0s autopkgtest [17:40:13]: starting date and time: 2024-03-16 17:40:13+0000 0s autopkgtest [17:40:13]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:40:13]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.pw1swjc4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-8.secgroup --name adt-noble-arm64-r-bioc-purecn-20240316-174013-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 143s autopkgtest [17:42:36]: testbed dpkg architecture: arm64 143s autopkgtest [17:42:36]: testbed apt version: 2.7.12 143s autopkgtest [17:42:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup 143s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 144s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 144s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 144s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 144s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 144s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 144s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 144s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 144s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 144s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 144s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 144s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 144s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 147s Fetched 9060 kB in 2s (4646 kB/s) 147s Reading package lists... 156s Reading package lists... 156s Building dependency tree... 156s Reading state information... 157s Calculating upgrade... 157s The following packages will be REMOVED: 157s libglib2.0-0 libssl3 157s The following NEW packages will be installed: 157s libglib2.0-0t64 libssl3t64 xdg-user-dirs 157s The following packages have been kept back: 157s curl 157s The following packages will be upgraded: 157s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 157s ubuntu-minimal ubuntu-standard 157s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 157s Need to get 4613 kB of archives. 157s After this operation, 211 kB of additional disk space will be used. 157s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 158s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 158s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 158s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 158s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 158s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 158s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 158s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 158s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 158s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 159s Fetched 4613 kB in 1s (6826 kB/s) 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 159s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 159s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 159s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 159s udisks2 depends on libglib2.0-0 (>= 2.77.0). 159s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 159s python3-gi depends on libglib2.0-0 (>= 2.77.0). 159s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 159s netplan.io depends on libglib2.0-0 (>= 2.70.0). 159s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 159s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 159s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 159s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 159s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 159s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 159s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 159s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 159s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 159s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 159s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 159s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 159s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 159s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 159s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 159s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 159s fwupd depends on libglib2.0-0 (>= 2.79.0). 159s bolt depends on libglib2.0-0 (>= 2.56.0). 159s 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 159s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 159s Selecting previously unselected package libglib2.0-0t64:arm64. 159s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 159s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 159s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 159s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 159s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 159s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 159s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 160s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 160s wget depends on libssl3 (>= 3.0.0). 160s u-boot-tools depends on libssl3 (>= 3.0.0). 160s tnftp depends on libssl3 (>= 3.0.0). 160s tcpdump depends on libssl3 (>= 3.0.0). 160s systemd-resolved depends on libssl3 (>= 3.0.0). 160s systemd depends on libssl3 (>= 3.0.0). 160s sudo depends on libssl3 (>= 3.0.0). 160s sbsigntool depends on libssl3 (>= 3.0.0). 160s rsync depends on libssl3 (>= 3.0.0). 160s python3-cryptography depends on libssl3 (>= 3.0.0). 160s openssh-server depends on libssl3 (>= 3.0.10). 160s openssh-client depends on libssl3 (>= 3.0.10). 160s mtd-utils depends on libssl3 (>= 3.0.0). 160s mokutil depends on libssl3 (>= 3.0.0). 160s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 160s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 160s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 160s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 160s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 160s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 160s libnvme1 depends on libssl3 (>= 3.0.0). 160s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 160s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 160s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 160s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 160s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 160s kmod depends on libssl3 (>= 3.0.0). 160s dhcpcd-base depends on libssl3 (>= 3.0.0). 160s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 160s 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 160s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 160s Selecting previously unselected package libssl3t64:arm64. 160s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 160s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 160s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 160s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 160s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 160s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 160s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 160s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 160s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 160s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 160s Unpacking ubuntu-minimal (1.536) over (1.535) ... 160s Selecting previously unselected package xdg-user-dirs. 160s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 160s Unpacking xdg-user-dirs (0.18-1) ... 160s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 160s Unpacking ubuntu-standard (1.536) over (1.535) ... 160s Setting up ubuntu-minimal (1.536) ... 160s Setting up xdg-user-dirs (0.18-1) ... 160s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 160s Setting up libtirpc-common (1.3.4+ds-1.1) ... 160s Setting up ubuntu-standard (1.536) ... 160s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 160s No schema files found: doing nothing. 160s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 160s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 160s Setting up openssl (3.0.13-0ubuntu1) ... 160s Setting up readline-common (8.2-3.1) ... 160s Processing triggers for man-db (2.12.0-3) ... 161s Processing triggers for install-info (7.1-3) ... 161s Processing triggers for libc-bin (2.39-0ubuntu2) ... 162s Reading package lists... 162s Building dependency tree... 162s Reading state information... 163s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 163s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 163s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 164s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 164s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 165s Reading package lists... 165s Reading package lists... 165s Building dependency tree... 165s Reading state information... 166s Calculating upgrade... 167s The following packages have been kept back: 167s curl 167s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 167s Reading package lists... 167s Building dependency tree... 167s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 171s autopkgtest [17:43:04]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 171s autopkgtest [17:43:04]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 174s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 174s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 174s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 174s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 174s gpgv: issuer "tillea@rki.de" 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 176s autopkgtest [17:43:09]: testing package r-bioc-purecn version 2.8.1+dfsg-1 176s autopkgtest [17:43:09]: build not needed 178s autopkgtest [17:43:11]: test pkg-r-autopkgtest: preparing testbed 180s Reading package lists... 181s Building dependency tree... 181s Reading state information... 181s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s The following additional packages will be installed: 182s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 182s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 182s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 182s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 182s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 182s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 182s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 182s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 182s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 182s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 182s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 182s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 182s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 182s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 182s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 182s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 182s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 182s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 182s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 182s libjs-popper.js libjs-prettify libjs-sifter.js 182s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 182s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 182s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 182s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 182s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 182s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 182s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 182s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 182s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 182s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 182s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 182s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 182s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 182s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 182s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 182s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 182s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 182s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 182s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 182s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 182s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 182s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 182s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 182s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 182s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 182s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 182s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 182s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 182s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 182s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 182s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 182s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 182s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 182s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 182s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 182s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 182s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 182s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 182s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 182s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 182s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 182s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 182s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 182s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 182s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 182s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 182s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 