0s autopkgtest [17:40:27]: starting date and time: 2024-03-16 17:40:27+0000 0s autopkgtest [17:40:27]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:40:27]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.utjxt328/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-pwmenrich --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-6.secgroup --name adt-noble-arm64-r-bioc-pwmenrich-20240316-174027-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 150s autopkgtest [17:42:57]: testbed dpkg architecture: arm64 150s autopkgtest [17:42:57]: testbed apt version: 2.7.12 150s autopkgtest [17:42:57]: @@@@@@@@@@@@@@@@@@@@ test bed setup 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 152s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 152s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 152s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 154s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 154s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 154s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 154s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 154s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 155s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 155s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 155s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 156s Fetched 9060 kB in 5s (2010 kB/s) 157s Reading package lists... 161s Reading package lists... 161s Building dependency tree... 161s Reading state information... 162s Calculating upgrade... 163s The following packages will be REMOVED: 163s libglib2.0-0 libssl3 163s The following NEW packages will be installed: 163s libglib2.0-0t64 libssl3t64 xdg-user-dirs 163s The following packages have been kept back: 163s curl 163s The following packages will be upgraded: 163s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 163s ubuntu-minimal ubuntu-standard 163s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 163s Need to get 4613 kB of archives. 163s After this operation, 211 kB of additional disk space will be used. 163s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 164s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 164s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 164s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 164s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 164s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 164s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 164s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 164s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 164s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 166s Fetched 4613 kB in 1s (6051 kB/s) 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 167s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 167s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 167s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 167s udisks2 depends on libglib2.0-0 (>= 2.77.0). 167s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 167s python3-gi depends on libglib2.0-0 (>= 2.77.0). 167s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 167s netplan.io depends on libglib2.0-0 (>= 2.70.0). 167s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 167s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 167s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 167s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 167s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 167s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 167s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 167s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 167s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 167s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 167s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 167s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 167s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 167s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 167s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 167s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 167s fwupd depends on libglib2.0-0 (>= 2.79.0). 167s bolt depends on libglib2.0-0 (>= 2.56.0). 167s 167s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 167s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 168s Selecting previously unselected package libglib2.0-0t64:arm64. 169s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 169s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 169s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 169s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 169s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 169s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 169s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 169s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 169s wget depends on libssl3 (>= 3.0.0). 169s u-boot-tools depends on libssl3 (>= 3.0.0). 169s tnftp depends on libssl3 (>= 3.0.0). 169s tcpdump depends on libssl3 (>= 3.0.0). 169s systemd-resolved depends on libssl3 (>= 3.0.0). 169s systemd depends on libssl3 (>= 3.0.0). 169s sudo depends on libssl3 (>= 3.0.0). 169s sbsigntool depends on libssl3 (>= 3.0.0). 169s rsync depends on libssl3 (>= 3.0.0). 169s python3-cryptography depends on libssl3 (>= 3.0.0). 169s openssh-server depends on libssl3 (>= 3.0.10). 169s openssh-client depends on libssl3 (>= 3.0.10). 169s mtd-utils depends on libssl3 (>= 3.0.0). 169s mokutil depends on libssl3 (>= 3.0.0). 169s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 169s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 169s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 169s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 169s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 169s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 169s libnvme1 depends on libssl3 (>= 3.0.0). 169s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 169s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 169s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 169s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 169s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 169s kmod depends on libssl3 (>= 3.0.0). 169s dhcpcd-base depends on libssl3 (>= 3.0.0). 169s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 169s 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 170s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 170s Selecting previously unselected package libssl3t64:arm64. 170s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 170s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 170s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 170s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 170s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 170s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 170s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 170s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 171s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 171s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 171s Unpacking ubuntu-minimal (1.536) over (1.535) ... 171s Selecting previously unselected package xdg-user-dirs. 171s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 171s Unpacking xdg-user-dirs (0.18-1) ... 171s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 171s Unpacking ubuntu-standard (1.536) over (1.535) ... 171s Setting up ubuntu-minimal (1.536) ... 171s Setting up xdg-user-dirs (0.18-1) ... 171s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 171s Setting up libtirpc-common (1.3.4+ds-1.1) ... 171s Setting up ubuntu-standard (1.536) ... 171s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 171s No schema files found: doing nothing. 171s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 171s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 171s Setting up openssl (3.0.13-0ubuntu1) ... 171s Setting up readline-common (8.2-3.1) ... 171s Processing triggers for man-db (2.12.0-3) ... 172s Processing triggers for install-info (7.1-3) ... 173s Processing triggers for libc-bin (2.39-0ubuntu2) ... 173s Reading package lists... 173s Building dependency tree... 173s Reading state information... 174s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 176s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 176s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 176s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 176s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 180s Reading package lists... 180s Reading package lists... 180s Building dependency tree... 180s Reading state information... 181s Calculating upgrade... 181s The following packages have been kept back: 181s curl 182s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 182s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 187s autopkgtest [17:43:34]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 187s autopkgtest [17:43:34]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-pwmenrich 189s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-pwmenrich 4.38.0-1 (dsc) [2183 B] 189s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-pwmenrich 4.38.0-1 (tar) [1647 kB] 189s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-pwmenrich 4.38.0-1 (diff) [2572 B] 190s gpgv: Signature made Thu Nov 30 10:31:58 2023 UTC 190s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 190s gpgv: issuer "tillea@rki.de" 190s gpgv: Can't check signature: No public key 190s dpkg-source: warning: cannot verify inline signature for ./r-bioc-pwmenrich_4.38.0-1.dsc: no acceptable signature found 190s autopkgtest [17:43:37]: testing package r-bioc-pwmenrich version 4.38.0-1 191s autopkgtest [17:43:38]: build not needed 196s autopkgtest [17:43:43]: test pkg-r-autopkgtest: preparing testbed 198s Reading package lists... 198s Building dependency tree... 198s Reading state information... 