0s autopkgtest [17:41:21]: starting date and time: 2024-03-16 17:41:21+0000
  0s autopkgtest [17:41:21]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:41:21]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.75wh1loi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-residualmatrix --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-11.secgroup --name adt-noble-arm64-r-bioc-residualmatrix-20240316-174121-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
103s autopkgtest [17:43:04]: testbed dpkg architecture: arm64
104s autopkgtest [17:43:05]: testbed apt version: 2.7.12
104s autopkgtest [17:43:05]: @@@@@@@@@@@@@@@@@@@@ test bed setup
104s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
105s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
105s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
105s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
105s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
105s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
105s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
105s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
105s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
105s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
106s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
106s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
106s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
108s Fetched 9060 kB in 2s (3809 kB/s)
108s Reading package lists...
113s Reading package lists...
114s Building dependency tree...
114s Reading state information...
115s Calculating upgrade...
116s The following packages will be REMOVED:
116s   libglib2.0-0 libssl3
116s The following NEW packages will be installed:
116s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
116s The following packages have been kept back:
116s   curl
116s The following packages will be upgraded:
116s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
116s   ubuntu-minimal ubuntu-standard
117s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
117s Need to get 4613 kB of archives.
117s After this operation, 211 kB of additional disk space will be used.
117s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
117s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
117s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
117s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
117s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
117s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
117s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
117s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
117s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
117s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
119s Fetched 4613 kB in 1s (4590 kB/s)
119s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
119s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
119s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
119s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
119s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
119s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
119s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
119s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
119s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
119s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
119s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
119s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
119s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
119s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
119s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
119s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
119s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
119s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
119s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
119s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
119s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
119s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
119s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
119s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
119s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
119s  fwupd depends on libglib2.0-0 (>= 2.79.0).
119s  bolt depends on libglib2.0-0 (>= 2.56.0).
119s 
119s (Reading database ... 
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120s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
120s Selecting previously unselected package libglib2.0-0t64:arm64.
120s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
120s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
120s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
120s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
120s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
120s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
120s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
121s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
121s  wget depends on libssl3 (>= 3.0.0).
121s  u-boot-tools depends on libssl3 (>= 3.0.0).
121s  tnftp depends on libssl3 (>= 3.0.0).
121s  tcpdump depends on libssl3 (>= 3.0.0).
121s  systemd-resolved depends on libssl3 (>= 3.0.0).
121s  systemd depends on libssl3 (>= 3.0.0).
121s  sudo depends on libssl3 (>= 3.0.0).
121s  sbsigntool depends on libssl3 (>= 3.0.0).
121s  rsync depends on libssl3 (>= 3.0.0).
121s  python3-cryptography depends on libssl3 (>= 3.0.0).
121s  openssh-server depends on libssl3 (>= 3.0.10).
121s  openssh-client depends on libssl3 (>= 3.0.10).
121s  mtd-utils depends on libssl3 (>= 3.0.0).
121s  mokutil depends on libssl3 (>= 3.0.0).
121s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
121s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
121s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
121s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
121s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
121s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
121s  libnvme1 depends on libssl3 (>= 3.0.0).
121s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
121s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
121s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
121s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
121s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
121s  kmod depends on libssl3 (>= 3.0.0).
121s  dhcpcd-base depends on libssl3 (>= 3.0.0).
121s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
121s 
121s (Reading database ... 
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121s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
121s Selecting previously unselected package libssl3t64:arm64.
121s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
121s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
121s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
121s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
121s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
121s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
121s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
121s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
121s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
122s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
122s Unpacking ubuntu-minimal (1.536) over (1.535) ...
122s Selecting previously unselected package xdg-user-dirs.
122s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
122s Unpacking xdg-user-dirs (0.18-1) ...
122s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
122s Unpacking ubuntu-standard (1.536) over (1.535) ...
122s Setting up ubuntu-minimal (1.536) ...
122s Setting up xdg-user-dirs (0.18-1) ...
122s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
122s Setting up libtirpc-common (1.3.4+ds-1.1) ...