182s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 182s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 182s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 182s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 182s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 182s xdg-utils zip zlib1g-dev 182s Suggested packages: 182s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 182s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 182s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 182s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 182s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 182s libboost-context1.83-dev libboost-contract1.83-dev 182s libboost-coroutine1.83-dev libboost-date-time1.83-dev 182s libboost-exception1.83-dev libboost-fiber1.83-dev 182s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 182s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 182s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 182s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 182s libboost-numpy1.83-dev libboost-program-options1.83-dev 182s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 182s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 182s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 182s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 182s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 182s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 182s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 182s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 182s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 182s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 182s librsvg2-bin groff ghc php python ruby libjs-katex 182s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 182s r-base-html texlive-plain-generic texlive-fonts-recommended 182s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-runit 182s r-bioc-graph r-cran-princurve r-bioc-all r-bioc-affy r-bioc-deseq2 182s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 182s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 182s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 182s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-bioc-gviz 182s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-cran-bench 182s r-cran-tinytest r-bioc-limma r-bioc-snpstats r-cran-roxygen2 r-cran-ff 182s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 182s r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql 182s r-cran-lubridate r-cran-magick r-cran-sf r-cran-geometry r-cran-formattable 182s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 182s r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-rmpi 182s r-cran-rlecuyer r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 182s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 182s hintview texlive-latex-base-doc wp2latex 182s Recommended packages: 182s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 182s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 182s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 182s r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic r-cran-cliapp 182s r-cran-mockery r-cran-whoami r-cran-dt r-cran-bench r-cran-decor 182s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-xts r-cran-nanotime 182s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql 182s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-rhpcblasctl r-cran-r.rsp 182s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 182s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 182s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-jpeg r-cran-readr 182s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 182s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 182s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 182s r-cran-pingr r-cran-foreign r-cran-nnet r-cran-runit r-cran-usethis 182s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 182s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 182s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 182s x11-xserver-utils 182s The following packages will be REMOVED: 182s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 182s The following NEW packages will be installed: 182s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 182s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 182s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 182s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 182s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 182s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 182s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 182s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 182s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 182s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 182s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 182s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 182s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 182s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 182s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 182s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 182s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 182s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 182s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 182s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 182s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 182s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 182s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 182s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 182s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 182s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 182s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 182s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 182s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 182s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 182s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 182s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 182s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 182s r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase r-bioc-biocfilecache 182s r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle 182s r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-delayedarray 182s r-bioc-dnacopy r-bioc-genomeinfodb r-bioc-genomeinfodbdata 182s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 182s r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-org.hs.eg.db 182s r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib 182s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 182s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 182s r-bioc-variantannotation r-bioc-xvector r-bioc-zlibbioc r-cran-abind 182s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 182s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio 182s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-codetools 182s r-cran-colorspace r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon 182s r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr r-cran-desc 182s r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 182s r-cran-fansi r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 182s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 182s r-cran-future r-cran-generics r-cran-getopt r-cran-ggplot2 r-cran-globals 182s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 182s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-isoband r-cran-jquerylib 182s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 182s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-listenv 182s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-mass r-cran-matrix 182s r-cran-matrixstats r-cran-mclust r-cran-memoise r-cran-mgcv r-cran-mime 182s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-optparse r-cran-parallelly 182s r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten 182s r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits 182s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs 182s r-cran-purrr r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils 182s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 182s r-cran-rematch2 r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang 182s r-cran-rmarkdown r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales 182s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr 182s r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect 182s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite 182s r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 182s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 182s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 182s xdg-utils zip zlib1g-dev 182s The following packages will be upgraded: 182s curl 182s 1 upgraded, 348 newly installed, 5 to remove and 0 not upgraded. 182s Need to get 550 MB/550 MB of archives. 182s After this operation, 1844 MB of additional disk space will be used. 182s Get:1 /tmp/autopkgtest.4e0jck/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [816 B] 182s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 183s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 183s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 183s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 183s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 183s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 183s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 183s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 183s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 183s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 183s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 183s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 183s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 183s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 183s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 183s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 183s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 183s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 183s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 183s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 183s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 183s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 183s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 183s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 183s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 183s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 184s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 184s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 184s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 184s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 184s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 184s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 184s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 184s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 184s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 184s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 184s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 184s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 184s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 184s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 184s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 184s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 184s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 184s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 184s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 184s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 184s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 185s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 185s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 185s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 185s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 185s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 185s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 185s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 185s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 185s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 185s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 185s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 185s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 185s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 185s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 185s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 185s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 185s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 185s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 185s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 185s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 185s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 185s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 185s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 185s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 185s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 185s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 185s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 185s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 185s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 185s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 185s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 185s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 