199s Starting pkgProblemResolver with broken count: 0 199s Starting 2 pkgProblemResolver with broken count: 0 199s Done 199s The following additional packages will be installed: 199s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 199s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 199s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 199s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 199s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 199s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 199s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 199s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 199s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 200s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 200s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 200s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 200s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 200s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 200s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 200s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 200s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 200s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 200s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 200s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 200s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 200s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 200s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 200s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 200s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 200s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 200s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 200s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 200s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 200s pkgconf-bin r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics 200s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biostrings 200s r-bioc-bsgenome r-bioc-delayedarray r-bioc-genomeinfodb 200s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicranges 200s r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwmenrich r-bioc-rhtslib 200s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 200s r-bioc-seqlogo r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 200s r-bioc-zlibbioc r-cran-abind r-cran-base64enc r-cran-bh r-cran-biocmanager 200s r-cran-bitops r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 200s r-cran-callr r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 200s r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest r-cran-ellipsis 200s r-cran-evaluate r-cran-evd r-cran-fansi r-cran-fastmap r-cran-fontawesome 200s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 200s r-cran-gdata r-cran-glue r-cran-gtools r-cran-highr r-cran-htmltools 200s r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r 200s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 200s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-pillar 200s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 200s r-cran-praise r-cran-processx r-cran-promises r-cran-ps r-cran-r6 200s r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-restfulr 200s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass 200s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 200s r-cran-testthat r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs 200s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml 200s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 200s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 200s zlib1g-dev 200s Suggested packages: 200s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 200s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 200s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 200s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 200s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 200s libboost-context1.83-dev libboost-contract1.83-dev 200s libboost-coroutine1.83-dev libboost-date-time1.83-dev 200s libboost-exception1.83-dev libboost-fiber1.83-dev 200s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 200s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 200s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 200s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 200s libboost-numpy1.83-dev libboost-program-options1.83-dev 200s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 200s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 200s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 200s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 200s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 200s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 200s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 200s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 200s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 200s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 200s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 200s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 200s r-bioc-all r-cran-runit r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 200s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 200s r-bioc-variantannotation r-bioc-shortread r-cran-batchtools 200s r-cran-data.table r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-genefilter 200s r-cran-lobstr r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger 200s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest 200s r-bioc-sparsematrixstats r-bioc-limma r-bioc-org.hs.eg.db r-bioc-graph 200s r-bioc-rhdf5 r-cran-covr r-cran-spelling r-cran-rstudioapi r-cran-interp 200s r-cran-markdown r-cran-getopt r-cran-httr r-cran-bit64 r-cran-dbi 200s r-cran-dplyr r-cran-formattable r-cran-ggplot2 r-cran-nanotime 200s r-cran-palmerpenguins r-cran-scales r-cran-survival r-cran-units 200s r-cran-vdiffr r-cran-roxygen2 r-cran-inline r-cran-rmpi r-cran-rlecuyer 200s r-cran-bench r-cran-blob r-cran-here r-cran-hms r-cran-purrr r-cran-tidyr 200s r-cran-plm r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk 200s xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview 200s texlive-latex-base-doc wp2latex 200s Recommended packages: 200s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 200s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-curl 200s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 200s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot 200s r-cran-covr r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery 200s r-cran-whoami r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress 200s r-cran-scales r-cran-gh r-cran-spelling r-cran-unitizer r-cran-dplyr 200s r-cran-rsvg r-cran-survival r-cran-dbi r-cran-rsqlite r-cran-cairo 200s r-cran-markdown r-cran-ragg r-cran-httr r-cran-r.rsp r-cran-sf 200s r-cran-gridsvg r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate 200s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 200s r-cran-tidyverse r-cran-r.devices r-cran-lubridate r-cran-mathjaxr 200s r-cran-mockr r-cran-webfakes r-cran-future r-cran-purrr r-cran-pingr 200s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-data.table 200s r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown 200s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 200s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 200s The following packages will be REMOVED: 200s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 200s The following NEW packages will be installed: 200s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 200s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 200s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 200s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 200s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 200s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 200s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 200s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 200s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 200s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 200s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 200s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 200s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 200s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 200s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 200s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 200s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 200s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 200s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 200s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 200s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 200s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 200s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 200s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 200s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 200s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 200s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 200s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 200s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 200s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 200s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 200s r-bioc-biocstyle r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 200s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 200s r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-pwmenrich 200s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 200s r-bioc-s4vectors r-bioc-seqlogo r-bioc-sparsearray 200s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 200s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bitops r-cran-bookdown 200s r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli 200s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-desc 200s r-cran-diffobj r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-evd 200s r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 200s r-cran-futile.logger r-cran-futile.options r-cran-gdata r-cran-glue 200s r-cran-gtools r-cran-highr r-cran-htmltools r-cran-httpuv r-cran-jquerylib 200s r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice 200s r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 200s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-pillar r-cran-pkgbuild 200s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise 200s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 200s r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 200s r-cran-rlang r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 200s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-testthat 200s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 200s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto 200s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 200s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 200s The following packages will be upgraded: 200s curl 200s 1 upgraded, 270 newly installed, 5 to remove and 0 not upgraded. 200s Need to get 414 MB/414 MB of archives. 