122s Setting up ubuntu-standard (1.536) ...
122s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
122s No schema files found: doing nothing.
122s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
122s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
122s Setting up openssl (3.0.13-0ubuntu1) ...
122s Setting up readline-common (8.2-3.1) ...
122s Processing triggers for man-db (2.12.0-3) ...
123s Processing triggers for install-info (7.1-3) ...
124s Processing triggers for libc-bin (2.39-0ubuntu2) ...
126s Reading package lists...
126s Building dependency tree...
126s Reading state information...
128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
131s sh: Attempting to set up Debian/Ubuntu apt sources automatically
131s sh: Distribution appears to be Ubuntu
132s Reading package lists...
134s Building dependency tree...
134s Reading state information...
135s eatmydata is already the newest version (131-1).
135s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
135s Reading package lists...
135s Building dependency tree...
135s Reading state information...
136s dbus is already the newest version (1.14.10-4ubuntu1).
136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
136s Reading package lists...
137s Building dependency tree...
137s Reading state information...
138s rng-tools-debian is already the newest version (2.4).
138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
139s Reading package lists...
139s Building dependency tree...
139s Reading state information...
140s The following packages will be REMOVED:
140s   cloud-init* python3-configobj* python3-debconf*
143s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
143s After this operation, 3252 kB disk space will be freed.
143s (Reading database ... 
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(Reading database ... 74774 files and directories currently installed.)
143s Removing cloud-init (24.1.1-0ubuntu1) ...
144s Removing python3-configobj (5.0.8-3) ...
145s Removing python3-debconf (1.5.86) ...
145s Processing triggers for man-db (2.12.0-3) ...
145s (Reading database ... 
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(Reading database ... 74385 files and directories currently installed.)
145s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
147s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
147s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
147s invoke-rc.d: policy-rc.d denied execution of try-restart.
148s Reading package lists...
148s Building dependency tree...
148s Reading state information...
148s linux-generic is already the newest version (6.8.0-11.11+1).
148s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
149s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
149s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
149s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
152s Reading package lists...
152s Reading package lists...
152s Building dependency tree...
152s Reading state information...
153s Calculating upgrade...
153s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
153s Reading package lists...
154s Building dependency tree...
154s Reading state information...
154s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
155s autopkgtest [17:43:56]: rebooting testbed after setup commands that affected boot
193s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
201s autopkgtest [17:44:42]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
203s autopkgtest [17:44:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-residualmatrix
208s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-residualmatrix 1.12.0+dfsg-1 (dsc) [2230 B]
208s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-residualmatrix 1.12.0+dfsg-1 (tar) [11.8 kB]
208s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-residualmatrix 1.12.0+dfsg-1 (diff) [2472 B]
209s gpgv: Signature made Thu Nov 30 12:01:21 2023 UTC
209s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
209s gpgv:                issuer "tille@debian.org"
209s gpgv: Can't check signature: No public key
209s dpkg-source: warning: cannot verify inline signature for ./r-bioc-residualmatrix_1.12.0+dfsg-1.dsc: no acceptable signature found
209s autopkgtest [17:44:50]: testing package r-bioc-residualmatrix version 1.12.0+dfsg-1
209s autopkgtest [17:44:50]: build not needed
210s autopkgtest [17:44:51]: test pkg-r-autopkgtest: preparing testbed
212s Reading package lists...
212s Building dependency tree...
212s Reading state information...