185s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 186s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 186s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 186s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 186s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 186s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 186s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 186s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 186s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 186s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 186s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 186s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 186s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 186s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 186s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 186s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 186s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 186s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 186s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 186s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 186s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 186s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 187s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 187s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 187s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 187s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 187s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 187s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 187s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 187s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 187s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 187s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 187s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 187s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 187s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 187s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 187s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 187s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 187s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 187s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 187s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 187s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 187s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 187s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 187s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 187s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 187s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 187s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 187s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 187s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 187s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 187s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 187s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 187s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 187s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 187s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 187s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 187s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 187s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 187s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 187s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 187s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 187s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 187s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 187s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 187s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 187s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 187s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 187s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 187s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 187s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 187s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 187s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 187s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 187s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 187s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 187s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 187s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 188s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 188s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 188s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 188s Get:163 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 188s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 188s Get:165 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 188s Get:166 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 189s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 189s Get:168 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 189s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 189s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 189s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 189s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 189s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 189s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 189s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 189s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 189s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 189s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 189s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 189s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 189s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 189s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 189s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 189s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 189s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 189s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 189s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 189s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 189s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 189s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 189s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 189s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 189s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 189s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 189s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 189s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 189s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 189s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 189s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 189s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 189s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 189s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 189s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 190s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 190s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 190s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 191s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 191s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 191s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 191s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 191s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 191s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 191s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 191s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 191s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 191s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 191s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 191s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 191s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 191s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 191s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 191s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 191s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 191s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 191s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 191s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 191s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 191s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 191s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 191s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 191s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 191s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 191s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 191s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 191s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 191s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 191s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 191s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 191s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 192s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 192s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 192s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 192s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 192s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 192s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 192s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 192s Get:247 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 192s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 192s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 192s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 192s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 192s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 192s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 192s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 192s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 192s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 192s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 192s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 192s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 192s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 192s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 192s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 192s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 192s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 192s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 192s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 192s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 192s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 192s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 192s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 192s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 192s Get:272 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 192s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 193s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 193s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 193s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 196s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 196s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 196s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 196s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 196s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 196s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 196s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 196s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 196s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 196s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 196s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 196s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 196s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 196s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 196s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 196s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 196s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 197s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 197s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 197s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 197s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 197s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 197s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 197s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dnacopy arm64 1.76.0-1 [379 kB] 197s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 197s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 199s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 199s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 199s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 200s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 200s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 200s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 200s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 200s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 200s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 200s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 200s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 200s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 200s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 200s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 