0s autopkgtest [13:46:48]: starting date and time: 2024-03-16 13:46:48+0000 0s autopkgtest [13:46:48]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:46:48]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.e48dfbfz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-purecn --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-purecn-20240316-134648-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 73s autopkgtest [13:48:01]: testbed dpkg architecture: arm64 73s autopkgtest [13:48:01]: testbed apt version: 2.7.12 73s autopkgtest [13:48:01]: @@@@@@@@@@@@@@@@@@@@ test bed setup 74s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 74s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 75s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 75s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 75s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 75s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 75s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 75s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 75s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 75s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 75s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 75s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 75s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 76s Fetched 9092 kB in 2s (5684 kB/s) 77s Reading package lists... 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s Calculating upgrade... 82s The following packages will be REMOVED: 82s libssl3 82s The following NEW packages will be installed: 82s libssl3t64 82s The following packages have been kept back: 82s curl 82s The following packages will be upgraded: 82s openssl ubuntu-minimal ubuntu-standard 82s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 82s Need to get 2775 kB of archives. 82s After this operation, 72.7 kB of additional disk space will be used. 82s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 82s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 82s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 82s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 83s Fetched 2775 kB in 1s (4059 kB/s) 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 84s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 84s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 84s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 84s wget depends on libssl3 (>= 3.0.0). 84s u-boot-tools depends on libssl3 (>= 3.0.0). 84s tnftp depends on libssl3 (>= 3.0.0). 84s tcpdump depends on libssl3 (>= 3.0.0). 84s systemd-resolved depends on libssl3 (>= 3.0.0). 84s systemd depends on libssl3 (>= 3.0.0). 84s sudo depends on libssl3 (>= 3.0.0). 84s sbsigntool depends on libssl3 (>= 3.0.0). 84s rsync depends on libssl3 (>= 3.0.0). 84s python3-cryptography depends on libssl3 (>= 3.0.0). 84s openssh-server depends on libssl3 (>= 3.0.10). 84s openssh-client depends on libssl3 (>= 3.0.10). 84s mtd-utils depends on libssl3 (>= 3.0.0). 84s mokutil depends on libssl3 (>= 3.0.0). 84s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 84s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 84s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 84s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 84s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 84s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 84s libnvme1 depends on libssl3 (>= 3.0.0). 84s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 84s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 84s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 84s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 84s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 84s kmod depends on libssl3 (>= 3.0.0). 84s dhcpcd-base depends on libssl3 (>= 3.0.0). 84s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 84s 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 84s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 84s Selecting previously unselected package libssl3t64:arm64. 84s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 84s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 84s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 84s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 84s Unpacking ubuntu-minimal (1.536) over (1.535) ... 84s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 84s Unpacking ubuntu-standard (1.536) over (1.535) ... 84s Setting up ubuntu-minimal (1.536) ... 84s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 84s Setting up ubuntu-standard (1.536) ... 84s Setting up openssl (3.0.13-0ubuntu1) ... 84s Processing triggers for man-db (2.12.0-3) ... 85s Processing triggers for libc-bin (2.39-0ubuntu2) ... 86s Reading package lists... 86s Building dependency tree... 86s Reading state information... 87s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 88s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 88s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 88s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 88s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 90s Reading package lists... 90s Reading package lists... 91s Building dependency tree... 91s Reading state information... 92s Calculating upgrade... 93s The following packages have been kept back: 93s curl 93s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 93s Reading package lists... 93s Building dependency tree... 93s Reading state information... 95s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 98s autopkgtest [13:48:26]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 98s autopkgtest [13:48:26]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-purecn 103s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (dsc) [2494 B] 103s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (tar) [5486 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-purecn 2.8.1+dfsg-1 (diff) [6412 B] 103s gpgv: Signature made Fri Dec 1 10:51:26 2023 UTC 103s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 103s gpgv: issuer "tillea@rki.de" 103s gpgv: Can't check signature: No public key 103s dpkg-source: warning: cannot verify inline signature for ./r-bioc-purecn_2.8.1+dfsg-1.dsc: no acceptable signature found 105s autopkgtest [13:48:33]: testing package r-bioc-purecn version 2.8.1+dfsg-1 105s autopkgtest [13:48:33]: build not needed 107s autopkgtest [13:48:35]: test pkg-r-autopkgtest: preparing testbed 108s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Starting pkgProblemResolver with broken count: 0 110s Starting 2 pkgProblemResolver with broken count: 0 110s Done 111s The following additional packages will be installed: 111s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 111s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 111s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 111s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 111s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 111s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 111s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 111s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 111s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 111s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 111s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 111s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 111s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 111s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 111s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 111s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 111s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 111s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 111s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 111s libjs-popper.js libjs-prettify libjs-sifter.js 111s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 111s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 111s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 111s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 111s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 111s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 111s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 111s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 111s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 111s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 111s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 111s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 111s r-base-dev r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase 111s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 111s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 111s r-bioc-delayedarray r-bioc-dnacopy r-bioc-genomeinfodb 111s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 111s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 111s r-bioc-org.hs.eg.db r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters 111s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 111s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 111s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 111s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 111s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 111s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 111s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 111s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 111s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 111s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 111s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 111s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-generics 111s r-cran-getopt r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 111s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 111s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 111s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 111s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 111s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mclust 111s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 111s r-cran-openssl r-cran-optparse r-cran-parallelly r-cran-pillar 111s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 111s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 111s r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs r-cran-purrr 111s r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 111s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rematch2 111s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 111s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 111s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 111s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 111s r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo 111s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 111s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 111s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 111s zlib1g-dev 111s Suggested packages: 111s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 111s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 111s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 111s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 111s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 111s libboost-context1.83-dev libboost-contract1.83-dev 111s libboost-coroutine1.83-dev libboost-date-time1.83-dev 111s libboost-exception1.83-dev libboost-fiber1.83-dev 111s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 111s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 111s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 111s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 111s libboost-numpy1.83-dev libboost-program-options1.83-dev 111s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 111s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 111s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 111s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 111s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 111s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 111s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 111s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 111s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 111s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 111s librsvg2-bin groff ghc php python ruby libjs-katex 111s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 111s r-base-html texlive-plain-generic texlive-fonts-recommended 111s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-runit 111s r-bioc-graph r-cran-princurve r-bioc-all r-bioc-affy r-bioc-deseq2 111s r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 111s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 111s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 111s r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-bioc-gviz 111s r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats r-cran-bench 111s r-cran-tinytest r-bioc-limma r-bioc-snpstats r-cran-roxygen2 r-cran-ff 111s r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 111s r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rstudioapi r-cran-rmysql 111s r-cran-lubridate r-cran-magick r-cran-sf r-cran-geometry r-cran-formattable 111s r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units 111s r-cran-vdiffr r-cran-inline r-cran-hmisc r-cran-rvest r-cran-rmpi 111s r-cran-rlecuyer r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 111s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 111s hintview texlive-latex-base-doc wp2latex 111s Recommended packages: 111s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 111s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 111s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 111s r-cran-testit r-cran-tufte r-cran-webshot r-cran-thematic r-cran-cliapp 111s r-cran-mockery r-cran-whoami r-cran-dt r-cran-bench r-cran-decor 111s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-xts r-cran-nanotime 111s r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-broom r-cran-rmysql 111s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-rhpcblasctl r-cran-r.rsp 111s r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp 111s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf 111s r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-jpeg r-cran-readr 111s r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 111s node-highlight.js r-cran-lintr r-cran-tidyverse r-cran-r.devices 111s r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr r-cran-webfakes 111s r-cran-pingr r-cran-foreign r-cran-nnet r-cran-runit r-cran-usethis 111s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-dichromat 111s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 111s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 111s x11-xserver-utils 111s The following packages will be REMOVED: 111s libcurl4 libpsl5 111s The following NEW packages will be installed: 111s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 111s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 111s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 111s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 111s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 111s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 111s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 111s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 111s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 111s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 