0s autopkgtest [17:41:23]: starting date and time: 2024-03-16 17:41:23+0000 0s autopkgtest [17:41:23]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:41:23]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qll0mlqx/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-rgsepd --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-9.secgroup --name adt-noble-arm64-r-bioc-rgsepd-20240316-174122-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 115s autopkgtest [17:43:18]: testbed dpkg architecture: arm64 115s autopkgtest [17:43:18]: testbed apt version: 2.7.12 115s autopkgtest [17:43:18]: @@@@@@@@@@@@@@@@@@@@ test bed setup 115s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 116s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 117s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 117s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 117s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 117s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 117s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 117s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 117s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 117s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 117s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 117s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 117s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 118s Fetched 9060 kB in 2s (4680 kB/s) 118s Reading package lists... 121s Reading package lists... 121s Building dependency tree... 121s Reading state information... 122s Calculating upgrade... 122s The following packages will be REMOVED: 122s libglib2.0-0 libssl3 122s The following NEW packages will be installed: 122s libglib2.0-0t64 libssl3t64 xdg-user-dirs 122s The following packages have been kept back: 122s curl 122s The following packages will be upgraded: 122s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 122s ubuntu-minimal ubuntu-standard 122s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 122s Need to get 4613 kB of archives. 122s After this operation, 211 kB of additional disk space will be used. 122s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 123s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 123s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 123s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 123s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 123s Fetched 4613 kB in 1s (6537 kB/s) 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 124s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 124s udisks2 depends on libglib2.0-0 (>= 2.77.0). 124s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 124s python3-gi depends on libglib2.0-0 (>= 2.77.0). 124s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 124s netplan.io depends on libglib2.0-0 (>= 2.70.0). 124s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 124s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 124s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 124s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 124s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 124s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 124s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 124s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 124s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 124s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 124s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 124s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 124s fwupd depends on libglib2.0-0 (>= 2.79.0). 124s bolt depends on libglib2.0-0 (>= 2.56.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 124s Selecting previously unselected package libglib2.0-0t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 124s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 124s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 124s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 124s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 124s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 124s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 124s wget depends on libssl3 (>= 3.0.0). 124s u-boot-tools depends on libssl3 (>= 3.0.0). 124s tnftp depends on libssl3 (>= 3.0.0). 124s tcpdump depends on libssl3 (>= 3.0.0). 124s systemd-resolved depends on libssl3 (>= 3.0.0). 124s systemd depends on libssl3 (>= 3.0.0). 124s sudo depends on libssl3 (>= 3.0.0). 124s sbsigntool depends on libssl3 (>= 3.0.0). 124s rsync depends on libssl3 (>= 3.0.0). 124s python3-cryptography depends on libssl3 (>= 3.0.0). 124s openssh-server depends on libssl3 (>= 3.0.10). 124s openssh-client depends on libssl3 (>= 3.0.10). 124s mtd-utils depends on libssl3 (>= 3.0.0). 124s mokutil depends on libssl3 (>= 3.0.0). 124s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 124s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 124s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 124s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 124s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 124s libnvme1 depends on libssl3 (>= 3.0.0). 124s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 124s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 124s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 124s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 124s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 124s kmod depends on libssl3 (>= 3.0.0). 124s dhcpcd-base depends on libssl3 (>= 3.0.0). 124s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 124s 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 124s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 124s Selecting previously unselected package libssl3t64:arm64. 124s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 124s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 124s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 124s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 124s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 124s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 124s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 124s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 124s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 125s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 125s Unpacking ubuntu-minimal (1.536) over (1.535) ... 125s Selecting previously unselected package xdg-user-dirs. 125s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 125s Unpacking xdg-user-dirs (0.18-1) ... 125s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 125s Unpacking ubuntu-standard (1.536) over (1.535) ... 125s Setting up ubuntu-minimal (1.536) ... 125s Setting up xdg-user-dirs (0.18-1) ... 125s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 125s Setting up libtirpc-common (1.3.4+ds-1.1) ... 125s Setting up ubuntu-standard (1.536) ... 125s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 125s No schema files found: doing nothing. 125s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 125s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 125s Setting up openssl (3.0.13-0ubuntu1) ... 125s Setting up readline-common (8.2-3.1) ... 125s Processing triggers for man-db (2.12.0-3) ... 125s Processing triggers for install-info (7.1-3) ... 125s Processing triggers for libc-bin (2.39-0ubuntu2) ... 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 127s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 127s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 127s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 127s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 129s Reading package lists... 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 129s Calculating upgrade... 130s The following packages have been kept back: 130s curl 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 134s autopkgtest [17:43:37]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 134s autopkgtest [17:43:37]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-rgsepd 136s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (dsc) [2197 B] 136s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (tar) [1253 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-rgsepd 1.34.0-1 (diff) [2280 B] 136s gpgv: Signature made Fri Dec 8 15:10:10 2023 UTC 136s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 136s gpgv: issuer "tille@debian.org" 136s gpgv: Can't check signature: No public key 136s dpkg-source: warning: cannot verify inline signature for ./r-bioc-rgsepd_1.34.0-1.dsc: no acceptable signature found 136s autopkgtest [17:43:39]: testing package r-bioc-rgsepd version 1.34.0-1 138s autopkgtest [17:43:41]: build not needed 140s autopkgtest [17:43:43]: test pkg-r-autopkgtest: preparing testbed 142s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 142s Starting 2 pkgProblemResolver with broken count: 0 142s Done 143s The following additional packages will be installed: 143s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 143s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 143s fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax g++ g++-13 143s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 143s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 143s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 143s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 143s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 143s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 143s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 143s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 143s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 143s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 143s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 143s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 143s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 143s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 143s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 143s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 143s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 143s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 143s linux-libc-dev littler node-html5shiv node-normalize.css pkg-config 143s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 143s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 143s r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings 143s r-bioc-delayedarray r-bioc-deseq2 r-bioc-genelendatabase r-bioc-genomeinfodb 143s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 143s r-bioc-genomicranges r-bioc-go.db r-bioc-goseq r-bioc-iranges 143s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rgsepd 143s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 143s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 143s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh 143s r-cran-biasedurn r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 143s r-cran-boot r-cran-cachem r-cran-catools r-cran-cli r-cran-codetools 143s r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 143s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 143s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-formatr 143s r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics 143s r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gtable r-cran-gtools 143s r-cran-highr r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite 143s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r 143s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 143s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 143s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar 143s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 143s r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 143s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-restfulr r-cran-rjson 143s r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi 143s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 143s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun 143s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 143s x11-common xdg-utils zip zlib1g-dev 143s Suggested packages: 143s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 