200s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 200s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 200s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vgam arm64 1.1-9-1 [7301 kB] 201s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mclust arm64 6.0.1-1 [3898 kB] 201s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 201s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 201s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 201s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 201s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 201s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 201s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 201s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 201s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 201s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 201s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 201s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 201s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 201s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 201s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 201s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 201s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 201s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-getopt all 1.20.4-1 [38.4 kB] 201s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 201s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-optparse all 1.7.4-1 [81.6 kB] 201s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 201s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 201s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 201s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 201s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.cache all 0.16.0-1 [113 kB] 201s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pscbs all 0.66.0-2 [4345 kB] 201s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 201s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 201s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 204s Preconfiguring packages ... 204s Fetched 550 MB in 19s (28.5 MB/s) 204s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 204s wget depends on libpsl5 (>= 0.16.0). 204s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 204s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 204s 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 204s Removing libpsl5:arm64 (0.21.2-1build1) ... 204s Selecting previously unselected package libpsl5t64:arm64. 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 204s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 204s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 204s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 204s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 204s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 204s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 205s Selecting previously unselected package libcurl4t64:arm64. 205s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 205s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 205s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 206s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 206s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 206s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 206s 207s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 207s Removing libpng16-16:arm64 (1.6.43-1) ... 207s Selecting previously unselected package libpng16-16t64:arm64. 208s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 208s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 208s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 209s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 209s parted depends on libreadline8 (>= 6.0). 209s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 209s gpgsm depends on libreadline8 (>= 6.0). 209s gpgconf depends on libreadline8 (>= 6.0). 209s gpg depends on libreadline8 (>= 6.0). 209s gawk depends on libreadline8 (>= 6.0). 209s fdisk depends on libreadline8 (>= 6.0). 209s 210s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 210s Removing libreadline8:arm64 (8.2-3) ... 211s Selecting previously unselected package libreadline8t64:arm64. 211s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 211s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 211s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 211s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 211s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 211s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 211s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 212s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 212s lsof depends on libtirpc3 (>= 1.0.2). 212s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 212s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 212s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 212s iproute2 depends on libtirpc3 (>= 1.0.2). 212s 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 212s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 212s Selecting previously unselected package libtirpc3t64:arm64. 212s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 212s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 212s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 212s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 212s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 212s Selecting previously unselected package libc-dev-bin. 212s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 212s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 212s Selecting previously unselected package linux-libc-dev:arm64. 212s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 212s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 212s Selecting previously unselected package libcrypt-dev:arm64. 212s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 212s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 212s Selecting previously unselected package libtirpc-dev:arm64. 212s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 212s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 212s Selecting previously unselected package libnsl-dev:arm64. 212s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 212s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 212s Selecting previously unselected package rpcsvc-proto. 213s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 213s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 213s Selecting previously unselected package libc6-dev:arm64. 213s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 213s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 213s Selecting previously unselected package libisl23:arm64. 213s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 213s Unpacking libisl23:arm64 (0.26-3) ... 213s Selecting previously unselected package libmpc3:arm64. 213s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 213s Unpacking libmpc3:arm64 (1.3.1-1) ... 213s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 213s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 213s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 213s Selecting previously unselected package cpp-13. 213s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 213s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 213s Selecting previously unselected package cpp-aarch64-linux-gnu. 214s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 214s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 214s Selecting previously unselected package cpp. 214s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 214s Unpacking cpp (4:13.2.0-7ubuntu1) ... 214s Selecting previously unselected package libcc1-0:arm64. 214s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libgomp1:arm64. 214s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libitm1:arm64. 214s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 214s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 214s Selecting previously unselected package libatomic1:arm64. 215s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libasan8:arm64. 215s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package liblsan0:arm64. 215s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libtsan2:arm64. 215s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libubsan1:arm64. 215s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 215s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 215s Selecting previously unselected package libhwasan0:arm64. 216s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 216s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 216s Selecting previously unselected package libgcc-13-dev:arm64. 216s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 216s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-13. 216s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package gcc-aarch64-linux-gnu. 216s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 216s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package gcc. 216s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 216s Unpacking gcc (4:13.2.0-7ubuntu1) ... 216s Selecting previously unselected package libstdc++-13-dev:arm64. 216s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 216s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 216s Selecting previously unselected package g++-13-aarch64-linux-gnu. 217s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-13. 217s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 217s Unpacking g++-13 (13.2.0-17ubuntu2) ... 217s Selecting previously unselected package g++-aarch64-linux-gnu. 217s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package g++. 217s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 217s Unpacking g++ (4:13.2.0-7ubuntu1) ... 217s Selecting previously unselected package build-essential. 217s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 217s Unpacking build-essential (12.10ubuntu1) ... 217s Selecting previously unselected package dctrl-tools. 217s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 217s Unpacking dctrl-tools (2.24-3build2) ... 217s Selecting previously unselected package fonts-dejavu-mono. 217s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-mono (2.37-8) ... 217s Selecting previously unselected package fonts-dejavu-core. 217s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 217s Unpacking fonts-dejavu-core (2.37-8) ... 217s Selecting previously unselected package fontconfig-config. 217s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 218s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package libfontconfig1:arm64. 218s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 218s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package fontconfig. 218s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 218s Unpacking fontconfig (2.15.0-1ubuntu1) ... 218s Selecting previously unselected package fonts-font-awesome. 218s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 218s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 218s Selecting previously unselected package fonts-glyphicons-halflings. 218s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 218s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 218s Selecting previously unselected package fonts-lmodern. 218s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 218s Unpacking fonts-lmodern (2.005-1) ... 218s Selecting previously unselected package fonts-mathjax. 218s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 218s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 218s Selecting previously unselected package libgfortran5:arm64. 218s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 218s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 218s Selecting previously unselected package libgfortran-13-dev:arm64. 218s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 218s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 218s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 218s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 218s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 219s Selecting previously unselected package gfortran-13. 219s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 219s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 219s Selecting previously unselected package gfortran-aarch64-linux-gnu. 219s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 219s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 219s Selecting previously unselected package gfortran. 219s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 219s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 219s Selecting previously unselected package hdf5-helpers. 219s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 219s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 219s Selecting previously unselected package icu-devtools. 219s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 219s Unpacking icu-devtools (74.2-1ubuntu1) ... 219s Selecting previously unselected package javascript-common. 219s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 219s Unpacking javascript-common (11+nmu1) ... 219s Selecting previously unselected package libaec0:arm64. 219s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 219s Unpacking libaec0:arm64 (1.1.2-1) ... 219s Selecting previously unselected package libio-string-perl. 219s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 219s Unpacking libio-string-perl (1.08-4) ... 219s Selecting previously unselected package liblatex-tounicode-perl. 219s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 219s Unpacking liblatex-tounicode-perl (0.54-2) ... 