111s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 111s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 111s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 111s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 111s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 111s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 111s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 111s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 111s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 111s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 111s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 111s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 111s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 111s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 111s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 111s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 111s libsnappy1v5 libssl-dev libstdc++-13-dev libsynctex2 libsz2 libtcl8.6 111s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 111s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 111s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 111s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 111s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 111s r-base-dev r-bioc-annotationdbi r-bioc-aroma.light r-bioc-biobase 111s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 111s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome 111s r-bioc-delayedarray r-bioc-dnacopy r-bioc-genomeinfodb 111s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 111s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 111s r-bioc-org.hs.eg.db r-bioc-purecn r-bioc-rhdf5 r-bioc-rhdf5filters 111s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 111s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 111s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 111s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 111s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 111s r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem r-cran-callr 111s r-cran-cli r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-covr 111s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 111s r-cran-dbplyr r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 111s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 111s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 111s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-generics 111s r-cran-getopt r-cran-ggplot2 r-cran-globals r-cran-glue r-cran-gridextra 111s r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 111s r-cran-httr r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr 111s r-cran-labeling r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval 111s r-cran-lifecycle r-cran-listenv r-cran-littler r-cran-magrittr 111s r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mclust 111s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 111s r-cran-openssl r-cran-optparse r-cran-parallelly r-cran-pillar 111s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 111s r-cran-plogr r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx 111s r-cran-progress r-cran-promises r-cran-ps r-cran-pscbs r-cran-purrr 111s r-cran-r.cache r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 111s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rematch2 111s r-cran-restfulr r-cran-rex r-cran-rjson r-cran-rlang r-cran-rmarkdown 111s r-cran-rprojroot r-cran-rsqlite r-cran-sass r-cran-scales r-cran-shiny 111s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 111s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 111s r-cran-utf8 r-cran-vctrs r-cran-vgam r-cran-viridislite r-cran-waldo 111s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 111s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 111s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 111s zlib1g-dev 111s The following packages will be upgraded: 111s curl 111s 1 upgraded, 345 newly installed, 2 to remove and 0 not upgraded. 111s Need to get 550 MB/550 MB of archives. 111s After this operation, 1844 MB of additional disk space will be used. 111s Get:1 /tmp/autopkgtest.SzX3u3/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [812 B] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 112s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 112s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 112s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 112s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 112s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 112s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 112s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 112s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 112s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 112s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 112s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 112s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 112s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 112s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 112s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 112s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 112s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 112s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 112s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 112s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 112s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 112s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 112s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 113s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 113s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 113s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 113s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 113s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 113s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 113s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 113s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 113s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 113s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 113s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 113s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 113s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 113s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 113s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 113s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 113s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 113s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 113s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 113s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 113s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 113s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 114s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 114s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 114s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 114s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 114s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 114s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 114s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 114s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 114s Get:59 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 114s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 114s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 114s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 114s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 114s Get:64 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 114s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 114s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 114s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 114s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 114s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 114s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 114s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 114s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 114s Get:73 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 114s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 114s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 114s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 114s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 114s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 114s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 114s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 114s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 114s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 114s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 114s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 114s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 114s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 114s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 114s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 114s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 114s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 114s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 114s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 114s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 114s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 114s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 114s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 115s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 115s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 115s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 115s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 115s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 115s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 115s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 115s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 115s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 115s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 115s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 115s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 115s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 115s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 115s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 115s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 115s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 115s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 116s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 116s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 116s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 116s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 116s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 116s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 116s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 116s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 116s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 116s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 116s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 116s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 116s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 116s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 116s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 116s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 116s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 116s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 116s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 116s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 116s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 116s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 116s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 116s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 116s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 116s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 116s Get:141 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 116s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 116s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 116s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 116s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 116s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 116s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 116s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 116s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 116s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 116s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 116s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 116s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 116s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 116s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 116s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 117s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 117s Get:158 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 117s Get:159 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 117s Get:160 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 117s Get:161 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 117s Get:162 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 117s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 117s Get:164 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 117s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 117s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 117s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 117s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 117s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 117s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 117s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 117s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 117s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 117s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 118s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 118s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 118s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 118s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 118s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 118s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 118s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 118s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 118s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 118s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 118s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 118s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 118s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 118s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 118s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 118s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 118s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 118s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 118s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 118s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 118s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 118s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 118s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 118s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 