143s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 143s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 143s liblapack-doc libboost-doc libboost1.83-doc libboost-atomic1.83-dev 143s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 143s libboost-contract1.83-dev libboost-coroutine1.83-dev 143s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 143s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 143s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 143s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 143s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 143s libboost-numpy1.83-dev libboost-program-options1.83-dev 143s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 143s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 143s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 143s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 143s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 143s glibc-doc icu-doc fonts-mathjax-extras fonts-stix libjs-mathjax-doc 143s liblzma-doc ncurses-doc readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs 143s elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base 143s texlive-latex-base texlive-plain-generic texlive-fonts-recommended 143s texlive-fonts-extra texlive-extra-utils texlive-latex-recommended 143s texlive-latex-extra texinfo r-cran-runit r-bioc-graph r-bioc-biocstyle 143s r-bioc-all r-cran-testthat r-cran-rmarkdown r-bioc-affy r-bioc-annotate 143s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation 143s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 143s r-cran-webmockr r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter 143s r-cran-lobstr r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximport 143s r-bioc-tximeta r-bioc-tximportdata r-cran-readr r-cran-pbapply 143s r-bioc-glmgampoi r-cran-biocmanager r-cran-r.utils r-bioc-edger 143s r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown r-bioc-gviz 143s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma 143s r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rpart 143s r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs 143s r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 143s r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam 143s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-survival 143s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 143s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 143s r-cran-htmltools r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo 143s Recommended packages: 143s bzip2-doc manpages manpages-dev libc-devtools javascript-common libpng-tools 143s r-recommended r-doc-html r-cran-testthat r-cran-callr r-cran-covr 143s r-cran-htmltools r-cran-htmlwidgets r-cran-mockery r-cran-processx r-cran-ps 143s r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-whoami 143s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr 143s r-cran-spelling r-cran-later r-cran-httpuv r-cran-webutils 143s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-unitizer r-cran-testit 143s r-cran-survival r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj 143s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 143s r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-jpeg 143s r-cran-readr r-cran-r.rsp r-cran-bslib r-cran-gridsvg r-cran-magick 143s r-cran-markdown r-cran-reticulate r-cran-rgl r-cran-sass r-cran-tikzdevice 143s r-cran-tinytex r-cran-webshot node-highlight.js r-cran-lintr 143s r-cran-tidyverse r-cran-base64enc r-cran-r.devices r-cran-sodium 143s r-cran-lubridate r-cran-runit r-cran-fs r-cran-usethis r-cran-dbitest 143s r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat r-cran-data.table 143s r-cran-mockr r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-remotes 143s r-cran-renv libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 143s x11-utils x11-xserver-utils 143s The following packages will be REMOVED: 143s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 143s The following NEW packages will be installed: 143s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 143s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 143s fonts-dejavu-core fonts-dejavu-mono fonts-glyphicons-halflings fonts-mathjax 143s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 143s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 143s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 143s libasan8 libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev 143s libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 143s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 143s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 143s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 143s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 143s libjs-highlight.js libjs-jquery libjs-jquery-datatables libjs-mathjax 143s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 143s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 143s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 143s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 143s libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 libsharpyuv0 143s libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 143s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 143s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 143s linux-libc-dev littler node-html5shiv node-normalize.css pkg-config 143s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 143s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 143s r-bioc-biocio r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings 143s r-bioc-delayedarray r-bioc-deseq2 r-bioc-genelendatabase r-bioc-genomeinfodb 143s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 143s r-bioc-genomicranges r-bioc-go.db r-bioc-goseq r-bioc-iranges 143s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rgsepd 143s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 143s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 143s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh 143s r-cran-biasedurn r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 143s r-cran-boot r-cran-cachem r-cran-catools r-cran-cli r-cran-codetools 143s r-cran-colorspace r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 143s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-evaluate r-cran-fansi 143s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-formatr 143s r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-generics 143s r-cran-ggplot2 r-cran-glue r-cran-gplots r-cran-gtable r-cran-gtools 143s r-cran-highr r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite 143s r-cran-kernsmooth r-cran-knitr r-cran-labeling r-cran-lambda.r 143s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 143s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv 143s r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pillar 143s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 143s r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer 143s r-cran-rcpp r-cran-rcpparmadillo r-cran-rcurl r-cran-restfulr r-cran-rjson 143s r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi 143s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 143s r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr r-cran-xfun 143s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 143s x11-common xdg-utils zip zlib1g-dev 143s The following packages will be upgraded: 143s curl 143s 1 upgraded, 249 newly installed, 5 to remove and 0 not upgraded. 143s Need to get 462 MB/462 MB of archives. 143s After this operation, 1413 MB of additional disk space will be used. 143s Get:1 /tmp/autopkgtest.CiTHx6/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 143s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 144s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 144s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 144s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 144s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 144s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 144s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 144s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 144s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 144s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 144s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 144s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 144s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 144s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 144s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 144s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 144s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 144s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 144s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 144s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 144s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 144s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 144s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 144s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 144s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 145s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 145s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 145s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 145s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 145s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 145s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 145s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 145s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 145s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 145s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 145s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 145s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 145s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 145s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 145s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 145s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 145s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 145s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 146s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 146s Get:47 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 146s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 146s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 146s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 146s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 146s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 146s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 146s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 146s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 146s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 146s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 146s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 146s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 146s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 146s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 146s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 146s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 146s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 146s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 146s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 146s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 146s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 146s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 146s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 146s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 146s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 147s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 147s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 147s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 147s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 147s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 147s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 147s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 147s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 