0s autopkgtest [17:38:25]: starting date and time: 2024-03-16 17:38:25+0000 0s autopkgtest [17:38:25]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:38:25]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.y4ele6lp/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-org.hs.eg.db --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-19.secgroup --name adt-noble-arm64-r-bioc-org.hs.eg.db-20240316-173825-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 120s autopkgtest [17:40:25]: testbed dpkg architecture: arm64 120s autopkgtest [17:40:25]: testbed apt version: 2.7.12 120s autopkgtest [17:40:25]: @@@@@@@@@@@@@@@@@@@@ test bed setup 121s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 122s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 123s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 123s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 123s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 123s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 123s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 123s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 123s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 123s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 123s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 123s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 123s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 125s Fetched 9060 kB in 3s (3182 kB/s) 126s Reading package lists... 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s Calculating upgrade... 133s The following packages will be REMOVED: 133s libglib2.0-0 libssl3 133s The following NEW packages will be installed: 133s libglib2.0-0t64 libssl3t64 xdg-user-dirs 133s The following packages have been kept back: 133s curl 133s The following packages will be upgraded: 133s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 133s ubuntu-minimal ubuntu-standard 133s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 133s Need to get 4613 kB of archives. 133s After this operation, 211 kB of additional disk space will be used. 133s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 133s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 133s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 133s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 133s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 133s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 133s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 133s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 133s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 133s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 135s Fetched 4613 kB in 1s (6949 kB/s) 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 136s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 136s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 136s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 136s udisks2 depends on libglib2.0-0 (>= 2.77.0). 136s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 136s python3-gi depends on libglib2.0-0 (>= 2.77.0). 136s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 136s netplan.io depends on libglib2.0-0 (>= 2.70.0). 136s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 136s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 136s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 136s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 136s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 136s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 136s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 136s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 136s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 136s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 136s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 136s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 136s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 136s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 136s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 136s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 136s fwupd depends on libglib2.0-0 (>= 2.79.0). 136s bolt depends on libglib2.0-0 (>= 2.56.0). 136s 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 136s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 136s Selecting previously unselected package libglib2.0-0t64:arm64. 136s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 136s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 136s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 136s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 136s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 137s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 137s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 138s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 138s wget depends on libssl3 (>= 3.0.0). 138s u-boot-tools depends on libssl3 (>= 3.0.0). 138s tnftp depends on libssl3 (>= 3.0.0). 138s tcpdump depends on libssl3 (>= 3.0.0). 138s systemd-resolved depends on libssl3 (>= 3.0.0). 138s systemd depends on libssl3 (>= 3.0.0). 138s sudo depends on libssl3 (>= 3.0.0). 138s sbsigntool depends on libssl3 (>= 3.0.0). 138s rsync depends on libssl3 (>= 3.0.0). 138s python3-cryptography depends on libssl3 (>= 3.0.0). 138s openssh-server depends on libssl3 (>= 3.0.10). 138s openssh-client depends on libssl3 (>= 3.0.10). 138s mtd-utils depends on libssl3 (>= 3.0.0). 138s mokutil depends on libssl3 (>= 3.0.0). 138s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 138s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 138s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 138s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 138s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 138s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 138s libnvme1 depends on libssl3 (>= 3.0.0). 138s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 138s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 138s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 138s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 138s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 138s kmod depends on libssl3 (>= 3.0.0). 138s dhcpcd-base depends on libssl3 (>= 3.0.0). 138s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 138s 138s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 138s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 138s Selecting previously unselected package libssl3t64:arm64. 139s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 139s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 139s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 141s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 141s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 141s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 141s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 141s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 141s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 141s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 141s Unpacking ubuntu-minimal (1.536) over (1.535) ... 141s Selecting previously unselected package xdg-user-dirs. 142s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 142s Unpacking xdg-user-dirs (0.18-1) ... 142s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 142s Unpacking ubuntu-standard (1.536) over (1.535) ... 142s Setting up ubuntu-minimal (1.536) ... 142s Setting up xdg-user-dirs (0.18-1) ... 