219s Selecting previously unselected package libbibtex-parser-perl. 219s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 219s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 219s Selecting previously unselected package libblas3:arm64. 219s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 219s Unpacking libblas3:arm64 (3.12.0-3) ... 219s Selecting previously unselected package libblas-dev:arm64. 219s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 219s Unpacking libblas-dev:arm64 (3.12.0-3) ... 219s Selecting previously unselected package libsnappy1v5:arm64. 219s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 219s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 219s Selecting previously unselected package libblosc1:arm64. 219s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 219s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 219s Selecting previously unselected package libboost1.83-dev:arm64. 219s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 219s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 221s Selecting previously unselected package libboost-dev:arm64. 221s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 221s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 221s Selecting previously unselected package libbz2-dev:arm64. 221s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 221s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 221s Selecting previously unselected package libpixman-1-0:arm64. 221s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 221s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 221s Selecting previously unselected package libxcb-render0:arm64. 221s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 221s Unpacking libxcb-render0:arm64 (1.15-1) ... 221s Selecting previously unselected package libxcb-shm0:arm64. 221s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 221s Unpacking libxcb-shm0:arm64 (1.15-1) ... 221s Selecting previously unselected package libxrender1:arm64. 222s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 222s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 222s Selecting previously unselected package libcairo2:arm64. 222s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 222s Unpacking libcairo2:arm64 (1.18.0-1) ... 222s Selecting previously unselected package libcurl4-openssl-dev:arm64. 222s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 222s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 222s Selecting previously unselected package libdatrie1:arm64. 222s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 222s Unpacking libdatrie1:arm64 (0.2.13-3) ... 222s Selecting previously unselected package libdeflate0:arm64. 222s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 222s Unpacking libdeflate0:arm64 (1.19-1) ... 222s Selecting previously unselected package libgraphite2-3:arm64. 222s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 222s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 222s Selecting previously unselected package libharfbuzz0b:arm64. 222s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 222s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 222s Selecting previously unselected package libsz2:arm64. 222s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 222s Unpacking libsz2:arm64 (1.1.2-1) ... 222s Selecting previously unselected package libhdf5-103-1:arm64. 222s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 222s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 222s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 222s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 222s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 222s Selecting previously unselected package libhdf5-fortran-102:arm64. 222s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 222s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 222s Selecting previously unselected package libhdf5-hl-100:arm64. 222s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 222s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 222s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 223s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 223s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 223s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 223s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 223s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 223s Selecting previously unselected package zlib1g-dev:arm64. 223s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 223s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 223s Selecting previously unselected package libjpeg-turbo8:arm64. 223s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 223s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 223s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 224s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 224s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 224s Selecting previously unselected package libjpeg8:arm64. 224s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 224s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 224s Selecting previously unselected package libjpeg8-dev:arm64. 224s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 224s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 224s Selecting previously unselected package libjpeg-dev:arm64. 224s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 224s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 224s Selecting previously unselected package libaec-dev:arm64. 224s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 224s Unpacking libaec-dev:arm64 (1.1.2-1) ... 224s Selecting previously unselected package libssl-dev:arm64. 224s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 224s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 224s Selecting previously unselected package libhdf5-dev. 224s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 224s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 224s Selecting previously unselected package x11-common. 224s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 224s Unpacking x11-common (1:7.7+23ubuntu2) ... 224s Selecting previously unselected package libice6:arm64. 225s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 225s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 225s Selecting previously unselected package libicu-dev:arm64. 225s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 225s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 225s Selecting previously unselected package libjs-bootstrap. 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libjs-highlight.js (9.18.5+dfsg1-2) ... 226s Selecting previously unselected package libjs-jquery. 226s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 226s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 226s Selecting previously unselected package libjs-jquery-datatables. 226s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 226s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 226s Selecting previously unselected package libjs-sifter.js. 226s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 226s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 226s Selecting previously unselected package libjs-microplugin.js. 226s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 226s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 226s Selecting previously unselected package libjs-jquery-selectize.js. 226s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 226s 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(2023.20230311.66589-9) ... 226s Selecting previously unselected package liblapack3:arm64. 227s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 227s Unpacking liblapack3:arm64 (3.12.0-3) ... 227s Selecting previously unselected package liblapack-dev:arm64. 227s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 227s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 227s Selecting previously unselected package liblerc4:arm64. 227s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 227s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 227s Selecting previously unselected package liblua5.4-0:arm64. 227s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 227s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 227s Selecting previously unselected package libncurses-dev:arm64. 227s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 227s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 227s Selecting previously unselected package libthai-data. 227s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 227s Unpacking libthai-data (0.1.29-2) ... 227s Selecting previously unselected package libthai0:arm64. 227s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 227s Unpacking libthai0:arm64 (0.1.29-2) ... 227s Selecting previously unselected package libpango-1.0-0:arm64. 228s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 228s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 228s Selecting previously unselected package libpangoft2-1.0-0:arm64. 228s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 228s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 228s Selecting previously unselected package libpangocairo-1.0-0:arm64. 228s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 228s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 228s Selecting previously unselected package libpaper1:arm64. 228s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 228s Unpacking libpaper1:arm64 (1.1.29) ... 228s Selecting previously unselected package libpaper-utils. 228s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 228s Unpacking libpaper-utils (1.1.29) ... 228s Selecting previously unselected package libpcre2-16-0:arm64. 228s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 228s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 228s Selecting previously unselected package libpcre2-32-0:arm64. 228s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 228s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 228s Selecting previously unselected package libpcre2-posix3:arm64. 228s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 228s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 228s Selecting previously unselected package libpcre2-dev:arm64. 228s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 228s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 228s Selecting previously unselected package libpkgconf3:arm64. 228s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 228s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 228s Selecting previously unselected package libpng-dev:arm64. 228s Preparing to unpack .../126-libpng-dev_1.6.43-3_arm64.deb ... 228s Unpacking libpng-dev:arm64 (1.6.43-3) ... 228s Selecting previously unselected package libpotrace0:arm64. 228s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 228s Unpacking libpotrace0:arm64 (1.16-2) ... 228s Selecting previously unselected package libptexenc1:arm64. 228s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 228s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 228s Selecting previously unselected package libreadline-dev:arm64. 228s Preparing to unpack .../129-libreadline-dev_8.2-3.1_arm64.deb ... 228s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 228s Selecting previously unselected package libsharpyuv0:arm64. 228s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 228s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 229s Selecting previously unselected package libsm6:arm64. 229s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 229s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 229s Selecting previously unselected package libsynctex2:arm64. 229s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 229s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 229s Selecting previously unselected package libtcl8.6:arm64. 229s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 229s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 229s Selecting previously unselected package libteckit0:arm64. 229s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 229s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 229s Selecting previously unselected package libtexlua53-5:arm64. 230s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 230s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 230s Selecting previously unselected package libjbig0:arm64. 230s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 230s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 230s Selecting previously unselected package libwebp7:arm64. 230s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 230s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 230s Selecting previously unselected package libtiff6:arm64. 230s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 230s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 230s Selecting previously unselected package libxft2:arm64. 230s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 230s Unpacking libxft2:arm64 (2.3.6-1) ... 230s Selecting previously unselected package libxss1:arm64. 230s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 230s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 230s Selecting previously unselected package libtk8.6:arm64. 230s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 230s Unpacking libtk8.6:arm64 (8.6.13-2) ... 230s Selecting previously unselected package libxt6t64:arm64. 230s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 230s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 230s Selecting previously unselected package libxmu6:arm64. 