213s Starting pkgProblemResolver with broken count: 0
213s Starting 2 pkgProblemResolver with broken count: 0
213s Done
213s The following additional packages will be installed:
213s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
213s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
213s   fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax
213s   g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
213s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
213s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
213s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
213s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
213s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
213s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
213s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
213s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
213s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
213s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
213s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
213s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
213s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
213s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
213s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
213s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
213s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
213s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev
213s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
213s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
213s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
213s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler
213s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
213s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
213s   r-bioc-beachmat r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular
213s   r-bioc-biocstyle r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics
213s   r-bioc-residualmatrix r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix
213s   r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc r-cran-abind
213s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio
213s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools
213s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj
213s   r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap
213s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
213s   r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools
213s   r-cran-httpuv r-cran-irlba r-cran-jquerylib r-cran-jsonlite r-cran-knitr
213s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
213s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
213s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
213s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-promises r-cran-ps
213s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang
213s   r-cran-rmarkdown r-cran-rprojroot r-cran-rsvd r-cran-sass r-cran-shiny
213s   r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat
213s   r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo
213s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
213s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
213s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
213s Suggested packages:
213s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
213s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
213s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
213s   | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc
213s   libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
213s   libboost-context1.83-dev libboost-contract1.83-dev
213s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
213s   libboost-exception1.83-dev libboost-fiber1.83-dev
213s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
213s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
213s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
213s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
213s   libboost-numpy1.83-dev libboost-program-options1.83-dev
213s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
213s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
213s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
213s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
213s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
213s   glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
213s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
213s   tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex
213s   pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff
213s   ghc php python ruby libjs-katex citation-style-language-styles elpa-ess
213s   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic
213s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo
213s   r-cran-rcmdcheck r-bioc-hdf5array r-bioc-biobase r-bioc-genomicranges
213s   r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy
213s   r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-foreach r-cran-bbmisc
213s   r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments
213s   r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-genefilter
213s   r-bioc-summarizedexperiment r-cran-lobstr r-bioc-delayedmatrixstats
213s   r-bioc-genomicfeatures r-bioc-sparsematrixstats r-bioc-graph r-cran-covr
213s   r-cran-spelling r-cran-rstudioapi r-cran-markdown r-cran-getopt r-cran-httr
213s   r-cran-bit64 r-cran-dbi r-cran-dplyr r-cran-formattable r-cran-ggplot2
213s   r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival
213s   r-cran-units r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-rmpi
213s   r-cran-rlecuyer r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-purrr
213s   r-cran-tidyr r-cran-plm r-cran-zoo debhelper ghostscript gv
213s   | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2
213s   hintview texlive-latex-base-doc wp2latex
213s Recommended packages:
213s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
213s   r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-curl
213s   r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui
213s   r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot
213s   r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery
213s   r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress
213s   r-cran-scales r-cran-gh r-cran-spelling r-cran-unitizer r-cran-dplyr
213s   r-cran-rsvg r-cran-survival r-cran-dbi r-cran-rsqlite r-cran-cairo
213s   r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf
213s   r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate
213s   r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr
213s   r-cran-tidyverse r-cran-r.devices r-cran-lubridate r-cran-bitops
213s   r-cran-mathjaxr r-cran-mockr r-cran-webfakes r-cran-future r-cran-purrr
213s   r-cran-pingr r-cran-usethis r-cran-dygraphs r-cran-plyr r-cran-data.table
213s   r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
213s   r-cran-zeallot r-cran-renv r-cran-runit lmodern dvisvgm
213s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
213s   x11-xserver-utils
214s The following NEW packages will be installed:
214s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
214s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
214s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
214s   fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13
214s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
214s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
214s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
214s   javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev
214s   libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev
214s   libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1
214s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
214s   libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23
214s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
214s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
214s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
214s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr
214s   libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js
214s   libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker
214s   libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4
214s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
214s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
214s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
214s   libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev
214s   libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0
214s   libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2
214s   libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6
214s   libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler
214s   node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data
214s   pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev
214s   r-bioc-beachmat r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular
214s   r-bioc-biocstyle r-bioc-delayedarray r-bioc-iranges r-bioc-matrixgenerics
214s   r-bioc-residualmatrix r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix
214s   r-bioc-sparsearray r-bioc-xvector r-bioc-zlibbioc r-cran-abind
214s   r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bookdown r-cran-brio
214s   r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools
214s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc r-cran-diffobj
214s   r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap
214s   r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger
214s   r-cran-futile.options r-cran-glue r-cran-highr r-cran-htmltools
214s   r-cran-httpuv r-cran-irlba r-cran-jquerylib r-cran-jsonlite r-cran-knitr
214s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler
214s   r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
214s   r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten
214s   r-cran-pkgload r-cran-praise r-cran-processx r-cran-promises r-cran-ps
214s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rematch2 r-cran-rlang
214s   r-cran-rmarkdown r-cran-rprojroot r-cran-rsvd r-cran-sass r-cran-shiny
214s   r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat
214s   r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo
214s   r-cran-withr r-cran-xfun r-cran-xtable r-cran-yaml rpcsvc-proto t1utils
214s   tex-common texlive-base texlive-bibtex-extra texlive-binaries
214s   texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev
214s 0 upgraded, 250 newly installed, 0 to remove and 0 not upgraded.