142s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 142s Setting up libtirpc-common (1.3.4+ds-1.1) ... 142s Setting up ubuntu-standard (1.536) ... 142s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 142s No schema files found: doing nothing. 142s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 142s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 142s Setting up openssl (3.0.13-0ubuntu1) ... 142s Setting up readline-common (8.2-3.1) ... 142s Processing triggers for man-db (2.12.0-3) ... 143s Processing triggers for install-info (7.1-3) ... 143s Processing triggers for libc-bin (2.39-0ubuntu2) ... 143s Reading package lists... 144s Building dependency tree... 144s Reading state information... 145s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 146s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 146s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 146s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 146s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 148s Reading package lists... 148s Reading package lists... 149s Building dependency tree... 149s Reading state information... 149s Calculating upgrade... 150s The following packages have been kept back: 150s curl 150s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 151s Reading package lists... 151s Building dependency tree... 151s Reading state information... 152s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 156s autopkgtest [17:41:01]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 156s autopkgtest [17:41:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-org.hs.eg.db 163s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (dsc) [2180 B] 163s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (tar) [97.9 MB] 163s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-org.hs.eg.db 3.18.0-1 (diff) [5196 B] 164s gpgv: Signature made Mon Dec 4 18:45:07 2023 UTC 164s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 164s gpgv: issuer "tille@debian.org" 164s gpgv: Can't check signature: No public key 164s dpkg-source: warning: cannot verify inline signature for ./r-bioc-org.hs.eg.db_3.18.0-1.dsc: no acceptable signature found 167s autopkgtest [17:41:12]: testing package r-bioc-org.hs.eg.db version 3.18.0-1 168s autopkgtest [17:41:13]: build not needed 184s autopkgtest [17:41:29]: test pkg-r-autopkgtest: preparing testbed 188s Reading package lists... 188s Building dependency tree... 188s Reading state information... 188s Starting pkgProblemResolver with broken count: 0 188s Starting 2 pkgProblemResolver with broken count: 0 188s Done 189s The following additional packages will be installed: 189s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 189s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 189s fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu 189s gcc gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran 189s gfortran-13 gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu 189s icu-devtools libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 189s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 189s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 189s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 189s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 189s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 189s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 189s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 189s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 189s libpng-dev libpng16-16t64 libpsl5t64 libreadline-dev libreadline8t64 189s libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data libthai0 189s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 189s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 189s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 189s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase 189s r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 189s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-org.hs.eg.db 189s r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit 189s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 189s r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-glue r-cran-httr 189s r-cran-jsonlite r-cran-lifecycle r-cran-memoise r-cran-mime r-cran-openssl 189s r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl r-cran-rlang 189s r-cran-rsqlite r-cran-runit r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 189s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 189s Suggested packages: 189s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 189s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 189s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 189s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 189s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 189s r-base-html texlive-base texlive-latex-base texlive-plain-generic 189s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 189s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter 189s r-bioc-go.db r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all 189s r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy 189s r-bioc-deseq2 r-bioc-bsgenome r-bioc-genomicfeatures r-cran-r.utils 189s r-cran-data.table r-bioc-genomicalignments r-cran-markdown 189s r-bioc-summarizedexperiment r-cran-matrix r-bioc-shortread r-cran-testthat 189s r-cran-roxygen2 r-cran-rmarkdown r-cran-ff r-cran-covr r-cran-pillar 189s r-cran-rstudioapi r-cran-rmysql r-cran-digest r-cran-rcpp r-cran-spelling 189s r-cran-plm r-cran-zoo r-cran-survival 189s Recommended packages: 189s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 189s r-doc-html r-cran-testthat r-cran-callr r-cran-covr r-cran-digest 189s r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-mockery 189s r-cran-processx r-cran-ps r-cran-rmarkdown r-cran-rprojroot 189s r-cran-rstudioapi r-cran-tibble r-cran-whoami r-cran-withr r-cran-bench 189s r-cran-brio r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-lobstr 189s r-cran-progress r-cran-scales r-cran-rcpp r-cran-spelling r-cran-later 189s r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-dplyr r-cran-waldo 189s r-cran-jpeg r-cran-readr r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr 189s r-cran-tidyverse r-cran-sodium r-cran-fs r-cran-pillar r-cran-usethis 189s r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms r-cran-rvest r-cran-generics 189s r-cran-pkgdown r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl 189s libx11-protocol-perl x11-utils x11-xserver-utils 189s The following packages will be REMOVED: 189s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 189s The following NEW packages will be installed: 189s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 189s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 189s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 189s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 189s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 189s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 189s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 189s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 189s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 189s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 189s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev 189s liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 189s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 189s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 