200s After this operation, 1322 MB of additional disk space will be used. 200s Get:1 /tmp/autopkgtest.NBCLPX/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 200s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 200s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 200s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 201s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 201s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 201s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 201s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 201s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 201s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 201s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 201s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 201s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 201s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 201s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 201s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 201s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 201s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 201s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 201s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 201s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 201s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 201s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 201s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 201s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 201s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 201s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 201s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 201s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 201s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 201s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 202s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 202s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 202s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 202s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 202s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 202s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 202s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 202s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 202s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 202s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 202s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 202s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 202s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 202s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 202s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 202s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 202s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 202s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 202s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 202s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 202s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 202s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 203s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 203s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 203s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 203s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 203s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 203s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 203s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 203s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 203s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 203s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 203s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 203s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 203s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 203s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 203s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 203s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 203s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 203s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 203s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 203s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 203s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 203s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 203s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 203s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 203s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 203s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 203s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 203s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 203s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 203s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 203s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 203s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 203s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 203s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 203s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 203s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 203s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 203s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 203s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 203s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 203s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 203s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 204s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 204s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 204s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 204s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 204s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 204s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 204s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 204s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 204s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 204s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 204s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 204s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 204s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 204s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 204s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 204s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 204s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 204s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 204s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 204s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 204s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 204s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 204s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 204s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 204s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 204s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 204s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 204s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 204s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 204s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 205s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 205s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 205s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 205s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 205s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 205s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 205s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 205s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 205s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 205s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 205s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 205s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 205s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 205s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 205s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 205s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 205s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 205s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 205s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 206s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 206s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 206s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 206s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 206s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 206s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 206s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 206s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 206s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 206s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 206s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 206s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 206s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 206s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 206s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 206s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 206s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 206s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 206s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 206s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 206s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 206s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 206s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 206s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 206s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 206s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 206s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 206s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 206s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 206s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 206s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 206s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 206s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 206s Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 207s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 207s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 207s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 207s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 207s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 207s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 207s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 207s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 207s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 207s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 207s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 207s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 207s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 