118s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 118s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 118s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 118s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 118s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 119s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 119s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 119s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 119s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 119s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 119s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 119s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-aroma.light all 3.32.0-1 [576 kB] 119s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 119s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 119s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 119s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 119s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 119s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 119s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 119s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 119s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 119s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 119s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 119s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 119s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 120s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 120s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 120s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 120s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 120s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 120s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 120s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 120s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 120s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 120s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 120s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 120s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 120s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 120s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 120s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 120s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 120s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 120s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 120s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 120s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 120s Get:244 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 120s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 120s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 120s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 120s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 120s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 120s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 120s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 120s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 120s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 120s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 120s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 120s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 120s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 120s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 120s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 120s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 120s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 120s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 120s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 120s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 121s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 121s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 121s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 121s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 121s Get:269 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 121s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 121s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 122s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 122s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 127s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 127s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 127s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 127s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 127s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 127s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 127s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 127s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 127s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 127s Get:283 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 127s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 127s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 127s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 127s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 127s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 127s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 127s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 128s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 128s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 128s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 128s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 128s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 128s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 128s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dnacopy arm64 1.76.0-1 [379 kB] 128s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 128s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 131s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 131s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 131s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 131s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 131s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 131s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 131s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 132s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 132s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 132s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 132s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 132s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 132s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 132s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 132s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 132s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 132s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vgam arm64 1.1-9-1 [7301 kB] 132s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mclust arm64 6.0.1-1 [3898 kB] 132s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 132s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 132s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 132s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-purecn all 2.8.1+dfsg-1 [6042 kB] 133s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 133s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 133s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 133s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 133s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 133s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 133s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 133s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 133s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 133s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 133s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 133s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 133s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 133s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-getopt all 1.20.4-1 [38.4 kB] 133s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 133s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-optparse all 1.7.4-1 [81.6 kB] 133s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 133s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 133s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 133s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 133s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.cache all 0.16.0-1 [113 kB] 133s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pscbs all 0.66.0-2 [4345 kB] 133s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 133s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 133s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 136s Preconfiguring packages ... 136s Fetched 550 MB in 22s (24.8 MB/s) 136s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 136s wget depends on libpsl5 (>= 0.16.0). 136s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 136s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 136s Removing libpsl5:arm64 (0.21.2-1build1) ... 136s Selecting previously unselected package libpsl5t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 136s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 136s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 136s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 136s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 136s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 136s Selecting previously unselected package libcurl4t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 136s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 136s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 137s Selecting previously unselected package libc-dev-bin. 137s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 137s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 137s Selecting previously unselected package linux-libc-dev:arm64. 137s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 137s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 137s Selecting previously unselected package libcrypt-dev:arm64. 137s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 137s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 137s Selecting previously unselected package libtirpc-dev:arm64. 137s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 137s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 137s Selecting previously unselected package libnsl-dev:arm64. 137s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 137s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 137s Selecting previously unselected package rpcsvc-proto. 137s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 137s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 137s Selecting previously unselected package libc6-dev:arm64. 137s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 137s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 137s Selecting previously unselected package libisl23:arm64. 137s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 137s Unpacking libisl23:arm64 (0.26-3) ... 137s Selecting previously unselected package libmpc3:arm64. 137s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 137s Unpacking libmpc3:arm64 (1.3.1-1) ... 137s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 137s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 137s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 137s Selecting previously unselected package cpp-13. 138s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 138s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 138s Selecting previously unselected package cpp-aarch64-linux-gnu. 138s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package cpp. 138s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 138s Unpacking cpp (4:13.2.0-7ubuntu1) ... 138s Selecting previously unselected package libcc1-0:arm64. 138s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libgomp1:arm64. 138s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libitm1:arm64. 138s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 138s Selecting previously unselected package libatomic1:arm64. 138s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 138s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libasan8:arm64. 139s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package liblsan0:arm64. 139s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libtsan2:arm64. 139s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libubsan1:arm64. 139s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libhwasan0:arm64. 139s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 139s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 139s Selecting previously unselected package libgcc-13-dev:arm64. 139s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 139s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 139s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 139s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package gcc-13. 140s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package gcc-aarch64-linux-gnu. 140s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package gcc. 140s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 140s Unpacking gcc (4:13.2.0-7ubuntu1) ... 140s Selecting previously unselected package libstdc++-13-dev:arm64. 140s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-13-aarch64-linux-gnu. 140s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 140s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 140s Selecting previously unselected package g++-13. 141s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 141s Unpacking g++-13 (13.2.0-17ubuntu2) ... 141s Selecting previously unselected package g++-aarch64-linux-gnu. 141s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package g++. 141s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 141s Unpacking g++ (4:13.2.0-7ubuntu1) ... 141s Selecting previously unselected package build-essential. 141s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 141s Unpacking build-essential (12.10ubuntu1) ... 141s Selecting previously unselected package dctrl-tools. 141s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 141s Unpacking dctrl-tools (2.24-3build2) ... 141s Selecting previously unselected package fonts-dejavu-mono. 141s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-mono (2.37-8) ... 141s Selecting previously unselected package fonts-dejavu-core. 141s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 141s Unpacking fonts-dejavu-core (2.37-8) ... 141s Selecting previously unselected package fontconfig-config. 142s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 142s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package libfontconfig1:arm64. 142s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 142s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 142s Selecting previously unselected package fontconfig. 143s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 143s Unpacking fontconfig (2.15.0-1ubuntu1) ... 143s Selecting previously unselected package fonts-font-awesome. 143s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 143s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 143s Selecting previously unselected package fonts-glyphicons-halflings. 143s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 143s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 143s Selecting previously unselected package fonts-lmodern. 