147s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 147s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 147s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 147s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 147s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 147s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 147s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 147s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 147s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 147s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 147s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 147s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 147s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 147s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 147s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 147s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 147s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 147s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 147s Get:99 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 147s Get:100 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 147s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 147s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 147s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 148s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 148s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 148s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 148s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 148s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 148s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 148s Get:110 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 148s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 148s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 148s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 148s Get:114 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 149s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 149s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 149s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 149s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 149s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 149s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 149s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 149s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 149s Get:123 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 149s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 149s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 149s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 149s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 149s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 149s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 149s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 149s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 149s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 149s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 149s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 149s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 149s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 149s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 149s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 149s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 149s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 149s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 149s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 149s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 149s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 149s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 149s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 149s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 149s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 149s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 149s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 149s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 149s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 149s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 149s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 149s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 150s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 150s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 150s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 150s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 150s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 150s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 151s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 151s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 151s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 151s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 151s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 151s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 151s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 151s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 151s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 151s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 151s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 151s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 151s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 151s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 151s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 151s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 151s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 151s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 151s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 151s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 151s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 151s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 151s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 151s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 151s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 151s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 151s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 151s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 151s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 151s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 151s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 151s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 151s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 151s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 151s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 151s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 151s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 151s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 151s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 151s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 151s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 151s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 152s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 152s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 152s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 152s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 152s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 152s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 152s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 152s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 152s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 152s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 153s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 153s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 153s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 153s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 153s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 153s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 153s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 153s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 153s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 153s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 153s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 153s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 153s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 153s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 153s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 153s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 153s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 153s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 153s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 153s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genelendatabase all 1.38.0-1 [100 MB] 156s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 156s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biasedurn arm64 2.0.11-1 [276 kB] 156s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-goseq all 1.54.0-1 [1744 kB] 156s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 158s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 158s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-catools arm64 1.18.2-1 [200 kB] 158s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-kernsmooth arm64 2.23-22-1 [91.1 kB] 158s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB] 158s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gplots all 3.1.3.1-1 [589 kB] 158s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rgsepd all 1.34.0-1 [1364 kB] 158s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 158s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 158s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 158s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 158s Get:248 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 158s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 158s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 159s Preconfiguring packages ... 160s Fetched 462 MB in 15s (30.9 MB/s) 160s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 160s wget depends on libpsl5 (>= 0.16.0). 160s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 160s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 160s Removing libpsl5:arm64 (0.21.2-1build1) ... 160s Selecting previously unselected package libpsl5t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 160s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 160s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 160s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 160s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 160s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 160s Selecting previously unselected package libcurl4t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 160s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 160s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 160s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 160s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 160s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 160s Removing libpng16-16:arm64 (1.6.43-1) ... 160s Selecting previously unselected package libpng16-16t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 160s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 160s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 160s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 160s parted depends on libreadline8 (>= 6.0). 160s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 160s gpgsm depends on libreadline8 (>= 6.0). 160s gpgconf depends on libreadline8 (>= 6.0). 160s gpg depends on libreadline8 (>= 6.0). 160s gawk depends on libreadline8 (>= 6.0). 160s fdisk depends on libreadline8 (>= 6.0). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 160s Removing libreadline8:arm64 (8.2-3) ... 