207s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 207s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 207s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 207s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 207s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 207s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 207s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 207s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 207s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 207s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 207s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 207s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 207s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 207s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 207s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 207s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 207s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 207s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 207s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 207s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 207s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 208s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 208s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 208s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 208s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 208s Get:217 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 208s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 208s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 209s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 209s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 212s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 212s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 212s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 212s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 212s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 212s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 212s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 212s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 212s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 213s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 213s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 213s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 213s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 213s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 213s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 213s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 213s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 213s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 213s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 213s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 213s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 213s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 213s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 213s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 213s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 213s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 214s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 214s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-seqlogo all 1.68.0+dfsg-1 [163 kB] 214s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtools arm64 3.9.5-1 [340 kB] 214s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gdata all 3.0.0-1 [483 kB] 214s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evd arm64 2.3-6.1-1 [1732 kB] 214s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-pwmenrich all 4.38.0-1 [2053 kB] 214s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 214s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 214s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 214s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 214s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 214s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 214s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 214s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 214s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 214s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 214s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 214s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 214s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 214s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 214s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 214s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 214s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 214s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 217s Preconfiguring packages ... 217s Fetched 414 MB in 14s (28.8 MB/s) 217s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 217s wget depends on libpsl5 (>= 0.16.0). 217s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 217s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 217s 217s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 217s Removing libpsl5:arm64 (0.21.2-1build1) ... 218s Selecting previously unselected package libpsl5t64:arm64. 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 218s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 218s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 218s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 218s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 218s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 218s Selecting previously unselected package libcurl4t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 219s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 219s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 219s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 219s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 219s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 219s 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 219s Removing libpng16-16:arm64 (1.6.43-1) ... 219s Selecting previously unselected package libpng16-16t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 219s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 219s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 219s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 219s parted depends on libreadline8 (>= 6.0). 219s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 219s gpgsm depends on libreadline8 (>= 6.0). 219s gpgconf depends on libreadline8 (>= 6.0). 219s gpg depends on libreadline8 (>= 6.0). 219s gawk depends on libreadline8 (>= 6.0). 219s fdisk depends on libreadline8 (>= 6.0). 219s 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 219s Removing libreadline8:arm64 (8.2-3) ... 219s Selecting previously unselected package libreadline8t64:arm64. 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 220s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 220s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 220s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 220s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 220s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 220s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 220s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 220s lsof depends on libtirpc3 (>= 1.0.2). 220s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 220s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 220s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 220s iproute2 depends on libtirpc3 (>= 1.0.2). 220s 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 220s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 220s Selecting previously unselected package libtirpc3t64:arm64. 220s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 220s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 220s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 220s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 220s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 220s Selecting previously unselected package libc-dev-bin. 220s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 220s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 220s Selecting previously unselected package linux-libc-dev:arm64. 220s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 220s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 220s Selecting previously unselected package libcrypt-dev:arm64. 220s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 220s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 220s Selecting previously unselected package libtirpc-dev:arm64. 220s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 220s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 221s Selecting previously unselected package libnsl-dev:arm64. 221s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 221s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 221s Selecting previously unselected package rpcsvc-proto. 221s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 221s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 221s Selecting previously unselected package libc6-dev:arm64. 221s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 221s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 221s Selecting previously unselected package libisl23:arm64. 221s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 221s Unpacking libisl23:arm64 (0.26-3) ... 221s Selecting previously unselected package libmpc3:arm64. 221s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 221s Unpacking libmpc3:arm64 (1.3.1-1) ... 221s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 221s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package cpp-13. 221s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package cpp-aarch64-linux-gnu. 221s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package cpp. 221s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking cpp (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package libcc1-0:arm64. 221s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 221s Selecting previously unselected package libgomp1:arm64. 221s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 221s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libitm1:arm64. 222s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libatomic1:arm64. 222s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libasan8:arm64. 222s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package liblsan0:arm64. 222s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libtsan2:arm64. 222s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libubsan1:arm64. 222s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libhwasan0:arm64. 