189s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64 189s libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev 189s libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 189s libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 189s libxss1 libxt6t64 linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf 189s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 189s r-bioc-biobase r-bioc-biocgenerics r-bioc-biostrings r-bioc-genomeinfodb 189s r-bioc-genomeinfodbdata r-bioc-iranges r-bioc-keggrest r-bioc-org.hs.eg.db 189s r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass r-cran-bit 189s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli r-cran-cpp11 189s r-cran-crayon r-cran-curl r-cran-dbi r-cran-fastmap r-cran-glue r-cran-httr 189s r-cran-jsonlite r-cran-lifecycle r-cran-memoise r-cran-mime r-cran-openssl 189s r-cran-pkgconfig r-cran-plogr r-cran-png r-cran-r6 r-cran-rcurl r-cran-rlang 189s r-cran-rsqlite r-cran-runit r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 189s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 189s The following packages will be upgraded: 189s curl 189s 1 upgraded, 155 newly installed, 5 to remove and 0 not upgraded. 189s Need to get 253 MB/253 MB of archives. 189s After this operation, 886 MB of additional disk space will be used. 189s Get:1 /tmp/autopkgtest.mu9Q9V/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 189s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 190s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 190s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 190s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 190s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 190s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 190s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 190s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 190s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 190s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 190s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 190s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 190s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 190s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 190s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 190s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 190s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 190s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 190s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 190s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 190s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 190s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 190s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 190s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 190s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 190s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 190s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 190s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 190s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 191s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 191s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 191s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 191s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 191s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 191s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 191s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 191s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 191s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 191s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 191s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 191s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 191s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 191s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 191s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 191s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 191s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 191s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 191s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 192s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 192s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 192s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 192s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 192s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 192s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 192s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 192s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 192s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 192s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 192s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 192s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 192s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 192s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 192s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 192s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 192s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 192s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 192s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 192s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 192s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 192s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 192s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 192s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 192s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 192s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 192s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 192s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 192s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 192s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 192s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 192s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 192s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 192s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 192s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 192s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 192s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 192s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 192s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 192s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 192s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 192s Get:91 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 192s Get:92 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 192s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 192s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 192s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 192s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 192s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 192s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 192s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 192s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 192s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 192s Get:102 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 193s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 193s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 193s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 193s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 193s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 