214s Need to get 358 MB/358 MB of archives.
214s After this operation, 1257 MB of additional disk space will be used.
214s Get:1 /tmp/autopkgtest.6QKmKF/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B]
214s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
214s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
214s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
214s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
214s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
214s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
214s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
214s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
214s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
214s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
215s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
215s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
215s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
215s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
215s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
215s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
215s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
215s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
215s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
215s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
215s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
215s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
215s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
216s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
216s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
216s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
216s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
216s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
216s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
216s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
216s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
216s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
216s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
216s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
216s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
216s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
216s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
216s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
216s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
216s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
216s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
216s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB]
217s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
217s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
217s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
217s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
217s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
217s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
217s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
217s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
217s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
217s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB]
217s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB]
217s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB]
217s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
217s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
217s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB]
217s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B]
217s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
217s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
217s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
217s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
217s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
217s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
217s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
217s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
217s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
217s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
217s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
218s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
218s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
218s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
218s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
218s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
218s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
218s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
218s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
218s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
218s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
218s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
218s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
218s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
218s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
218s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
218s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
218s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
218s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
218s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
218s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
218s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB]
218s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
218s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB]
218s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
218s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
218s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
218s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
218s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
218s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
218s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
218s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
218s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
218s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
218s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
218s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
218s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
219s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
219s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
219s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
219s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
219s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
219s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
219s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB]
219s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB]
219s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
219s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
219s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
219s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB]
219s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
219s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB]
219s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB]
219s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
219s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
219s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
219s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
219s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
219s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
219s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
219s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB]
219s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB]
219s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB]
219s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB]
219s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB]
219s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
219s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
219s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
219s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
220s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
220s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
220s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
220s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
220s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
220s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
220s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
220s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
220s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
220s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
220s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
220s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
220s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
220s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
220s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
220s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
221s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB]
221s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
221s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
221s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
221s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB]
221s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
221s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB]
221s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
221s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
221s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB]
221s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB]
221s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
221s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
221s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB]
221s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB]
221s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
221s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
221s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
221s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
221s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
221s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
221s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
221s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB]
221s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scaledmatrix all 1.10.0+dfsg-1 [320 kB]
221s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-irlba arm64 2.3.5.1-2 [293 kB]
221s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB]
221s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocsingular arm64 1.18.0+ds-1 [350 kB]
221s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
221s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
221s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
221s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
221s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
221s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
221s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
221s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
221s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
221s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
221s Get:191 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
221s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
221s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
221s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
221s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
221s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
221s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
221s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
221s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
221s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
221s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
221s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
221s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
221s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
222s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
222s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
222s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
222s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
222s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
222s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
222s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
222s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
222s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
222s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
222s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
222s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
222s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
222s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
222s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
222s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
222s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
222s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
222s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB]
223s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
223s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB]
223s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB]
223s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB]
223s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB]
224s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB]
224s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB]
227s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB]
227s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-residualmatrix all 1.12.0+dfsg-1 [313 kB]
227s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB]
227s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB]
227s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB]
227s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB]
227s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB]
227s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB]
227s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
227s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
227s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
227s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB]
227s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
227s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB]
227s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB]
227s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB]
227s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
227s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB]
227s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB]
227s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB]
228s Preconfiguring packages ...
229s Fetched 358 MB in 13s (27.3 MB/s)
229s Selecting previously unselected package libc-dev-bin.