230s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 230s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 230s Selecting previously unselected package libxpm4:arm64. 230s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 230s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 230s Selecting previously unselected package libxaw7:arm64. 230s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 230s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 230s Selecting previously unselected package libxi6:arm64. 230s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 230s Unpacking libxi6:arm64 (2:1.8.1-1) ... 230s Selecting previously unselected package libzzip-0-13:arm64. 230s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 230s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 230s Selecting previously unselected package node-bootstrap-sass. 231s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 231s Unpacking node-bootstrap-sass (3.4.3-2) ... 231s Selecting previously unselected package node-html5shiv. 232s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 232s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 232s Selecting previously unselected package node-normalize.css. 234s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 234s Unpacking node-normalize.css (8.0.1-5) ... 234s Selecting previously unselected package pandoc-data. 234s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 234s Unpacking pandoc-data (3.1.3-1) ... 234s Selecting previously unselected package pandoc. 234s Preparing to unpack .../152-pandoc_3.1.3+ds-2_arm64.deb ... 234s Unpacking pandoc (3.1.3+ds-2) ... 235s Selecting previously unselected package pkgconf-bin. 235s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_arm64.deb ... 235s Unpacking pkgconf-bin (1.8.1-2) ... 235s Selecting previously unselected package pkgconf:arm64. 235s Preparing to unpack .../154-pkgconf_1.8.1-2_arm64.deb ... 235s Unpacking pkgconf:arm64 (1.8.1-2) ... 235s Selecting previously unselected package pkg-config:arm64. 235s Preparing to unpack .../155-pkg-config_1.8.1-2_arm64.deb ... 235s Unpacking pkg-config:arm64 (1.8.1-2) ... 236s Selecting previously unselected package zip. 236s Preparing to unpack .../156-zip_3.0-13_arm64.deb ... 236s Unpacking zip (3.0-13) ... 236s Selecting previously unselected package unzip. 236s Preparing to unpack .../157-unzip_6.0-28ubuntu3_arm64.deb ... 236s Unpacking unzip (6.0-28ubuntu3) ... 236s Selecting previously unselected package xdg-utils. 236s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 236s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 236s Selecting previously unselected package r-base-core. 236s Preparing to unpack .../159-r-base-core_4.3.3-2build1_arm64.deb ... 236s Unpacking r-base-core (4.3.3-2build1) ... 236s Selecting previously unselected package liblzma-dev:arm64. 236s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_arm64.deb ... 236s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 236s Selecting previously unselected package r-base-dev. 237s Preparing to unpack .../161-r-base-dev_4.3.3-2build1_all.deb ... 237s Unpacking r-base-dev (4.3.3-2build1) ... 237s Selecting previously unselected package pkg-r-autopkgtest. 237s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 237s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 237s Selecting previously unselected package r-bioc-biocgenerics. 237s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 237s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 237s Selecting previously unselected package r-bioc-biobase. 237s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_arm64.deb ... 237s Unpacking r-bioc-biobase (2.62.0-1) ... 237s Selecting previously unselected package r-bioc-s4vectors. 237s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 237s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 237s Selecting previously unselected package r-bioc-iranges. 237s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_arm64.deb ... 237s Unpacking r-bioc-iranges (2.36.0-1) ... 237s Selecting previously unselected package r-cran-dbi. 237s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 237s Unpacking r-cran-dbi (1.2.2-1) ... 237s Selecting previously unselected package r-cran-bit. 237s Preparing to unpack .../168-r-cran-bit_4.0.5-1_arm64.deb ... 237s Unpacking r-cran-bit (4.0.5-1) ... 237s Selecting previously unselected package r-cran-bit64. 237s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_arm64.deb ... 237s Unpacking r-cran-bit64 (4.0.5-1) ... 237s Selecting previously unselected package r-cran-rlang. 237s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_arm64.deb ... 237s Unpacking r-cran-rlang (1.1.3-1) ... 237s Selecting previously unselected package r-cran-cli. 238s Preparing to unpack .../171-r-cran-cli_3.6.2-1_arm64.deb ... 238s Unpacking r-cran-cli (3.6.2-1) ... 238s Selecting previously unselected package r-cran-glue. 238s Preparing to unpack .../172-r-cran-glue_1.7.0-1_arm64.deb ... 238s Unpacking r-cran-glue (1.7.0-1) ... 238s Selecting previously unselected package r-cran-lifecycle. 238s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 238s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 238s Selecting previously unselected package r-cran-vctrs. 238s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_arm64.deb ... 238s Unpacking r-cran-vctrs (0.6.5-1) ... 238s Selecting previously unselected package r-cran-blob. 238s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 238s Unpacking r-cran-blob (1.2.4-1) ... 238s Selecting previously unselected package r-cran-fastmap. 238s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_arm64.deb ... 238s Unpacking r-cran-fastmap (1.1.1-1) ... 238s Selecting previously unselected package r-cran-cachem. 238s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_arm64.deb ... 238s Unpacking r-cran-cachem (1.0.8-1) ... 238s Selecting previously unselected package r-cran-memoise. 238s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 238s Unpacking r-cran-memoise (2.0.1-1) ... 238s Selecting previously unselected package r-cran-pkgconfig. 238s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 238s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 238s Selecting previously unselected package r-cran-plogr. 238s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 238s Unpacking r-cran-plogr (0.2.0-3build1) ... 238s Selecting previously unselected package r-cran-cpp11. 238s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 238s Unpacking r-cran-cpp11 (0.4.7-1) ... 238s Selecting previously unselected package r-cran-rsqlite. 239s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_arm64.deb ... 239s Unpacking r-cran-rsqlite (2.3.4-1) ... 239s Selecting previously unselected package r-cran-curl. 239s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 239s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 239s Selecting previously unselected package r-cran-jsonlite. 239s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 239s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 239s Selecting previously unselected package r-cran-mime. 239s Preparing to unpack .../185-r-cran-mime_0.12-1_arm64.deb ... 239s Unpacking r-cran-mime (0.12-1) ... 239s Selecting previously unselected package r-cran-sys. 239s Preparing to unpack .../186-r-cran-sys_3.4.2-1_arm64.deb ... 239s Unpacking r-cran-sys (3.4.2-1) ... 239s Selecting previously unselected package r-cran-askpass. 239s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_arm64.deb ... 239s Unpacking r-cran-askpass (1.2.0-1) ... 239s Selecting previously unselected package r-cran-openssl. 239s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 239s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 239s Selecting previously unselected package r-cran-r6. 239s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 239s Unpacking r-cran-r6 (2.5.1-1) ... 239s Selecting previously unselected package r-cran-httr. 239s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 239s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 239s Selecting previously unselected package r-cran-png. 239s Preparing to unpack .../191-r-cran-png_0.1-8-1_arm64.deb ... 239s Unpacking r-cran-png (0.1-8-1) ... 240s Selecting previously unselected package r-bioc-zlibbioc. 240s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 240s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 240s Selecting previously unselected package r-bioc-xvector. 240s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_arm64.deb ... 240s Unpacking r-bioc-xvector (0.42.0-1) ... 240s Selecting previously unselected package r-cran-bitops. 240s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_arm64.deb ... 240s Unpacking r-cran-bitops (1.0-7-1) ... 240s Selecting previously unselected package r-cran-rcurl. 240s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 240s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 240s Selecting previously unselected package r-bioc-genomeinfodbdata. 240s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 240s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 240s Selecting previously unselected package r-bioc-genomeinfodb. 240s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 240s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 240s Selecting previously unselected package r-cran-crayon. 240s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 240s Unpacking r-cran-crayon (1.5.2-1) ... 240s Selecting previously unselected package r-bioc-biostrings. 240s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 240s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 241s Selecting previously unselected package r-bioc-keggrest. 241s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 241s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 241s Selecting previously unselected package r-bioc-annotationdbi. 241s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 241s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 241s Selecting previously unselected package r-cran-r.methodss3. 241s Preparing to unpack .../202-r-cran-r.methodss3_1.8.2-1_all.deb ... 241s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 241s Selecting previously unselected package r-cran-r.oo. 241s Preparing to unpack .../203-r-cran-r.oo_1.26.0-1_all.deb ... 241s Unpacking r-cran-r.oo (1.26.0-1) ... 241s Selecting previously unselected package r-cran-r.utils. 241s Preparing to unpack .../204-r-cran-r.utils_2.12.3-1_all.deb ... 241s Unpacking r-cran-r.utils (2.12.3-1) ... 241s Selecting previously unselected package r-cran-matrixstats. 241s Preparing to unpack .../205-r-cran-matrixstats_1.2.0-1_arm64.deb ... 241s Unpacking r-cran-matrixstats (1.2.0-1) ... 241s Selecting previously unselected package r-bioc-aroma.light. 241s Preparing to unpack .../206-r-bioc-aroma.light_3.32.0-1_all.deb ... 241s Unpacking r-bioc-aroma.light (3.32.0-1) ... 241s Selecting previously unselected package r-cran-generics. 241s Preparing to unpack .../207-r-cran-generics_0.1.3-1_all.deb ... 241s Unpacking r-cran-generics (0.1.3-1) ... 241s Selecting previously unselected package r-cran-magrittr. 242s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_arm64.deb ... 242s Unpacking r-cran-magrittr (2.0.3-1) ... 242s Selecting previously unselected package r-cran-fansi. 242s Preparing to unpack .../209-r-cran-fansi_1.0.5-1_arm64.deb ... 242s Unpacking r-cran-fansi (1.0.5-1) ... 242s Selecting previously unselected package r-cran-utf8. 242s Preparing to unpack .../210-r-cran-utf8_1.2.4-1_arm64.deb ... 242s Unpacking r-cran-utf8 (1.2.4-1) ... 242s Selecting previously unselected package r-cran-pillar. 242s Preparing to unpack .../211-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 242s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 242s Selecting previously unselected package r-cran-tibble. 242s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 242s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 242s Selecting previously unselected package r-cran-withr. 242s Preparing to unpack .../213-r-cran-withr_2.5.0-1_all.deb ... 242s Unpacking r-cran-withr (2.5.0-1) ... 242s Selecting previously unselected package r-cran-tidyselect. 242s Preparing to unpack .../214-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 242s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 242s Selecting previously unselected package r-cran-dplyr. 242s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_arm64.deb ... 242s Unpacking r-cran-dplyr (1.1.4-1) ... 242s Selecting previously unselected package r-cran-purrr. 242s Preparing to unpack .../216-r-cran-purrr_1.0.2-1_arm64.deb ... 242s Unpacking r-cran-purrr (1.0.2-1) ... 242s Selecting previously unselected package r-cran-stringi. 242s Preparing to unpack .../217-r-cran-stringi_1.8.3-1_arm64.deb ... 242s Unpacking r-cran-stringi (1.8.3-1) ... 242s Selecting previously unselected package r-cran-stringr. 242s Preparing to unpack .../218-r-cran-stringr_1.5.1-1_all.deb ... 242s Unpacking r-cran-stringr (1.5.1-1) ... 242s Selecting previously unselected package r-cran-tidyr. 242s Preparing to unpack .../219-r-cran-tidyr_1.3.1-1_arm64.deb ... 242s Unpacking r-cran-tidyr (1.3.1-1) ... 242s Selecting previously unselected package r-cran-dbplyr. 242s Preparing to unpack .../220-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 242s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-filelock. 243s Preparing to unpack .../221-r-cran-filelock_1.0.3-1_arm64.deb ... 243s Unpacking r-cran-filelock (1.0.3-1) ... 243s Selecting previously unselected package r-bioc-biocfilecache. 