s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 214s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 214s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 214s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 214s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 215s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 215s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 215s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 215s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 215s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 215s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 215s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 215s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 215s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 215s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 215s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 215s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 215s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 215s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 215s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 215s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 215s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 215s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 215s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 215s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 215s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 215s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 215s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 216s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 216s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 216s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 216s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 216s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 216s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 216s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 216s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 216s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 216s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 216s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 216s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 216s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 216s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 216s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 216s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 216s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 216s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 216s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 216s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 216s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 216s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 216s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 216s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 216s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 216s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 216s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 216s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 216s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 216s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 216s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 217s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 217s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 217s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 217s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 217s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 217s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 217s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 217s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 217s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 217s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 217s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 218s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 218s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 218s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 218s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 218s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 218s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 218s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 220s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 220s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 220s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 220s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 220s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 220s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 220s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 220s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 220s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 220s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 220s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 220s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 220s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 220s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 220s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 220s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 220s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 220s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 220s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 220s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 220s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 220s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 220s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 220s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 220s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 220s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 220s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 220s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 220s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 220s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 220s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 220s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 221s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 221s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 221s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 221s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 221s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 221s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 221s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 221s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 221s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 221s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 221s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 221s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 221s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 221s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 221s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 221s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 221s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 221s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 221s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 221s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 222s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 222s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 222s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 222s Get:201 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 222s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 222s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 224s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 224s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 228s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 228s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 228s Get:208 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-3build1 [1358 kB] 230s Preconfiguring packages ... 230s Fetched 315 MB in 18s (17.7 MB/s) 230s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 230s wget depends on libpsl5 (>= 0.16.0). 230s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 230s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 230s 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75852 files and directories currently installed.) 230s Removing libpsl5:arm64 (0.21.2-1build1) ... 230s Selecting previously unselected package libpsl5t64:arm64. 230s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75847 files and directories currently installed.) 230s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 230s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 230s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 230s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75853 files and directories currently installed.) 231s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 231s Selecting previously unselected package libcurl4t64:arm64. 231s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75848 files and directories currently installed.) 231s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 231s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 231s Selecting previously unselected package libc-dev-bin. 231s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 231s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 231s Selecting previously unselected package linux-libc-dev:arm64. 231s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 231s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 232s Selecting previously unselected package libcrypt-dev:arm64. 232s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 232s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 232s Selecting previously unselected package libtirpc-dev:arm64. 232s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 232s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 232s Selecting previously unselected package libnsl-dev:arm64. 232s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 232s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 232s Selecting previously unselected package rpcsvc-proto. 232s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 232s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 232s Selecting previously unselected package libc6-dev:arm64. 232s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 232s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 233s Selecting previously unselected package libisl23:arm64. 233s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 233s Unpacking libisl23:arm64 (0.26-3) ... 233s Selecting previously unselected package libmpc3:arm64. 233s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 233s Unpacking libmpc3:arm64 (1.3.1-1) ... 233s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 233s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 233s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 234s Selecting previously unselected package cpp-13. 234s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 234s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 234s Selecting previously unselected package cpp-aarch64-linux-gnu. 234s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 234s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 234s Selecting previously unselected package cpp. 234s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 234s Unpacking cpp (4:13.2.0-7ubuntu1) ... 234s Selecting previously unselected package libcc1-0:arm64. 234s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 234s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 234s Selecting previously unselected package libgomp1:arm64. 234s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 234s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 234s Selecting previously unselected package libitm1:arm64. 234s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 234s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libatomic1:arm64. 235s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libasan8:arm64. 