229s (Reading database ... 
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229s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
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229s Selecting previously unselected package linux-libc-dev:arm64.
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229s Selecting previously unselected package libcrypt-dev:arm64.
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234s Selecting previously unselected package fonts-dejavu-mono.
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236s Selecting previously unselected package libgfortran5:arm64.
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237s Selecting previously unselected package liblatex-tounicode-perl.
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241s Selecting previously unselected package libcairo2:arm64.
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241s Selecting previously unselected package libdatrie1:arm64.
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250s Selecting previously unselected package r-bioc-biocgenerics.
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250s Selecting previously unselected package r-cran-lattice.
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250s Selecting previously unselected package r-bioc-matrixgenerics.
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250s Selecting previously unselected package r-bioc-s4arrays.
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252s Selecting previously unselected package r-bioc-beachmat.
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253s Selecting previously unselected package r-cran-formatr.
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254s Selecting previously unselected package r-cran-codetools.
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255s Selecting previously unselected package r-bioc-biocparallel.
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255s Selecting previously unselected package r-cran-irlba.
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256s Selecting previously unselected package r-bioc-biocsingular.
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256s Selecting previously unselected package r-cran-base64enc.
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258s Selecting previously unselected package r-cran-knitr.
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258s Selecting previously unselected package r-cran-jsonlite.
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258s Selecting previously unselected package r-cran-glue.
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258s Selecting previously unselected package r-cran-memoise.
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259s Selecting previously unselected package r-cran-r6.
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259s Selecting previously unselected package r-cran-rappdirs.
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260s Selecting previously unselected package r-cran-sass.
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263s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
263s Selecting previously unselected package r-cran-bslib.
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263s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
263s Selecting previously unselected package r-cran-fontawesome.
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264s Selecting previously unselected package r-cran-magrittr.
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264s Selecting previously unselected package r-cran-stringi.
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264s Selecting previously unselected package r-cran-vctrs.
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265s Selecting previously unselected package r-cran-stringr.
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265s Selecting previously unselected package r-cran-tinytex.
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265s Selecting previously unselected package libjs-modernizr.
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265s Selecting previously unselected package r-cran-later.
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265s Selecting previously unselected package r-cran-promises.
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265s Selecting previously unselected package r-cran-httpuv.
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265s Selecting previously unselected package r-cran-xtable.
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265s Selecting previously unselected package r-cran-sourcetools.
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265s Selecting previously unselected package r-cran-withr.
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265s Selecting previously unselected package r-cran-commonmark.
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265s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
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265s Selecting previously unselected package r-cran-shiny.
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266s Selecting previously unselected package r-cran-rmarkdown.
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266s Selecting previously unselected package r-cran-biocmanager.
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270s Selecting previously unselected package r-bioc-biocstyle.
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274s Selecting previously unselected package r-cran-testthat.
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274s Setting up libjs-json (0~20221030+~1.0.8-1) ...
274s Setting up javascript-common (11+nmu1) ...
274s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
274s Setting up libpixman-1-0:arm64 (0.42.2-1) ...
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275s 
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275s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ...
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275s Setting up libdatrie1:arm64 (0.2.13-3) ...
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280s Setting up libxft2:arm64 (2.3.6-1) ...
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280s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ...
280s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ...
280s Setting up cpp-13 (13.2.0-17ubuntu2) ...
280s Setting up libtk8.6:arm64 (8.6.13-2) ...
280s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ...
280s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
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280s Setting up libcairo2:arm64 (1.18.0-1) ...
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281s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ...
281s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
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281s Setting up g++-13 (13.2.0-17ubuntu2) ...
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281s Setting up libpng-dev:arm64 (1.6.43-1) ...
281s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ...
281s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
281s Setting up libxaw7:arm64 (2:1.0.14-1) ...
281s Setting up gcc (4:13.2.0-7ubuntu1) ...
281s Setting up gfortran-13 (13.2.0-17ubuntu2) ...
281s Setting up r-base-core (4.3.2-1build1) ...
