0s autopkgtest [17:37:41]: starting date and time: 2024-03-16 17:37:41+0000 0s autopkgtest [17:37:41]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:37:41]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.ekc9bewz/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-oligo --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-oligo-20240316-173740-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 160s autopkgtest [17:40:21]: testbed dpkg architecture: arm64 160s autopkgtest [17:40:21]: testbed apt version: 2.7.12 160s autopkgtest [17:40:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 161s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 161s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 161s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 161s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 161s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 162s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 162s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 162s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 162s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 162s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 162s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 162s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 162s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 164s Fetched 9060 kB in 2s (5024 kB/s) 164s Reading package lists... 168s Reading package lists... 168s Building dependency tree... 168s Reading state information... 170s Calculating upgrade... 171s The following packages will be REMOVED: 171s libglib2.0-0 libssl3 171s The following NEW packages will be installed: 171s libglib2.0-0t64 libssl3t64 xdg-user-dirs 171s The following packages have been kept back: 171s curl 171s The following packages will be upgraded: 171s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 171s ubuntu-minimal ubuntu-standard 171s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 171s Need to get 4613 kB of archives. 171s After this operation, 211 kB of additional disk space will be used. 171s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 171s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 172s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 172s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 172s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 172s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 172s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 172s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 172s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 172s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 173s Fetched 4613 kB in 1s (6040 kB/s) 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 173s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 173s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 173s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 173s udisks2 depends on libglib2.0-0 (>= 2.77.0). 173s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 173s python3-gi depends on libglib2.0-0 (>= 2.77.0). 173s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 173s netplan.io depends on libglib2.0-0 (>= 2.70.0). 173s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 173s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 173s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 173s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 173s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 173s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 173s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 173s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 173s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 173s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 173s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 173s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 173s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 173s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 173s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 173s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 173s fwupd depends on libglib2.0-0 (>= 2.79.0). 173s bolt depends on libglib2.0-0 (>= 2.56.0). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 173s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 173s Selecting previously unselected package libglib2.0-0t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 173s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 173s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 173s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 173s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 173s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 173s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 174s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 174s wget depends on libssl3 (>= 3.0.0). 174s u-boot-tools depends on libssl3 (>= 3.0.0). 174s tnftp depends on libssl3 (>= 3.0.0). 174s tcpdump depends on libssl3 (>= 3.0.0). 174s systemd-resolved depends on libssl3 (>= 3.0.0). 174s systemd depends on libssl3 (>= 3.0.0). 174s sudo depends on libssl3 (>= 3.0.0). 174s sbsigntool depends on libssl3 (>= 3.0.0). 174s rsync depends on libssl3 (>= 3.0.0). 174s python3-cryptography depends on libssl3 (>= 3.0.0). 174s openssh-server depends on libssl3 (>= 3.0.10). 174s openssh-client depends on libssl3 (>= 3.0.10). 174s mtd-utils depends on libssl3 (>= 3.0.0). 174s mokutil depends on libssl3 (>= 3.0.0). 174s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 174s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 174s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 174s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 174s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 174s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 174s libnvme1 depends on libssl3 (>= 3.0.0). 174s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 174s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 174s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 174s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 174s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 174s kmod depends on libssl3 (>= 3.0.0). 174s dhcpcd-base depends on libssl3 (>= 3.0.0). 174s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 174s 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 174s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 174s Selecting previously unselected package libssl3t64:arm64. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 174s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 174s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 174s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 174s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 174s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 174s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 174s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 174s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 174s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 174s Unpacking ubuntu-minimal (1.536) over (1.535) ... 174s Selecting previously unselected package xdg-user-dirs. 174s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 174s Unpacking xdg-user-dirs (0.18-1) ... 174s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 174s Unpacking ubuntu-standard (1.536) over (1.535) ... 174s Setting up ubuntu-minimal (1.536) ... 174s Setting up xdg-user-dirs (0.18-1) ... 174s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 174s Setting up libtirpc-common (1.3.4+ds-1.1) ... 174s Setting up ubuntu-standard (1.536) ... 174s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 174s No schema files found: doing nothing. 174s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 174s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 174s Setting up openssl (3.0.13-0ubuntu1) ... 174s Setting up readline-common (8.2-3.1) ... 174s Processing triggers for man-db (2.12.0-3) ... 175s Processing triggers for install-info (7.1-3) ... 175s Processing triggers for libc-bin (2.39-0ubuntu2) ... 176s Reading package lists... 177s Building dependency tree... 177s Reading state information... 178s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 179s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 179s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 179s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 179s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 182s Reading package lists... 182s Reading package lists... 182s Building dependency tree... 182s Reading state information... 183s Calculating upgrade... 183s The following packages have been kept back: 183s curl 183s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 184s Reading package lists... 184s Building dependency tree... 184s Reading state information... 185s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 188s autopkgtest [17:40:49]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 188s autopkgtest [17:40:49]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-oligo 191s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligo 1.66.0+ds-1 (dsc) [2251 B] 191s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligo 1.66.0+ds-1 (tar) [175 kB] 191s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-oligo 1.66.0+ds-1 (diff) [4296 B] 191s gpgv: Signature made Thu Nov 30 17:02:07 2023 UTC 191s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 191s gpgv: issuer "tille@debian.org" 191s gpgv: Can't check signature: No public key 191s dpkg-source: warning: cannot verify inline signature for ./r-bioc-oligo_1.66.0+ds-1.dsc: no acceptable signature found 192s autopkgtest [17:40:53]: testing package r-bioc-oligo version 1.66.0+ds-1 192s autopkgtest [17:40:53]: build not needed 194s autopkgtest [17:40:55]: test pkg-r-autopkgtest: preparing testbed 199s Reading package lists... 199s Building dependency tree... 199s Reading state information... 200s Starting pkgProblemResolver with broken count: 0 200s Starting 2 pkgProblemResolver with broken count: 0 200s Done 201s The following additional packages will be installed: 201s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 201s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 201s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 201s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 201s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 201s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 201s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 201s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev 201s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 201s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 201s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 201s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 201s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 201s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 201s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 201s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 201s libjs-popper.js libjs-prettify libjs-sifter.js 201s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 201s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 201s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 201s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 201s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 201s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 201s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 201s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 201s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 201s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 201s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 201s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 201s pkgconf-bin r-base-core r-base-dev r-bioc-affxparser r-bioc-affyio 201s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 201s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 201s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 201s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 201s r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo r-bioc-oligoclasses 201s r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 201s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 201s r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 201s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 201s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 201s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr 201s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-ff 201s r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-generics 201s r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 201s r-cran-httr r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 201s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 201s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 201s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 201s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 201s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang 201s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 201s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 201s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 201s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 201s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 201s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 201s x11-common xdg-utils zip zlib1g-dev 201s Suggested packages: 201s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 