235s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package liblsan0:arm64. 235s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 235s Selecting previously unselected package libtsan2:arm64. 235s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 235s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libubsan1:arm64. 236s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libhwasan0:arm64. 236s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 236s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 236s Selecting previously unselected package libgcc-13-dev:arm64. 236s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 236s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 236s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 236s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 236s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 238s Selecting previously unselected package gcc-13. 238s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 238s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 238s Selecting previously unselected package gcc-aarch64-linux-gnu. 238s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 238s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 238s Selecting previously unselected package gcc. 238s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 238s Unpacking gcc (4:13.2.0-7ubuntu1) ... 238s Selecting previously unselected package libstdc++-13-dev:arm64. 238s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 238s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 239s Selecting previously unselected package g++-13-aarch64-linux-gnu. 239s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 239s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 240s Selecting previously unselected package g++-13. 240s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 240s Unpacking g++-13 (13.2.0-17ubuntu2) ... 240s Selecting previously unselected package g++-aarch64-linux-gnu. 240s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 240s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 240s Selecting previously unselected package g++. 240s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 240s Unpacking g++ (4:13.2.0-7ubuntu1) ... 240s Selecting previously unselected package build-essential. 240s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 240s Unpacking build-essential (12.10ubuntu1) ... 240s Selecting previously unselected package dctrl-tools. 240s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 240s Unpacking dctrl-tools (2.24-3build2) ... 240s Selecting previously unselected package fonts-dejavu-mono. 240s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 240s Unpacking fonts-dejavu-mono (2.37-8) ... 241s Selecting previously unselected package fonts-dejavu-core. 241s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 241s Unpacking fonts-dejavu-core (2.37-8) ... 241s Selecting previously unselected package fontconfig-config. 241s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 241s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 241s Selecting previously unselected package libfontconfig1:arm64. 241s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 241s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 242s Selecting previously unselected package fontconfig. 242s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 242s Unpacking fontconfig (2.15.0-1ubuntu1) ... 242s Selecting previously unselected package fonts-font-awesome. 242s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 242s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 242s Selecting previously unselected package fonts-glyphicons-halflings. 242s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 242s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 242s Selecting previously unselected package fonts-lmodern. 242s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 242s Unpacking fonts-lmodern (2.005-1) ... 242s Selecting previously unselected package fonts-mathjax. 242s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 242s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 243s Selecting previously unselected package libgfortran5:arm64. 243s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 243s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 243s Selecting previously unselected package libgfortran-13-dev:arm64. 243s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 243s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 243s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 243s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 243s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 244s Selecting previously unselected package gfortran-13. 244s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 244s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 244s Selecting previously unselected package gfortran-aarch64-linux-gnu. 244s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 244s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 244s Selecting previously unselected package gfortran. 244s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 244s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 244s Selecting previously unselected package icu-devtools. 244s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 244s Unpacking icu-devtools (74.2-1ubuntu1) ... 244s Selecting previously unselected package javascript-common. 244s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 244s Unpacking javascript-common (11+nmu1) ... 245s Selecting previously unselected package libio-string-perl. 245s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 245s Unpacking libio-string-perl (1.08-4) ... 245s Selecting previously unselected package liblatex-tounicode-perl. 245s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 245s Unpacking liblatex-tounicode-perl (0.54-2) ... 245s Selecting previously unselected package libbibtex-parser-perl. 245s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 245s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 245s Selecting previously unselected package libblas3:arm64. 