160s Selecting previously unselected package libreadline8t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 160s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 160s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 160s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 160s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 160s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 160s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 160s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 160s lsof depends on libtirpc3 (>= 1.0.2). 160s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 160s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 160s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 160s iproute2 depends on libtirpc3 (>= 1.0.2). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 160s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 160s Selecting previously unselected package libtirpc3t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 160s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 160s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 160s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 160s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 160s Selecting previously unselected package libc-dev-bin. 161s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 161s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 161s Selecting previously unselected package linux-libc-dev:arm64. 161s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 161s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 161s Selecting previously unselected package libcrypt-dev:arm64. 161s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 161s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 161s Selecting previously unselected package libtirpc-dev:arm64. 161s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 161s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 161s Selecting previously unselected package libnsl-dev:arm64. 161s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 161s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 161s Selecting previously unselected package rpcsvc-proto. 161s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 161s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 161s Selecting previously unselected package libc6-dev:arm64. 161s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 161s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 161s Selecting previously unselected package libisl23:arm64. 161s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 161s Unpacking libisl23:arm64 (0.26-3) ... 161s Selecting previously unselected package libmpc3:arm64. 161s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 161s Unpacking libmpc3:arm64 (1.3.1-1) ... 161s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 161s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package cpp-13. 161s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 161s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 161s Selecting previously unselected package cpp-aarch64-linux-gnu. 161s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package cpp. 161s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 161s Unpacking cpp (4:13.2.0-7ubuntu1) ... 161s Selecting previously unselected package libcc1-0:arm64. 161s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 161s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libgomp1:arm64. 162s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libitm1:arm64. 162s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libatomic1:arm64. 162s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libasan8:arm64. 162s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package liblsan0:arm64. 162s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libtsan2:arm64. 162s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libubsan1:arm64. 162s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libhwasan0:arm64. 162s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 162s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 162s Selecting previously unselected package libgcc-13-dev:arm64. 162s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 162s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 162s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 162s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gcc-13. 163s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 163s Selecting previously unselected package gcc-aarch64-linux-gnu. 163s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package gcc. 163s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 163s Unpacking gcc (4:13.2.0-7ubuntu1) ... 163s Selecting previously unselected package libstdc++-13-dev:arm64. 163s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 163s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package g++-13-aarch64-linux-gnu. 164s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package g++-13. 164s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 164s Unpacking g++-13 (13.2.0-17ubuntu2) ... 164s Selecting previously unselected package g++-aarch64-linux-gnu. 164s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package g++. 164s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 164s Unpacking g++ (4:13.2.0-7ubuntu1) ... 164s Selecting previously unselected package build-essential. 164s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 164s Unpacking build-essential (12.10ubuntu1) ... 164s Selecting previously unselected package dctrl-tools. 164s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 164s Unpacking dctrl-tools (2.24-3build2) ... 164s Selecting previously unselected package fonts-dejavu-mono. 164s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-mono (2.37-8) ... 164s Selecting previously unselected package fonts-dejavu-core. 164s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 164s Unpacking fonts-dejavu-core (2.37-8) ... 164s Selecting previously unselected package fontconfig-config. 164s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 164s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 164s Selecting previously unselected package libfontconfig1:arm64. 164s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 164s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 164s Selecting previously unselected package fontconfig. 165s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 165s Unpacking fontconfig (2.15.0-1ubuntu1) ... 165s Selecting previously unselected package fonts-glyphicons-halflings. 165s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 165s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 165s Selecting previously unselected package fonts-mathjax. 165s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 165s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 165s Selecting previously unselected package libgfortran5:arm64. 165s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 165s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 165s Selecting previously unselected package libgfortran-13-dev:arm64. 165s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 165s Preparing to unpack .../044-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-13. 165s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 165s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 165s Selecting previously unselected package gfortran-aarch64-linux-gnu. 165s Preparing to unpack .../046-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package gfortran. 165s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 165s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 165s Selecting previously unselected package icu-devtools. 165s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ... 165s Unpacking icu-devtools (74.2-1ubuntu1) ... 165s Selecting previously unselected package libblas3:arm64. 165s Preparing to unpack .../049-libblas3_3.12.0-3_arm64.deb ... 165s Unpacking libblas3:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libblas-dev:arm64. 165s Preparing to unpack .../050-libblas-dev_3.12.0-3_arm64.deb ... 165s Unpacking libblas-dev:arm64 (3.12.0-3) ... 165s Selecting previously unselected package libboost1.83-dev:arm64. 165s Preparing to unpack .../051-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 165s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 167s Selecting previously unselected package libboost-dev:arm64. 167s Preparing to unpack .../052-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 167s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 167s Selecting previously unselected package libbz2-dev:arm64. 167s Preparing to unpack .../053-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 167s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 167s Selecting previously unselected package libpixman-1-0:arm64. 167s Preparing to unpack .../054-libpixman-1-0_0.42.2-1_arm64.deb ... 167s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 167s Selecting previously unselected package libxcb-render0:arm64. 167s Preparing to unpack .../055-libxcb-render0_1.15-1_arm64.deb ... 167s Unpacking libxcb-render0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-shm0:arm64. 167s Preparing to unpack .../056-libxcb-shm0_1.15-1_arm64.deb ... 167s Unpacking libxcb-shm0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxrender1:arm64. 167s Preparing to unpack .../057-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 167s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 167s Selecting previously unselected package libcairo2:arm64. 167s Preparing to unpack .../058-libcairo2_1.18.0-1_arm64.deb ... 167s Unpacking libcairo2:arm64 (1.18.0-1) ... 167s Selecting previously unselected package libdatrie1:arm64. 168s Preparing to unpack .../059-libdatrie1_0.2.13-3_arm64.deb ... 168s Unpacking libdatrie1:arm64 (0.2.13-3) ... 168s Selecting previously unselected package libdeflate0:arm64. 168s Preparing to unpack .../060-libdeflate0_1.19-1_arm64.deb ... 168s Unpacking libdeflate0:arm64 (1.19-1) ... 168s Selecting previously unselected package libgraphite2-3:arm64. 168s Preparing to unpack .../061-libgraphite2-3_1.3.14-2_arm64.deb ... 168s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 168s Selecting previously unselected package libharfbuzz0b:arm64. 168s Preparing to unpack .../062-libharfbuzz0b_8.3.0-2_arm64.deb ... 168s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 168s Selecting previously unselected package x11-common. 168s Preparing to unpack .../063-x11-common_1%3a7.7+23ubuntu2_all.deb ... 168s Unpacking x11-common (1:7.7+23ubuntu2) ... 168s Selecting previously unselected package libice6:arm64. 168s Preparing to unpack .../064-libice6_2%3a1.0.10-1build2_arm64.deb ... 168s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 168s Selecting previously unselected package libicu-dev:arm64. 168s Preparing to unpack .../065-libicu-dev_74.2-1ubuntu1_arm64.deb ... 168s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 168s Selecting previously unselected package libjpeg-turbo8:arm64. 168s Preparing to unpack .../066-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 168s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 168s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 168s Preparing to unpack .../067-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 168s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 168s Selecting previously unselected package libjpeg8:arm64. 168s Preparing to unpack .../068-libjpeg8_8c-2ubuntu11_arm64.deb ... 168s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 168s Selecting previously unselected package libjpeg8-dev:arm64. 168s Preparing to unpack .../069-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 168s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 168s Selecting previously unselected package libjpeg-dev:arm64. 169s Preparing to unpack .../070-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 169s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 169s Selecting previously unselected package libjs-bootstrap. 169s Preparing to unpack .../071-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 169s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 169s Selecting previously unselected package libjs-highlight.js. 169s Preparing to unpack .../072-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 169s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 169s Selecting previously unselected package libjs-jquery. 