143s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 143s Unpacking fonts-lmodern (2.005-1) ... 143s Selecting previously unselected package fonts-mathjax. 143s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 143s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 143s Selecting previously unselected package libgfortran5:arm64. 143s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 143s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 143s Selecting previously unselected package libgfortran-13-dev:arm64. 143s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 143s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 143s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 143s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-13. 144s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 144s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 144s Selecting previously unselected package gfortran-aarch64-linux-gnu. 144s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package gfortran. 144s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 144s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 144s Selecting previously unselected package hdf5-helpers. 144s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 144s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 144s Selecting previously unselected package icu-devtools. 144s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 144s Unpacking icu-devtools (74.2-1ubuntu1) ... 144s Selecting previously unselected package javascript-common. 144s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 144s Unpacking javascript-common (11+nmu1) ... 144s Selecting previously unselected package libaec0:arm64. 144s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 144s Unpacking libaec0:arm64 (1.1.2-1) ... 144s Selecting previously unselected package libio-string-perl. 144s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 144s Unpacking libio-string-perl (1.08-4) ... 145s Selecting previously unselected package liblatex-tounicode-perl. 145s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 145s Unpacking liblatex-tounicode-perl (0.54-2) ... 145s Selecting previously unselected package libbibtex-parser-perl. 145s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 145s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 145s Selecting previously unselected package libblas3:arm64. 145s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 145s Unpacking libblas3:arm64 (3.12.0-3) ... 145s Selecting previously unselected package libblas-dev:arm64. 145s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 145s Unpacking libblas-dev:arm64 (3.12.0-3) ... 145s Selecting previously unselected package libsnappy1v5:arm64. 145s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 145s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 145s Selecting previously unselected package libblosc1:arm64. 145s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 145s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 145s Selecting previously unselected package libboost1.83-dev:arm64. 145s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 145s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 147s Selecting previously unselected package libboost-dev:arm64. 147s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 147s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 147s Selecting previously unselected package libbz2-dev:arm64. 147s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 147s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 147s Selecting previously unselected package libpixman-1-0:arm64. 147s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 147s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 147s Selecting previously unselected package libxcb-render0:arm64. 147s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 147s Unpacking libxcb-render0:arm64 (1.15-1) ... 147s Selecting previously unselected package libxcb-shm0:arm64. 147s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 147s Unpacking libxcb-shm0:arm64 (1.15-1) ... 147s Selecting previously unselected package libxrender1:arm64. 147s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 147s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 147s Selecting previously unselected package libcairo2:arm64. 147s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 147s Unpacking libcairo2:arm64 (1.18.0-1) ... 147s Selecting previously unselected package libcurl4-openssl-dev:arm64. 147s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 147s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 147s Selecting previously unselected package libdatrie1:arm64. 147s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 147s Unpacking libdatrie1:arm64 (0.2.13-3) ... 148s Selecting previously unselected package libdeflate0:arm64. 148s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 148s Unpacking libdeflate0:arm64 (1.19-1) ... 148s Selecting previously unselected package libgraphite2-3:arm64. 148s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 148s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 148s Selecting previously unselected package libharfbuzz0b:arm64. 148s Preparing to unpack .../073-libharfbuzz0b_8.3.0-2_arm64.deb ... 148s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 148s Selecting previously unselected package libsz2:arm64. 148s Preparing to unpack .../074-libsz2_1.1.2-1_arm64.deb ... 148s Unpacking libsz2:arm64 (1.1.2-1) ... 148s Selecting previously unselected package libhdf5-103-1:arm64. 148s Preparing to unpack .../075-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 148s Preparing to unpack .../076-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package libhdf5-fortran-102:arm64. 148s Preparing to unpack .../077-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package libhdf5-hl-100:arm64. 148s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 148s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 148s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 148s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 148s Selecting previously unselected package zlib1g-dev:arm64. 149s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 149s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 149s Selecting previously unselected package libjpeg-turbo8:arm64. 149s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 149s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 149s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 149s Preparing to unpack .../083-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 149s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 149s Selecting previously unselected package libjpeg8:arm64. 149s Preparing to unpack .../084-libjpeg8_8c-2ubuntu11_arm64.deb ... 149s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 149s Selecting previously unselected package libjpeg8-dev:arm64. 149s Preparing to unpack .../085-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 149s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 149s Selecting previously unselected package libjpeg-dev:arm64. 149s Preparing to unpack .../086-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 149s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 149s Selecting previously unselected package libaec-dev:arm64. 149s Preparing to unpack .../087-libaec-dev_1.1.2-1_arm64.deb ... 149s Unpacking libaec-dev:arm64 (1.1.2-1) ... 149s Selecting previously unselected package libssl-dev:arm64. 149s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 149s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 149s Selecting previously unselected package libhdf5-dev. 149s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 149s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 149s Selecting previously unselected package x11-common. 149s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 149s Unpacking x11-common (1:7.7+23ubuntu2) ... 149s Selecting previously unselected package libice6:arm64. 149s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 149s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 149s Selecting previously unselected package libicu-dev:arm64. 149s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 149s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 150s Selecting previously unselected package libjs-bootstrap. 150s Preparing to unpack .../093-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 150s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 150s Selecting previously unselected package libjs-popper.js. 150s Preparing to unpack .../094-libjs-popper.js_1.16.1+ds-6_all.deb ... 150s Unpacking libjs-popper.js (1.16.1+ds-6) ... 150s Selecting previously unselected package libjs-bootstrap4. 150s Preparing to unpack .../095-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 150s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 150s Selecting previously unselected package libjs-d3. 150s Preparing to unpack .../096-libjs-d3_3.5.17-4_all.deb ... 150s Unpacking libjs-d3 (3.5.17-4) ... 150s Selecting previously unselected package libjs-es5-shim. 150s Preparing to unpack .../097-libjs-es5-shim_4.6.7-2_all.deb ... 150s Unpacking libjs-es5-shim (4.6.7-2) ... 150s Selecting previously unselected package libjs-highlight.js. 150s Preparing to unpack .../098-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 150s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 151s Selecting previously unselected package libjs-jquery. 151s Preparing to unpack .../099-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 151s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 151s Selecting previously unselected package libjs-jquery-datatables. 151s Preparing to unpack .../100-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 151s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 151s Selecting previously unselected package libjs-sifter.js. 151s Preparing to unpack .../101-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 151s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 151s Selecting previously unselected package libjs-microplugin.js. 151s Preparing to unpack .../102-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 151s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 151s Selecting previously unselected package libjs-jquery-selectize.js. 151s Preparing to unpack .../103-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 151s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 151s Selecting previously unselected package libjs-jquery-ui. 151s Preparing to unpack .../104-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 151s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 151s Selecting previously unselected package libjs-json. 151s Preparing to unpack .../105-libjs-json_0~20221030+~1.0.8-1_all.deb ... 151s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 151s Selecting previously unselected package libjs-lunr. 151s Preparing to unpack .../106-libjs-lunr_2.3.9~dfsg-2_all.deb ... 151s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 151s Selecting previously unselected package libjs-prettify. 151s Preparing to unpack .../107-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 151s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 151s Selecting previously unselected package libkpathsea6:arm64. 151s Preparing to unpack .../108-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 151s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 151s Selecting previously unselected package liblapack3:arm64. 151s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 151s Unpacking liblapack3:arm64 (3.12.0-3) ... 151s Selecting previously unselected package liblapack-dev:arm64. 152s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 152s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 152s Selecting previously unselected package liblerc4:arm64. 152s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 152s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 152s Selecting previously unselected package liblua5.4-0:arm64. 152s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 152s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 152s Selecting previously unselected package libncurses-dev:arm64. 152s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 152s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 152s Selecting previously unselected package libthai-data. 152s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 152s Unpacking libthai-data (0.1.29-2) ... 152s Selecting previously unselected package libthai0:arm64. 152s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 152s Unpacking libthai0:arm64 (0.1.29-2) ... 152s Selecting previously unselected package libpango-1.0-0:arm64. 153s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 153s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 153s Selecting previously unselected package libpangoft2-1.0-0:arm64. 153s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 153s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 153s Selecting previously unselected package libpangocairo-1.0-0:arm64. 154s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 154s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 154s Selecting previously unselected package libpaper1:arm64. 154s Preparing to unpack .../119-libpaper1_1.1.29_arm64.deb ... 154s Unpacking libpaper1:arm64 (1.1.29) ... 154s Selecting previously unselected package libpaper-utils. 154s Preparing to unpack .../120-libpaper-utils_1.1.29_arm64.deb ... 154s Unpacking libpaper-utils (1.1.29) ... 154s Selecting previously unselected package libpcre2-16-0:arm64. 154s Preparing to unpack .../121-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 154s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 155s Selecting previously unselected package libpcre2-32-0:arm64. 155s Preparing to unpack .../122-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 155s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 155s Selecting previously unselected package libpcre2-posix3:arm64. 155s Preparing to unpack .../123-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 155s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 155s Selecting previously unselected package libpcre2-dev:arm64. 155s Preparing to unpack .../124-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 155s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 155s Selecting previously unselected package libpkgconf3:arm64. 156s Preparing to unpack .../125-libpkgconf3_1.8.1-2_arm64.deb ... 156s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 157s Selecting previously unselected package libpng-dev:arm64. 157s Preparing to unpack .../126-libpng-dev_1.6.43-1_arm64.deb ... 157s Unpacking libpng-dev:arm64 (1.6.43-1) ... 158s Selecting previously unselected package libpotrace0:arm64. 158s Preparing to unpack .../127-libpotrace0_1.16-2_arm64.deb ... 158s Unpacking libpotrace0:arm64 (1.16-2) ... 158s Selecting previously unselected package libptexenc1:arm64. 158s Preparing to unpack .../128-libptexenc1_2023.20230311.66589-9_arm64.deb ... 158s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 159s Selecting previously unselected package libreadline-dev:arm64. 159s Preparing to unpack .../129-libreadline-dev_8.2-3_arm64.deb ... 159s Unpacking libreadline-dev:arm64 (8.2-3) ... 159s Selecting previously unselected package libsharpyuv0:arm64. 