245s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 245s Unpacking libblas3:arm64 (3.12.0-3) ... 245s Selecting previously unselected package libblas-dev:arm64. 245s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 245s Unpacking libblas-dev:arm64 (3.12.0-3) ... 245s Selecting previously unselected package libbz2-dev:arm64. 245s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 245s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 245s Selecting previously unselected package libpixman-1-0:arm64. 245s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_arm64.deb ... 245s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 245s Selecting previously unselected package libxcb-render0:arm64. 245s Preparing to unpack .../059-libxcb-render0_1.15-1_arm64.deb ... 245s Unpacking libxcb-render0:arm64 (1.15-1) ... 245s Selecting previously unselected package libxcb-shm0:arm64. 245s Preparing to unpack .../060-libxcb-shm0_1.15-1_arm64.deb ... 245s Unpacking libxcb-shm0:arm64 (1.15-1) ... 245s Selecting previously unselected package libxrender1:arm64. 245s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 245s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 246s Selecting previously unselected package libcairo2:arm64. 246s Preparing to unpack .../062-libcairo2_1.18.0-1_arm64.deb ... 246s Unpacking libcairo2:arm64 (1.18.0-1) ... 246s Selecting previously unselected package libdatrie1:arm64. 246s Preparing to unpack .../063-libdatrie1_0.2.13-3_arm64.deb ... 246s Unpacking libdatrie1:arm64 (0.2.13-3) ... 246s Selecting previously unselected package libdeflate0:arm64. 246s Preparing to unpack .../064-libdeflate0_1.19-1_arm64.deb ... 246s Unpacking libdeflate0:arm64 (1.19-1) ... 246s Selecting previously unselected package libgraphite2-3:arm64. 246s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_arm64.deb ... 246s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 246s Selecting previously unselected package libharfbuzz0b:arm64. 246s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_arm64.deb ... 246s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 246s Selecting previously unselected package x11-common. 246s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 246s Unpacking x11-common (1:7.7+23ubuntu2) ... 246s Selecting previously unselected package libice6:arm64. 246s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_arm64.deb ... 246s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 246s Selecting previously unselected package libicu-dev:arm64. 246s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_arm64.deb ... 246s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 247s Selecting previously unselected package libjpeg-turbo8:arm64. 247s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 247s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 248s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 248s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 248s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 248s Selecting previously unselected package libjpeg8:arm64. 248s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_arm64.deb ... 248s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 248s Selecting previously unselected package libjpeg8-dev:arm64. 248s Preparing to unpack .../073-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 248s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 248s Selecting previously unselected package libjpeg-dev:arm64. 248s Preparing to unpack .../074-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 248s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 248s 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(1.51.0+ds-4) ... 252s Selecting previously unselected package libpaper1:arm64. 252s Preparing to unpack .../101-libpaper1_1.1.29_arm64.deb ... 252s Unpacking libpaper1:arm64 (1.1.29) ... 252s Selecting previously unselected package libpaper-utils. 252s Preparing to unpack .../102-libpaper-utils_1.1.29_arm64.deb ... 252s Unpacking libpaper-utils (1.1.29) ... 252s Selecting previously unselected package libpcre2-16-0:arm64. 252s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 252s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 252s Selecting previously unselected package libpcre2-32-0:arm64. 253s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 253s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 253s Selecting previously unselected package libpcre2-posix3:arm64. 253s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 253s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 253s Selecting previously unselected package libpcre2-dev:arm64. 253s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 253s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 253s Selecting previously unselected package libpkgconf3:arm64. 253s Preparing to unpack .../107-libpkgconf3_1.8.1-2_arm64.deb ... 253s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 253s Selecting previously unselected package zlib1g-dev:arm64. 253s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 253s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 253s Selecting previously unselected package libpng-dev:arm64. 253s Preparing to unpack .../109-libpng-dev_1.6.43-1_arm64.deb ... 253s Unpacking libpng-dev:arm64 (1.6.43-1) ... 253s Selecting previously unselected package libpotrace0:arm64. 253s Preparing to unpack .../110-libpotrace0_1.16-2_arm64.deb ... 253s Unpacking libpotrace0:arm64 (1.16-2) ... 253s Selecting previously unselected package libptexenc1:arm64. 253s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_arm64.deb ... 253s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 254s Selecting previously unselected package libreadline-dev:arm64. 254s Preparing to unpack .../112-libreadline-dev_8.2-3_arm64.deb ... 254s Unpacking libreadline-dev:arm64 (8.2-3) ... 254s Selecting previously unselected package libsharpyuv0:arm64. 254s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_arm64.deb ... 254s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 254s Selecting previously unselected package libsm6:arm64. 254s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_arm64.deb ... 