193s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 193s Get:109 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 194s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 194s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 194s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 194s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 194s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 194s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 194s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 194s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 194s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 194s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 194s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 194s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 194s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 194s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 194s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 194s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 194s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 194s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 194s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 194s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 194s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 195s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 195s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 195s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 195s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 195s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 195s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 195s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 195s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 195s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 195s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 195s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 195s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 195s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 195s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 195s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 195s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 195s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 195s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 195s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 196s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 196s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 196s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 196s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 196s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 196s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 198s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 200s Preconfiguring packages ... 200s Fetched 253 MB in 9s (27.8 MB/s) 200s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 200s wget depends on libpsl5 (>= 0.16.0). 200s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 200s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 200s 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 200s Removing libpsl5:arm64 (0.21.2-1build1) ... 200s Selecting previously unselected package libpsl5t64:arm64. 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 200s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 200s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 200s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 200s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 200s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 200s Selecting previously unselected package libcurl4t64:arm64. 200s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 200s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 200s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 201s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 201s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 201s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 201s 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 201s Removing libpng16-16:arm64 (1.6.43-1) ... 201s Selecting previously unselected package libpng16-16t64:arm64. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 201s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 201s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 201s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 201s parted depends on libreadline8 (>= 6.0). 201s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 201s gpgsm depends on libreadline8 (>= 6.0). 201s gpgconf depends on libreadline8 (>= 6.0). 201s gpg depends on libreadline8 (>= 6.0). 201s gawk depends on libreadline8 (>= 6.0). 201s fdisk depends on libreadline8 (>= 6.0). 201s 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 201s Removing libreadline8:arm64 (8.2-3) ... 201s Selecting previously unselected package libreadline8t64:arm64. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 201s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 201s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 201s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 201s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 201s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 201s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 201s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 201s lsof depends on libtirpc3 (>= 1.0.2). 201s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 201s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 201s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 201s iproute2 depends on libtirpc3 (>= 1.0.2). 201s 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 201s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 201s Selecting previously unselected package libtirpc3t64:arm64. 201s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 201s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 201s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 201s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 201s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 201s Selecting previously unselected package libc-dev-bin. 201s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 201s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 201s Selecting previously unselected package linux-libc-dev:arm64. 201s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 201s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 201s Selecting previously unselected package libcrypt-dev:arm64. 201s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 201s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 201s Selecting previously unselected package libtirpc-dev:arm64. 201s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 201s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 201s Selecting previously unselected package libnsl-dev:arm64. 202s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 202s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 202s Selecting previously unselected package rpcsvc-proto. 202s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 202s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 202s Selecting previously unselected package libc6-dev:arm64. 202s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 202s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 202s Selecting previously unselected package libisl23:arm64. 202s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 202s Unpacking libisl23:arm64 (0.26-3) ... 