222s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libgcc-13-dev:arm64. 222s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 222s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 222s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gcc-13. 223s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gcc-aarch64-linux-gnu. 223s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package gcc. 223s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gcc (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package libstdc++-13-dev:arm64. 223s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package g++-13-aarch64-linux-gnu. 223s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package g++-13. 223s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking g++-13 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package g++-aarch64-linux-gnu. 223s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package g++. 223s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking g++ (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package build-essential. 224s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 224s Unpacking build-essential (12.10ubuntu1) ... 224s Selecting previously unselected package dctrl-tools. 224s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 224s Unpacking dctrl-tools (2.24-3build2) ... 224s Selecting previously unselected package fonts-dejavu-mono. 224s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 224s Unpacking fonts-dejavu-mono (2.37-8) ... 224s Selecting previously unselected package fonts-dejavu-core. 224s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 224s Unpacking fonts-dejavu-core (2.37-8) ... 224s Selecting previously unselected package fontconfig-config. 224s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 224s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 224s Selecting previously unselected package libfontconfig1:arm64. 224s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 224s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 224s Selecting previously unselected package fontconfig. 224s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 224s Unpacking fontconfig (2.15.0-1ubuntu1) ... 224s Selecting previously unselected package fonts-font-awesome. 224s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 224s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 224s Selecting previously unselected package fonts-glyphicons-halflings. 224s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 224s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 224s Selecting previously unselected package fonts-lmodern. 224s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 224s Unpacking fonts-lmodern (2.005-1) ... 224s Selecting previously unselected package fonts-mathjax. 225s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 225s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 225s Selecting previously unselected package libgfortran5:arm64. 225s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgfortran-13-dev:arm64. 225s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 225s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gfortran-13. 225s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gfortran-aarch64-linux-gnu. 225s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 225s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 225s Selecting previously unselected package gfortran. 225s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 225s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 225s Selecting previously unselected package icu-devtools. 225s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 225s Unpacking icu-devtools (74.2-1ubuntu1) ... 226s Selecting previously unselected package javascript-common. 226s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 226s Unpacking javascript-common (11+nmu1) ... 226s Selecting previously unselected package libio-string-perl. 226s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 226s Unpacking libio-string-perl (1.08-4) ... 226s Selecting previously unselected package liblatex-tounicode-perl. 226s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 226s Unpacking liblatex-tounicode-perl (0.54-2) ... 226s Selecting previously unselected package libbibtex-parser-perl. 226s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 226s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 226s Selecting previously unselected package libblas3:arm64. 226s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 226s Unpacking libblas3:arm64 (3.12.0-3) ... 226s Selecting previously unselected package libblas-dev:arm64. 226s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 226s Unpacking libblas-dev:arm64 (3.12.0-3) ... 226s Selecting previously unselected package libboost1.83-dev:arm64. 226s Preparing to unpack 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... 228s Unpacking libxcb-shm0:arm64 (1.15-1) ... 228s Selecting previously unselected package libxrender1:arm64. 228s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 228s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 228s Selecting previously unselected package libcairo2:arm64. 229s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 229s Unpacking libcairo2:arm64 (1.18.0-1) ... 229s Selecting previously unselected package libdatrie1:arm64. 229s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 229s Unpacking libdatrie1:arm64 (0.2.13-3) ... 229s Selecting previously unselected package libdeflate0:arm64. 229s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 229s Unpacking libdeflate0:arm64 (1.19-1) ... 229s Selecting previously unselected package libgraphite2-3:arm64. 229s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 229s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 229s Selecting previously unselected package libharfbuzz0b:arm64. 229s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 229s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 229s Selecting previously unselected package x11-common. 229s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 229s Unpacking x11-common (1:7.7+23ubuntu2) ... 229s Selecting previously unselected package libice6:arm64. 229s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 229s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 229s Selecting previously unselected package libicu-dev:arm64. 229s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 229s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 230s Selecting previously unselected package libjpeg-turbo8:arm64. 231s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 231s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 232s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 234s Preparing to unpack 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Unpacking libjs-popper.js (1.16.1+ds-6) ... 235s Selecting previously unselected package libjs-bootstrap4. 236s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 236s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 236s Selecting previously unselected package libjs-d3. 236s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 236s Unpacking libjs-d3 (3.5.17-4) ... 236s Selecting previously unselected package libjs-es5-shim. 236s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 236s Unpacking libjs-es5-shim (4.6.7-2) ... 236s Selecting previously unselected package libjs-highlight.js. 236s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 236s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 236s Selecting previously unselected package libjs-jquery. 236s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 236s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 236s Selecting previously unselected package libjs-jquery-datatables. 236s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 236s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 236s Selecting previously unselected package libjs-sifter.js. 236s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 236s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 236s Selecting previously unselected package libjs-microplugin.js. 236s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 236s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-selectize.js. 236s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 236s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-ui. 236s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 236s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 236s Selecting previously unselected package libjs-json. 236s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 236s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 236s Selecting previously unselected package libjs-lunr. 236s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 236s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 236s Selecting previously unselected package libjs-prettify. 236s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 236s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 237s Selecting previously unselected package libkpathsea6:arm64. 237s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 237s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 237s Selecting previously unselected package liblapack3:arm64. 237s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 237s Unpacking liblapack3:arm64 (3.12.0-3) ... 237s Selecting previously unselected package liblapack-dev:arm64. 237s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 237s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 237s Selecting previously unselected package liblerc4:arm64. 237s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 237s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 237s Selecting previously unselected package liblua5.4-0:arm64. 237s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 237s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 237s Selecting previously unselected package libncurses-dev:arm64. 237s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 237s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 237s Selecting previously unselected package libthai-data. 237s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 237s Unpacking libthai-data (0.1.29-2) ... 237s Selecting previously unselected package libthai0:arm64. 237s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 237s Unpacking libthai0:arm64 (0.1.29-2) ... 237s Selecting previously unselected package libpango-1.0-0:arm64. 237s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 237s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 237s Selecting previously unselected package libpangoft2-1.0-0:arm64. 