254s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 254s Selecting previously unselected package libsynctex2:arm64. 254s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_arm64.deb ... 254s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 254s Selecting previously unselected package libtcl8.6:arm64. 254s Preparing to unpack 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Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 255s Selecting previously unselected package libxft2:arm64. 255s Preparing to unpack .../122-libxft2_2.3.6-1_arm64.deb ... 255s Unpacking libxft2:arm64 (2.3.6-1) ... 255s Selecting previously unselected package libxss1:arm64. 255s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_arm64.deb ... 255s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 255s Selecting previously unselected package libtk8.6:arm64. 255s Preparing to unpack .../124-libtk8.6_8.6.13-2_arm64.deb ... 255s Unpacking libtk8.6:arm64 (8.6.13-2) ... 255s Selecting previously unselected package libxt6:arm64. 255s Preparing to unpack .../125-libxt6_1%3a1.2.1-1.1_arm64.deb ... 255s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 256s Selecting previously unselected package libxmu6:arm64. 256s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_arm64.deb ... 256s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 256s Selecting previously unselected package libxpm4:arm64. 256s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_arm64.deb ... 256s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 256s Selecting previously unselected package libxaw7:arm64. 256s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_arm64.deb ... 256s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 256s Selecting previously unselected package libxi6:arm64. 256s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_arm64.deb ... 256s Unpacking libxi6:arm64 (2:1.8.1-1) ... 256s Selecting previously unselected package libzzip-0-13:arm64. 256s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 256s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 256s Selecting previously unselected package zip. 256s Preparing to unpack .../131-zip_3.0-13_arm64.deb ... 256s Unpacking zip (3.0-13) ... 256s Selecting previously unselected package unzip. 256s Preparing to unpack .../132-unzip_6.0-28ubuntu3_arm64.deb ... 256s Unpacking unzip (6.0-28ubuntu3) ... 256s Selecting previously unselected package xdg-utils. 256s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 256s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 256s Selecting previously unselected package r-base-core. 256s Preparing to unpack .../134-r-base-core_4.3.2-1build1_arm64.deb ... 257s Unpacking r-base-core (4.3.2-1build1) ... 258s Selecting previously unselected package r-cran-littler. 259s Preparing to unpack .../135-r-cran-littler_0.3.19-1_arm64.deb ... 259s Unpacking r-cran-littler (0.3.19-1) ... 259s Selecting previously unselected package littler. 259s Preparing to unpack .../136-littler_0.3.19-1_all.deb ... 259s Unpacking littler (0.3.19-1) ... 259s Selecting previously unselected package node-bootstrap-sass. 259s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 259s Unpacking node-bootstrap-sass (3.4.3-2) ... 259s Selecting previously unselected package node-html5shiv. 259s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 259s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 259s Selecting previously unselected package node-normalize.css. 259s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 259s Unpacking node-normalize.css (8.0.1-5) ... 259s Selecting previously unselected package pandoc-data. 259s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ... 259s Unpacking pandoc-data (3.1.3-1) ... 259s Selecting previously unselected package pandoc. 259s Preparing to unpack .../141-pandoc_3.1.3+ds-2_arm64.deb ... 259s Unpacking pandoc (3.1.3+ds-2) ... 263s Selecting previously unselected package pkgconf-bin. 264s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_arm64.deb ... 264s Unpacking pkgconf-bin (1.8.1-2) ... 264s Selecting previously unselected package pkgconf:arm64. 264s Preparing to unpack .../143-pkgconf_1.8.1-2_arm64.deb ... 264s Unpacking pkgconf:arm64 (1.8.1-2) ... 264s Selecting previously unselected package pkg-config:arm64. 264s Preparing to unpack .../144-pkg-config_1.8.1-2_arm64.deb ... 264s Unpacking pkg-config:arm64 (1.8.1-2) ... 264s Selecting previously unselected package liblzma-dev:arm64. 264s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 264s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 264s Selecting previously unselected package r-base-dev. 264s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 264s Unpacking r-base-dev (4.3.2-1build1) ... 264s Selecting previously unselected package pkg-r-autopkgtest. 264s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 264s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 264s Selecting previously unselected package r-bioc-biocgenerics. 264s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 264s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 264s Selecting previously unselected package r-cran-base64enc. 264s Preparing to unpack .../149-r-cran-base64enc_0.1-3-3_arm64.deb ... 264s Unpacking r-cran-base64enc (0.1-3-3) ... 264s Selecting previously unselected package r-cran-digest. 264s Preparing to unpack .../150-r-cran-digest_0.6.34-1_arm64.deb ... 264s Unpacking r-cran-digest (0.6.34-1) ... 265s Selecting previously unselected package r-cran-rlang. 265s Preparing to unpack .../151-r-cran-rlang_1.1.3-1_arm64.deb ... 265s Unpacking r-cran-rlang (1.1.3-1) ... 265s Selecting previously unselected package r-cran-ellipsis. 265s Preparing to unpack .../152-r-cran-ellipsis_0.3.2-2_arm64.deb ... 265s Unpacking r-cran-ellipsis (0.3.2-2) ... 265s Selecting previously unselected package r-cran-fastmap. 265s Preparing to unpack .../153-r-cran-fastmap_1.1.1-1_arm64.deb ... 265s Unpacking r-cran-fastmap (1.1.1-1) ... 265s Selecting previously unselected package r-cran-htmltools. 265s Preparing to unpack .../154-r-cran-htmltools_0.5.7-1_arm64.deb ... 