202s Selecting previously unselected package libmpc3:arm64. 202s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 202s Unpacking libmpc3:arm64 (1.3.1-1) ... 202s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 202s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 202s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 203s Selecting previously unselected package cpp-13. 203s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 203s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 203s Selecting previously unselected package cpp-aarch64-linux-gnu. 203s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 203s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 203s Selecting previously unselected package cpp. 203s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 203s Unpacking cpp (4:13.2.0-7ubuntu1) ... 203s Selecting previously unselected package libcc1-0:arm64. 204s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package libgomp1:arm64. 204s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package libitm1:arm64. 204s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package libatomic1:arm64. 204s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package libasan8:arm64. 204s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package liblsan0:arm64. 204s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 204s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 204s Selecting previously unselected package libtsan2:arm64. 205s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 205s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 205s Selecting previously unselected package libubsan1:arm64. 205s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 205s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 205s Selecting previously unselected package libhwasan0:arm64. 205s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 205s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 205s Selecting previously unselected package libgcc-13-dev:arm64. 205s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 205s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 205s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 205s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 205s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 206s Selecting previously unselected package gcc-13. 206s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 206s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 206s Selecting previously unselected package gcc-aarch64-linux-gnu. 206s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 206s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 206s Selecting previously unselected package gcc. 206s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 206s Unpacking gcc (4:13.2.0-7ubuntu1) ... 206s Selecting previously unselected package libstdc++-13-dev:arm64. 206s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 206s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 206s Selecting previously unselected package g++-13-aarch64-linux-gnu. 206s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 206s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 206s Selecting previously unselected package g++-13. 206s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 206s Unpacking g++-13 (13.2.0-17ubuntu2) ... 206s Selecting previously unselected package g++-aarch64-linux-gnu. 206s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 206s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 206s Selecting previously unselected package g++. 206s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 206s Unpacking g++ (4:13.2.0-7ubuntu1) ... 206s Selecting previously unselected package build-essential. 207s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 207s Unpacking build-essential (12.10ubuntu1) ... 207s Selecting previously unselected package dctrl-tools. 207s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 207s Unpacking dctrl-tools (2.24-3build2) ... 207s Selecting previously unselected package fonts-dejavu-mono. 207s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 207s Unpacking fonts-dejavu-mono (2.37-8) ... 207s Selecting previously unselected package fonts-dejavu-core. 207s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 207s Unpacking fonts-dejavu-core (2.37-8) ... 207s Selecting previously unselected package fontconfig-config. 207s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 207s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 207s Selecting previously unselected package libfontconfig1:arm64. 207s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 207s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 207s Selecting previously unselected package fontconfig. 208s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 208s Unpacking fontconfig (2.15.0-1ubuntu1) ... 208s Selecting previously unselected package libgfortran5:arm64. 208s Preparing to unpack .../040-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 208s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 208s Selecting previously unselected package libgfortran-13-dev:arm64. 208s Preparing to unpack .../041-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 208s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 208s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 208s Preparing to unpack .../042-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 209s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 209s Selecting previously unselected package gfortran-13. 209s Preparing to unpack .../043-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 209s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 209s Selecting previously unselected package gfortran-aarch64-linux-gnu. 209s Preparing to unpack .../044-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 209s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 209s Selecting previously unselected package gfortran. 210s Preparing to unpack .../045-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 210s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 210s Selecting previously unselected package icu-devtools. 210s Preparing to unpack .../046-icu-devtools_74.2-1ubuntu1_arm64.deb ... 210s Unpacking icu-devtools (74.2-1ubuntu1) ... 210s Selecting previously unselected package libblas3:arm64. 210s Preparing to unpack .../047-libblas3_3.12.0-3_arm64.deb ... 210s Unpacking libblas3:arm64 (3.12.0-3) ... 210s Selecting previously unselected package libblas-dev:arm64. 211s Preparing to unpack .../048-libblas-dev_3.12.0-3_arm64.deb ... 211s Unpacking libblas-dev:arm64 (3.12.0-3) ... 211s Selecting previously unselected package libbz2-dev:arm64. 211s Preparing to unpack .../049-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 211s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 211s Selecting previously unselected package libpixman-1-0:arm64. 211s Preparing to unpack .../050-libpixman-1-0_0.42.2-1_arm64.deb ... 211s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 211s Selecting previously unselected package libxcb-render0:arm64. 211s Preparing to unpack .../051-libxcb-render0_1.15-1_arm64.deb ... 211s Unpacking libxcb-render0:arm64 (1.15-1) ... 212s Selecting previously unselected package libxcb-shm0:arm64. 212s Preparing to unpack .../052-libxcb-shm0_1.15-1_arm64.deb ... 212s Unpacking libxcb-shm0:arm64 (1.15-1) ... 212s Selecting previously unselected package libxrender1:arm64. 