281s 
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281s Setting up r-cran-crayon (1.5.2-1) ...
281s Setting up r-cran-sourcetools (0.1.7-1-1) ...
281s Setting up r-cran-futile.options (1.0.1-3build1) ...
281s Setting up r-cran-lattice (0.22-5-1) ...
281s Setting up r-cran-ps (1.7.6-1) ...
281s Setting up r-cran-formatr (1.14-1) ...
281s Setting up texlive-binaries (2023.20230311.66589-9) ...
281s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
281s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
281s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
281s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
281s Setting up r-cran-commonmark (1.9.1-1) ...
281s Setting up r-cran-r6 (2.5.1-1) ...
281s Setting up r-cran-pkgkitten (0.2.3-1) ...
281s Setting up texlive-base (2023.20240207-1) ...
282s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
282s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
282s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
282s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
283s Setting up r-cran-magrittr (2.0.3-1) ...
283s Setting up r-cran-rappdirs (0.3.3-1) ...
283s Setting up r-cran-littler (0.3.19-1) ...
283s Setting up r-cran-bh (1.84.0-1) ...
283s Setting up r-cran-fs (1.6.3+dfsg-1) ...
283s Setting up r-cran-rcpp (1.0.12-1) ...
283s Setting up r-cran-codetools (0.2-19-1) ...
283s Setting up r-cran-brio (1.1.4-1) ...
283s Setting up r-cran-diffobj (0.3.5-1) ...
283s Setting up r-bioc-biocgenerics (0.48.1-2) ...
283s Setting up r-cran-rlang (1.1.3-1) ...
283s Setting up r-cran-matrixstats (1.2.0-1) ...
283s Setting up littler (0.3.19-1) ...
283s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
283s Setting up r-cran-xfun (0.41+dfsg-1) ...
283s Setting up r-cran-withr (2.5.0-1) ...
283s Setting up r-cran-processx (3.8.3-1) ...
283s Setting up r-cran-mime (0.12-1) ...
283s Setting up r-cran-praise (1.0.0-4build1) ...
283s Setting up r-cran-base64enc (0.1-3-3) ...
283s Setting up r-cran-abind (1.4-5-2) ...
283s Setting up r-cran-digest (0.6.34-1) ...
283s Setting up r-cran-yaml (2.3.8-1) ...
283s Setting up r-cran-lambda.r (1.2.4-2build1) ...
283s Setting up r-cran-evaluate (0.23-1) ...
283s Setting up r-cran-highr (0.10+dfsg-1) ...
283s Setting up r-cran-fansi (1.0.5-1) ...
283s Setting up r-cran-snow (1:0.4.4-2) ...
283s Setting up r-cran-glue (1.7.0-1) ...
283s Setting up r-cran-xtable (1:1.8-4-2) ...
283s Setting up r-cran-cli (3.6.2-1) ...
283s Setting up gfortran (4:13.2.0-7ubuntu1) ...
283s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
283s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
283s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
283s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
283s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
283s Setting up r-cran-rprojroot (2.0.4-1) ...
283s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
283s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
283s Setting up r-cran-fastmap (1.1.1-1) ...
283s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
283s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
283s Setting up r-cran-utf8 (1.2.4-1) ...
283s Setting up r-cran-stringi (1.8.3-1) ...
283s Setting up texlive-latex-base (2023.20240207-1) ...
283s Setting up r-cran-cpp11 (0.4.7-1) ...
283s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
283s Setting up r-cran-futile.logger (1.4.3-4build1) ...
283s Setting up r-cran-later (1.3.2+dfsg-1) ...
283s Setting up r-cran-matrix (1.6-5-1) ...
283s Setting up r-cran-tinytex (0.49-1) ...
283s Setting up r-cran-irlba (2.3.5.1-2) ...
283s Setting up r-cran-knitr (1.45+dfsg-1) ...
283s Setting up g++ (4:13.2.0-7ubuntu1) ...
283s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
283s Setting up r-cran-cachem (1.0.8-1) ...
283s Setting up build-essential (12.10ubuntu1) ...