265s Unpacking r-cran-htmltools (0.5.7-1) ... 265s Selecting previously unselected package r-cran-evaluate. 265s Preparing to unpack .../155-r-cran-evaluate_0.23-1_all.deb ... 265s Unpacking r-cran-evaluate (0.23-1) ... 265s Selecting previously unselected package r-cran-xfun. 265s Preparing to unpack .../156-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 265s Unpacking r-cran-xfun (0.41+dfsg-1) ... 265s Selecting previously unselected package r-cran-highr. 266s Preparing to unpack .../157-r-cran-highr_0.10+dfsg-1_all.deb ... 266s Unpacking r-cran-highr (0.10+dfsg-1) ... 266s Selecting previously unselected package r-cran-yaml. 266s Preparing to unpack .../158-r-cran-yaml_2.3.8-1_arm64.deb ... 266s Unpacking r-cran-yaml (2.3.8-1) ... 266s Selecting previously unselected package libjs-mathjax. 266s Preparing to unpack .../159-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 266s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 270s Selecting previously unselected package r-cran-knitr. 270s Preparing to unpack .../160-r-cran-knitr_1.45+dfsg-1_all.deb ... 270s Unpacking r-cran-knitr (1.45+dfsg-1) ... 270s Selecting previously unselected package r-cran-cachem. 270s Preparing to unpack .../161-r-cran-cachem_1.0.8-1_arm64.deb ... 270s Unpacking r-cran-cachem (1.0.8-1) ... 270s Selecting previously unselected package r-cran-jquerylib. 270s Preparing to unpack .../162-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 270s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 270s Selecting previously unselected package r-cran-jsonlite. 270s Preparing to unpack .../163-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 270s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 270s Selecting previously unselected package r-cran-cli. 271s Preparing to unpack .../164-r-cran-cli_3.6.2-1_arm64.deb ... 271s Unpacking r-cran-cli (3.6.2-1) ... 271s Selecting previously unselected package r-cran-glue. 271s Preparing to unpack .../165-r-cran-glue_1.7.0-1_arm64.deb ... 271s Unpacking r-cran-glue (1.7.0-1) ... 271s Selecting previously unselected package r-cran-lifecycle. 271s Preparing to unpack .../166-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 271s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 271s Selecting previously unselected package r-cran-memoise. 271s Preparing to unpack .../167-r-cran-memoise_2.0.1-1_all.deb ... 271s Unpacking r-cran-memoise (2.0.1-1) ... 271s Selecting previously unselected package r-cran-mime. 271s Preparing to unpack .../168-r-cran-mime_0.12-1_arm64.deb ... 271s Unpacking r-cran-mime (0.12-1) ... 271s Selecting previously unselected package r-cran-fs. 271s Preparing to unpack .../169-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 271s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 272s Selecting previously unselected package r-cran-r6. 272s Preparing to unpack .../170-r-cran-r6_2.5.1-1_all.deb ... 272s Unpacking r-cran-r6 (2.5.1-1) ... 272s Selecting previously unselected package r-cran-rappdirs. 272s Preparing to unpack .../171-r-cran-rappdirs_0.3.3-1_arm64.deb ... 272s Unpacking r-cran-rappdirs (0.3.3-1) ... 272s Selecting previously unselected package r-cran-sass. 272s Preparing to unpack .../172-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 272s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 272s Selecting previously unselected package r-cran-bslib. 272s Preparing to unpack .../173-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 272s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 273s Selecting previously unselected package r-cran-fontawesome. 273s Preparing to unpack .../174-r-cran-fontawesome_0.5.2-1_all.deb ... 273s Unpacking r-cran-fontawesome (0.5.2-1) ... 273s Selecting previously unselected package r-cran-magrittr. 273s Preparing to unpack .../175-r-cran-magrittr_2.0.3-1_arm64.deb ... 273s Unpacking r-cran-magrittr (2.0.3-1) ... 273s Selecting previously unselected package r-cran-stringi. 273s Preparing to unpack .../176-r-cran-stringi_1.8.3-1_arm64.deb ... 273s Unpacking r-cran-stringi (1.8.3-1) ... 273s Selecting previously unselected package r-cran-vctrs. 273s Preparing to unpack .../177-r-cran-vctrs_0.6.5-1_arm64.deb ... 273s Unpacking r-cran-vctrs (0.6.5-1) ... 273s Selecting previously unselected package r-cran-stringr. 273s Preparing to unpack .../178-r-cran-stringr_1.5.1-1_all.deb ... 273s Unpacking r-cran-stringr (1.5.1-1) ... 274s Selecting previously unselected package r-cran-tinytex. 274s Preparing to unpack .../179-r-cran-tinytex_0.49-1_all.deb ... 274s Unpacking r-cran-tinytex (0.49-1) ... 274s Selecting previously unselected package libjs-modernizr. 274s Preparing to unpack .../180-libjs-modernizr_2.6.2+ds1-5_all.deb ... 274s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 274s Selecting previously unselected package r-cran-pkgkitten. 274s Preparing to unpack .../181-r-cran-pkgkitten_0.2.3-1_all.deb ... 274s Unpacking r-cran-pkgkitten (0.2.3-1) ... 274s Selecting previously unselected package r-cran-rcpp. 274s Preparing to unpack .../182-r-cran-rcpp_1.0.12-1_arm64.deb ... 274s Unpacking r-cran-rcpp (1.0.12-1) ... 275s Selecting previously unselected package r-cran-later. 275s Preparing to unpack .../183-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 275s Unpacking r-cran-later (1.3.2+dfsg-1) ... 275s Selecting previously unselected package r-cran-promises. 275s Preparing to unpack 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Selecting previously unselected package r-cran-commonmark. 276s Preparing to unpack .../190-r-cran-commonmark_1.9.1-1_arm64.deb ... 276s Unpacking r-cran-commonmark (1.9.1-1) ... 276s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 276s Preparing to unpack .../191-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 276s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 276s Selecting previously unselected package r-cran-shiny. 276s Preparing to unpack .../192-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 276s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 277s Selecting previously unselected package r-cran-rmarkdown. 