237s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 237s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 237s Selecting previously unselected package libpangocairo-1.0-0:arm64. 238s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 238s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 238s Selecting previously unselected package libpaper1:arm64. 238s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 238s Unpacking libpaper1:arm64 (1.1.29) ... 238s Selecting previously unselected package libpaper-utils. 238s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 238s Unpacking libpaper-utils (1.1.29) ... 238s Selecting previously unselected package libpcre2-16-0:arm64. 238s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 238s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 238s Selecting previously unselected package libpcre2-32-0:arm64. 238s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 238s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 238s Selecting previously unselected package libpcre2-posix3:arm64. 238s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 238s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 238s Selecting previously unselected package libpcre2-dev:arm64. 238s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 238s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 238s Selecting previously unselected package libpkgconf3:arm64. 238s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 238s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 238s Selecting previously unselected package zlib1g-dev:arm64. 238s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 238s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 238s Selecting previously unselected package libpng-dev:arm64. 239s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 239s Unpacking libpng-dev:arm64 (1.6.43-3) ... 239s Selecting previously unselected package libpotrace0:arm64. 239s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 239s Unpacking libpotrace0:arm64 (1.16-2) ... 239s Selecting previously unselected package libptexenc1:arm64. 239s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 239s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 239s Selecting previously unselected package libreadline-dev:arm64. 239s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 239s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 239s Selecting previously unselected package libsharpyuv0:arm64. 239s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 239s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 239s Selecting previously unselected package libsm6:arm64. 239s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 239s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 239s Selecting previously unselected package libsynctex2:arm64. 239s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 239s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 239s Selecting previously unselected package libtcl8.6:arm64. 239s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 239s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 239s Selecting previously unselected package libteckit0:arm64. 239s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 239s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 239s Selecting previously unselected package libtexlua53-5:arm64. 239s Preparing to unpack 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libxss1:arm64 (1:1.2.3-1build2) ... 240s Selecting previously unselected package libtk8.6:arm64. 240s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 240s Unpacking libtk8.6:arm64 (8.6.13-2) ... 240s Selecting previously unselected package libxt6t64:arm64. 240s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 240s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 240s Selecting previously unselected package libxmu6:arm64. 240s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 240s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 240s Selecting previously unselected package libxpm4:arm64. 240s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 240s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 240s Selecting previously unselected package libxaw7:arm64. 240s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 240s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 240s Selecting previously unselected package libxi6:arm64. 240s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 240s Unpacking libxi6:arm64 (2:1.8.1-1) ... 240s Selecting previously unselected package libzzip-0-13:arm64. 240s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 240s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 240s Selecting previously unselected package node-bootstrap-sass. 240s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 240s Unpacking node-bootstrap-sass (3.4.3-2) ... 240s Selecting previously unselected package node-html5shiv. 240s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 240s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 240s Selecting previously unselected package node-normalize.css. 240s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 240s Unpacking node-normalize.css (8.0.1-5) ... 240s Selecting previously unselected package pandoc-data. 240s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 240s Unpacking pandoc-data (3.1.3-1) ... 240s Selecting previously unselected package pandoc. 240s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 240s Unpacking pandoc (3.1.3+ds-2) ... 241s Selecting previously unselected package pkgconf-bin. 241s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 241s Unpacking pkgconf-bin (1.8.1-2) ... 241s Selecting previously unselected package pkgconf:arm64. 241s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 241s Unpacking pkgconf:arm64 (1.8.1-2) ... 241s Selecting previously unselected package pkg-config:arm64. 241s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 242s Unpacking pkg-config:arm64 (1.8.1-2) ... 242s Selecting previously unselected package zip. 242s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 242s Unpacking zip (3.0-13) ... 242s Selecting previously unselected package unzip. 242s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 242s Unpacking unzip (6.0-28ubuntu3) ... 242s Selecting previously unselected package xdg-utils. 242s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 242s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 242s Selecting previously unselected package r-base-core. 242s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 242s Unpacking r-base-core (4.3.3-2build1) ... 242s Selecting previously unselected package liblzma-dev:arm64. 242s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 242s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 242s Selecting previously unselected package r-base-dev. 242s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 242s Unpacking r-base-dev (4.3.3-2build1) ... 242s Selecting previously unselected package pkg-r-autopkgtest. 242s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 242s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 242s Selecting previously unselected package r-bioc-biocgenerics. 243s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 243s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 243s Selecting previously unselected package r-bioc-biobase. 243s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 243s Unpacking r-bioc-biobase (2.62.0-1) ... 243s Selecting previously unselected package r-bioc-s4vectors. 243s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 243s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 243s Selecting previously unselected package r-bioc-biocio. 243s Preparing to unpack .../151-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 243s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-formatr. 243s Preparing to unpack .../152-r-cran-formatr_1.14-1_all.deb ... 243s Unpacking r-cran-formatr (1.14-1) ... 243s Selecting previously unselected package r-cran-lambda.r. 243s Preparing to unpack .../153-r-cran-lambda.r_1.2.4-2build1_all.deb ... 243s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 243s Selecting previously unselected package r-cran-futile.options. 244s Preparing to unpack .../154-r-cran-futile.options_1.0.1-3build1_all.deb ... 244s Unpacking r-cran-futile.options (1.0.1-3build1) ... 244s Selecting previously unselected package r-cran-futile.logger. 244s Preparing to unpack .../155-r-cran-futile.logger_1.4.3-4build1_all.deb ... 244s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 244s Selecting previously unselected package r-cran-snow. 244s Preparing to unpack .../156-r-cran-snow_1%3a0.4.4-2_all.deb ... 244s Unpacking r-cran-snow (1:0.4.4-2) ... 244s Selecting previously unselected package r-cran-codetools. 244s Preparing to unpack .../157-r-cran-codetools_0.2-19-1_all.deb ... 244s Unpacking r-cran-codetools (0.2-19-1) ... 244s Selecting previously unselected package r-cran-bh. 244s Preparing to unpack .../158-r-cran-bh_1.84.0-1_all.deb ... 244s Unpacking r-cran-bh (1.84.0-1) ... 244s Selecting previously unselected package r-cran-cpp11. 244s Preparing to unpack .../159-r-cran-cpp11_0.4.7-1_all.deb ... 244s Unpacking r-cran-cpp11 (0.4.7-1) ... 244s Selecting previously unselected package r-bioc-biocparallel. 244s Preparing to unpack .../160-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 244s Unpacking r-bioc-biocparallel (1.36.0-1) ... 244s Selecting previously unselected package r-cran-base64enc. 244s Preparing to unpack .../161-r-cran-base64enc_0.1-3-3_arm64.deb ... 244s Unpacking r-cran-base64enc (0.1-3-3) ... 244s Selecting previously unselected package r-cran-digest. 244s Preparing to unpack .../162-r-cran-digest_0.6.34-1_arm64.deb ... 244s Unpacking r-cran-digest (0.6.34-1) ... 244s Selecting previously unselected package r-cran-rlang. 244s Preparing to unpack .../163-r-cran-rlang_1.1.3-1_arm64.deb ... 244s Unpacking r-cran-rlang (1.1.3-1) ... 244s Selecting previously unselected package r-cran-ellipsis. 244s Preparing to unpack .../164-r-cran-ellipsis_0.3.2-2_arm64.deb ... 244s Unpacking r-cran-ellipsis (0.3.2-2) ... 244s Selecting previously unselected package r-cran-fastmap. 244s Preparing to unpack .../165-r-cran-fastmap_1.1.1-1_arm64.deb ... 244s Unpacking r-cran-fastmap (1.1.1-1) ... 244s Selecting previously unselected package r-cran-htmltools. 245s Preparing to unpack .../166-r-cran-htmltools_0.5.7-1_arm64.deb ... 245s Unpacking r-cran-htmltools (0.5.7-1) ... 245s Selecting previously unselected package r-cran-evaluate. 245s Preparing to unpack .../167-r-cran-evaluate_0.23-1_all.deb ... 245s Unpacking r-cran-evaluate (0.23-1) ... 