243s Preparing to unpack .../222-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 243s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 243s Selecting previously unselected package r-bioc-biocio. 243s Preparing to unpack .../223-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 243s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 243s Selecting previously unselected package r-cran-formatr. 243s Preparing to unpack .../224-r-cran-formatr_1.14-1_all.deb ... 243s Unpacking r-cran-formatr (1.14-1) ... 243s Selecting previously unselected package r-cran-lambda.r. 243s Preparing to unpack .../225-r-cran-lambda.r_1.2.4-2build1_all.deb ... 243s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 243s Selecting previously unselected package r-cran-futile.options. 243s Preparing to unpack .../226-r-cran-futile.options_1.0.1-3build1_all.deb ... 243s Unpacking r-cran-futile.options (1.0.1-3build1) ... 243s Selecting previously unselected package r-cran-futile.logger. 243s Preparing to unpack .../227-r-cran-futile.logger_1.4.3-4build1_all.deb ... 243s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 243s Selecting previously unselected package r-cran-snow. 243s Preparing to unpack .../228-r-cran-snow_1%3a0.4.4-2_all.deb ... 243s Unpacking r-cran-snow (1:0.4.4-2) ... 243s Selecting previously unselected package r-cran-codetools. 245s Preparing to unpack .../229-r-cran-codetools_0.2-19-1_all.deb ... 245s Unpacking r-cran-codetools (0.2-19-1) ... 246s Selecting previously unselected package r-cran-bh. 248s Preparing to unpack .../230-r-cran-bh_1.84.0-1_all.deb ... 248s Unpacking r-cran-bh (1.84.0-1) ... 248s Selecting previously unselected package r-bioc-biocparallel. 249s Preparing to unpack .../231-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 249s Unpacking r-bioc-biocparallel (1.36.0-1) ... 249s Selecting previously unselected package r-cran-base64enc. 249s Preparing to unpack .../232-r-cran-base64enc_0.1-3-3_arm64.deb ... 249s Unpacking r-cran-base64enc (0.1-3-3) ... 249s Selecting previously unselected package r-cran-digest. 249s Preparing to unpack .../233-r-cran-digest_0.6.34-1_arm64.deb ... 249s Unpacking r-cran-digest (0.6.34-1) ... 249s Selecting previously unselected package r-cran-ellipsis. 249s Preparing to unpack .../234-r-cran-ellipsis_0.3.2-2_arm64.deb ... 249s Unpacking r-cran-ellipsis (0.3.2-2) ... 249s Selecting previously unselected package r-cran-htmltools. 249s Preparing to unpack .../235-r-cran-htmltools_0.5.7-1_arm64.deb ... 249s Unpacking r-cran-htmltools (0.5.7-1) ... 250s Selecting previously unselected package r-cran-evaluate. 250s Preparing to unpack .../236-r-cran-evaluate_0.23-1_all.deb ... 250s Unpacking r-cran-evaluate (0.23-1) ... 250s Selecting previously unselected package r-cran-xfun. 250s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 250s Unpacking r-cran-xfun (0.41+dfsg-1) ... 250s Selecting previously unselected package r-cran-highr. 250s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 250s Unpacking r-cran-highr (0.10+dfsg-1) ... 250s Selecting previously unselected package r-cran-yaml. 250s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_arm64.deb ... 250s Unpacking r-cran-yaml (2.3.8-1) ... 250s Selecting previously unselected package libjs-mathjax. 250s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 250s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 251s Selecting previously unselected package r-cran-knitr. 251s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 251s Unpacking r-cran-knitr (1.45+dfsg-1) ... 251s Selecting previously unselected package r-cran-jquerylib. 251s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 251s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 251s Selecting previously unselected package r-cran-fs. 251s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 251s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 251s Selecting previously unselected package r-cran-rappdirs. 251s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_arm64.deb ... 251s Unpacking r-cran-rappdirs (0.3.3-1) ... 251s Selecting previously unselected package r-cran-sass. 251s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 251s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 251s Selecting previously unselected package r-cran-bslib. 251s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 251s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 251s Selecting previously unselected package r-cran-fontawesome. 251s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 251s Unpacking r-cran-fontawesome (0.5.2-1) ... 251s Selecting previously unselected package r-cran-tinytex. 252s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 252s Unpacking r-cran-tinytex (0.49-1) ... 252s Selecting previously unselected package libjs-modernizr. 252s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 252s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 252s Selecting previously unselected package r-cran-littler. 252s Preparing to unpack .../250-r-cran-littler_0.3.19-1_arm64.deb ... 252s Unpacking r-cran-littler (0.3.19-1) ... 252s Selecting previously unselected package r-cran-pkgkitten. 252s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 252s Unpacking r-cran-pkgkitten (0.2.3-1) ... 252s Selecting previously unselected package r-cran-rcpp. 252s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_arm64.deb ... 252s Unpacking r-cran-rcpp (1.0.12-1) ... 253s Selecting previously unselected package r-cran-later. 253s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 253s Unpacking r-cran-later (1.3.2+dfsg-1) ... 253s Selecting previously unselected package r-cran-promises. 253s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 253s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 253s Selecting previously unselected package r-cran-httpuv. 253s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 253s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 253s Selecting previously unselected package r-cran-xtable. 253s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 253s Unpacking r-cran-xtable (1:1.8-4-2) ... 253s Selecting previously unselected package r-cran-sourcetools. 253s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 253s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 253s Selecting previously unselected package r-cran-commonmark. 253s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_arm64.deb ... 253s Unpacking r-cran-commonmark (1.9.1-1) ... 253s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 253s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 253s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 253s Selecting previously unselected package r-cran-shiny. 253s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 253s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 254s Selecting previously unselected package r-cran-rmarkdown. 254s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 254s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 254s Selecting previously unselected package r-cran-bookdown. 254s Preparing to unpack .../262-r-cran-bookdown_0.37+dfsg-1_all.deb ... 254s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 254s Selecting previously unselected package r-cran-biocmanager. 254s Preparing to unpack .../263-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 254s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 254s Selecting previously unselected package tex-common. 254s Preparing to unpack .../264-tex-common_6.18_all.deb ... 254s Unpacking tex-common (6.18) ... 254s Selecting previously unselected package t1utils. 254s Preparing to unpack .../265-t1utils_1.41-4build2_arm64.deb ... 254s Unpacking t1utils (1.41-4build2) ... 254s Selecting previously unselected package texlive-binaries. 254s Preparing to unpack .../266-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 254s Unpacking texlive-binaries (2023.20230311.66589-9) ... 254s Selecting previously unselected package texlive-base. 254s Preparing to unpack .../267-texlive-base_2023.20240207-1_all.deb ... 254s Unpacking texlive-base (2023.20240207-1) ... 255s Selecting previously unselected package texlive-latex-base. 255s Preparing to unpack .../268-texlive-latex-base_2023.20240207-1_all.deb ... 255s Unpacking texlive-latex-base (2023.20240207-1) ... 256s Selecting previously unselected package texlive-bibtex-extra. 256s Preparing to unpack .../269-texlive-bibtex-extra_2023.20240207-1_all.deb ... 256s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 259s Selecting previously unselected package r-bioc-biocstyle. 259s Preparing to unpack .../270-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-xml. 259s Preparing to unpack .../271-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 259s Unpacking r-cran-xml (3.99-0.16.1-1) ... 259s Selecting previously unselected package r-cran-hms. 259s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 259s Unpacking r-cran-hms (1.1.3-1) ... 259s Selecting previously unselected package r-cran-prettyunits. 259s Preparing to unpack .../273-r-cran-prettyunits_1.2.0-1_all.deb ... 259s Unpacking r-cran-prettyunits (1.2.0-1) ... 259s Selecting previously unselected package r-cran-progress. 259s Preparing to unpack .../274-r-cran-progress_1.2.3-1_all.deb ... 259s Unpacking r-cran-progress (1.2.3-1) ... 259s Selecting previously unselected package r-cran-xml2. 259s Preparing to unpack .../275-r-cran-xml2_1.3.6-1_arm64.deb ... 259s Unpacking r-cran-xml2 (1.3.6-1) ... 259s Selecting previously unselected package r-bioc-biomart. 259s Preparing to unpack .../276-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 259s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 259s Selecting previously unselected package r-bioc-genomicranges. 259s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 259s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 259s Selecting previously unselected package r-bioc-rhtslib. 259s Preparing to unpack .../278-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 259s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 259s Selecting previously unselected package r-bioc-rsamtools. 259s Preparing to unpack .../279-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 259s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 259s Selecting previously unselected package r-bioc-matrixgenerics. 259s Preparing to unpack .../280-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 259s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 259s Selecting previously unselected package r-cran-lattice. 259s Preparing to unpack .../281-r-cran-lattice_0.22-5-1_arm64.deb ... 259s Unpacking r-cran-lattice (0.22-5-1) ... 260s Selecting previously unselected package r-cran-matrix. 260s Preparing to unpack .../282-r-cran-matrix_1.6-5-1_arm64.deb ... 260s Unpacking r-cran-matrix (1.6-5-1) ... 260s Selecting previously unselected package r-cran-abind. 260s Preparing to unpack .../283-r-cran-abind_1.4-5-2_all.deb ... 260s Unpacking r-cran-abind (1.4-5-2) ... 260s Selecting previously unselected package r-bioc-s4arrays. 260s Preparing to unpack .../284-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 260s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 260s Selecting previously unselected package r-bioc-sparsearray. 260s Preparing to unpack .../285-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 260s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 260s Selecting previously unselected package r-bioc-delayedarray. 260s Preparing to unpack .../286-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 260s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 260s Selecting previously unselected package r-bioc-summarizedexperiment. 260s Preparing to unpack .../287-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 260s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 260s Selecting previously unselected package r-bioc-genomicalignments. 260s Preparing to unpack .../288-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 260s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 260s Selecting previously unselected package r-cran-rjson. 260s Preparing to unpack .../289-r-cran-rjson_0.2.21-1_arm64.deb ... 260s Unpacking r-cran-rjson (0.2.21-1) ... 260s Selecting previously unselected package r-cran-restfulr. 260s Preparing to unpack .../290-r-cran-restfulr_0.0.15-1_arm64.deb ... 260s Unpacking r-cran-restfulr (0.0.15-1) ... 260s Selecting previously unselected package r-bioc-rtracklayer. 260s Preparing to unpack .../291-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 260s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 260s Selecting previously unselected package r-bioc-bsgenome. 260s Preparing to unpack .../292-r-bioc-bsgenome_1.70.2-1_all.deb ... 260s Unpacking r-bioc-bsgenome (1.70.2-1) ... 261s Selecting previously unselected package r-bioc-dnacopy. 261s Preparing to unpack .../293-r-bioc-dnacopy_1.76.0-1_arm64.deb ... 261s Unpacking r-bioc-dnacopy (1.76.0-1) ... 261s Selecting previously unselected package r-bioc-genomicfeatures. 261s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 261s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 261s Selecting previously unselected package r-bioc-org.hs.eg.db. 261s Preparing to unpack .../295-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 261s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 262s Selecting previously unselected package r-bioc-variantannotation. 262s Preparing to unpack .../296-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 262s Unpacking r-bioc-variantannotation (1.48.1-1) ... 262s Selecting previously unselected package r-cran-rcolorbrewer. 