160s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 160s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 160s Selecting previously unselected package libsm6:arm64. 160s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 160s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 160s Selecting previously unselected package libsynctex2:arm64. 160s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 160s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 160s Selecting previously unselected package libtcl8.6:arm64. 161s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 161s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 161s Selecting previously unselected package libteckit0:arm64. 161s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 161s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 161s Selecting previously unselected package libtexlua53-5:arm64. 161s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 161s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 161s Selecting previously unselected package libjbig0:arm64. 161s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 161s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 161s Selecting previously unselected package libwebp7:arm64. 161s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 161s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 161s Selecting previously unselected package libtiff6:arm64. 161s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 161s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 161s Selecting previously unselected package libxft2:arm64. 162s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 162s Unpacking libxft2:arm64 (2.3.6-1) ... 162s Selecting previously unselected package libxss1:arm64. 162s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 162s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 162s Selecting previously unselected package libtk8.6:arm64. 162s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 162s Unpacking libtk8.6:arm64 (8.6.13-2) ... 162s Selecting previously unselected package libxt6:arm64. 162s Preparing to unpack .../142-libxt6_1%3a1.2.1-1.1_arm64.deb ... 162s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 162s Selecting previously unselected package libxmu6:arm64. 162s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 162s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 162s Selecting previously unselected package libxpm4:arm64. 162s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 162s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 162s Selecting previously unselected package libxaw7:arm64. 162s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 162s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 162s Selecting previously unselected package libxi6:arm64. 162s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 162s Unpacking libxi6:arm64 (2:1.8.1-1) ... 162s Selecting previously unselected package libzzip-0-13:arm64. 162s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 162s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 162s Selecting previously unselected package node-bootstrap-sass. 163s Preparing to unpack .../148-node-bootstrap-sass_3.4.3-2_all.deb ... 163s Unpacking node-bootstrap-sass (3.4.3-2) ... 163s Selecting previously unselected package node-html5shiv. 163s Preparing to unpack .../149-node-html5shiv_3.7.3+dfsg-5_all.deb ... 163s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 163s Selecting previously unselected package node-normalize.css. 163s Preparing to unpack .../150-node-normalize.css_8.0.1-5_all.deb ... 163s Unpacking node-normalize.css (8.0.1-5) ... 163s Selecting previously unselected package pandoc-data. 163s Preparing to unpack .../151-pandoc-data_3.1.3-1_all.deb ... 163s Unpacking pandoc-data (3.1.3-1) ... 163s Selecting previously unselected package pandoc. 163s Preparing to unpack .../152-pandoc_3.1.3+ds-2_arm64.deb ... 163s Unpacking pandoc (3.1.3+ds-2) ... 164s Selecting previously unselected package pkgconf-bin. 164s Preparing to unpack .../153-pkgconf-bin_1.8.1-2_arm64.deb ... 164s Unpacking pkgconf-bin (1.8.1-2) ... 164s Selecting previously unselected package pkgconf:arm64. 164s Preparing to unpack .../154-pkgconf_1.8.1-2_arm64.deb ... 164s Unpacking pkgconf:arm64 (1.8.1-2) ... 164s Selecting previously unselected package pkg-config:arm64. 164s Preparing to unpack .../155-pkg-config_1.8.1-2_arm64.deb ... 164s Unpacking pkg-config:arm64 (1.8.1-2) ... 164s Selecting previously unselected package zip. 164s Preparing to unpack .../156-zip_3.0-13_arm64.deb ... 164s Unpacking zip (3.0-13) ... 164s Selecting previously unselected package unzip. 164s Preparing to unpack .../157-unzip_6.0-28ubuntu3_arm64.deb ... 164s Unpacking unzip (6.0-28ubuntu3) ... 164s Selecting previously unselected package xdg-utils. 164s Preparing to unpack .../158-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 164s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 164s Selecting previously unselected package r-base-core. 164s Preparing to unpack .../159-r-base-core_4.3.2-1build1_arm64.deb ... 164s Unpacking r-base-core (4.3.2-1build1) ... 165s Selecting previously unselected package liblzma-dev:arm64. 165s Preparing to unpack .../160-liblzma-dev_5.4.5-0.3_arm64.deb ... 165s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 165s Selecting previously unselected package r-base-dev. 165s Preparing to unpack .../161-r-base-dev_4.3.2-1build1_all.deb ... 165s Unpacking r-base-dev (4.3.2-1build1) ... 165s Selecting previously unselected package pkg-r-autopkgtest. 165s Preparing to unpack .../162-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 165s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 165s Selecting previously unselected package r-bioc-biocgenerics. 165s Preparing to unpack .../163-r-bioc-biocgenerics_0.48.1-2_all.deb ... 165s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 165s Selecting previously unselected package r-bioc-biobase. 165s Preparing to unpack .../164-r-bioc-biobase_2.62.0-1_arm64.deb ... 165s Unpacking r-bioc-biobase (2.62.0-1) ... 166s Selecting previously unselected package r-bioc-s4vectors. 166s Preparing to unpack .../165-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 166s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 166s Selecting previously unselected package r-bioc-iranges. 166s Preparing to unpack .../166-r-bioc-iranges_2.36.0-1_arm64.deb ... 166s Unpacking r-bioc-iranges (2.36.0-1) ... 166s Selecting previously unselected package r-cran-dbi. 166s Preparing to unpack .../167-r-cran-dbi_1.2.2-1_all.deb ... 166s Unpacking r-cran-dbi (1.2.2-1) ... 166s Selecting previously unselected package r-cran-bit. 166s Preparing to unpack .../168-r-cran-bit_4.0.5-1_arm64.deb ... 166s Unpacking r-cran-bit (4.0.5-1) ... 166s Selecting previously unselected package r-cran-bit64. 166s Preparing to unpack .../169-r-cran-bit64_4.0.5-1_arm64.deb ... 166s Unpacking r-cran-bit64 (4.0.5-1) ... 166s Selecting previously unselected package r-cran-rlang. 166s Preparing to unpack .../170-r-cran-rlang_1.1.3-1_arm64.deb ... 166s Unpacking r-cran-rlang (1.1.3-1) ... 166s Selecting previously unselected package r-cran-cli. 166s Preparing to unpack .../171-r-cran-cli_3.6.2-1_arm64.deb ... 166s Unpacking r-cran-cli (3.6.2-1) ... 166s Selecting previously unselected package r-cran-glue. 166s Preparing to unpack .../172-r-cran-glue_1.7.0-1_arm64.deb ... 166s Unpacking r-cran-glue (1.7.0-1) ... 166s Selecting previously unselected package r-cran-lifecycle. 166s Preparing to unpack .../173-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 166s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 166s Selecting previously unselected package r-cran-vctrs. 166s Preparing to unpack .../174-r-cran-vctrs_0.6.5-1_arm64.deb ... 166s Unpacking r-cran-vctrs (0.6.5-1) ... 166s Selecting previously unselected package r-cran-blob. 166s Preparing to unpack .../175-r-cran-blob_1.2.4-1_all.deb ... 166s Unpacking r-cran-blob (1.2.4-1) ... 166s Selecting previously unselected package r-cran-fastmap. 166s Preparing to unpack .../176-r-cran-fastmap_1.1.1-1_arm64.deb ... 166s Unpacking r-cran-fastmap (1.1.1-1) ... 166s Selecting previously unselected package r-cran-cachem. 167s Preparing to unpack .../177-r-cran-cachem_1.0.8-1_arm64.deb ... 167s Unpacking r-cran-cachem (1.0.8-1) ... 167s Selecting previously unselected package r-cran-memoise. 167s Preparing to unpack .../178-r-cran-memoise_2.0.1-1_all.deb ... 167s Unpacking r-cran-memoise (2.0.1-1) ... 167s Selecting previously unselected package r-cran-pkgconfig. 167s Preparing to unpack .../179-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 167s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 167s Selecting previously unselected package r-cran-plogr. 167s Preparing to unpack .../180-r-cran-plogr_0.2.0-3build1_all.deb ... 167s Unpacking r-cran-plogr (0.2.0-3build1) ... 167s Selecting previously unselected package r-cran-cpp11. 167s Preparing to unpack .../181-r-cran-cpp11_0.4.7-1_all.deb ... 167s Unpacking r-cran-cpp11 (0.4.7-1) ... 167s Selecting previously unselected package r-cran-rsqlite. 167s Preparing to unpack .../182-r-cran-rsqlite_2.3.4-1_arm64.deb ... 167s Unpacking r-cran-rsqlite (2.3.4-1) ... 167s Selecting previously unselected package r-cran-curl. 168s Preparing to unpack .../183-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 168s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 168s Selecting previously unselected package r-cran-jsonlite. 168s Preparing to unpack .../184-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 168s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 168s Selecting previously unselected package r-cran-mime. 168s Preparing to unpack .../185-r-cran-mime_0.12-1_arm64.deb ... 168s Unpacking r-cran-mime (0.12-1) ... 168s Selecting previously unselected package r-cran-sys. 168s Preparing to unpack .../186-r-cran-sys_3.4.2-1_arm64.deb ... 168s Unpacking r-cran-sys (3.4.2-1) ... 168s Selecting previously unselected package r-cran-askpass. 168s Preparing to unpack .../187-r-cran-askpass_1.2.0-1_arm64.deb ... 168s Unpacking r-cran-askpass (1.2.0-1) ... 168s Selecting previously unselected package r-cran-openssl. 168s Preparing to unpack .../188-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 168s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 168s Selecting previously unselected package r-cran-r6. 168s Preparing to unpack .../189-r-cran-r6_2.5.1-1_all.deb ... 168s Unpacking r-cran-r6 (2.5.1-1) ... 168s Selecting previously unselected package r-cran-httr. 168s Preparing to unpack .../190-r-cran-httr_1.4.7+dfsg-1_all.deb ... 168s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 168s Selecting previously unselected package r-cran-png. 168s Preparing to unpack .../191-r-cran-png_0.1-8-1_arm64.deb ... 168s Unpacking r-cran-png (0.1-8-1) ... 168s Selecting previously unselected package r-bioc-zlibbioc. 168s Preparing to unpack .../192-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 168s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 168s Selecting previously unselected package r-bioc-xvector. 168s Preparing to unpack .../193-r-bioc-xvector_0.42.0-1_arm64.deb ... 168s Unpacking r-bioc-xvector (0.42.0-1) ... 168s Selecting previously unselected package r-cran-bitops. 168s Preparing to unpack .../194-r-cran-bitops_1.0-7-1_arm64.deb ... 168s Unpacking r-cran-bitops (1.0-7-1) ... 169s Selecting previously unselected package r-cran-rcurl. 169s Preparing to unpack .../195-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 169s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 169s Selecting previously unselected package r-bioc-genomeinfodbdata. 169s Preparing to unpack .../196-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 169s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 169s Selecting previously unselected package r-bioc-genomeinfodb. 169s Preparing to unpack .../197-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 169s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 169s Selecting previously unselected package r-cran-crayon. 169s Preparing to unpack .../198-r-cran-crayon_1.5.2-1_all.deb ... 169s Unpacking r-cran-crayon (1.5.2-1) ... 169s Selecting previously unselected package r-bioc-biostrings. 169s Preparing to unpack .../199-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 169s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 169s Selecting previously unselected package r-bioc-keggrest. 169s Preparing to unpack .../200-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 169s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 169s Selecting previously unselected package r-bioc-annotationdbi. 169s Preparing to unpack .../201-r-bioc-annotationdbi_1.64.1-1_all.deb ... 169s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 169s Selecting previously unselected package r-cran-r.methodss3. 169s Preparing to unpack .../202-r-cran-r.methodss3_1.8.2-1_all.deb ... 169s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 169s Selecting previously unselected package r-cran-r.oo. 169s Preparing to unpack .../203-r-cran-r.oo_1.26.0-1_all.deb ... 169s Unpacking r-cran-r.oo (1.26.0-1) ... 169s Selecting previously unselected package r-cran-r.utils. 169s Preparing to unpack .../204-r-cran-r.utils_2.12.3-1_all.deb ... 169s Unpacking r-cran-r.utils (2.12.3-1) ... 170s Selecting previously unselected package r-cran-matrixstats. 170s Preparing to unpack .../205-r-cran-matrixstats_1.2.0-1_arm64.deb ... 170s Unpacking r-cran-matrixstats (1.2.0-1) ... 170s Selecting previously unselected package r-bioc-aroma.light. 170s Preparing to unpack .../206-r-bioc-aroma.light_3.32.0-1_all.deb ... 170s Unpacking r-bioc-aroma.light (3.32.0-1) ... 170s Selecting previously unselected package r-cran-generics. 170s Preparing to unpack .../207-r-cran-generics_0.1.3-1_all.deb ... 170s Unpacking r-cran-generics (0.1.3-1) ... 170s Selecting previously unselected package r-cran-magrittr. 170s Preparing to unpack .../208-r-cran-magrittr_2.0.3-1_arm64.deb ... 170s Unpacking r-cran-magrittr (2.0.3-1) ... 170s Selecting previously unselected package r-cran-fansi. 170s Preparing to unpack .../209-r-cran-fansi_1.0.5-1_arm64.deb ... 170s Unpacking r-cran-fansi (1.0.5-1) ... 170s Selecting previously unselected package r-cran-utf8. 170s Preparing to unpack .../210-r-cran-utf8_1.2.4-1_arm64.deb ... 170s Unpacking r-cran-utf8 (1.2.4-1) ... 170s Selecting previously unselected package r-cran-pillar. 170s Preparing to unpack .../211-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 170s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 170s Selecting previously unselected package r-cran-tibble. 170s Preparing to unpack .../212-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 170s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 170s Selecting previously unselected package r-cran-withr. 171s Preparing to unpack .../213-r-cran-withr_2.5.0-1_all.deb ... 171s Unpacking r-cran-withr (2.5.0-1) ... 171s Selecting previously unselected package r-cran-tidyselect. 171s Preparing to unpack .../214-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 171s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 171s Selecting previously unselected package r-cran-dplyr. 171s Preparing to unpack .../215-r-cran-dplyr_1.1.4-1_arm64.deb ... 171s Unpacking r-cran-dplyr (1.1.4-1) ... 171s Selecting previously unselected package r-cran-purrr. 171s Preparing to unpack .../216-r-cran-purrr_1.0.2-1_arm64.deb ... 