245s Selecting previously unselected package r-cran-xfun. 245s Preparing to unpack .../168-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 245s Unpacking r-cran-xfun (0.41+dfsg-1) ... 245s Selecting previously unselected package r-cran-highr. 245s Preparing to unpack .../169-r-cran-highr_0.10+dfsg-1_all.deb ... 245s Unpacking r-cran-highr (0.10+dfsg-1) ... 245s Selecting previously unselected package r-cran-yaml. 245s Preparing to unpack .../170-r-cran-yaml_2.3.8-1_arm64.deb ... 245s Unpacking r-cran-yaml (2.3.8-1) ... 245s Selecting previously unselected package libjs-mathjax. 245s Preparing to unpack .../171-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 245s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 245s Selecting previously unselected package r-cran-knitr. 246s Preparing to unpack .../172-r-cran-knitr_1.45+dfsg-1_all.deb ... 246s Unpacking r-cran-knitr (1.45+dfsg-1) ... 246s Selecting previously unselected package r-cran-cachem. 246s Preparing to unpack .../173-r-cran-cachem_1.0.8-1_arm64.deb ... 246s Unpacking r-cran-cachem (1.0.8-1) ... 246s Selecting previously unselected package r-cran-jquerylib. 246s Preparing to unpack .../174-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 246s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 246s Selecting previously unselected package r-cran-jsonlite. 246s Preparing to unpack .../175-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 246s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 246s Selecting previously unselected package r-cran-cli. 246s Preparing to unpack .../176-r-cran-cli_3.6.2-1_arm64.deb ... 246s Unpacking r-cran-cli (3.6.2-1) ... 246s Selecting previously unselected package r-cran-glue. 246s Preparing to unpack .../177-r-cran-glue_1.7.0-1_arm64.deb ... 246s Unpacking r-cran-glue (1.7.0-1) ... 246s Selecting previously unselected package r-cran-lifecycle. 246s Preparing to unpack .../178-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 246s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 246s Selecting previously unselected package r-cran-memoise. 246s Preparing to unpack .../179-r-cran-memoise_2.0.1-1_all.deb ... 246s Unpacking r-cran-memoise (2.0.1-1) ... 246s Selecting previously unselected package r-cran-mime. 246s Preparing to unpack .../180-r-cran-mime_0.12-1_arm64.deb ... 246s Unpacking r-cran-mime (0.12-1) ... 246s Selecting previously unselected package r-cran-fs. 246s Preparing to unpack .../181-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 246s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 246s Selecting previously unselected package r-cran-r6. 246s Preparing to unpack .../182-r-cran-r6_2.5.1-1_all.deb ... 246s Unpacking r-cran-r6 (2.5.1-1) ... 246s Selecting previously unselected package r-cran-rappdirs. 246s Preparing to unpack .../183-r-cran-rappdirs_0.3.3-1_arm64.deb ... 246s Unpacking r-cran-rappdirs (0.3.3-1) ... 246s Selecting previously unselected package r-cran-sass. 246s Preparing to unpack .../184-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 246s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 246s Selecting previously unselected package r-cran-bslib. 246s Preparing to unpack .../185-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 246s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 247s Selecting previously unselected package r-cran-fontawesome. 247s Preparing to unpack .../186-r-cran-fontawesome_0.5.2-1_all.deb ... 247s Unpacking r-cran-fontawesome (0.5.2-1) ... 247s Selecting previously unselected package r-cran-magrittr. 247s Preparing to unpack .../187-r-cran-magrittr_2.0.3-1_arm64.deb ... 247s Unpacking r-cran-magrittr (2.0.3-1) ... 247s Selecting previously unselected package r-cran-stringi. 247s Preparing to unpack .../188-r-cran-stringi_1.8.3-1_arm64.deb ... 247s Unpacking r-cran-stringi (1.8.3-1) ... 247s Selecting previously unselected package r-cran-vctrs. 247s Preparing to unpack .../189-r-cran-vctrs_0.6.5-1_arm64.deb ... 247s Unpacking r-cran-vctrs (0.6.5-1) ... 247s Selecting previously unselected package r-cran-stringr. 247s Preparing to unpack .../190-r-cran-stringr_1.5.1-1_all.deb ... 247s Unpacking r-cran-stringr (1.5.1-1) ... 247s Selecting previously unselected package r-cran-tinytex. 247s Preparing to unpack .../191-r-cran-tinytex_0.49-1_all.deb ... 247s Unpacking r-cran-tinytex (0.49-1) ... 247s Selecting previously unselected package libjs-modernizr. 247s Preparing to unpack .../192-libjs-modernizr_2.6.2+ds1-5_all.deb ... 247s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 247s Selecting previously unselected package r-cran-littler. 247s Preparing to unpack .../193-r-cran-littler_0.3.19-1_arm64.deb ... 247s Unpacking r-cran-littler (0.3.19-1) ... 247s Selecting previously unselected package r-cran-pkgkitten. 247s Preparing to unpack .../194-r-cran-pkgkitten_0.2.3-1_all.deb ... 247s Unpacking r-cran-pkgkitten (0.2.3-1) ... 247s Selecting previously unselected package r-cran-rcpp. 247s Preparing to unpack .../195-r-cran-rcpp_1.0.12-1_arm64.deb ... 247s Unpacking r-cran-rcpp (1.0.12-1) ... 247s Selecting previously unselected package r-cran-later. 247s Preparing to unpack .../196-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 247s Unpacking r-cran-later (1.3.2+dfsg-1) ... 247s Selecting previously unselected package r-cran-promises. 247s Preparing to unpack .../197-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 247s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 247s Selecting previously unselected package r-cran-httpuv. 247s Preparing to unpack .../198-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 247s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 247s Selecting previously unselected package r-cran-xtable. 247s Preparing to unpack .../199-r-cran-xtable_1%3a1.8-4-2_all.deb ... 247s Unpacking r-cran-xtable (1:1.8-4-2) ... 248s Selecting previously unselected package r-cran-sourcetools. 248s Preparing to unpack .../200-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 248s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 248s Selecting previously unselected package r-cran-crayon. 248s Preparing to unpack .../201-r-cran-crayon_1.5.2-1_all.deb ... 248s Unpacking r-cran-crayon (1.5.2-1) ... 248s Selecting previously unselected package r-cran-withr. 248s Preparing to unpack .../202-r-cran-withr_2.5.0-1_all.deb ... 248s Unpacking r-cran-withr (2.5.0-1) ... 248s Selecting previously unselected package r-cran-commonmark. 248s Preparing to unpack .../203-r-cran-commonmark_1.9.1-1_arm64.deb ... 248s Unpacking r-cran-commonmark (1.9.1-1) ... 248s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 248s Preparing to unpack .../204-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 248s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 248s Selecting previously unselected package r-cran-shiny. 248s Preparing to unpack .../205-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 248s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-rmarkdown. 248s Preparing to unpack .../206-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 248s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 248s Selecting previously unselected package r-cran-bookdown. 248s Preparing to unpack .../207-r-cran-bookdown_0.37+dfsg-1_all.deb ... 248s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 248s Selecting previously unselected package r-cran-biocmanager. 248s Preparing to unpack .../208-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 248s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 248s Selecting previously unselected package tex-common. 249s Preparing to unpack .../209-tex-common_6.18_all.deb ... 249s Unpacking tex-common (6.18) ... 249s Selecting previously unselected package t1utils. 249s Preparing to unpack .../210-t1utils_1.41-4build2_arm64.deb ... 249s Unpacking t1utils (1.41-4build2) ... 249s Selecting previously unselected package texlive-binaries. 249s Preparing to unpack .../211-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 249s Unpacking texlive-binaries (2023.20230311.66589-9) ... 249s Selecting previously unselected package texlive-base. 249s Preparing to unpack .../212-texlive-base_2023.20240207-1_all.deb ... 249s Unpacking texlive-base (2023.20240207-1) ... 251s Selecting previously unselected package texlive-latex-base. 251s Preparing to unpack .../213-texlive-latex-base_2023.20240207-1_all.deb ... 251s Unpacking texlive-latex-base (2023.20240207-1) ... 251s Selecting previously unselected package texlive-bibtex-extra. 251s Preparing to unpack .../214-texlive-bibtex-extra_2023.20240207-1_all.deb ... 251s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 254s Selecting previously unselected package r-bioc-biocstyle. 254s Preparing to unpack .../215-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 254s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 254s Selecting previously unselected package r-bioc-iranges. 254s Preparing to unpack .../216-r-bioc-iranges_2.36.0-1_arm64.deb ... 254s Unpacking r-bioc-iranges (2.36.0-1) ... 255s Selecting previously unselected package r-bioc-zlibbioc. 255s Preparing to unpack .../217-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 255s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 255s Selecting previously unselected package r-bioc-xvector. 255s Preparing to unpack .../218-r-bioc-xvector_0.42.0-1_arm64.deb ... 255s Unpacking r-bioc-xvector (0.42.0-1) ... 255s Selecting previously unselected package r-cran-bitops. 255s Preparing to unpack .../219-r-cran-bitops_1.0-7-1_arm64.deb ... 255s Unpacking r-cran-bitops (1.0-7-1) ... 255s Selecting previously unselected package r-cran-rcurl. 255s Preparing to unpack .../220-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 255s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 255s Selecting previously unselected package r-bioc-genomeinfodbdata. 255s Preparing to unpack .../221-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 255s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 255s Selecting previously unselected package r-bioc-genomeinfodb. 255s Preparing to unpack .../222-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 255s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 255s Selecting previously unselected package r-bioc-biostrings. 255s Preparing to unpack .../223-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 255s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 255s Selecting previously unselected package r-bioc-genomicranges. 255s Preparing to unpack .../224-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 255s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 255s Selecting previously unselected package r-cran-xml. 255s Preparing to unpack .../225-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 255s Unpacking r-cran-xml (3.99-0.16.1-1) ... 