169s Preparing to unpack .../073-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 169s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 169s Selecting previously unselected package libjs-jquery-datatables. 169s Preparing to unpack .../074-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 169s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 169s Selecting previously unselected package liblapack3:arm64. 169s Preparing to unpack .../075-liblapack3_3.12.0-3_arm64.deb ... 169s Unpacking liblapack3:arm64 (3.12.0-3) ... 169s Selecting previously unselected package liblapack-dev:arm64. 169s Preparing to unpack .../076-liblapack-dev_3.12.0-3_arm64.deb ... 169s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 169s Selecting previously unselected package liblerc4:arm64. 169s Preparing to unpack .../077-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 169s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 169s Selecting previously unselected package libncurses-dev:arm64. 169s Preparing to unpack .../078-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 169s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 169s Selecting previously unselected package libthai-data. 169s Preparing to unpack .../079-libthai-data_0.1.29-2_all.deb ... 169s Unpacking libthai-data (0.1.29-2) ... 169s Selecting previously unselected package libthai0:arm64. 169s Preparing to unpack .../080-libthai0_0.1.29-2_arm64.deb ... 169s Unpacking libthai0:arm64 (0.1.29-2) ... 169s Selecting previously unselected package libpango-1.0-0:arm64. 169s Preparing to unpack .../081-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangoft2-1.0-0:arm64. 169s Preparing to unpack .../082-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpangocairo-1.0-0:arm64. 169s Preparing to unpack .../083-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 169s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 169s Selecting previously unselected package libpaper1:arm64. 169s Preparing to unpack .../084-libpaper1_1.1.29_arm64.deb ... 169s Unpacking libpaper1:arm64 (1.1.29) ... 169s Selecting previously unselected package libpaper-utils. 169s Preparing to unpack .../085-libpaper-utils_1.1.29_arm64.deb ... 169s Unpacking libpaper-utils (1.1.29) ... 169s Selecting previously unselected package libpcre2-16-0:arm64. 169s Preparing to unpack .../086-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 169s Selecting previously unselected package libpcre2-32-0:arm64. 169s Preparing to unpack .../087-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 169s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpcre2-posix3:arm64. 170s Preparing to unpack .../088-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpcre2-dev:arm64. 170s Preparing to unpack .../089-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 170s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 170s Selecting previously unselected package libpkgconf3:arm64. 170s Preparing to unpack .../090-libpkgconf3_1.8.1-2_arm64.deb ... 170s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 170s Selecting previously unselected package zlib1g-dev:arm64. 170s Preparing to unpack .../091-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 170s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 170s Selecting previously unselected package libpng-dev:arm64. 170s Preparing to unpack .../092-libpng-dev_1.6.43-3_arm64.deb ... 170s Unpacking libpng-dev:arm64 (1.6.43-3) ... 170s Selecting previously unselected package libreadline-dev:arm64. 170s Preparing to unpack .../093-libreadline-dev_8.2-3.1_arm64.deb ... 170s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 170s Selecting previously unselected package libsharpyuv0:arm64. 170s Preparing to unpack .../094-libsharpyuv0_1.3.2-0.4_arm64.deb ... 170s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 170s Selecting previously unselected package libsm6:arm64. 170s Preparing to unpack .../095-libsm6_2%3a1.2.3-1build2_arm64.deb ... 170s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 170s Selecting previously unselected package libtcl8.6:arm64. 170s Preparing to unpack .../096-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 170s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 170s Selecting previously unselected package libjbig0:arm64. 170s Preparing to unpack .../097-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 170s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 170s Selecting previously unselected package libwebp7:arm64. 170s Preparing to unpack .../098-libwebp7_1.3.2-0.4_arm64.deb ... 170s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 170s Selecting previously unselected package libtiff6:arm64. 170s Preparing to unpack .../099-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 170s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 170s Selecting previously unselected package libxft2:arm64. 170s Preparing to unpack .../100-libxft2_2.3.6-1_arm64.deb ... 170s Unpacking libxft2:arm64 (2.3.6-1) ... 170s Selecting previously unselected package libxss1:arm64. 170s Preparing to unpack .../101-libxss1_1%3a1.2.3-1build2_arm64.deb ... 170s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 170s Selecting previously unselected package libtk8.6:arm64. 171s Preparing to unpack .../102-libtk8.6_8.6.13-2_arm64.deb ... 171s Unpacking libtk8.6:arm64 (8.6.13-2) ... 171s Selecting previously unselected package libxt6t64:arm64. 171s Preparing to unpack .../103-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 171s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 171s Selecting previously unselected package zip. 171s Preparing to unpack .../104-zip_3.0-13_arm64.deb ... 171s Unpacking zip (3.0-13) ... 171s Selecting previously unselected package unzip. 171s Preparing to unpack .../105-unzip_6.0-28ubuntu3_arm64.deb ... 171s Unpacking unzip (6.0-28ubuntu3) ... 171s Selecting previously unselected package xdg-utils. 171s Preparing to unpack .../106-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 171s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 171s Selecting previously unselected package r-base-core. 171s Preparing to unpack .../107-r-base-core_4.3.3-2build1_arm64.deb ... 171s Unpacking r-base-core (4.3.3-2build1) ... 171s Selecting previously unselected package r-cran-littler. 171s Preparing to unpack .../108-r-cran-littler_0.3.19-1_arm64.deb ... 171s Unpacking r-cran-littler (0.3.19-1) ... 171s Selecting previously unselected package littler. 171s Preparing to unpack .../109-littler_0.3.19-1_all.deb ... 171s Unpacking littler (0.3.19-1) ... 171s Selecting previously unselected package node-html5shiv. 171s Preparing to unpack .../110-node-html5shiv_3.7.3+dfsg-5_all.deb ... 171s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 171s Selecting previously unselected package node-normalize.css. 171s Preparing to unpack .../111-node-normalize.css_8.0.1-5_all.deb ... 171s Unpacking node-normalize.css (8.0.1-5) ... 171s Selecting previously unselected package pkgconf-bin. 171s Preparing to unpack .../112-pkgconf-bin_1.8.1-2_arm64.deb ... 171s Unpacking pkgconf-bin (1.8.1-2) ... 172s Selecting previously unselected package pkgconf:arm64. 172s Preparing to unpack .../113-pkgconf_1.8.1-2_arm64.deb ... 172s Unpacking pkgconf:arm64 (1.8.1-2) ... 172s Selecting previously unselected package pkg-config:arm64. 172s Preparing to unpack .../114-pkg-config_1.8.1-2_arm64.deb ... 172s Unpacking pkg-config:arm64 (1.8.1-2) ... 172s Selecting previously unselected package liblzma-dev:arm64. 172s Preparing to unpack .../115-liblzma-dev_5.4.5-0.3_arm64.deb ... 172s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 172s Selecting previously unselected package r-base-dev. 172s Preparing to unpack .../116-r-base-dev_4.3.3-2build1_all.deb ... 172s Unpacking r-base-dev (4.3.3-2build1) ... 172s Selecting previously unselected package pkg-r-autopkgtest. 172s Preparing to unpack .../117-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 172s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 172s Selecting previously unselected package r-bioc-biocgenerics. 172s Preparing to unpack .../118-r-bioc-biocgenerics_0.48.1-2_all.deb ... 172s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 172s Selecting previously unselected package r-bioc-biobase. 172s Preparing to unpack .../119-r-bioc-biobase_2.62.0-1_arm64.deb ... 172s Unpacking r-bioc-biobase (2.62.0-1) ... 172s Selecting previously unselected package r-bioc-s4vectors. 172s Preparing to unpack .../120-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 172s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 172s Selecting previously unselected package r-bioc-iranges. 172s Preparing to unpack .../121-r-bioc-iranges_2.36.0-1_arm64.deb ... 172s Unpacking r-bioc-iranges (2.36.0-1) ... 172s Selecting previously unselected package r-cran-dbi. 172s Preparing to unpack .../122-r-cran-dbi_1.2.2-1_all.deb ... 172s Unpacking r-cran-dbi (1.2.2-1) ... 172s Selecting previously unselected package r-cran-bit. 172s Preparing to unpack .../123-r-cran-bit_4.0.5-1_arm64.deb ... 172s Unpacking r-cran-bit (4.0.5-1) ... 172s Selecting previously unselected package r-cran-bit64. 172s Preparing to unpack .../124-r-cran-bit64_4.0.5-1_arm64.deb ... 172s Unpacking r-cran-bit64 (4.0.5-1) ... 172s Selecting previously unselected package r-cran-rlang. 172s Preparing to unpack .../125-r-cran-rlang_1.1.3-1_arm64.deb ... 172s Unpacking r-cran-rlang (1.1.3-1) ... 172s Selecting previously unselected package r-cran-cli. 172s Preparing to unpack .../126-r-cran-cli_3.6.2-1_arm64.deb ... 172s Unpacking r-cran-cli (3.6.2-1) ... 172s Selecting previously unselected package r-cran-glue. 173s Preparing to unpack .../127-r-cran-glue_1.7.0-1_arm64.deb ... 173s Unpacking r-cran-glue (1.7.0-1) ... 173s Selecting previously unselected package r-cran-lifecycle. 173s Preparing to unpack .../128-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 173s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 173s Selecting previously unselected package r-cran-vctrs. 173s Preparing to unpack .../129-r-cran-vctrs_0.6.5-1_arm64.deb ... 173s Unpacking r-cran-vctrs (0.6.5-1) ... 173s Selecting previously unselected package r-cran-blob. 173s Preparing to unpack .../130-r-cran-blob_1.2.4-1_all.deb ... 173s Unpacking r-cran-blob (1.2.4-1) ... 173s Selecting previously unselected package r-cran-fastmap. 173s Preparing to unpack .../131-r-cran-fastmap_1.1.1-1_arm64.deb ... 173s Unpacking r-cran-fastmap (1.1.1-1) ... 173s Selecting previously unselected package r-cran-cachem. 173s Preparing to unpack .../132-r-cran-cachem_1.0.8-1_arm64.deb ... 173s Unpacking r-cran-cachem (1.0.8-1) ... 173s Selecting previously unselected package r-cran-memoise. 173s Preparing to unpack .../133-r-cran-memoise_2.0.1-1_all.deb ... 173s Unpacking r-cran-memoise (2.0.1-1) ... 173s Selecting previously unselected package r-cran-pkgconfig. 173s Preparing to unpack .../134-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 173s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 173s Selecting previously unselected package r-cran-plogr. 173s Preparing to unpack .../135-r-cran-plogr_0.2.0-3build1_all.deb ... 173s Unpacking r-cran-plogr (0.2.0-3build1) ... 173s Selecting previously unselected package r-cran-cpp11. 173s Preparing to unpack .../136-r-cran-cpp11_0.4.7-1_all.deb ... 173s Unpacking r-cran-cpp11 (0.4.7-1) ... 173s Selecting previously unselected package r-cran-rsqlite. 173s Preparing to unpack .../137-r-cran-rsqlite_2.3.4-1_arm64.deb ... 173s Unpacking r-cran-rsqlite (2.3.4-1) ... 173s Selecting previously unselected package r-cran-curl. 173s Preparing to unpack .../138-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 173s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-jsonlite. 173s Preparing to unpack .../139-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 173s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 173s Selecting previously unselected package r-cran-mime. 173s Preparing to unpack .../140-r-cran-mime_0.12-1_arm64.deb ... 173s Unpacking r-cran-mime (0.12-1) ... 174s Selecting previously unselected package r-cran-sys. 174s Preparing to unpack .../141-r-cran-sys_3.4.2-1_arm64.deb ... 