171s Unpacking r-cran-purrr (1.0.2-1) ... 171s Selecting previously unselected package r-cran-stringi. 171s Preparing to unpack .../217-r-cran-stringi_1.8.3-1_arm64.deb ... 171s Unpacking r-cran-stringi (1.8.3-1) ... 172s Selecting previously unselected package r-cran-stringr. 172s Preparing to unpack .../218-r-cran-stringr_1.5.1-1_all.deb ... 172s Unpacking r-cran-stringr (1.5.1-1) ... 172s Selecting previously unselected package r-cran-tidyr. 172s Preparing to unpack .../219-r-cran-tidyr_1.3.1-1_arm64.deb ... 172s Unpacking r-cran-tidyr (1.3.1-1) ... 172s Selecting previously unselected package r-cran-dbplyr. 172s Preparing to unpack .../220-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 172s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 172s Selecting previously unselected package r-cran-filelock. 172s Preparing to unpack .../221-r-cran-filelock_1.0.3-1_arm64.deb ... 172s Unpacking r-cran-filelock (1.0.3-1) ... 172s Selecting previously unselected package r-bioc-biocfilecache. 173s Preparing to unpack .../222-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 173s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 173s Selecting previously unselected package r-bioc-biocio. 173s Preparing to unpack .../223-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 173s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 173s Selecting previously unselected package r-cran-formatr. 173s Preparing to unpack .../224-r-cran-formatr_1.14-1_all.deb ... 173s Unpacking r-cran-formatr (1.14-1) ... 173s Selecting previously unselected package r-cran-lambda.r. 173s Preparing to unpack .../225-r-cran-lambda.r_1.2.4-2build1_all.deb ... 173s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 173s Selecting previously unselected package r-cran-futile.options. 173s Preparing to unpack .../226-r-cran-futile.options_1.0.1-3build1_all.deb ... 173s Unpacking r-cran-futile.options (1.0.1-3build1) ... 173s Selecting previously unselected package r-cran-futile.logger. 174s Preparing to unpack .../227-r-cran-futile.logger_1.4.3-4build1_all.deb ... 174s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 174s Selecting previously unselected package r-cran-snow. 174s Preparing to unpack .../228-r-cran-snow_1%3a0.4.4-2_all.deb ... 174s Unpacking r-cran-snow (1:0.4.4-2) ... 174s Selecting previously unselected package r-cran-codetools. 174s Preparing to unpack .../229-r-cran-codetools_0.2-19-1_all.deb ... 174s Unpacking r-cran-codetools (0.2-19-1) ... 174s Selecting previously unselected package r-cran-bh. 174s Preparing to unpack .../230-r-cran-bh_1.84.0-1_all.deb ... 174s Unpacking r-cran-bh (1.84.0-1) ... 174s Selecting previously unselected package r-bioc-biocparallel. 175s Preparing to unpack .../231-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 175s Unpacking r-bioc-biocparallel (1.36.0-1) ... 175s Selecting previously unselected package r-cran-base64enc. 175s Preparing to unpack .../232-r-cran-base64enc_0.1-3-3_arm64.deb ... 175s Unpacking r-cran-base64enc (0.1-3-3) ... 175s Selecting previously unselected package r-cran-digest. 176s Preparing to unpack .../233-r-cran-digest_0.6.34-1_arm64.deb ... 176s Unpacking r-cran-digest (0.6.34-1) ... 176s Selecting previously unselected package r-cran-ellipsis. 176s Preparing to unpack .../234-r-cran-ellipsis_0.3.2-2_arm64.deb ... 176s Unpacking r-cran-ellipsis (0.3.2-2) ... 176s Selecting previously unselected package r-cran-htmltools. 177s Preparing to unpack .../235-r-cran-htmltools_0.5.7-1_arm64.deb ... 177s Unpacking r-cran-htmltools (0.5.7-1) ... 177s Selecting previously unselected package r-cran-evaluate. 178s Preparing to unpack .../236-r-cran-evaluate_0.23-1_all.deb ... 178s Unpacking r-cran-evaluate (0.23-1) ... 178s Selecting previously unselected package r-cran-xfun. 178s Preparing to unpack .../237-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 178s Unpacking r-cran-xfun (0.41+dfsg-1) ... 178s Selecting previously unselected package r-cran-highr. 178s Preparing to unpack .../238-r-cran-highr_0.10+dfsg-1_all.deb ... 178s Unpacking r-cran-highr (0.10+dfsg-1) ... 178s Selecting previously unselected package r-cran-yaml. 178s Preparing to unpack .../239-r-cran-yaml_2.3.8-1_arm64.deb ... 178s Unpacking r-cran-yaml (2.3.8-1) ... 178s Selecting previously unselected package libjs-mathjax. 178s Preparing to unpack .../240-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 178s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 179s Selecting previously unselected package r-cran-knitr. 179s Preparing to unpack .../241-r-cran-knitr_1.45+dfsg-1_all.deb ... 179s Unpacking r-cran-knitr (1.45+dfsg-1) ... 179s Selecting previously unselected package r-cran-jquerylib. 179s Preparing to unpack .../242-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 179s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 179s Selecting previously unselected package r-cran-fs. 179s Preparing to unpack .../243-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 179s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 179s Selecting previously unselected package r-cran-rappdirs. 179s Preparing to unpack .../244-r-cran-rappdirs_0.3.3-1_arm64.deb ... 179s Unpacking r-cran-rappdirs (0.3.3-1) ... 179s Selecting previously unselected package r-cran-sass. 179s Preparing to unpack .../245-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 179s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 179s Selecting previously unselected package r-cran-bslib. 180s Preparing to unpack .../246-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 180s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-fontawesome. 180s Preparing to unpack .../247-r-cran-fontawesome_0.5.2-1_all.deb ... 180s Unpacking r-cran-fontawesome (0.5.2-1) ... 180s Selecting previously unselected package r-cran-tinytex. 180s Preparing to unpack .../248-r-cran-tinytex_0.49-1_all.deb ... 180s Unpacking r-cran-tinytex (0.49-1) ... 180s Selecting previously unselected package libjs-modernizr. 180s Preparing to unpack .../249-libjs-modernizr_2.6.2+ds1-5_all.deb ... 180s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 180s Selecting previously unselected package r-cran-littler. 180s Preparing to unpack .../250-r-cran-littler_0.3.19-1_arm64.deb ... 180s Unpacking r-cran-littler (0.3.19-1) ... 180s Selecting previously unselected package r-cran-pkgkitten. 180s Preparing to unpack .../251-r-cran-pkgkitten_0.2.3-1_all.deb ... 180s Unpacking r-cran-pkgkitten (0.2.3-1) ... 180s Selecting previously unselected package r-cran-rcpp. 180s Preparing to unpack .../252-r-cran-rcpp_1.0.12-1_arm64.deb ... 180s Unpacking r-cran-rcpp (1.0.12-1) ... 180s Selecting previously unselected package r-cran-later. 180s Preparing to unpack .../253-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 180s Unpacking r-cran-later (1.3.2+dfsg-1) ... 180s Selecting previously unselected package r-cran-promises. 180s Preparing to unpack .../254-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 180s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 180s Selecting previously unselected package r-cran-httpuv. 180s Preparing to unpack .../255-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 180s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 180s Selecting previously unselected package r-cran-xtable. 180s Preparing to unpack .../256-r-cran-xtable_1%3a1.8-4-2_all.deb ... 180s Unpacking r-cran-xtable (1:1.8-4-2) ... 180s Selecting previously unselected package r-cran-sourcetools. 181s Preparing to unpack .../257-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 181s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 181s Selecting previously unselected package r-cran-commonmark. 181s Preparing to unpack .../258-r-cran-commonmark_1.9.1-1_arm64.deb ... 181s Unpacking r-cran-commonmark (1.9.1-1) ... 181s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 181s Preparing to unpack .../259-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 181s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 181s Selecting previously unselected package r-cran-shiny. 181s Preparing to unpack .../260-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 181s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-rmarkdown. 181s Preparing to unpack .../261-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 181s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 181s Selecting previously unselected package r-cran-bookdown. 181s Preparing to unpack .../262-r-cran-bookdown_0.37+dfsg-1_all.deb ... 181s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 181s Selecting previously unselected package r-cran-biocmanager. 181s Preparing to unpack .../263-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 181s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 181s Selecting previously unselected package tex-common. 181s Preparing to unpack .../264-tex-common_6.18_all.deb ... 181s Unpacking tex-common (6.18) ... 181s Selecting previously unselected package t1utils. 181s Preparing to unpack .../265-t1utils_1.41-4build2_arm64.deb ... 181s Unpacking t1utils (1.41-4build2) ... 181s Selecting previously unselected package texlive-binaries. 181s Preparing to unpack .../266-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 181s Unpacking texlive-binaries (2023.20230311.66589-9) ... 181s Selecting previously unselected package texlive-base. 181s Preparing to unpack .../267-texlive-base_2023.20240207-1_all.deb ... 181s Unpacking texlive-base (2023.20240207-1) ... 182s Selecting previously unselected package texlive-latex-base. 182s Preparing to unpack .../268-texlive-latex-base_2023.20240207-1_all.deb ... 182s Unpacking texlive-latex-base (2023.20240207-1) ... 183s Selecting previously unselected package texlive-bibtex-extra. 183s Preparing to unpack .../269-texlive-bibtex-extra_2023.20240207-1_all.deb ... 183s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 185s Selecting previously unselected package r-bioc-biocstyle. 185s Preparing to unpack .../270-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 185s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 185s Selecting previously unselected package r-cran-xml. 185s Preparing to unpack .../271-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 185s Unpacking r-cran-xml (3.99-0.16.1-1) ... 185s Selecting previously unselected package r-cran-hms. 185s Preparing to unpack .../272-r-cran-hms_1.1.3-1_all.deb ... 185s Unpacking r-cran-hms (1.1.3-1) ... 185s Selecting previously unselected package r-cran-prettyunits. 185s Preparing to unpack .../273-r-cran-prettyunits_1.2.0-1_all.deb ... 185s Unpacking r-cran-prettyunits (1.2.0-1) ... 186s Selecting previously unselected package r-cran-progress. 186s Preparing to unpack .../274-r-cran-progress_1.2.3-1_all.deb ... 186s Unpacking r-cran-progress (1.2.3-1) ... 186s Selecting previously unselected package r-cran-xml2. 186s Preparing to unpack .../275-r-cran-xml2_1.3.6-1_arm64.deb ... 186s Unpacking r-cran-xml2 (1.3.6-1) ... 186s Selecting previously unselected package r-bioc-biomart. 186s Preparing to unpack .../276-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 186s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 186s Selecting previously unselected package r-bioc-genomicranges. 186s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 186s Selecting previously unselected package r-bioc-rhtslib. 186s Preparing to unpack .../278-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 186s Selecting previously unselected package r-bioc-rsamtools. 186s Preparing to unpack .../279-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 186s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 186s Selecting previously unselected package r-bioc-matrixgenerics. 186s Preparing to unpack .../280-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 186s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 186s Selecting previously unselected package r-cran-lattice. 186s Preparing to unpack .../281-r-cran-lattice_0.22-5-1_arm64.deb ... 186s Unpacking r-cran-lattice (0.22-5-1) ... 186s Selecting previously unselected package r-cran-matrix. 186s Preparing to unpack .../282-r-cran-matrix_1.6-5-1_arm64.deb ... 186s Unpacking r-cran-matrix (1.6-5-1) ... 186s Selecting previously unselected package r-cran-abind. 186s Preparing to unpack .../283-r-cran-abind_1.4-5-2_all.deb ... 186s Unpacking r-cran-abind (1.4-5-2) ... 186s Selecting previously unselected package r-bioc-s4arrays. 186s Preparing to unpack .../284-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 186s Selecting previously unselected package r-bioc-sparsearray. 186s Preparing to unpack .../285-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 186s Selecting previously unselected package r-bioc-delayedarray. 186s Preparing to unpack .../286-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 186s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 186s Selecting previously unselected package r-bioc-summarizedexperiment. 186s Preparing to unpack .../287-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 186s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 186s Selecting previously unselected package r-bioc-genomicalignments. 186s Preparing to unpack .../288-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 186s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 186s Selecting previously unselected package r-cran-rjson. 186s Preparing to unpack .../289-r-cran-rjson_0.2.21-1_arm64.deb ... 186s Unpacking r-cran-rjson (0.2.21-1) ... 187s Selecting previously unselected package r-cran-restfulr. 187s Preparing to unpack .../290-r-cran-restfulr_0.0.15-1_arm64.deb ... 187s Unpacking r-cran-restfulr (0.0.15-1) ... 187s Selecting previously unselected package r-bioc-rtracklayer. 187s Preparing to unpack .../291-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 187s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 187s Selecting previously unselected package r-bioc-bsgenome. 187s Preparing to unpack .../292-r-bioc-bsgenome_1.70.2-1_all.deb ... 187s Unpacking r-bioc-bsgenome (1.70.2-1) ... 187s Selecting previously unselected package r-bioc-dnacopy. 187s Preparing to unpack .../293-r-bioc-dnacopy_1.76.0-1_arm64.deb ... 187s Unpacking r-bioc-dnacopy (1.76.0-1) ... 187s Selecting previously unselected package r-bioc-genomicfeatures. 187s Preparing to unpack .../294-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 187s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 187s Selecting previously unselected package r-bioc-org.hs.eg.db. 187s Preparing to unpack .../295-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 187s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 189s Selecting previously unselected package r-bioc-variantannotation. 189s Preparing to unpack .../296-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 189s Unpacking r-bioc-variantannotation (1.48.1-1) ... 189s Selecting previously unselected package r-cran-rcolorbrewer. 189s Preparing to unpack .../297-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 189s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 189s Selecting previously unselected package r-cran-data.table. 189s Preparing to unpack .../298-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 189s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 189s Selecting previously unselected package r-cran-gtable. 189s Preparing to unpack .../299-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 189s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 189s Selecting previously unselected package r-cran-isoband. 