255s Selecting previously unselected package r-bioc-rhtslib. 255s Preparing to unpack .../226-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 255s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 255s Selecting previously unselected package r-bioc-rsamtools. 255s Preparing to unpack .../227-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 255s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 255s Selecting previously unselected package r-cran-matrixstats. 256s Preparing to unpack .../228-r-cran-matrixstats_1.2.0-1_arm64.deb ... 256s Unpacking r-cran-matrixstats (1.2.0-1) ... 256s Selecting previously unselected package r-bioc-matrixgenerics. 256s Preparing to unpack .../229-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 256s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 256s Selecting previously unselected package r-cran-lattice. 256s Preparing to unpack .../230-r-cran-lattice_0.22-5-1_arm64.deb ... 256s Unpacking r-cran-lattice (0.22-5-1) ... 256s Selecting previously unselected package r-cran-matrix. 256s Preparing to unpack .../231-r-cran-matrix_1.6-5-1_arm64.deb ... 256s Unpacking r-cran-matrix (1.6-5-1) ... 256s Selecting previously unselected package r-cran-abind. 256s Preparing to unpack .../232-r-cran-abind_1.4-5-2_all.deb ... 256s Unpacking r-cran-abind (1.4-5-2) ... 256s Selecting previously unselected package r-bioc-s4arrays. 256s Preparing to unpack .../233-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 256s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 256s Selecting previously unselected package r-bioc-sparsearray. 256s Preparing to unpack .../234-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 256s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 256s Selecting previously unselected package r-bioc-delayedarray. 256s Preparing to unpack .../235-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 256s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 256s Selecting previously unselected package r-bioc-summarizedexperiment. 256s Preparing to unpack .../236-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 256s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 256s Selecting previously unselected package r-bioc-genomicalignments. 256s Preparing to unpack .../237-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 256s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 256s Selecting previously unselected package r-cran-rjson. 256s Preparing to unpack .../238-r-cran-rjson_0.2.21-1_arm64.deb ... 256s Unpacking r-cran-rjson (0.2.21-1) ... 256s Selecting previously unselected package r-cran-restfulr. 256s Preparing to unpack .../239-r-cran-restfulr_0.0.15-1_arm64.deb ... 256s Unpacking r-cran-restfulr (0.0.15-1) ... 257s Selecting previously unselected package r-bioc-rtracklayer. 257s Preparing to unpack .../240-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 257s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 257s Selecting previously unselected package r-bioc-bsgenome. 257s Preparing to unpack .../241-r-bioc-bsgenome_1.70.2-1_all.deb ... 257s Unpacking r-bioc-bsgenome (1.70.2-1) ... 257s Selecting previously unselected package r-bioc-seqlogo. 257s Preparing to unpack .../242-r-bioc-seqlogo_1.68.0+dfsg-1_all.deb ... 257s Unpacking r-bioc-seqlogo (1.68.0+dfsg-1) ... 257s Selecting previously unselected package r-cran-gtools. 257s Preparing to unpack .../243-r-cran-gtools_3.9.5-1_arm64.deb ... 257s Unpacking r-cran-gtools (3.9.5-1) ... 257s Selecting previously unselected package r-cran-gdata. 257s Preparing to unpack .../244-r-cran-gdata_3.0.0-1_all.deb ... 257s Unpacking r-cran-gdata (3.0.0-1) ... 257s Selecting previously unselected package r-cran-evd. 257s Preparing to unpack .../245-r-cran-evd_2.3-6.1-1_arm64.deb ... 257s Unpacking r-cran-evd (2.3-6.1-1) ... 257s Selecting previously unselected package r-bioc-pwmenrich. 257s Preparing to unpack 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(1.30.22+dfsg-2) ... 271s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 271s Setting up r-cran-fastmap (1.1.1-1) ... 271s Setting up r-bioc-biobase (2.62.0-1) ... 271s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 271s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 271s Setting up r-cran-utf8 (1.2.4-1) ... 271s Setting up r-cran-stringi (1.8.3-1) ... 271s Setting up texlive-latex-base (2023.20240207-1) ... 271s Setting up r-cran-cpp11 (0.4.7-1) ... 271s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 271s Setting up r-cran-futile.logger (1.4.3-4build1) ... 271s Setting up r-cran-later (1.3.2+dfsg-1) ... 271s Setting up r-cran-matrix (1.6-5-1) ... 271s Setting up r-cran-tinytex (0.49-1) ... 271s Setting up r-cran-knitr (1.45+dfsg-1) ... 271s Setting up g++ (4:13.2.0-7ubuntu1) ... 271s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 271s Setting up r-cran-cachem (1.0.8-1) ... 271s Setting up build-essential (12.10ubuntu1) ... 271s Setting up r-bioc-iranges (2.36.0-1) ... 271s Setting up r-cran-rjson (0.2.21-1) ... 271s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 271s Setting up r-bioc-seqlogo (1.68.0+dfsg-1) ... 271s Setting up r-cran-restfulr (0.0.15-1) ... 271s Setting up r-cran-gdata (3.0.0-1) ... 271s Setting up r-cran-vctrs (0.6.5-1) ... 271s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 271s Setting up r-cran-ellipsis (0.3.2-2) ... 271s Setting up r-base-dev (4.3.3-2build1) ... 271s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 271s Setting up r-cran-stringr (1.5.1-1) ... 271s Setting up r-bioc-biocparallel (1.36.0-1) ... 271s Setting up r-cran-callr (3.7.3-2) ... 271s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 271s Setting up r-cran-desc (1.4.3-1) ... 271s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 271s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 271s Setting up texlive-bibtex-extra (2023.20240207-1) ... 271s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 271s Setting up r-cran-memoise (2.0.1-1) ... 271s Setting up r-cran-promises (1.2.1+dfsg-1) ... 271s Setting up r-cran-htmltools (0.5.7-1) ... 271s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 271s Setting up r-bioc-xvector (0.42.0-1) ... 271s Setting up r-cran-pkgbuild (1.4.3-1) ... 271s Setting up r-cran-sass (0.4.8+dfsg-1) ... 271s Setting up r-cran-pkgload (1.3.4-1) ... 271s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 271s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 271s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 271s Setting up r-cran-rematch2 (2.1.2-2build1) ... 271s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 271s Setting up r-cran-fontawesome (0.5.2-1) ... 271s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 271s Setting up r-bioc-pwmenrich (4.38.0-1) ... 271s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 271s Setting up r-cran-waldo (0.5.2-1build1) ... 271s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 271s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 271s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 271s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 271s Setting up r-cran-testthat (3.2.1-1) ... 271s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 271s Setting up r-bioc-genomicalignments (1.38.2-1) ... 271s Setting up r-cran-bookdown (0.37+dfsg-1) ... 271s Setting up r-bioc-rtracklayer (1.62.0-1) ... 271s Setting up r-bioc-bsgenome (1.70.2-1) ... 271s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 271s Setting up autopkgtest-satdep (0) ... 271s Processing triggers for man-db (2.12.0-3) ... 272s Processing triggers for install-info (7.1-3) ... 273s Processing triggers for libc-bin (2.39-0ubuntu2) ... 273s Processing triggers for tex-common (6.18) ... 273s Running updmap-sys. This may take some time... done. 274s Running mktexlsr /var/lib/texmf ... done. 274s Building format(s) --all. 311s This may take some time... done. 329s (Reading database ... 123608 files and directories currently installed.) 329s Removing autopkgtest-satdep (0) ... 330s autopkgtest [17:45:57]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 330s autopkgtest [17:45:57]: test pkg-r-autopkgtest: [----------------------- 331s Test: Try to load the R library PWMEnrich 332s 332s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 332s Copyright (C) 2024 The R Foundation for Statistical Computing 332s Platform: aarch64-unknown-linux-gnu (64-bit) 332s 332s R is free software and comes with ABSOLUTELY NO WARRANTY. 332s You are welcome to redistribute it under certain conditions. 332s Type 'license()' or 'licence()' for distribution details. 332s 332s R is a collaborative project with many contributors. 332s Type 'contributors()' for more information and 332s 'citation()' on how to cite R or R packages in publications. 332s 332s Type 'demo()' for some demos, 'help()' for on-line help, or 332s 'help.start()' for an HTML browser interface to help. 332s Type 'q()' to quit R. 332s 332s > library('PWMEnrich') 332s Loading required package: BiocGenerics 332s 332s Attaching package: ‘BiocGenerics’ 332s 332s The following objects are masked from ‘package:stats’: 332s 332s IQR, mad, sd, var, xtabs 332s 332s The following objects are masked from ‘package:base’: 332s 332s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 332s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 332s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 332s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 332s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 332s table, tapply, union, unique, unsplit, which.max, which.min 332s 332s Loading required package: Biostrings 332s Loading required package: S4Vectors 332s Loading required package: stats4 333s 333s Attaching package: ‘S4Vectors’ 333s 333s The following object is masked from ‘package:utils’: 333s 333s findMatches 333s 333s The following objects are masked from ‘package:base’: 333s 333s expand.grid, I, unname 333s 333s Loading required package: IRanges 334s Loading required package: XVector 334s Loading required package: GenomeInfoDb 335s 335s Attaching package: ‘Biostrings’ 335s 335s The following object is masked from ‘package:base’: 335s 335s strsplit 335s 335s > 335s > 335s Other tests are currently unsupported! 335s They will be progressively added. 336s autopkgtest [17:46:03]: test pkg-r-autopkgtest: -----------------------] 336s autopkgtest [17:46:03]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 336s pkg-r-autopkgtest PASS 337s autopkgtest [17:46:04]: @@@@@@@@@@@@@@@@@@@@ summary 337s pkg-r-autopkgtest PASS 349s Creating nova instance adt-noble-arm64-r-bioc-pwmenrich-20240316-174027-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...