263s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 263s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 263s Selecting previously unselected package r-cran-data.table. 263s Preparing to unpack .../298-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 263s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 263s Selecting previously unselected package r-cran-gtable. 263s Preparing to unpack .../299-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 263s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 263s Selecting previously unselected package r-cran-isoband. 263s Preparing to unpack .../300-r-cran-isoband_0.2.7-1_arm64.deb ... 263s Unpacking r-cran-isoband (0.2.7-1) ... 264s Selecting previously unselected package r-cran-mass. 264s Preparing to unpack .../301-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 264s Unpacking r-cran-mass (7.3-60.0.1-1) ... 264s Selecting previously unselected package r-cran-nlme. 264s Preparing to unpack .../302-r-cran-nlme_3.1.164-1_arm64.deb ... 264s Unpacking r-cran-nlme (3.1.164-1) ... 264s Selecting previously unselected package r-cran-mgcv. 265s Preparing to unpack .../303-r-cran-mgcv_1.9-1-1_arm64.deb ... 265s Unpacking r-cran-mgcv (1.9-1-1) ... 265s Selecting previously unselected package r-cran-farver. 265s Preparing to unpack .../304-r-cran-farver_2.1.1-1_arm64.deb ... 265s Unpacking r-cran-farver (2.1.1-1) ... 265s Selecting previously unselected package r-cran-labeling. 266s Preparing to unpack .../305-r-cran-labeling_0.4.3-1_all.deb ... 266s Unpacking r-cran-labeling (0.4.3-1) ... 266s Selecting previously unselected package r-cran-colorspace. 266s Preparing to unpack .../306-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 266s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 266s Selecting previously unselected package r-cran-munsell. 267s Preparing to unpack .../307-r-cran-munsell_0.5.0-2build1_all.deb ... 267s Unpacking r-cran-munsell (0.5.0-2build1) ... 267s Selecting previously unselected package r-cran-viridislite. 267s Preparing to unpack .../308-r-cran-viridislite_0.4.2-2_all.deb ... 267s Unpacking r-cran-viridislite (0.4.2-2) ... 267s Selecting previously unselected package r-cran-scales. 267s Preparing to unpack .../309-r-cran-scales_1.3.0-1_all.deb ... 267s Unpacking r-cran-scales (1.3.0-1) ... 267s Selecting previously unselected package r-cran-ggplot2. 268s Preparing to unpack .../310-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 268s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 268s Selecting previously unselected package r-cran-gridextra. 268s Preparing to unpack .../311-r-cran-gridextra_2.3-3build1_all.deb ... 268s Unpacking r-cran-gridextra (2.3-3build1) ... 268s Selecting previously unselected package r-cran-vgam. 268s Preparing to unpack .../312-r-cran-vgam_1.1-9-1_arm64.deb ... 268s Unpacking r-cran-vgam (1.1-9-1) ... 268s Selecting previously unselected package r-cran-mclust. 268s Preparing to unpack .../313-r-cran-mclust_6.0.1-1_arm64.deb ... 268s Unpacking r-cran-mclust (6.0.1-1) ... 268s Selecting previously unselected package r-bioc-rhdf5lib. 268s Preparing to unpack .../314-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 268s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 268s Selecting previously unselected package r-bioc-rhdf5filters. 268s Preparing to unpack .../315-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 268s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 268s Selecting previously unselected package r-bioc-rhdf5. 269s Preparing to unpack .../316-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 269s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 269s Selecting previously unselected package r-bioc-purecn. 269s Preparing to unpack .../317-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 269s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 269s Selecting previously unselected package r-cran-brio. 269s Preparing to unpack .../318-r-cran-brio_1.1.4-1_arm64.deb ... 269s Unpacking r-cran-brio (1.1.4-1) ... 269s Selecting previously unselected package r-cran-ps. 269s Preparing to unpack .../319-r-cran-ps_1.7.6-1_arm64.deb ... 269s Unpacking r-cran-ps (1.7.6-1) ... 269s Selecting previously unselected package r-cran-processx. 269s Preparing to unpack .../320-r-cran-processx_3.8.3-1_arm64.deb ... 269s Unpacking r-cran-processx (3.8.3-1) ... 269s Selecting previously unselected package r-cran-callr. 269s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 269s Unpacking r-cran-callr (3.7.3-2) ... 269s Selecting previously unselected package r-cran-lazyeval. 269s Preparing to unpack .../322-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 269s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 269s Selecting previously unselected package r-cran-rex. 269s Preparing to unpack .../323-r-cran-rex_1.2.1-1_all.deb ... 269s Unpacking r-cran-rex (1.2.1-1) ... 269s Selecting previously unselected package r-cran-covr. 269s Preparing to unpack .../324-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 269s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 269s Selecting previously unselected package r-cran-desc. 269s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 269s Unpacking r-cran-desc (1.4.3-1) ... 269s Selecting previously unselected package r-cran-diffobj. 269s Preparing to unpack .../326-r-cran-diffobj_0.3.5-1_arm64.deb ... 269s Unpacking r-cran-diffobj (0.3.5-1) ... 269s Selecting previously unselected package r-cran-globals. 269s Preparing to unpack .../327-r-cran-globals_0.16.2-1_all.deb ... 269s Unpacking r-cran-globals (0.16.2-1) ... 269s Selecting previously unselected package r-cran-listenv. 269s Preparing to unpack .../328-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 269s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 269s Selecting previously unselected package r-cran-parallelly. 270s Preparing to unpack .../329-r-cran-parallelly_1.37.1-1_arm64.deb ... 270s Unpacking r-cran-parallelly (1.37.1-1) ... 270s Selecting previously unselected package r-cran-future. 270s Preparing to unpack .../330-r-cran-future_1.33.1+dfsg-1_all.deb ... 270s Unpacking r-cran-future (1.33.1+dfsg-1) ... 270s Selecting previously unselected package r-cran-getopt. 270s Preparing to unpack .../331-r-cran-getopt_1.20.4-1_all.deb ... 270s Unpacking r-cran-getopt (1.20.4-1) ... 270s Selecting previously unselected package r-cran-markdown. 270s Preparing to unpack .../332-r-cran-markdown_1.12+dfsg-1_all.deb ... 270s Unpacking r-cran-markdown (1.12+dfsg-1) ... 270s Selecting previously unselected package r-cran-optparse. 270s Preparing to unpack .../333-r-cran-optparse_1.7.4-1_all.deb ... 270s 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Setting up texlive-base (2023.20240207-1) ... 280s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 280s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 281s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 281s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 282s Setting up r-cran-magrittr (2.0.3-1) ... 282s Setting up r-cran-rappdirs (0.3.3-1) ... 282s Setting up r-cran-filelock (1.0.3-1) ... 282s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 282s Setting up r-cran-littler (0.3.19-1) ... 282s Setting up r-cran-bh (1.84.0-1) ... 282s Setting up r-cran-fs (1.6.3+dfsg-1) ... 282s Setting up r-cran-rcpp (1.0.12-1) ... 282s Setting up r-cran-curl (5.2.0+dfsg-1) ... 282s Setting up r-cran-codetools (0.2-19-1) ... 282s Setting up r-cran-brio (1.1.4-1) ... 282s Setting up r-cran-diffobj (0.3.5-1) ... 282s Setting up 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(1.32.0+dfsg-1) ... 282s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 282s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 282s Setting up r-bioc-annotationdbi (1.64.1-1) ... 282s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 282s Setting up r-cran-testthat (3.2.1-1) ... 282s Setting up r-cran-pscbs (0.66.0-2) ... 282s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 282s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 282s Setting up r-bioc-genomicalignments (1.38.2-1) ... 282s Setting up r-cran-bookdown (0.37+dfsg-1) ... 282s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 282s Setting up r-bioc-rtracklayer (1.62.0-1) ... 282s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 282s Setting up r-bioc-bsgenome (1.70.2-1) ... 282s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 282s Setting up r-bioc-variantannotation (1.48.1-1) ... 282s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 282s Setting up autopkgtest-satdep (0) ... 282s Processing triggers for man-db (2.12.0-3) ... 283s Processing triggers for install-info (7.1-3) ... 283s Processing triggers for libc-bin (2.39-0ubuntu2) ... 283s Processing triggers for tex-common (6.18) ... 284s Running updmap-sys. This may take some time... done. 284s Running mktexlsr /var/lib/texmf ... done. 284s Building format(s) --all. 321s This may take some time... done. 342s (Reading database ... 129336 files and directories currently installed.) 342s Removing autopkgtest-satdep (0) ... 343s autopkgtest [17:45:56]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 343s autopkgtest [17:45:56]: test pkg-r-autopkgtest: [----------------------- 343s Test: Try to load the R library PureCN 345s 345s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 345s Copyright (C) 2024 The R Foundation for Statistical Computing 345s Platform: aarch64-unknown-linux-gnu (64-bit) 345s 345s R is free software and comes with ABSOLUTELY NO WARRANTY. 345s You are welcome to redistribute it under certain conditions. 345s Type 'license()' or 'licence()' for distribution details. 345s 345s R is a collaborative project with many contributors. 345s Type 'contributors()' for more information and 345s 'citation()' on how to cite R or R packages in publications. 345s 345s Type 'demo()' for some demos, 'help()' for on-line help, or 345s 'help.start()' for an HTML browser interface to help. 345s Type 'q()' to quit R. 345s 345s > library('PureCN') 345s Loading required package: DNAcopy 345s Loading required package: VariantAnnotation 345s Loading required package: BiocGenerics 346s 346s Attaching package: ‘BiocGenerics’ 346s 346s The following objects are masked from ‘package:stats’: 346s 346s IQR, mad, sd, var, xtabs 346s 346s The following objects are masked from ‘package:base’: 346s 346s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 346s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 346s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 346s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 346s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 346s table, tapply, union, unique, unsplit, which.max, which.min 346s 346s Loading required package: MatrixGenerics 346s Loading required package: matrixStats 346s 346s Attaching package: ‘MatrixGenerics’ 346s 346s The following objects are masked from ‘package:matrixStats’: 346s 346s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 346s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 346s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 346s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 346s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 346s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 346s colWeightedMeans, colWeightedMedians, colWeightedSds, 346s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 346s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 346s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 346s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 346s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 346s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 346s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 346s rowWeightedSds, rowWeightedVars 346s 346s Loading required package: GenomeInfoDb 346s Loading required package: S4Vectors 346s Loading required package: stats4 346s 346s Attaching package: ‘S4Vectors’ 346s 346s The following object is masked from ‘package:utils’: 346s 346s findMatches 346s 346s The following objects are masked from ‘package:base’: 346s 346s expand.grid, I, unname 346s 346s Loading required package: IRanges 348s Loading required package: GenomicRanges 348s Loading required package: SummarizedExperiment 348s Loading required package: Biobase 349s Welcome to Bioconductor 349s 349s Vignettes contain introductory material; view with 349s 'browseVignettes()'. To cite Bioconductor, see 349s 'citation("Biobase")', and for packages 'citation("pkgname")'. 349s 349s 349s Attaching package: ‘Biobase’ 349s 349s The following object is masked from ‘package:MatrixGenerics’: 349s 349s rowMedians 349s 349s The following objects are masked from ‘package:matrixStats’: 349s 349s anyMissing, rowMedians 349s 352s Loading required package: Rsamtools 352s Loading required package: Biostrings 352s Loading required package: XVector 352s 352s Attaching package: ‘Biostrings’ 352s 352s The following object is masked from ‘package:base’: 352s 352s strsplit 352s 359s 359s Attaching package: ‘VariantAnnotation’ 359s 359s The following object is masked from ‘package:base’: 359s 359s tabulate 359s 359s > 359s > 360s Other tests are currently unsupported! 360s They will be progressively added. 361s autopkgtest [17:46:14]: test pkg-r-autopkgtest: -----------------------] 361s pkg-r-autopkgtest PASS 361s autopkgtest [17:46:14]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 362s autopkgtest [17:46:15]: @@@@@@@@@@@@@@@@@@@@ summary 362s pkg-r-autopkgtest PASS 380s Creating nova instance adt-noble-arm64-r-bioc-purecn-20240316-174013-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...