174s Unpacking r-cran-sys (3.4.2-1) ... 174s Selecting previously unselected package r-cran-askpass. 174s Preparing to unpack .../142-r-cran-askpass_1.2.0-1_arm64.deb ... 174s Unpacking r-cran-askpass (1.2.0-1) ... 174s Selecting previously unselected package r-cran-openssl. 174s Preparing to unpack .../143-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 174s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 174s Selecting previously unselected package r-cran-r6. 174s Preparing to unpack .../144-r-cran-r6_2.5.1-1_all.deb ... 174s Unpacking r-cran-r6 (2.5.1-1) ... 174s Selecting previously unselected package r-cran-httr. 174s Preparing to unpack .../145-r-cran-httr_1.4.7+dfsg-1_all.deb ... 174s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 174s Selecting previously unselected package r-cran-png. 174s Preparing to unpack .../146-r-cran-png_0.1-8-1_arm64.deb ... 174s Unpacking r-cran-png (0.1-8-1) ... 174s Selecting previously unselected package r-bioc-zlibbioc. 174s Preparing to unpack .../147-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 174s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 174s Selecting previously unselected package r-bioc-xvector. 174s Preparing to unpack .../148-r-bioc-xvector_0.42.0-1_arm64.deb ... 174s Unpacking r-bioc-xvector (0.42.0-1) ... 174s Selecting previously unselected package r-cran-bitops. 174s Preparing to unpack .../149-r-cran-bitops_1.0-7-1_arm64.deb ... 174s Unpacking r-cran-bitops (1.0-7-1) ... 174s Selecting previously unselected package r-cran-rcurl. 174s Preparing to unpack .../150-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 174s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 174s Selecting previously unselected package r-bioc-genomeinfodbdata. 174s Preparing to unpack .../151-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 174s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 174s Selecting previously unselected package r-bioc-genomeinfodb. 175s Preparing to unpack .../152-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 175s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 175s Selecting previously unselected package r-cran-crayon. 175s Preparing to unpack .../153-r-cran-crayon_1.5.2-1_all.deb ... 175s Unpacking r-cran-crayon (1.5.2-1) ... 175s Selecting previously unselected package r-bioc-biostrings. 175s Preparing to unpack .../154-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 175s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 175s Selecting previously unselected package r-bioc-keggrest. 175s Preparing to unpack .../155-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 175s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 175s Selecting previously unselected package r-bioc-annotationdbi. 175s Preparing to unpack .../156-r-bioc-annotationdbi_1.64.1-1_all.deb ... 175s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 175s Selecting previously unselected package r-cran-generics. 175s Preparing to unpack .../157-r-cran-generics_0.1.3-1_all.deb ... 175s Unpacking r-cran-generics (0.1.3-1) ... 175s Selecting previously unselected package r-cran-magrittr. 175s Preparing to unpack .../158-r-cran-magrittr_2.0.3-1_arm64.deb ... 175s Unpacking r-cran-magrittr (2.0.3-1) ... 175s Selecting previously unselected package r-cran-fansi. 175s Preparing to unpack .../159-r-cran-fansi_1.0.5-1_arm64.deb ... 175s Unpacking r-cran-fansi (1.0.5-1) ... 175s Selecting previously unselected package r-cran-utf8. 175s Preparing to unpack .../160-r-cran-utf8_1.2.4-1_arm64.deb ... 175s Unpacking r-cran-utf8 (1.2.4-1) ... 175s Selecting previously unselected package r-cran-pillar. 175s Preparing to unpack .../161-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 175s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-tibble. 175s Preparing to unpack .../162-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 175s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 175s Selecting previously unselected package r-cran-withr. 175s Preparing to unpack .../163-r-cran-withr_2.5.0-1_all.deb ... 175s Unpacking r-cran-withr (2.5.0-1) ... 175s Selecting previously unselected package r-cran-tidyselect. 175s Preparing to unpack .../164-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 175s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 175s Selecting previously unselected package r-cran-dplyr. 175s Preparing to unpack .../165-r-cran-dplyr_1.1.4-1_arm64.deb ... 175s Unpacking r-cran-dplyr (1.1.4-1) ... 175s Selecting previously unselected package r-cran-purrr. 175s Preparing to unpack .../166-r-cran-purrr_1.0.2-1_arm64.deb ... 175s Unpacking r-cran-purrr (1.0.2-1) ... 175s Selecting previously unselected package r-cran-stringi. 175s Preparing to unpack .../167-r-cran-stringi_1.8.3-1_arm64.deb ... 175s Unpacking r-cran-stringi (1.8.3-1) ... 175s Selecting previously unselected package r-cran-stringr. 176s Preparing to unpack .../168-r-cran-stringr_1.5.1-1_all.deb ... 176s Unpacking r-cran-stringr (1.5.1-1) ... 176s Selecting previously unselected package r-cran-tidyr. 176s Preparing to unpack .../169-r-cran-tidyr_1.3.1-1_arm64.deb ... 176s Unpacking r-cran-tidyr (1.3.1-1) ... 176s Selecting previously unselected package r-cran-dbplyr. 176s Preparing to unpack .../170-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 176s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-filelock. 176s Preparing to unpack .../171-r-cran-filelock_1.0.3-1_arm64.deb ... 176s Unpacking r-cran-filelock (1.0.3-1) ... 176s Selecting previously unselected package r-bioc-biocfilecache. 176s Preparing to unpack .../172-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 176s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 176s Selecting previously unselected package r-bioc-biocio. 176s Preparing to unpack .../173-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 176s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 176s Selecting previously unselected package r-cran-formatr. 176s Preparing to unpack .../174-r-cran-formatr_1.14-1_all.deb ... 176s Unpacking r-cran-formatr (1.14-1) ... 176s Selecting previously unselected package r-cran-lambda.r. 176s Preparing to unpack .../175-r-cran-lambda.r_1.2.4-2build1_all.deb ... 176s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 176s Selecting previously unselected package r-cran-futile.options. 176s Preparing to unpack .../176-r-cran-futile.options_1.0.1-3build1_all.deb ... 176s Unpacking r-cran-futile.options (1.0.1-3build1) ... 176s Selecting previously unselected package r-cran-futile.logger. 176s Preparing to unpack .../177-r-cran-futile.logger_1.4.3-4build1_all.deb ... 176s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 176s Selecting previously unselected package r-cran-snow. 176s Preparing to unpack .../178-r-cran-snow_1%3a0.4.4-2_all.deb ... 176s Unpacking r-cran-snow (1:0.4.4-2) ... 176s Selecting previously unselected package r-cran-codetools. 176s Preparing to unpack .../179-r-cran-codetools_0.2-19-1_all.deb ... 176s Unpacking r-cran-codetools (0.2-19-1) ... 176s Selecting previously unselected package r-cran-bh. 176s Preparing to unpack .../180-r-cran-bh_1.84.0-1_all.deb ... 176s Unpacking r-cran-bh (1.84.0-1) ... 176s Selecting previously unselected package r-bioc-biocparallel. 176s Preparing to unpack .../181-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 176s Unpacking r-bioc-biocparallel (1.36.0-1) ... 176s Selecting previously unselected package r-cran-xml. 176s Preparing to unpack .../182-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 176s Unpacking r-cran-xml (3.99-0.16.1-1) ... 176s Selecting previously unselected package r-cran-hms. 176s Preparing to unpack .../183-r-cran-hms_1.1.3-1_all.deb ... 176s Unpacking r-cran-hms (1.1.3-1) ... 176s Selecting previously unselected package r-cran-prettyunits. 176s Preparing to unpack .../184-r-cran-prettyunits_1.2.0-1_all.deb ... 176s Unpacking r-cran-prettyunits (1.2.0-1) ... 176s Selecting previously unselected package r-cran-progress. 176s Preparing to unpack .../185-r-cran-progress_1.2.3-1_all.deb ... 176s Unpacking r-cran-progress (1.2.3-1) ... 176s Selecting previously unselected package r-cran-digest. 176s Preparing to unpack .../186-r-cran-digest_0.6.34-1_arm64.deb ... 176s Unpacking r-cran-digest (0.6.34-1) ... 176s Selecting previously unselected package r-cran-rappdirs. 177s Preparing to unpack .../187-r-cran-rappdirs_0.3.3-1_arm64.deb ... 177s Unpacking r-cran-rappdirs (0.3.3-1) ... 177s Selecting previously unselected package r-cran-xml2. 177s Preparing to unpack .../188-r-cran-xml2_1.3.6-1_arm64.deb ... 177s Unpacking r-cran-xml2 (1.3.6-1) ... 177s Selecting previously unselected package r-bioc-biomart. 177s Preparing to unpack .../189-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 177s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 177s Selecting previously unselected package r-cran-lattice. 177s Preparing to unpack .../190-r-cran-lattice_0.22-5-1_arm64.deb ... 177s Unpacking r-cran-lattice (0.22-5-1) ... 177s Selecting previously unselected package r-cran-matrix. 177s Preparing to unpack .../191-r-cran-matrix_1.6-5-1_arm64.deb ... 177s Unpacking r-cran-matrix (1.6-5-1) ... 177s Selecting previously unselected package r-cran-matrixstats. 177s Preparing to unpack .../192-r-cran-matrixstats_1.2.0-1_arm64.deb ... 177s Unpacking r-cran-matrixstats (1.2.0-1) ... 177s Selecting previously unselected package r-bioc-matrixgenerics. 177s Preparing to unpack .../193-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 177s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 177s Selecting previously unselected package r-cran-abind. 177s Preparing to unpack .../194-r-cran-abind_1.4-5-2_all.deb ... 177s Unpacking r-cran-abind (1.4-5-2) ... 177s Selecting previously unselected package r-bioc-s4arrays. 177s Preparing to unpack .../195-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-sparsearray. 177s Preparing to unpack .../196-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 177s Selecting previously unselected package r-bioc-delayedarray. 177s Preparing to unpack .../197-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 177s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-genomicranges. 178s Preparing to unpack .../198-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 178s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 178s Selecting previously unselected package r-bioc-summarizedexperiment. 178s Preparing to unpack .../199-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 178s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 178s Selecting previously unselected package r-cran-locfit. 178s Preparing to unpack .../200-r-cran-locfit_1.5-9.8-1_arm64.deb ... 178s Unpacking r-cran-locfit (1.5-9.8-1) ... 178s Selecting previously unselected package r-cran-gtable. 178s Preparing to unpack .../201-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 178s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 178s Selecting previously unselected package r-cran-isoband. 178s Preparing to unpack .../202-r-cran-isoband_0.2.7-1_arm64.deb ... 178s Unpacking r-cran-isoband (0.2.7-1) ... 178s Selecting previously unselected package r-cran-mass. 178s Preparing to unpack .../203-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 178s Unpacking r-cran-mass (7.3-60.0.1-1) ... 178s Selecting previously unselected package r-cran-nlme. 178s Preparing to unpack .../204-r-cran-nlme_3.1.164-1_arm64.deb ... 178s Unpacking r-cran-nlme (3.1.164-1) ... 178s Selecting previously unselected package r-cran-mgcv. 178s Preparing to unpack .../205-r-cran-mgcv_1.9-1-1_arm64.deb ... 178s Unpacking r-cran-mgcv (1.9-1-1) ... 178s Selecting previously unselected package r-cran-farver. 178s Preparing to unpack .../206-r-cran-farver_2.1.1-1_arm64.deb ... 178s Unpacking r-cran-farver (2.1.1-1) ... 178s Selecting previously unselected package r-cran-labeling. 178s Preparing to unpack .../207-r-cran-labeling_0.4.3-1_all.deb ... 178s Unpacking r-cran-labeling (0.4.3-1) ... 178s Selecting previously unselected package r-cran-colorspace. 178s Preparing to unpack .../208-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 178s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 178s Selecting previously unselected package r-cran-munsell. 