189s Preparing to unpack .../300-r-cran-isoband_0.2.7-1_arm64.deb ... 189s Unpacking r-cran-isoband (0.2.7-1) ... 189s Selecting previously unselected package r-cran-mass. 189s Preparing to unpack .../301-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 189s Unpacking r-cran-mass (7.3-60.0.1-1) ... 189s Selecting previously unselected package r-cran-nlme. 189s Preparing to unpack .../302-r-cran-nlme_3.1.164-1_arm64.deb ... 189s Unpacking r-cran-nlme (3.1.164-1) ... 189s Selecting previously unselected package r-cran-mgcv. 189s Preparing to unpack .../303-r-cran-mgcv_1.9-1-1_arm64.deb ... 189s Unpacking r-cran-mgcv (1.9-1-1) ... 189s Selecting previously unselected package r-cran-farver. 189s Preparing to unpack .../304-r-cran-farver_2.1.1-1_arm64.deb ... 189s Unpacking r-cran-farver (2.1.1-1) ... 189s Selecting previously unselected package r-cran-labeling. 189s Preparing to unpack .../305-r-cran-labeling_0.4.3-1_all.deb ... 189s Unpacking r-cran-labeling (0.4.3-1) ... 189s Selecting previously unselected package r-cran-colorspace. 189s Preparing to unpack .../306-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 189s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 190s Selecting previously unselected package r-cran-munsell. 190s Preparing to unpack .../307-r-cran-munsell_0.5.0-2build1_all.deb ... 190s Unpacking r-cran-munsell (0.5.0-2build1) ... 190s Selecting previously unselected package r-cran-viridislite. 190s Preparing to unpack .../308-r-cran-viridislite_0.4.2-2_all.deb ... 190s Unpacking r-cran-viridislite (0.4.2-2) ... 190s Selecting previously unselected package r-cran-scales. 190s Preparing to unpack .../309-r-cran-scales_1.3.0-1_all.deb ... 190s Unpacking r-cran-scales (1.3.0-1) ... 190s Selecting previously unselected package r-cran-ggplot2. 190s Preparing to unpack .../310-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 190s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 190s Selecting previously unselected package r-cran-gridextra. 190s Preparing to unpack .../311-r-cran-gridextra_2.3-3build1_all.deb ... 190s Unpacking r-cran-gridextra (2.3-3build1) ... 190s Selecting previously unselected package r-cran-vgam. 190s Preparing to unpack .../312-r-cran-vgam_1.1-9-1_arm64.deb ... 190s Unpacking r-cran-vgam (1.1-9-1) ... 190s Selecting previously unselected package r-cran-mclust. 190s Preparing to unpack .../313-r-cran-mclust_6.0.1-1_arm64.deb ... 190s Unpacking r-cran-mclust (6.0.1-1) ... 190s Selecting previously unselected package r-bioc-rhdf5lib. 190s Preparing to unpack .../314-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 190s Selecting previously unselected package r-bioc-rhdf5filters. 190s Preparing to unpack .../315-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 190s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 190s Selecting previously unselected package r-bioc-rhdf5. 190s Preparing to unpack .../316-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 190s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 190s Selecting previously unselected package r-bioc-purecn. 190s Preparing to unpack .../317-r-bioc-purecn_2.8.1+dfsg-1_all.deb ... 190s Unpacking r-bioc-purecn (2.8.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-brio. 191s Preparing to unpack .../318-r-cran-brio_1.1.4-1_arm64.deb ... 191s Unpacking r-cran-brio (1.1.4-1) ... 191s Selecting previously unselected package r-cran-ps. 191s Preparing to unpack .../319-r-cran-ps_1.7.6-1_arm64.deb ... 191s Unpacking r-cran-ps (1.7.6-1) ... 191s Selecting previously unselected package r-cran-processx. 191s Preparing to unpack .../320-r-cran-processx_3.8.3-1_arm64.deb ... 191s Unpacking r-cran-processx (3.8.3-1) ... 191s Selecting previously unselected package r-cran-callr. 191s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 191s Unpacking r-cran-callr (3.7.3-2) ... 191s Selecting previously unselected package r-cran-lazyeval. 191s Preparing to unpack .../322-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 191s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 191s Selecting previously unselected package r-cran-rex. 191s Preparing to unpack .../323-r-cran-rex_1.2.1-1_all.deb ... 191s Unpacking r-cran-rex (1.2.1-1) ... 191s Selecting previously unselected package r-cran-covr. 191s Preparing to unpack .../324-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 191s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 191s Selecting previously unselected package r-cran-desc. 191s Preparing to unpack .../325-r-cran-desc_1.4.3-1_all.deb ... 191s Unpacking r-cran-desc (1.4.3-1) ... 191s Selecting previously unselected package r-cran-diffobj. 191s Preparing to unpack .../326-r-cran-diffobj_0.3.5-1_arm64.deb ... 191s Unpacking r-cran-diffobj (0.3.5-1) ... 191s Selecting previously unselected package r-cran-globals. 191s Preparing to unpack .../327-r-cran-globals_0.16.2-1_all.deb ... 191s Unpacking r-cran-globals (0.16.2-1) ... 191s Selecting previously unselected package r-cran-listenv. 191s Preparing to unpack .../328-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 191s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-parallelly. 191s Preparing to unpack .../329-r-cran-parallelly_1.37.1-1_arm64.deb ... 191s Unpacking r-cran-parallelly (1.37.1-1) ... 191s Selecting previously unselected package r-cran-future. 191s Preparing to unpack .../330-r-cran-future_1.33.1+dfsg-1_all.deb ... 191s Unpacking r-cran-future (1.33.1+dfsg-1) ... 191s Selecting previously unselected package r-cran-getopt. 191s Preparing to unpack .../331-r-cran-getopt_1.20.4-1_all.deb ... 191s Unpacking r-cran-getopt (1.20.4-1) ... 191s Selecting previously unselected package r-cran-markdown. 191s Preparing to unpack .../332-r-cran-markdown_1.12+dfsg-1_all.deb ... 191s Unpacking r-cran-markdown (1.12+dfsg-1) ... 191s Selecting previously unselected package r-cran-optparse. 191s Preparing to unpack .../333-r-cran-optparse_1.7.4-1_all.deb ... 191s Unpacking r-cran-optparse (1.7.4-1) ... 191s Selecting previously unselected package r-cran-pkgbuild. 191s Preparing to unpack .../334-r-cran-pkgbuild_1.4.3-1_all.deb ... 191s Unpacking r-cran-pkgbuild (1.4.3-1) ... 191s Selecting previously unselected package r-cran-rprojroot. 191s Preparing to unpack .../335-r-cran-rprojroot_2.0.4-1_all.deb ... 191s Unpacking r-cran-rprojroot (2.0.4-1) ... 191s Selecting previously unselected package r-cran-pkgload. 191s Preparing to unpack .../336-r-cran-pkgload_1.3.4-1_all.deb ... 191s Unpacking r-cran-pkgload (1.3.4-1) ... 192s Selecting previously unselected package r-cran-praise. 192s Preparing to unpack .../337-r-cran-praise_1.0.0-4build1_all.deb ... 192s Unpacking r-cran-praise (1.0.0-4build1) ... 192s Selecting previously unselected package r-cran-r.cache. 192s Preparing to unpack .../338-r-cran-r.cache_0.16.0-1_all.deb ... 192s Unpacking r-cran-r.cache (0.16.0-1) ... 192s Selecting previously unselected package r-cran-pscbs. 192s Preparing to unpack .../339-r-cran-pscbs_0.66.0-2_all.deb ... 192s Unpacking r-cran-pscbs (0.66.0-2) ... 192s Selecting previously unselected package r-cran-rematch2. 192s Preparing to unpack .../340-r-cran-rematch2_2.1.2-2build1_all.deb ... 192s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 192s Selecting previously unselected package r-cran-waldo. 192s Preparing to unpack .../341-r-cran-waldo_0.5.2-1build1_all.deb ... 192s Unpacking r-cran-waldo (0.5.2-1build1) ... 192s Selecting previously unselected package r-cran-testthat. 192s Preparing to unpack .../342-r-cran-testthat_3.2.1-1_arm64.deb ... 192s Unpacking r-cran-testthat (3.2.1-1) ... 192s Selecting previously unselected package autopkgtest-satdep. 192s Preparing to unpack .../343-1-autopkgtest-satdep.deb ... 192s Unpacking autopkgtest-satdep (0) ... 192s Setting up libjs-json (0~20221030+~1.0.8-1) ... 192s Setting up javascript-common (11+nmu1) ... 192s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 192s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 192s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 192s Setting up libpaper1:arm64 (1.1.29) ... 193s 193s Creating config file /etc/papersize with new version 193s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 193s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 193s Setting up libxpm4:arm64 (1:3.5.17-1) ... 193s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 193s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 193s Setting up libxi6:arm64 (2:1.8.1-1) ... 193s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 193s Setting up libdatrie1:arm64 (0.2.13-3) ... 193s Setting up libjs-popper.js (1.16.1+ds-6) ... 193s Setting up libxcb-render0:arm64 (1.15-1) ... 193s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 193s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 193s Setting up libjs-lunr (2.3.9~dfsg-2) ... 193s Setting up unzip (6.0-28ubuntu3) ... 193s Setting up liblatex-tounicode-perl (0.54-2) ... 193s Setting up x11-common (1:7.7+23ubuntu2) ... 193s Setting up node-html5shiv (3.7.3+dfsg-5) ... 193s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 193s Setting up libdeflate0:arm64 (1.19-1) ... 193s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 193s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 193s Setting up libxcb-shm0:arm64 (1.15-1) ... 193s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 193s Setting up libpaper-utils (1.1.29) ... 193s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 193s Setting up libjs-modernizr (2.6.2+ds1-5) ... 193s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 193s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 193s Setting up libaec0:arm64 (1.1.2-1) ... 193s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 193s Setting up libjs-es5-shim (4.6.7-2) ... 193s Setting up tex-common (6.18) ... 194s update-language: texlive-base not installed and configured, doing nothing! 194s Setting up libio-string-perl (1.08-4) ... 194s Setting up zip (3.0-13) ... 194s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 194s Setting up libblas3:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 194s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 194s Setting up libpkgconf3:arm64 (1.8.1-2) ... 194s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 194s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 194s Setting up t1utils (1.41-4build2) ... 194s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 194s Setting up libjs-d3 (3.5.17-4) ... 194s Setting up fonts-dejavu-mono (2.37-8) ... 194s Setting up libssl-dev:arm64 (3.0.13-0ubuntu1) ... 194s Setting up libmpc3:arm64 (1.3.1-1) ... 194s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 194s Setting up icu-devtools (74.2-1ubuntu1) ... 194s Setting up fonts-dejavu-core (2.37-8) ... 194s Setting up pkgconf-bin (1.8.1-2) ... 194s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 194s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 194s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libwebp7:arm64 (1.3.2-0.4) ... 194s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 194s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 194s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 194s Setting up libnsl-dev:arm64 (1.3.0-3) ... 194s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 194s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libblosc1:arm64 (1.21.5+ds-1) ... 194s Setting up fonts-lmodern (2.005-1) ... 194s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 194s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 194s Setting up libthai-data (0.1.29-2) ... 194s Setting up node-bootstrap-sass (3.4.3-2) ... 194s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 194s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 194s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 194s Setting up pandoc-data (3.1.3-1) ... 194s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 194s Setting up libisl23:arm64 (0.26-3) ... 194s Setting up libc-dev-bin (2.39-0ubuntu2) ... 194s Setting up node-normalize.css (8.0.1-5) ... 194s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 194s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 194s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 194s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libblas-dev:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 194s Setting up libsz2:arm64 (1.1.2-1) ... 194s Setting up dctrl-tools (2.24-3build2) ... 194s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 194s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 194s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 194s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 194s Setting up libpotrace0:arm64 (1.16-2) ... 194s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 194s Setting up libice6:arm64 (2:1.0.10-1build2) ... 194s Setting up liblapack3:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 194s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 194s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 194s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 194s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 194s Setting up libaec-dev:arm64 (1.1.2-1) ... 194s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 194s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 194s Setting up pkgconf:arm64 (1.8.1-2) ... 194s Setting up libthai0:arm64 (0.1.29-2) ... 194s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 194s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 194s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 194s Setting up pandoc (3.1.3+ds-2) ... 194s Setting up libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 194s Setting up liblapack-dev:arm64 (3.12.0-3) ... 194s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 194s Setting up pkg-config:arm64 (1.8.1-2) ... 194s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 194s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 194s Setting up libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 194s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 194s Setting up curl (8.5.0-2ubuntu7) ... 194s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 194s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 194s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 194s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 194s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 194s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 194s Setting up fontconfig (2.15.0-1ubuntu1) ... 196s Regenerating fonts cache... done. 196s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 196s Setting up libxft2:arm64 (2.3.6-1) ... 196s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 196s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 196s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 196s Setting up cpp-13 (13.2.0-17ubuntu2) ... 196s Setting up libtk8.6:arm64 (8.6.13-2) ... 196s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up libreadline-dev:arm64 (8.2-3) ... 196s Setting up libcairo2:arm64 (1.18.0-1) ... 196s Setting up libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 196s Setting up gcc-13 (13.2.0-17ubuntu2) ... 196s Setting up libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 196s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 196s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 196s Setting up cpp (4:13.2.0-7ubuntu1) ... 