277s Preparing to unpack .../193-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 277s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 277s Selecting previously unselected package r-cran-bookdown. 277s Preparing to unpack .../194-r-cran-bookdown_0.37+dfsg-1_all.deb ... 277s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 277s Selecting previously unselected package r-cran-biocmanager. 277s Preparing to unpack .../195-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 277s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 278s Selecting previously unselected package tex-common. 278s Preparing to unpack .../196-tex-common_6.18_all.deb ... 278s Unpacking tex-common (6.18) ... 278s Selecting previously unselected package t1utils. 278s Preparing to unpack .../197-t1utils_1.41-4build2_arm64.deb ... 278s Unpacking t1utils (1.41-4build2) ... 278s Selecting previously unselected package texlive-binaries. 278s Preparing to unpack .../198-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 278s Unpacking texlive-binaries (2023.20230311.66589-9) ... 279s Selecting previously unselected package texlive-base. 279s Preparing to unpack .../199-texlive-base_2023.20240207-1_all.deb ... 279s Unpacking texlive-base (2023.20240207-1) ... 285s Selecting previously unselected package texlive-latex-base. 285s Preparing to unpack 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/usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 311s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 311s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 311s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 311s Setting up r-cran-commonmark (1.9.1-1) ... 311s Setting up r-cran-r6 (2.5.1-1) ... 311s Setting up r-cran-pkgkitten (0.2.3-1) ... 311s Setting up texlive-base (2023.20240207-1) ... 313s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 314s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 315s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 316s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 318s Setting up r-cran-magrittr (2.0.3-1) ... 318s Setting up r-cran-rappdirs (0.3.3-1) ... 318s Setting up r-cran-littler 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/usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 318s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 318s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 318s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 318s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 318s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 318s Setting up r-cran-fastmap (1.1.1-1) ... 318s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 318s Setting up r-cran-stringi (1.8.3-1) ... 318s Setting up texlive-latex-base (2023.20240207-1) ... 318s Setting up r-cran-later (1.3.2+dfsg-1) ... 318s Setting up r-cran-tinytex (0.49-1) ... 318s Setting up r-cran-knitr (1.45+dfsg-1) ... 318s Setting up g++ (4:13.2.0-7ubuntu1) ... 318s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 318s Setting up r-cran-cachem (1.0.8-1) ... 318s Setting up build-essential (12.10ubuntu1) ... 318s Setting up r-cran-vctrs (0.6.5-1) ... 318s Setting up r-cran-ellipsis (0.3.2-2) ... 318s Setting up r-base-dev (4.3.2-1build1) ... 318s Setting up r-cran-stringr (1.5.1-1) ... 318s Setting up r-bioc-rhtslib (2.4.1+dfsg-3build1) ... 318s Setting up texlive-bibtex-extra (2023.20240207-1) ... 318s Setting up r-cran-memoise (2.0.1-1) ... 318s Setting up r-cran-promises (1.2.1+dfsg-1) ... 318s Setting up r-cran-htmltools (0.5.7-1) ... 318s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 318s Setting up r-cran-sass (0.4.8+dfsg-1) ... 318s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 318s Setting up r-cran-fontawesome (0.5.2-1) ... 318s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 318s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 318s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 318s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 318s Setting up r-cran-bookdown (0.37+dfsg-1) ... 318s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 318s Setting up autopkgtest-satdep (0) ... 318s Processing triggers for man-db (2.12.0-3) ... 321s Processing triggers for install-info (7.1-3) ... 321s Processing triggers for libc-bin (2.39-0ubuntu2) ... 321s Processing triggers for tex-common (6.18) ... 323s Running updmap-sys. This may take some time... done. 323s Running mktexlsr /var/lib/texmf ... done. 323s Building format(s) --all. 440s This may take some time... done. 463s (Reading database ... 102526 files and directories currently installed.) 463s Removing autopkgtest-satdep (0) ... 464s autopkgtest [15:06:36]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 464s autopkgtest [15:06:36]: test pkg-r-autopkgtest: [----------------------- 465s Test: Try to load the R library Rhtslib 465s 465s R version 4.3.2 (2023-10-31) -- "Eye Holes" 465s Copyright (C) 2023 The R Foundation for Statistical Computing 465s Platform: aarch64-unknown-linux-gnu (64-bit) 465s 465s R is free software and comes with ABSOLUTELY NO WARRANTY. 465s You are welcome to redistribute it under certain conditions. 465s Type 'license()' or 'licence()' for distribution details. 465s 465s R is a collaborative project with many contributors. 465s Type 'contributors()' for more information and 465s 'citation()' on how to cite R or R packages in publications. 465s 465s Type 'demo()' for some demos, 'help()' for on-line help, or 465s 'help.start()' for an HTML browser interface to help. 465s Type 'q()' to quit R. 465s 465s > library('Rhtslib') 465s > Rhtslib htslib version 1.15.1 465s Warning message: 465s package ‘Rhtslib’ was built under R version 4.3.3 465s 465s > 465s Other tests are currently unsupported! 465s They will be progressively added. 466s autopkgtest [15:06:38]: test pkg-r-autopkgtest: -----------------------] 466s pkg-r-autopkgtest PASS 466s autopkgtest [15:06:38]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 467s autopkgtest [15:06:39]: @@@@@@@@@@@@@@@@@@@@ summary 467s pkg-r-autopkgtest PASS 479s Creating nova instance adt-noble-arm64-r-bioc-rhtslib-20240316-145852-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...