212s Preparing to unpack .../053-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 212s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 212s Selecting previously unselected package libcairo2:arm64. 212s Preparing to unpack .../054-libcairo2_1.18.0-1_arm64.deb ... 212s Unpacking libcairo2:arm64 (1.18.0-1) ... 212s Selecting previously unselected package libdatrie1:arm64. 213s Preparing to unpack .../055-libdatrie1_0.2.13-3_arm64.deb ... 213s Unpacking libdatrie1:arm64 (0.2.13-3) ... 213s Selecting previously unselected package libdeflate0:arm64. 213s Preparing to unpack .../056-libdeflate0_1.19-1_arm64.deb ... 213s Unpacking libdeflate0:arm64 (1.19-1) ... 213s Selecting previously unselected package libgraphite2-3:arm64. 213s Preparing to unpack .../057-libgraphite2-3_1.3.14-2_arm64.deb ... 213s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 213s Selecting previously unselected package libharfbuzz0b:arm64. 214s Preparing to unpack .../058-libharfbuzz0b_8.3.0-2_arm64.deb ... 214s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 214s Selecting previously unselected package x11-common. 214s Preparing to unpack .../059-x11-common_1%3a7.7+23ubuntu2_all.deb ... 214s Unpacking x11-common (1:7.7+23ubuntu2) ... 214s Selecting previously unselected package libice6:arm64. 214s Preparing to unpack .../060-libice6_2%3a1.0.10-1build2_arm64.deb ... 214s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 214s Selecting previously unselected package libicu-dev:arm64. 214s Preparing to unpack .../061-libicu-dev_74.2-1ubuntu1_arm64.deb ... 214s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 214s Selecting previously unselected package libjpeg-turbo8:arm64. 214s Preparing to unpack .../062-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 214s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 214s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 214s Preparing to unpack .../063-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 214s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 214s Selecting previously unselected package libjpeg8:arm64. 215s Preparing to unpack .../064-libjpeg8_8c-2ubuntu11_arm64.deb ... 215s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 215s Selecting previously unselected package libjpeg8-dev:arm64. 215s Preparing to unpack .../065-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 215s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 215s Selecting previously unselected package libjpeg-dev:arm64. 215s Preparing to unpack .../066-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 215s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 215s Selecting previously unselected package liblapack3:arm64. 215s Preparing to unpack .../067-liblapack3_3.12.0-3_arm64.deb ... 215s Unpacking liblapack3:arm64 (3.12.0-3) ... 215s Selecting previously unselected package liblapack-dev:arm64. 215s Preparing to unpack .../068-liblapack-dev_3.12.0-3_arm64.deb ... 215s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 216s Selecting previously unselected package liblerc4:arm64. 216s Preparing to unpack .../069-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 216s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 216s Selecting previously unselected package libncurses-dev:arm64. 216s Preparing to unpack .../070-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 216s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 216s Selecting previously unselected package libthai-data. 216s Preparing to unpack .../071-libthai-data_0.1.29-2_all.deb ... 216s Unpacking libthai-data (0.1.29-2) ... 216s Selecting previously unselected package libthai0:arm64. 216s Preparing to unpack .../072-libthai0_0.1.29-2_arm64.deb ... 216s Unpacking libthai0:arm64 (0.1.29-2) ... 216s Selecting previously unselected package libpango-1.0-0:arm64. 216s Preparing to unpack .../073-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 216s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 216s Selecting previously unselected package libpangoft2-1.0-0:arm64. 216s Preparing to unpack .../074-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 216s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 216s Selecting previously unselected package libpangocairo-1.0-0:arm64. 216s Preparing to unpack .../075-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 216s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 216s Selecting previously unselected package libpaper1:arm64. 216s Preparing to unpack .../076-libpaper1_1.1.29_arm64.deb ... 216s Unpacking libpaper1:arm64 (1.1.29) ... 216s Selecting previously unselected package libpaper-utils. 216s Preparing to unpack .../077-libpaper-utils_1.1.29_arm64.deb ... 216s Unpacking libpaper-utils (1.1.29) ... 216s Selecting previously unselected package libpcre2-16-0:arm64. 216s Preparing to unpack .../078-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 216s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 216s Selecting previously unselected package libpcre2-32-0:arm64. 216s Preparing to unpack .../079-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 216s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 216s Selecting previously unselected package libpcre2-posix3:arm64. 216s Preparing to unpack .../080-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 216s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 216s Selecting previously unselected package libpcre2-dev:arm64. 216s Preparing to unpack .../081-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 216s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 217s Selecting previously unselected package libpkgconf3:arm64. 217s Preparing to unpack .../082-libpkgconf3_1.8.1-2_arm64.deb ... 217s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 217s Selecting previously unselected package zlib1g-dev:arm64. 217s Preparing to unpack .../083-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 217s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 217s Selecting previously unselected package libpng-dev:arm64. 217s Preparing to unpack .../084-libpng-dev_1.6.43-3_arm64.deb ... 217s Unpacking libpng-dev:arm64 (1.6.43-3) ... 217s Selecting previously unselected package libreadline-dev:arm64. 217s Preparing to unpack .../085-libreadline-dev_8.2-3.1_arm64.deb ... 217s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 217s Selecting previously unselected package libsharpyuv0:arm64. 217s Preparing to unpack .../086-libsharpyuv0_1.3.2-0.4_arm64.deb ... 217s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 217s Selecting previously unselected package libsm6:arm64. 217s Preparing to unpack .../087-libsm6_2%3a1.2.3-1build2_arm64.deb ... 217s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 217s Selecting previously unselected package libtcl8.6:arm64. 217s Preparing to unpack .../088-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 217s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 217s Selecting previously unselected package libjbig0:arm64. 217s Preparing to unpack .../089-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 217s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 217s Selecting previously unselected package libwebp7:arm64. 217s Preparing to unpack .../090-libwebp7_1.3.2-0.4_arm64.deb ... 217s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 217s Selecting previously unselected package libtiff6:arm64. 217s Preparing to unpack .../091-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 217s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 217s Selecting previously unselected package libxft2:arm64. 