178s Preparing to unpack .../209-r-cran-munsell_0.5.0-2build1_all.deb ... 178s Unpacking r-cran-munsell (0.5.0-2build1) ... 178s Selecting previously unselected package r-cran-rcolorbrewer. 178s Preparing to unpack .../210-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 178s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 179s Selecting previously unselected package r-cran-viridislite. 179s Preparing to unpack .../211-r-cran-viridislite_0.4.2-2_all.deb ... 179s Unpacking r-cran-viridislite (0.4.2-2) ... 179s Selecting previously unselected package r-cran-scales. 179s Preparing to unpack .../212-r-cran-scales_1.3.0-1_all.deb ... 179s Unpacking r-cran-scales (1.3.0-1) ... 179s Selecting previously unselected package r-cran-ggplot2. 179s Preparing to unpack .../213-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 179s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 179s Selecting previously unselected package r-cran-pkgkitten. 179s Preparing to unpack .../214-r-cran-pkgkitten_0.2.3-1_all.deb ... 179s Unpacking r-cran-pkgkitten (0.2.3-1) ... 179s Selecting previously unselected package r-cran-rcpp. 179s Preparing to unpack .../215-r-cran-rcpp_1.0.12-1_arm64.deb ... 179s Unpacking r-cran-rcpp (1.0.12-1) ... 179s Selecting previously unselected package r-cran-rcpparmadillo. 179s Preparing to unpack .../216-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 179s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 179s Selecting previously unselected package r-bioc-deseq2. 179s Preparing to unpack .../217-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 179s Selecting previously unselected package r-bioc-rhtslib. 179s Preparing to unpack .../218-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 179s Selecting previously unselected package r-bioc-rsamtools. 179s Preparing to unpack .../219-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 179s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 179s Selecting previously unselected package r-bioc-genomicalignments. 179s Preparing to unpack .../220-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 179s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 179s Selecting previously unselected package r-cran-rjson. 179s Preparing to unpack .../221-r-cran-rjson_0.2.21-1_arm64.deb ... 179s Unpacking r-cran-rjson (0.2.21-1) ... 179s Selecting previously unselected package r-cran-yaml. 179s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_arm64.deb ... 179s Unpacking r-cran-yaml (2.3.8-1) ... 179s Selecting previously unselected package r-cran-restfulr. 179s Preparing to unpack .../223-r-cran-restfulr_0.0.15-1_arm64.deb ... 179s Unpacking r-cran-restfulr (0.0.15-1) ... 179s Selecting previously unselected package r-bioc-rtracklayer. 179s Preparing to unpack .../224-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 179s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 180s Selecting previously unselected package r-bioc-genomicfeatures. 180s Preparing to unpack .../225-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 180s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 180s Selecting previously unselected package r-bioc-genelendatabase. 180s Preparing to unpack .../226-r-bioc-genelendatabase_1.38.0-1_all.deb ... 180s Unpacking r-bioc-genelendatabase (1.38.0-1) ... 180s Selecting previously unselected package r-bioc-go.db. 180s Preparing to unpack .../227-r-bioc-go.db_3.18.0-1_all.deb ... 180s Unpacking r-bioc-go.db (3.18.0-1) ... 181s Selecting previously unselected package r-cran-biasedurn. 181s Preparing to unpack .../228-r-cran-biasedurn_2.0.11-1_arm64.deb ... 181s Unpacking r-cran-biasedurn (2.0.11-1) ... 181s Selecting previously unselected package r-bioc-goseq. 181s Preparing to unpack .../229-r-bioc-goseq_1.54.0-1_all.deb ... 181s Unpacking r-bioc-goseq (1.54.0-1) ... 181s Selecting previously unselected package r-bioc-org.hs.eg.db. 181s Preparing to unpack .../230-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 181s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 182s Selecting previously unselected package r-cran-gtools. 182s Preparing to unpack .../231-r-cran-gtools_3.9.5-1_arm64.deb ... 182s Unpacking r-cran-gtools (3.9.5-1) ... 182s Selecting previously unselected package r-cran-catools. 182s Preparing to unpack .../232-r-cran-catools_1.18.2-1_arm64.deb ... 182s Unpacking r-cran-catools (1.18.2-1) ... 182s Selecting previously unselected package r-cran-kernsmooth. 183s Preparing to unpack .../233-r-cran-kernsmooth_2.23-22-1_arm64.deb ... 183s Unpacking r-cran-kernsmooth (2.23-22-1) ... 183s Selecting previously unselected package r-cran-gdata. 183s Preparing to unpack .../234-r-cran-gdata_3.0.0-1_all.deb ... 183s Unpacking r-cran-gdata (3.0.0-1) ... 183s Selecting previously unselected package r-cran-gplots. 183s Preparing to unpack .../235-r-cran-gplots_3.1.3.1-1_all.deb ... 183s Unpacking r-cran-gplots (3.1.3.1-1) ... 183s Selecting previously unselected package r-bioc-rgsepd. 183s Preparing to unpack .../236-r-bioc-rgsepd_1.34.0-1_all.deb ... 183s Unpacking r-bioc-rgsepd (1.34.0-1) ... 183s Selecting previously unselected package r-cran-boot. 183s Preparing to unpack .../237-r-cran-boot_1.3-30-1_all.deb ... 183s Unpacking r-cran-boot (1.3-30-1) ... 183s Selecting previously unselected package r-cran-evaluate. 183s Preparing to unpack .../238-r-cran-evaluate_0.23-1_all.deb ... 183s Unpacking r-cran-evaluate (0.23-1) ... 183s Selecting previously unselected package r-cran-xfun. 183s Preparing to unpack .../239-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 183s Unpacking r-cran-xfun (0.41+dfsg-1) ... 183s Selecting previously unselected package r-cran-highr. 183s Preparing to unpack .../240-r-cran-highr_0.10+dfsg-1_all.deb ... 183s Unpacking r-cran-highr (0.10+dfsg-1) ... 183s Selecting previously unselected package libjs-mathjax. 183s Preparing to unpack .../241-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 183s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 183s Selecting previously unselected package r-cran-knitr. 183s Preparing to unpack .../242-r-cran-knitr_1.45+dfsg-1_all.deb ... 183s Unpacking r-cran-knitr (1.45+dfsg-1) ... 183s Selecting previously unselected package r-cran-xtable. 184s Preparing to unpack .../243-r-cran-xtable_1%3a1.8-4-2_all.deb ... 184s Unpacking r-cran-xtable (1:1.8-4-2) ... 184s Selecting previously unselected package autopkgtest-satdep. 184s Preparing to unpack .../244-1-autopkgtest-satdep.deb ... 184s Unpacking autopkgtest-satdep (0) ... 184s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 184s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 184s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 184s Setting up libpaper1:arm64 (1.1.29) ... 184s 184s Creating config file /etc/papersize with new version 184s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 184s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 184s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 184s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 184s Setting up libdatrie1:arm64 (0.2.13-3) ... 184s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 184s Setting up libxcb-render0:arm64 (1.15-1) ... 184s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 184s Setting up unzip (6.0-28ubuntu3) ... 184s Setting up x11-common (1:7.7+23ubuntu2) ... 185s Setting up node-html5shiv (3.7.3+dfsg-5) ... 185s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 185s Setting up libdeflate0:arm64 (1.19-1) ... 185s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 185s Setting up libxcb-shm0:arm64 (1.15-1) ... 185s Setting up libpaper-utils (1.1.29) ... 185s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 185s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 185s Setting up zip (3.0-13) ... 185s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 185s Setting up libblas3:arm64 (3.12.0-3) ... 185s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 185s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 185s Setting up libpkgconf3:arm64 (1.8.1-2) ... 185s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 185s Setting up fonts-dejavu-mono (2.37-8) ... 185s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 185s Setting up libmpc3:arm64 (1.3.1-1) ... 185s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 185s Setting up icu-devtools (74.2-1ubuntu1) ... 185s Setting up fonts-dejavu-core (2.37-8) ... 185s Setting up pkgconf-bin (1.8.1-2) ... 185s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 185s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libwebp7:arm64 (1.3.2-0.4) ... 185s Setting up libreadline8t64:arm64 (8.2-3.1) ... 185s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 185s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 185s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 185s Setting up libnsl-dev:arm64 (1.3.0-3) ... 185s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 185s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 185s Setting up libthai-data (0.1.29-2) ... 185s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 185s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 185s Setting up libisl23:arm64 (0.26-3) ... 185s Setting up libc-dev-bin (2.39-0ubuntu2) ... 185s Setting up node-normalize.css (8.0.1-5) ... 185s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 185s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 185s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 185s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libblas-dev:arm64 (3.12.0-3) ... 185s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 185s Setting up dctrl-tools (2.24-3build2) ... 185s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 185s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 185s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 185s Setting up libice6:arm64 (2:1.0.10-1build2) ... 185s Setting up liblapack3:arm64 (3.12.0-3) ... 185s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 185s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 185s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 185s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 185s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 185s Setting up pkgconf:arm64 (1.8.1-2) ... 185s Setting up libthai0:arm64 (0.1.29-2) ... 185s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 185s Setting up liblapack-dev:arm64 (3.12.0-3) ... 185s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 185s Setting up pkg-config:arm64 (1.8.1-2) ... 185s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 185s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 185s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 186s Setting up curl (8.5.0-2ubuntu7) ... 186s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 186s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 186s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 186s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 186s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 186s Setting up fontconfig (2.15.0-1ubuntu1) ... 188s Regenerating fonts cache... done. 188s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 188s Setting up libxft2:arm64 (2.3.6-1) ... 188s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 188s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 188s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 188s Setting up cpp-13 (13.2.0-17ubuntu2) ... 188s Setting up libtk8.6:arm64 (8.6.13-2) ... 188s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 188s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 188s Setting up libreadline-dev:arm64 (8.2-3.1) ... 188s Setting up libcairo2:arm64 (1.18.0-1) ... 188s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 188s Setting up gcc-13 (13.2.0-17ubuntu2) ... 188s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 188s Setting up cpp (4:13.2.0-7ubuntu1) ... 188s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 188s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 188s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 188s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 188s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 188s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 188s Setting up g++-13 (13.2.0-17ubuntu2) ... 