196s Setting up libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 196s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 196s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 196s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 196s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 196s Setting up g++-13 (13.2.0-17ubuntu2) ... 196s Setting up libxmu6:arm64 (2:1.1.3-3) ... 196s Setting up libpng-dev:arm64 (1.6.43-1) ... 196s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 196s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 196s Setting up libxaw7:arm64 (2:1.0.14-1) ... 196s Setting up gcc (4:13.2.0-7ubuntu1) ... 196s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 196s Setting up r-base-core (4.3.2-1build1) ... 196s 196s Creating config file /etc/R/Renviron with new version 197s Setting up r-cran-crayon (1.5.2-1) ... 197s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 197s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 197s Setting up r-cran-labeling (0.4.3-1) ... 197s Setting up r-cran-sourcetools (0.1.7-1-1) ... 197s Setting up r-cran-futile.options (1.0.1-3build1) ... 197s Setting up r-cran-lattice (0.22-5-1) ... 197s Setting up r-cran-ps (1.7.6-1) ... 197s Setting up r-cran-nlme (3.1.164-1) ... 197s Setting up r-cran-farver (2.1.1-1) ... 197s Setting up r-cran-formatr (1.14-1) ... 197s Setting up r-cran-xml (3.99-0.16.1-1) ... 197s Setting up r-cran-viridislite (0.4.2-2) ... 197s Setting up texlive-binaries (2023.20230311.66589-9) ... 197s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 197s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 197s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Setting up r-cran-lazyeval (0.2.2-1build1) ... 197s Setting up r-cran-commonmark (1.9.1-1) ... 197s Setting up r-cran-r6 (2.5.1-1) ... 197s Setting up r-cran-pkgkitten (0.2.3-1) ... 197s Setting up texlive-base (2023.20240207-1) ... 197s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 197s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 198s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 198s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 198s Setting up r-cran-magrittr (2.0.3-1) ... 198s Setting up r-cran-rappdirs (0.3.3-1) ... 198s Setting up r-cran-filelock (1.0.3-1) ... 198s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 198s Setting up r-cran-littler (0.3.19-1) ... 198s Setting up r-cran-bh (1.84.0-1) ... 198s Setting up r-cran-fs (1.6.3+dfsg-1) ... 198s Setting up r-cran-rcpp (1.0.12-1) ... 198s Setting up r-cran-curl (5.2.0+dfsg-1) ... 198s Setting up r-cran-codetools (0.2-19-1) ... 198s Setting up r-cran-brio (1.1.4-1) ... 198s Setting up r-cran-diffobj (0.3.5-1) ... 198s Setting up r-bioc-biocgenerics (0.48.1-2) ... 198s Setting up r-cran-rlang (1.1.3-1) ... 198s Setting up r-cran-matrixstats (1.2.0-1) ... 198s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 198s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 198s Setting up r-cran-xfun (0.41+dfsg-1) ... 198s Setting up r-cran-vgam (1.1-9-1) ... 198s Setting up r-cran-sys (3.4.2-1) ... 198s Setting up r-cran-plogr (0.2.0-3build1) ... 198s Setting up r-cran-withr (2.5.0-1) ... 198s Setting up r-cran-processx (3.8.3-1) ... 198s Setting up r-cran-mime (0.12-1) ... 198s Setting up r-cran-praise (1.0.0-4build1) ... 198s Setting up r-cran-generics (0.1.3-1) ... 198s Setting up r-cran-base64enc (0.1-3-3) ... 198s Setting up r-cran-abind (1.4-5-2) ... 198s Setting up r-cran-digest (0.6.34-1) ... 198s Setting up r-cran-yaml (2.3.8-1) ... 198s Setting up r-cran-lambda.r (1.2.4-2build1) ... 198s Setting up r-cran-evaluate (0.23-1) ... 198s Setting up r-cran-dbi (1.2.2-1) ... 198s Setting up r-cran-highr (0.10+dfsg-1) ... 198s Setting up r-cran-prettyunits (1.2.0-1) ... 198s Setting up r-cran-fansi (1.0.5-1) ... 198s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 198s Setting up r-cran-mass (7.3-60.0.1-1) ... 198s Setting up r-cran-mclust (6.0.1-1) ... 198s Setting up r-cran-snow (1:0.4.4-2) ... 198s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 198s Setting up r-cran-glue (1.7.0-1) ... 198s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 198s Setting up r-cran-bit (4.0.5-1) ... 198s Setting up r-cran-xtable (1:1.8-4-2) ... 198s Setting up r-cran-cli (3.6.2-1) ... 198s Setting up gfortran (4:13.2.0-7ubuntu1) ... 198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 198s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 198s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 198s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 198s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 198s Setting up r-cran-bitops (1.0-7-1) ... 198s Setting up r-cran-rprojroot (2.0.4-1) ... 198s Setting up r-cran-bit64 (4.0.5-1) ... 198s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 198s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 198s Setting up r-cran-askpass (1.2.0-1) ... 198s Setting up r-cran-fastmap (1.1.1-1) ... 198s Setting up r-cran-png (0.1-8-1) ... 198s Setting up r-cran-r.methodss3 (1.8.2-1) ... 198s Setting up r-bioc-biobase (2.62.0-1) ... 198s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 198s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 198s Setting up r-cran-getopt (1.20.4-1) ... 198s Setting up r-cran-utf8 (1.2.4-1) ... 198s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 198s Setting up r-cran-parallelly (1.37.1-1) ... 198s Setting up r-cran-stringi (1.8.3-1) ... 198s Setting up texlive-latex-base (2023.20240207-1) ... 198s Setting up r-cran-rex (1.2.1-1) ... 198s Setting up r-cran-markdown (1.12+dfsg-1) ... 198s Setting up r-cran-cpp11 (0.4.7-1) ... 198s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 198s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 198s Setting up r-cran-isoband (0.2.7-1) ... 198s Setting up r-cran-futile.logger (1.4.3-4build1) ... 198s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 198s Setting up r-cran-later (1.3.2+dfsg-1) ... 198s Setting up r-cran-matrix (1.6-5-1) ... 198s Setting up r-cran-tinytex (0.49-1) ... 198s Setting up r-cran-knitr (1.45+dfsg-1) ... 198s Setting up r-cran-mgcv (1.9-1-1) ... 198s Setting up g++ (4:13.2.0-7ubuntu1) ... 198s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 198s Setting up r-bioc-dnacopy (1.76.0-1) ... 198s Setting up r-cran-cachem (1.0.8-1) ... 198s Setting up build-essential (12.10ubuntu1) ... 198s Setting up r-bioc-iranges (2.36.0-1) ... 198s Setting up r-cran-rjson (0.2.21-1) ... 198s Setting up r-cran-globals (0.16.2-1) ... 198s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 198s Setting up r-cran-restfulr (0.0.15-1) ... 198s Setting up r-cran-optparse (1.7.4-1) ... 198s Setting up r-cran-vctrs (0.6.5-1) ... 198s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 198s Setting up r-cran-ellipsis (0.3.2-2) ... 198s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 198s Setting up r-base-dev (4.3.2-1build1) ... 198s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 198s Setting up r-cran-stringr (1.5.1-1) ... 198s Setting up r-bioc-biocparallel (1.36.0-1) ... 198s Setting up r-cran-callr (3.7.3-2) ... 198s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 198s Setting up r-cran-desc (1.4.3-1) ... 198s Setting up r-cran-xml2 (1.3.6-1) ... 198s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 198s Setting up r-cran-munsell (0.5.0-2build1) ... 198s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 198s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 198s Setting up r-cran-r.oo (1.26.0-1) ... 198s Setting up r-cran-future (1.33.1+dfsg-1) ... 198s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 198s Setting up texlive-bibtex-extra (2023.20240207-1) ... 198s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 198s Setting up r-cran-httr (1.4.7+dfsg-1) ... 198s Setting up r-cran-gridextra (2.3-3build1) ... 198s Setting up r-cran-hms (1.1.3-1) ... 198s Setting up r-cran-scales (1.3.0-1) ... 198s Setting up r-cran-memoise (2.0.1-1) ... 198s Setting up r-cran-covr (3.6.4+dfsg-1) ... 198s Setting up r-cran-promises (1.2.1+dfsg-1) ... 198s Setting up r-cran-purrr (1.0.2-1) ... 198s Setting up r-cran-blob (1.2.4-1) ... 198s Setting up r-cran-htmltools (0.5.7-1) ... 198s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 198s Setting up r-bioc-xvector (0.42.0-1) ... 198s Setting up r-cran-pkgbuild (1.4.3-1) ... 198s Setting up r-cran-sass (0.4.8+dfsg-1) ... 198s Setting up r-cran-dplyr (1.1.4-1) ... 198s Setting up r-cran-rsqlite (2.3.4-1) ... 198s Setting up r-cran-progress (1.2.3-1) ... 198s Setting up r-cran-pkgload (1.3.4-1) ... 198s Setting up r-cran-r.utils (2.12.3-1) ... 198s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 198s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 198s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 198s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 198s Setting up r-cran-rematch2 (2.1.2-2build1) ... 198s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 198s Setting up r-cran-fontawesome (0.5.2-1) ... 198s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 198s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 198s Setting up r-cran-waldo (0.5.2-1build1) ... 198s Setting up r-cran-tidyr (1.3.1-1) ... 198s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 198s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 198s Setting up r-bioc-aroma.light (3.32.0-1) ... 198s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 198s Setting up r-cran-r.cache (0.16.0-1) ... 198s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 198s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 198s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 198s Setting up r-bioc-annotationdbi (1.64.1-1) ... 198s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 198s Setting up r-cran-testthat (3.2.1-1) ... 198s Setting up r-cran-pscbs (0.66.0-2) ... 198s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 198s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 198s Setting up r-bioc-genomicalignments (1.38.2-1) ... 198s Setting up r-cran-bookdown (0.37+dfsg-1) ... 198s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 198s Setting up r-bioc-rtracklayer (1.62.0-1) ... 198s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 198s Setting up r-bioc-bsgenome (1.70.2-1) ... 198s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 198s Setting up r-bioc-variantannotation (1.48.1-1) ... 198s Setting up r-bioc-purecn (2.8.1+dfsg-1) ... 198s Setting up autopkgtest-satdep (0) ... 198s Processing triggers for man-db (2.12.0-3) ... 199s Processing triggers for install-info (7.1-3) ... 200s Processing triggers for libc-bin (2.39-0ubuntu2) ... 200s Processing triggers for tex-common (6.18) ... 200s Running updmap-sys. This may take some time... done. 200s Running mktexlsr /var/lib/texmf ... done. 200s Building format(s) --all. 237s This may take some time... done. 254s (Reading database ... 129307 files and directories currently installed.) 254s Removing autopkgtest-satdep (0) ... 255s autopkgtest [13:51:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 255s autopkgtest [13:51:03]: test pkg-r-autopkgtest: [----------------------- 255s Test: Try to load the R library PureCN 256s 256s R version 4.3.2 (2023-10-31) -- "Eye Holes" 256s Copyright (C) 2023 The R Foundation for Statistical Computing 256s Platform: aarch64-unknown-linux-gnu (64-bit) 256s 256s R is free software and comes with ABSOLUTELY NO WARRANTY. 256s You are welcome to redistribute it under certain conditions. 256s Type 'license()' or 'licence()' for distribution details. 256s 256s R is a collaborative project with many contributors. 256s Type 'contributors()' for more information and 256s 'citation()' on how to cite R or R packages in publications. 256s 256s Type 'demo()' for some demos, 'help()' for on-line help, or 256s 'help.start()' for an HTML browser interface to help. 256s Type 'q()' to quit R. 256s 256s > library('PureCN') 256s Loading required package: DNAcopy 256s Loading required package: VariantAnnotation 256s Loading required package: BiocGenerics 256s 256s Attaching package: ‘BiocGenerics’ 256s 256s The following objects are masked from ‘package:stats’: 256s 256s IQR, mad, sd, var, xtabs 256s 256s The following objects are masked from ‘package:base’: 256s 256s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 256s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 256s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 256s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 256s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 256s table, tapply, union, unique, unsplit, which.max, which.min 256s 256s Loading required package: MatrixGenerics 256s Loading required package: matrixStats 256s 256s Attaching package: ‘MatrixGenerics’ 256s 256s The following objects are masked from ‘package:matrixStats’: 256s 256s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 256s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 256s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 256s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 256s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 256s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 256s colWeightedMeans, colWeightedMedians, colWeightedSds, 256s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 256s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 256s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 256s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 256s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 256s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 256s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 256s rowWeightedSds, rowWeightedVars 256s 256s Loading required package: GenomeInfoDb 256s Loading required package: S4Vectors 256s Loading required package: stats4 257s 257s Attaching package: ‘S4Vectors’ 257s 257s The following object is masked from ‘package:utils’: 257s 257s findMatches 257s 257s The following objects are masked from ‘package:base’: 257s 257s expand.grid, I, unname 257s 257s Loading required package: IRanges 258s Loading required package: GenomicRanges 258s Loading required package: SummarizedExperiment 258s Loading required package: Biobase 259s Welcome to Bioconductor 259s 259s Vignettes contain introductory material; view with 259s 'browseVignettes()'. To cite Bioconductor, see 259s 'citation("Biobase")', and for packages 'citation("pkgname")'. 259s 259s 259s Attaching package: ‘Biobase’ 259s 259s The following object is masked from ‘package:MatrixGenerics’: 259s 259s rowMedians 259s 259s The following objects are masked from ‘package:matrixStats’: 259s 259s anyMissing, rowMedians 259s 262s Loading required package: Rsamtools 262s Loading required package: Biostrings 262s Loading required package: XVector 262s 262s Attaching package: ‘Biostrings’ 262s 262s The following object is masked from ‘package:base’: 262s 262s strsplit 262s 268s 268s Attaching package: ‘VariantAnnotation’ 268s 268s The following object is masked from ‘package:base’: 268s 268s tabulate 268s 269s Warning message: 269s package ‘Rsamtools’ was built under R version 4.3.3 269s > 269s > 269s Other tests are currently unsupported! 269s They will be progressively added. 269s autopkgtest [13:51:17]: test pkg-r-autopkgtest: -----------------------] 270s pkg-r-autopkgtest PASS 270s autopkgtest [13:51:18]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 270s autopkgtest [13:51:18]: @@@@@@@@@@@@@@@@@@@@ summary 270s pkg-r-autopkgtest PASS 281s Creating nova instance adt-noble-arm64-r-bioc-purecn-20240316-134648-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...