217s Preparing to unpack .../092-libxft2_2.3.6-1_arm64.deb ... 217s Unpacking libxft2:arm64 (2.3.6-1) ... 217s Selecting previously unselected package libxss1:arm64. 218s Preparing to unpack .../093-libxss1_1%3a1.2.3-1build2_arm64.deb ... 218s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 218s Selecting previously unselected package libtk8.6:arm64. 218s Preparing to unpack .../094-libtk8.6_8.6.13-2_arm64.deb ... 218s Unpacking libtk8.6:arm64 (8.6.13-2) ... 218s Selecting previously unselected package libxt6t64:arm64. 218s Preparing to unpack .../095-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 218s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 218s Selecting previously unselected package pkgconf-bin. 218s Preparing to unpack .../096-pkgconf-bin_1.8.1-2_arm64.deb ... 218s Unpacking pkgconf-bin (1.8.1-2) ... 218s Selecting previously unselected package pkgconf:arm64. 218s Preparing to unpack .../097-pkgconf_1.8.1-2_arm64.deb ... 218s Unpacking pkgconf:arm64 (1.8.1-2) ... 218s Selecting previously unselected package pkg-config:arm64. 218s Preparing to unpack .../098-pkg-config_1.8.1-2_arm64.deb ... 218s Unpacking pkg-config:arm64 (1.8.1-2) ... 218s Selecting previously unselected package zip. 218s Preparing to unpack .../099-zip_3.0-13_arm64.deb ... 218s Unpacking zip (3.0-13) ... 218s Selecting previously unselected package unzip. 218s Preparing to unpack .../100-unzip_6.0-28ubuntu3_arm64.deb ... 218s Unpacking unzip (6.0-28ubuntu3) ... 218s Selecting previously unselected package xdg-utils. 218s Preparing to unpack .../101-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 218s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 218s Selecting previously unselected package r-base-core. 218s Preparing to unpack .../102-r-base-core_4.3.3-2build1_arm64.deb ... 218s Unpacking r-base-core (4.3.3-2build1) ... 219s Selecting previously unselected package liblzma-dev:arm64. 219s Preparing to unpack .../103-liblzma-dev_5.4.5-0.3_arm64.deb ... 219s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 219s Selecting previously unselected package r-base-dev. 219s Preparing to unpack .../104-r-base-dev_4.3.3-2build1_all.deb ... 219s Unpacking r-base-dev (4.3.3-2build1) ... 219s Selecting previously unselected package pkg-r-autopkgtest. 219s Preparing to unpack .../105-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 219s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 219s Selecting previously unselected package r-bioc-biocgenerics. 219s Preparing to unpack .../106-r-bioc-biocgenerics_0.48.1-2_all.deb ... 219s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 219s Selecting previously unselected package r-bioc-biobase. 219s Preparing to unpack .../107-r-bioc-biobase_2.62.0-1_arm64.deb ... 219s Unpacking r-bioc-biobase (2.62.0-1) ... 219s Selecting previously unselected package r-bioc-s4vectors. 219s Preparing to unpack .../108-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 219s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 219s Selecting previously unselected package r-bioc-iranges. 219s Preparing to unpack .../109-r-bioc-iranges_2.36.0-1_arm64.deb ... 219s Unpacking r-bioc-iranges (2.36.0-1) ... 219s Selecting previously unselected package r-cran-dbi. 219s Preparing to unpack .../110-r-cran-dbi_1.2.2-1_all.deb ... 219s Unpacking r-cran-dbi (1.2.2-1) ... 219s Selecting previously unselected package r-cran-bit. 219s Preparing to unpack .../111-r-cran-bit_4.0.5-1_arm64.deb ... 219s Unpacking r-cran-bit (4.0.5-1) ... 219s Selecting previously unselected package r-cran-bit64. 219s Preparing to unpack .../112-r-cran-bit64_4.0.5-1_arm64.deb ... 219s Unpacking r-cran-bit64 (4.0.5-1) ... 220s Selecting previously unselected package r-cran-rlang. 220s Preparing to unpack .../113-r-cran-rlang_1.1.3-1_arm64.deb ... 220s Unpacking r-cran-rlang (1.1.3-1) ... 220s Selecting previously unselected package r-cran-cli. 220s Preparing to unpack .../114-r-cran-cli_3.6.2-1_arm64.deb ... 220s Unpacking r-cran-cli (3.6.2-1) ... 220s Selecting previously unselected package r-cran-glue. 220s Preparing to unpack .../115-r-cran-glue_1.7.0-1_arm64.deb ... 220s Unpacking r-cran-glue (1.7.0-1) ... 220s Selecting previously unselected package r-cran-lifecycle. 220s Preparing to unpack .../116-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 220s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 220s Selecting previously unselected package r-cran-vctrs. 220s Preparing to unpack .../117-r-cran-vctrs_0.6.5-1_arm64.deb ... 220s Unpacking r-cran-vctrs (0.6.5-1) ... 221s Selecting previously unselected package r-cran-blob. 221s Preparing to unpack .../118-r-cran-blob_1.2.4-1_all.deb ... 221s Unpacking r-cran-blob (1.2.4-1) ... 221s Selecting previously unselected package r-cran-fastmap. 221s Preparing to unpack .../119-r-cran-fastmap_1.1.1-1_arm64.deb ... 221s Unpacking r-cran-fastmap (1.1.1-1) ... 221s Selecting previously unselected package r-cran-cachem. 221s Preparing to unpack .../120-r-cran-cachem_1.0.8-1_arm64.deb ... 221s Unpacking r-cran-cachem (1.0.8-1) ... 221s Selecting previously unselected package r-cran-memoise. 221s Preparing to unpack .../121-r-cran-memoise_2.0.1-1_all.deb ... 221s Unpacking r-cran-memoise (2.0.1-1) ... 221s Selecting previously unselected package r-cran-pkgconfig. 221s Preparing to unpack .../122-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 221s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 221s Selecting previously unselected package r-cran-plogr. 221s Preparing to unpack .../123-r-cran-plogr_0.2.0-3build1_all.deb ... 221s Unpacking r-cran-plogr (0.2.0-3build1) ... 222s Selecting previously unselected package r-cran-cpp11. 222s Preparing to unpack .../124-r-cran-cpp11_0.4.7-1_all.deb ... 222s Unpacking r-cran-cpp11 (0.4.7-1) ... 222s Selecting previously unselected package r-cran-rsqlite. 222s Preparing to unpack .../125-r-cran-rsqlite_2.3.4-1_arm64.deb ... 222s Unpacking r-cran-rsqlite (2.3.4-1) ... 222s Selecting previously unselected package r-cran-curl. 222s Preparing to unpack .../126-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 222s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 222s Selecting previously unselected package r-cran-jsonlite. 222s Preparing to unpack .../127-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 222s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 222s Selecting previously unselected package r-cran-mime. 222s Preparing to unpack .../128-r-cran-mime_0.12-1_arm64.deb ... 222s Unpacking r-cran-mime (0.12-1) ... 222s Selecting previously unselected package r-cran-sys. 222s Preparing to unpack .../129-r-cran-sys_3.4.2-1_arm64.deb ... 222s Unpacking r-cran-sys (3.4.2-1) ... 222s Selecting previously unselected package r-cran-askpass. 222s Preparing to unpack .../130-r-cran-askpass_1.2.0-1_arm64.deb ... 222s Unpacking r-cran-askpass (1.2.0-1) ... 222s Selecting previously unselected package r-cran-openssl. 223s Preparing to unpack .../131-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 223s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 223s Selecting previously unselected package r-cran-r6. 223s Preparing to unpack .../132-r-cran-r6_2.5.1-1_all.deb ... 223s Unpacking r-cran-r6 (2.5.1-1) ... 223s Selecting previously unselected package r-cran-httr. 223s Preparing to unpack .../133-r-cran-httr_1.4.7+dfsg-1_all.deb ... 223s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 223s Selecting previously unselected package r-cran-png. 223s Preparing to unpack .../134-r-cran-png_0.1-8-1_arm64.deb ... 