283s Setting up r-bioc-iranges (2.36.0-1) ...
283s Setting up r-cran-vctrs (0.6.5-1) ...
283s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
283s Setting up r-cran-ellipsis (0.3.2-2) ...
283s Setting up r-base-dev (4.3.2-1build1) ...
283s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
283s Setting up r-cran-stringr (1.5.1-1) ...
283s Setting up r-bioc-biocparallel (1.36.0-1) ...
283s Setting up r-cran-callr (3.7.3-2) ...
283s Setting up r-cran-desc (1.4.3-1) ...
283s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
283s Setting up texlive-bibtex-extra (2023.20240207-1) ...
283s Setting up r-cran-rsvd (1.0.5-1) ...
283s Setting up r-cran-memoise (2.0.1-1) ...
283s Setting up r-cran-promises (1.2.1+dfsg-1) ...
283s Setting up r-cran-htmltools (0.5.7-1) ...
283s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
283s Setting up r-bioc-xvector (0.42.0-1) ...
283s Setting up r-cran-pkgbuild (1.4.3-1) ...
283s Setting up r-cran-sass (0.4.8+dfsg-1) ...
283s Setting up r-cran-pkgload (1.3.4-1) ...
283s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
283s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
283s Setting up r-cran-rematch2 (2.1.2-2build1) ...
283s Setting up r-cran-fontawesome (0.5.2-1) ...
283s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
283s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
283s Setting up r-cran-waldo (0.5.2-1build1) ...
283s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
283s Setting up r-bioc-residualmatrix (1.12.0+dfsg-1) ...
283s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
283s Setting up r-cran-testthat (3.2.1-1) ...
283s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
283s Setting up r-bioc-beachmat (2.18.1+ds-1) ...
283s Setting up r-bioc-scaledmatrix (1.10.0+dfsg-1) ...
283s Setting up r-cran-bookdown (0.37+dfsg-1) ...
283s Setting up r-bioc-biocsingular (1.18.0+ds-1) ...
283s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ...
283s Setting up autopkgtest-satdep (0) ...
283s Processing triggers for man-db (2.12.0-3) ...
284s Processing triggers for install-info (7.1-3) ...
284s Processing triggers for libc-bin (2.39-0ubuntu2) ...
285s Processing triggers for tex-common (6.18) ...
286s Running updmap-sys. This may take some time... done.
286s Running mktexlsr /var/lib/texmf ... done.
286s Building format(s) --all.
325s 	This may take some time... done.
341s (Reading database ... 121611 files and directories currently installed.)
341s Removing autopkgtest-satdep (0) ...
342s autopkgtest [17:47:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
342s autopkgtest [17:47:03]: test pkg-r-autopkgtest: [-----------------------
342s Test: Try to load the R library ResidualMatrix
343s 
343s R version 4.3.2 (2023-10-31) -- "Eye Holes"
343s Copyright (C) 2023 The R Foundation for Statistical Computing
343s Platform: aarch64-unknown-linux-gnu (64-bit)
343s 
343s R is free software and comes with ABSOLUTELY NO WARRANTY.
343s You are welcome to redistribute it under certain conditions.
343s Type 'license()' or 'licence()' for distribution details.
343s 
343s R is a collaborative project with many contributors.
343s Type 'contributors()' for more information and
343s 'citation()' on how to cite R or R packages in publications.
343s 
343s Type 'demo()' for some demos, 'help()' for on-line help, or
343s 'help.start()' for an HTML browser interface to help.
343s Type 'q()' to quit R.
343s 
343s > library('ResidualMatrix')
347s > 
347s > 
348s Other tests are currently unsupported!
348s They will be progressively added.
349s autopkgtest [17:47:10]: test pkg-r-autopkgtest: -----------------------]
352s pkg-r-autopkgtest    PASS
352s autopkgtest [17:47:13]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
353s autopkgtest [17:47:14]: @@@@@@@@@@@@@@@@@@@@ summary
353s pkg-r-autopkgtest    PASS
365s Creating nova instance adt-noble-arm64-r-bioc-residualmatrix-20240316-174121-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...