188s Setting up libpng-dev:arm64 (1.6.43-3) ... 188s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 188s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 188s Setting up gcc (4:13.2.0-7ubuntu1) ... 188s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 188s Setting up r-base-core (4.3.3-2build1) ... 188s 188s Creating config file /etc/R/Renviron with new version 189s Setting up r-cran-crayon (1.5.2-1) ... 189s Setting up r-cran-labeling (0.4.3-1) ... 189s Setting up r-cran-biasedurn (2.0.11-1) ... 189s Setting up r-cran-futile.options (1.0.1-3build1) ... 189s Setting up r-cran-lattice (0.22-5-1) ... 189s Setting up r-cran-nlme (3.1.164-1) ... 189s Setting up r-cran-farver (2.1.1-1) ... 189s Setting up r-cran-formatr (1.14-1) ... 189s Setting up r-cran-xml (3.99-0.16.1-1) ... 189s Setting up r-cran-viridislite (0.4.2-2) ... 189s Setting up r-cran-locfit (1.5-9.8-1) ... 189s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 189s Setting up r-cran-r6 (2.5.1-1) ... 189s Setting up r-cran-pkgkitten (0.2.3-1) ... 189s Setting up r-cran-magrittr (2.0.3-1) ... 189s Setting up r-cran-rappdirs (0.3.3-1) ... 189s Setting up r-cran-filelock (1.0.3-1) ... 189s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 189s Setting up r-cran-littler (0.3.19-1) ... 189s Setting up r-cran-bh (1.84.0-1) ... 189s Setting up r-cran-rcpp (1.0.12-1) ... 189s Setting up r-cran-curl (5.2.0+dfsg-1) ... 189s Setting up r-cran-codetools (0.2-19-1) ... 189s Setting up r-cran-boot (1.3-30-1) ... 189s Setting up r-bioc-biocgenerics (0.48.1-2) ... 189s Setting up r-cran-rlang (1.1.3-1) ... 189s Setting up r-cran-matrixstats (1.2.0-1) ... 189s Setting up littler (0.3.19-1) ... 189s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 189s Setting up r-cran-xfun (0.41+dfsg-1) ... 189s Setting up r-cran-sys (3.4.2-1) ... 189s Setting up r-cran-plogr (0.2.0-3build1) ... 189s Setting up r-cran-withr (2.5.0-1) ... 189s Setting up r-cran-mime (0.12-1) ... 189s Setting up r-cran-generics (0.1.3-1) ... 189s Setting up r-cran-abind (1.4-5-2) ... 189s Setting up r-cran-digest (0.6.34-1) ... 189s Setting up r-cran-yaml (2.3.8-1) ... 189s Setting up r-cran-lambda.r (1.2.4-2build1) ... 189s Setting up r-cran-evaluate (0.23-1) ... 189s Setting up r-cran-dbi (1.2.2-1) ... 189s Setting up r-cran-highr (0.10+dfsg-1) ... 189s Setting up r-cran-prettyunits (1.2.0-1) ... 189s Setting up r-cran-fansi (1.0.5-1) ... 189s Setting up r-cran-mass (7.3-60.0.1-1) ... 189s Setting up r-cran-snow (1:0.4.4-2) ... 189s Setting up r-cran-gtools (3.9.5-1) ... 189s Setting up r-cran-glue (1.7.0-1) ... 189s Setting up r-cran-bit (4.0.5-1) ... 189s Setting up r-cran-xtable (1:1.8-4-2) ... 189s Setting up r-cran-cli (3.6.2-1) ... 189s Setting up gfortran (4:13.2.0-7ubuntu1) ... 189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 189s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 189s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 189s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 189s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 189s Setting up r-cran-bitops (1.0-7-1) ... 189s Setting up r-cran-bit64 (4.0.5-1) ... 189s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 189s Setting up r-cran-askpass (1.2.0-1) ... 189s Setting up r-cran-fastmap (1.1.1-1) ... 189s Setting up r-cran-png (0.1-8-1) ... 189s Setting up r-bioc-biobase (2.62.0-1) ... 189s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 189s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 189s Setting up r-cran-utf8 (1.2.4-1) ... 189s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 189s Setting up r-cran-stringi (1.8.3-1) ... 189s Setting up r-cran-cpp11 (0.4.7-1) ... 189s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 189s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 189s Setting up r-cran-isoband (0.2.7-1) ... 189s Setting up r-cran-futile.logger (1.4.3-4build1) ... 189s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 189s Setting up r-cran-matrix (1.6-5-1) ... 189s Setting up r-cran-kernsmooth (2.23-22-1) ... 189s Setting up r-cran-knitr (1.45+dfsg-1) ... 189s Setting up r-cran-mgcv (1.9-1-1) ... 189s Setting up g++ (4:13.2.0-7ubuntu1) ... 189s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 189s Setting up r-cran-cachem (1.0.8-1) ... 189s Setting up build-essential (12.10ubuntu1) ... 189s Setting up r-cran-catools (1.18.2-1) ... 189s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 189s Setting up r-bioc-iranges (2.36.0-1) ... 189s Setting up r-cran-rjson (0.2.21-1) ... 189s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 189s Setting up r-cran-restfulr (0.0.15-1) ... 189s Setting up r-cran-gdata (3.0.0-1) ... 189s Setting up r-cran-vctrs (0.6.5-1) ... 189s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 189s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 189s Setting up r-base-dev (4.3.3-2build1) ... 189s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 189s Setting up r-cran-stringr (1.5.1-1) ... 189s Setting up r-bioc-biocparallel (1.36.0-1) ... 189s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 189s Setting up r-cran-xml2 (1.3.6-1) ... 189s Setting up r-cran-munsell (0.5.0-2build1) ... 189s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 189s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 189s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 189s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 189s Setting up r-cran-httr (1.4.7+dfsg-1) ... 189s Setting up r-cran-hms (1.1.3-1) ... 189s Setting up r-cran-scales (1.3.0-1) ... 189s Setting up r-cran-memoise (2.0.1-1) ... 189s Setting up r-cran-purrr (1.0.2-1) ... 189s Setting up r-cran-blob (1.2.4-1) ... 189s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 189s Setting up r-bioc-xvector (0.42.0-1) ... 189s Setting up r-cran-dplyr (1.1.4-1) ... 189s Setting up r-cran-gplots (3.1.3.1-1) ... 189s Setting up r-cran-rsqlite (2.3.4-1) ... 189s Setting up r-cran-progress (1.2.3-1) ... 189s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 189s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 189s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 189s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 189s Setting up r-cran-tidyr (1.3.1-1) ... 189s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 189s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 189s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 189s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 189s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 189s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 189s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 189s Setting up r-bioc-annotationdbi (1.64.1-1) ... 189s Setting up r-bioc-go.db (3.18.0-1) ... 189s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 189s Setting up r-bioc-genomicalignments (1.38.2-1) ... 189s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 189s Setting up r-bioc-rtracklayer (1.62.0-1) ... 189s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 189s Setting up r-bioc-genelendatabase (1.38.0-1) ... 189s Setting up r-bioc-goseq (1.54.0-1) ... 189s Setting up r-bioc-rgsepd (1.34.0-1) ... 189s Setting up autopkgtest-satdep (0) ... 189s Processing triggers for man-db (2.12.0-3) ... 190s Processing triggers for install-info (7.1-3) ... 190s Processing triggers for libc-bin (2.39-0ubuntu2) ... 203s (Reading database ... 113403 files and directories currently installed.) 203s Removing autopkgtest-satdep (0) ... 204s autopkgtest [17:44:47]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 204s autopkgtest [17:44:47]: test pkg-r-autopkgtest: [----------------------- 205s Test: Try to load the R library rgsepd 206s 206s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 206s Copyright (C) 2024 The R Foundation for Statistical Computing 206s Platform: aarch64-unknown-linux-gnu (64-bit) 206s 206s R is free software and comes with ABSOLUTELY NO WARRANTY. 206s You are welcome to redistribute it under certain conditions. 206s Type 'license()' or 'licence()' for distribution details. 206s 206s R is a collaborative project with many contributors. 206s Type 'contributors()' for more information and 206s 'citation()' on how to cite R or R packages in publications. 206s 206s Type 'demo()' for some demos, 'help()' for on-line help, or 206s 'help.start()' for an HTML browser interface to help. 206s Type 'q()' to quit R. 206s 206s > library('rgsepd') 206s Loading required package: DESeq2 206s Loading required package: S4Vectors 206s Loading required package: stats4 206s Loading required package: BiocGenerics 206s 206s Attaching package: ‘BiocGenerics’ 206s 206s The following objects are masked from ‘package:stats’: 206s 206s IQR, mad, sd, var, xtabs 206s 206s The following objects are masked from ‘package:base’: 206s 206s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 206s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 206s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 206s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 206s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 206s table, tapply, union, unique, unsplit, which.max, which.min 206s 206s 206s Attaching package: ‘S4Vectors’ 206s 206s The following object is masked from ‘package:utils’: 206s 206s findMatches 206s 206s The following objects are masked from ‘package:base’: 206s 206s expand.grid, I, unname 206s 206s Loading required package: IRanges 207s Loading required package: GenomicRanges 207s Loading required package: GenomeInfoDb 208s Loading required package: SummarizedExperiment 208s Loading required package: MatrixGenerics 208s Loading required package: matrixStats 208s 208s Attaching package: ‘MatrixGenerics’ 208s 208s The following objects are masked from ‘package:matrixStats’: 208s 208s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 208s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 208s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 208s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 208s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 208s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 208s colWeightedMeans, colWeightedMedians, colWeightedSds, 208s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 208s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 208s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 208s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 208s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 208s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 208s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 208s rowWeightedSds, rowWeightedVars 208s 208s Loading required package: Biobase 208s Welcome to Bioconductor 208s 208s Vignettes contain introductory material; view with 208s 'browseVignettes()'. To cite Bioconductor, see 208s 'citation("Biobase")', and for packages 'citation("pkgname")'. 208s 208s 208s Attaching package: ‘Biobase’ 208s 208s The following object is masked from ‘package:MatrixGenerics’: 208s 208s rowMedians 208s 208s The following objects are masked from ‘package:matrixStats’: 208s 208s anyMissing, rowMedians 208s 212s Loading required package: goseq 212s Loading required package: BiasedUrn 212s Loading required package: geneLenDataBase 217s 217s Attaching package: ‘geneLenDataBase’ 217s 217s The following object is masked from ‘package:S4Vectors’: 217s 217s unfactor 217s 217s 217s 217s Loading R/GSEPD 1.34.0 217s Building human gene name caches 221s 'select()' returned 1:1 mapping between keys and columns 223s 'select()' returned 1:1 mapping between keys and columns 226s > 226s > 226s Other tests are currently unsupported! 226s They will be progressively added. 227s autopkgtest [17:45:10]: test pkg-r-autopkgtest: -----------------------] 227s autopkgtest [17:45:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 227s pkg-r-autopkgtest PASS 227s autopkgtest [17:45:10]: @@@@@@@@@@@@@@@@@@@@ summary 227s pkg-r-autopkgtest PASS 232s Creating nova instance adt-noble-arm64-r-bioc-rgsepd-20240316-174122-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...