223s Unpacking r-cran-png (0.1-8-1) ... 223s Selecting previously unselected package r-bioc-zlibbioc. 223s Preparing to unpack .../135-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 223s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 223s Selecting previously unselected package r-bioc-xvector. 223s Preparing to unpack .../136-r-bioc-xvector_0.42.0-1_arm64.deb ... 223s Unpacking r-bioc-xvector (0.42.0-1) ... 223s Selecting previously unselected package r-cran-bitops. 223s Preparing to unpack .../137-r-cran-bitops_1.0-7-1_arm64.deb ... 223s Unpacking r-cran-bitops (1.0-7-1) ... 223s Selecting previously unselected package r-cran-rcurl. 224s Preparing to unpack .../138-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 224s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 224s Selecting previously unselected package r-bioc-genomeinfodbdata. 224s Preparing to unpack .../139-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 224s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 224s Selecting previously unselected package r-bioc-genomeinfodb. 224s Preparing to unpack .../140-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 224s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 224s Selecting previously unselected package r-cran-crayon. 224s Preparing to unpack .../141-r-cran-crayon_1.5.2-1_all.deb ... 224s Unpacking r-cran-crayon (1.5.2-1) ... 224s Selecting previously unselected package r-bioc-biostrings. 224s Preparing to unpack .../142-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 224s Selecting previously unselected package r-bioc-keggrest. 224s Preparing to unpack .../143-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 224s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 224s Selecting previously unselected package r-bioc-annotationdbi. 224s Preparing to unpack .../144-r-bioc-annotationdbi_1.64.1-1_all.deb ... 224s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 225s Selecting previously unselected package r-cran-xml. 225s Preparing to unpack .../145-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 225s Unpacking r-cran-xml (3.99-0.16.1-1) ... 225s Selecting previously unselected package r-cran-xtable. 225s Preparing to unpack .../146-r-cran-xtable_1%3a1.8-4-2_all.deb ... 225s Unpacking r-cran-xtable (1:1.8-4-2) ... 225s Selecting previously unselected package r-bioc-annotate. 225s Preparing to unpack .../147-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 225s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 225s Selecting previously unselected package r-bioc-org.hs.eg.db. 225s Preparing to unpack .../148-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 225s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 227s Selecting previously unselected package r-cran-runit. 227s Preparing to unpack .../149-r-cran-runit_0.4.32-3_all.deb ... 227s Unpacking r-cran-runit (0.4.32-3) ... 227s Selecting previously unselected package autopkgtest-satdep. 227s Preparing to unpack .../150-1-autopkgtest-satdep.deb ... 227s Unpacking autopkgtest-satdep (0) ... 227s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 227s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 227s Setting up libsharpyuv0:arm64 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r-cran-bit (4.0.5-1) ... 232s Setting up r-cran-xtable (1:1.8-4-2) ... 232s Setting up r-cran-cli (3.6.2-1) ... 232s Setting up gfortran (4:13.2.0-7ubuntu1) ... 232s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 232s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 232s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 232s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 232s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 232s Setting up r-cran-bitops (1.0-7-1) ... 232s Setting up r-cran-bit64 (4.0.5-1) ... 232s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 232s Setting up r-cran-askpass (1.2.0-1) ... 232s Setting up r-cran-fastmap (1.1.1-1) ... 232s Setting up r-cran-png 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(20231212ubuntu1) ... 232s Setting up r-bioc-xvector (0.42.0-1) ... 232s Setting up r-cran-rsqlite (2.3.4-1) ... 232s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 232s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 232s Setting up r-bioc-annotationdbi (1.64.1-1) ... 232s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 232s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 232s Setting up autopkgtest-satdep (0) ... 232s Processing triggers for man-db (2.12.0-3) ... 233s Processing triggers for install-info (7.1-3) ... 233s Processing triggers for libc-bin (2.39-0ubuntu2) ... 241s (Reading database ... 83855 files and directories currently installed.) 241s Removing autopkgtest-satdep (0) ... 243s autopkgtest [17:42:28]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 243s autopkgtest [17:42:28]: test pkg-r-autopkgtest: [----------------------- 243s Test: Try to load the R library org.Hs.eg.db 243s 243s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 243s Copyright (C) 2024 The R Foundation for Statistical Computing 243s Platform: aarch64-unknown-linux-gnu (64-bit) 243s 243s R is free software and comes with ABSOLUTELY NO WARRANTY. 243s You are welcome to redistribute it under certain conditions. 243s Type 'license()' or 'licence()' for distribution details. 243s 243s R is a collaborative project with many contributors. 243s Type 'contributors()' for more information and 243s 'citation()' on how to cite R or R packages in publications. 243s 243s Type 'demo()' for some demos, 'help()' for on-line help, or 243s 'help.start()' for an HTML browser interface to help. 243s Type 'q()' to quit R. 243s 243s > library('org.Hs.eg.db') 243s Loading required package: AnnotationDbi 243s Loading required package: stats4 243s Loading required package: BiocGenerics 244s 244s Attaching package: ‘BiocGenerics’ 244s 244s The following objects are masked from ‘package:stats’: 244s 244s IQR, mad, sd, var, xtabs 244s 244s The following objects are masked from ‘package:base’: 244s 244s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 244s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 244s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 244s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 244s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 244s table, tapply, union, unique, unsplit, which.max, which.min 244s 244s Loading required package: Biobase 244s Welcome to Bioconductor 244s 244s Vignettes contain introductory material; view with 244s 'browseVignettes()'. To cite Bioconductor, see 244s 'citation("Biobase")', and for packages 'citation("pkgname")'. 244s 244s Loading required package: IRanges 244s Loading required package: S4Vectors 244s 244s Attaching package: ‘S4Vectors’ 244s 244s The following object is masked from ‘package:utils’: 244s 244s findMatches 244s 244s The following objects are masked from ‘package:base’: 244s 244s expand.grid, I, unname 244s 247s 247s > 247s > 248s Other tests are currently unsupported! 248s They will be progressively added. 249s autopkgtest [17:42:34]: test pkg-r-autopkgtest: -----------------------] 249s autopkgtest [17:42:34]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 249s pkg-r-autopkgtest PASS 250s autopkgtest [17:42:35]: @@@@@@@@@@@@@@@@@@@@ summary 250s pkg-r-autopkgtest PASS 261s Creating nova instance adt-noble-arm64-r-bioc-org.hs.eg.db-20240316-173825-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...