201s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 201s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 201s | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs 201s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 201s readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 201s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 201s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 201s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 201s r-base-html texlive-plain-generic texlive-fonts-recommended 201s texlive-fonts-extra texlive-extra-utils texinfo r-cran-r.oo r-cran-r.utils 201s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 201s r-bioc-rtracklayer r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-mockery 201s r-cran-webmockr r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-biocparallel 201s r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats r-cran-class 201s r-cran-data.table r-bioc-genomicalignments r-bioc-gviz 201s r-bioc-variantannotation r-bioc-annotationhub r-bioc-dexseq r-bioc-edger 201s r-cran-markdown r-cran-biasedurn r-cran-ellipse r-cran-gplots r-cran-locfit 201s r-cran-mass r-bioc-sparsematrixstats r-bioc-shortread r-bioc-rhdf5 201s r-cran-roxygen2 r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 201s r-cran-getopt r-cran-formattable r-cran-ggplot2 r-cran-nanotime 201s r-cran-palmerpenguins r-cran-scales r-cran-units r-cran-vdiffr r-cran-inline 201s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 201s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 201s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 201s hintview texlive-latex-base-doc wp2latex 201s Recommended packages: 201s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 201s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 201s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 201s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 201s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 201s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 201s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 201s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 201s r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo 201s r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf 201s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 201s r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 201s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 201s r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 201s r-cran-gh r-cran-rvest r-cran-data.table r-cran-mockr r-cran-formattable 201s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 201s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 201s x11-xserver-utils 201s The following packages will be REMOVED: 201s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 201s The following NEW packages will be installed: 201s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 201s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 201s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 201s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 201s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 201s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 201s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 201s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 201s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 201s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 201s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 201s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 201s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 201s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 201s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 201s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 201s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 201s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 201s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 201s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 201s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 201s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 201s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 201s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 201s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 201s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 201s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 201s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 201s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 201s pkgconf-bin r-base-core r-base-dev r-bioc-affxparser r-bioc-affyio 201s r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache 201s r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings 201s r-bioc-delayedarray r-bioc-genefilter r-bioc-genomeinfodb 201s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 201s r-bioc-limma r-bioc-matrixgenerics r-bioc-oligo r-bioc-oligoclasses 201s r-bioc-preprocesscore r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 201s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 201s r-cran-askpass r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 201s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem 201s r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon 201s r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr 201s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-ff 201s r-cran-filelock r-cran-fontawesome r-cran-foreach r-cran-fs r-cran-generics 201s r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv 201s r-cran-httr r-cran-iterators r-cran-jquerylib r-cran-jsonlite r-cran-knitr 201s r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr 201s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 201s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 201s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 201s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-rlang 201s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 201s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 201s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 201s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 201s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 201s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 201s x11-common xdg-utils zip zlib1g-dev 201s The following packages will be upgraded: 201s curl 201s 1 upgraded, 278 newly installed, 5 to remove and 0 not upgraded. 201s Need to get 400 MB/400 MB of archives. 201s After this operation, 1162 MB of additional disk space will be used. 201s Get:1 /tmp/autopkgtest.cbW7GG/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [788 B] 202s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 202s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 202s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 202s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 202s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 202s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 202s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 202s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 202s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 202s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 202s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 202s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 202s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 202s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 202s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 202s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 202s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 202s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 202s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 202s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 202s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 202s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 202s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 202s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 202s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 202s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 202s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 203s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 203s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 203s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 203s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 203s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 203s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 203s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 203s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 203s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 203s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 203s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 203s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 203s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 203s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 203s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 203s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 203s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 203s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 204s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 204s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 204s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 204s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 204s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 204s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 204s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 204s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 204s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 204s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 204s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 204s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 204s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 204s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 204s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 204s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 204s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 204s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 204s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 204s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 204s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 204s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 204s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 204s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 204s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 204s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 204s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 204s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 204s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 204s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 204s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 204s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 204s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 204s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 204s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 204s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 204s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 204s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 204s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 204s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 204s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 204s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 204s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 204s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 204s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 204s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 204s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 205s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 205s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 205s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 205s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 205s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 205s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 205s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 205s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 205s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 205s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 205s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 205s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 205s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 205s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 205s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 205s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 205s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 205s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 205s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 205s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 205s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 205s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 205s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 205s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 205s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 205s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 205s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 205s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 205s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 205s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 205s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 205s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 206s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 206s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 206s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 206s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 206s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 206s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 206s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 206s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 206s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 206s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 206s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 206s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 206s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 206s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 206s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 206s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 207s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 207s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 207s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 207s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 207s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 207s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 207s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 208s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 208s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 208s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 208s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 208s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 208s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 208s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 208s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affxparser arm64 1.74.0-1 [993 kB] 208s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 208s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-affyio arm64 1.72.0-1 [87.1 kB] 208s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 208s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 208s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 208s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 208s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 208s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 208s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 208s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 208s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 208s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 208s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 208s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 208s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 208s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 208s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 208s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 208s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 208s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 208s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 208s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 208s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 208s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 208s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 208s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 208s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 208s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 208s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 208s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 208s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 208s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 208s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 208s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 209s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 209s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 209s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 209s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 209s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 210s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 210s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 210s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 210s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 210s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 210s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 210s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 210s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 210s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 210s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 210s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 210s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 210s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 210s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 210s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 210s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 210s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 211s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 211s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 211s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 211s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 211s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 211s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 211s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 211s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 211s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 211s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 211s Get:223 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 211s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 211s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 211s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 211s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 211s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 211s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 211s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 211s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 211s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 211s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 211s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 211s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 211s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 211s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 211s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 211s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 211s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 211s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 211s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 211s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 211s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 211s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 211s Get:246 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 211s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 212s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 213s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 213s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 215s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 215s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 215s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 215s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 215s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 216s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 216s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 216s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 216s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 216s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 216s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 216s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 216s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 216s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 216s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 216s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 216s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 216s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 216s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 216s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 216s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 216s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-iterators all 1.0.14-1 [336 kB] 216s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreach all 1.5.2-1 [124 kB] 216s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ff arm64 4.0.12+ds-1 [969 kB] 216s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-oligoclasses all 1.64.0-1 [1257 kB] 216s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-preprocesscore arm64 1.64.0+ds-1 [147 kB] 216s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-oligo arm64 1.66.0+ds-1 [922 kB] 216s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 216s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 218s Preconfiguring packages ... 218s Fetched 400 MB in 15s (26.1 MB/s) 218s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 218s wget depends on libpsl5 (>= 0.16.0). 218s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 218s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 218s 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 218s Removing libpsl5:arm64 (0.21.2-1build1) ... 218s Selecting previously unselected package libpsl5t64:arm64. 218s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 218s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 218s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 218s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 218s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 219s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 219s Selecting previously unselected package libcurl4t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 219s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 219s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 219s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 219s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 219s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 219s 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 219s Removing libpng16-16:arm64 (1.6.43-1) ... 219s Selecting previously unselected package libpng16-16t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 219s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 219s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 219s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 219s parted depends on libreadline8 (>= 6.0). 219s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 219s gpgsm depends on libreadline8 (>= 6.0). 219s gpgconf depends on libreadline8 (>= 6.0). 219s gpg depends on libreadline8 (>= 6.0). 219s gawk depends on libreadline8 (>= 6.0). 219s fdisk depends on libreadline8 (>= 6.0). 219s 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 219s Removing libreadline8:arm64 (8.2-3) ... 219s Selecting previously unselected package libreadline8t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 219s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 219s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 219s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 219s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 219s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 219s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 219s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 219s lsof depends on libtirpc3 (>= 1.0.2). 219s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 219s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 219s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 219s iproute2 depends on libtirpc3 (>= 1.0.2). 219s 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 219s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 219s Selecting previously unselected package libtirpc3t64:arm64. 219s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 219s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 219s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 219s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 219s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 219s Selecting previously unselected package libc-dev-bin. 219s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 219s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 219s Selecting previously unselected package linux-libc-dev:arm64. 219s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 219s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 219s Selecting previously unselected package libcrypt-dev:arm64. 219s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 219s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 219s Selecting previously unselected package libtirpc-dev:arm64. 219s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 219s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 219s Selecting previously unselected package libnsl-dev:arm64. 219s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 219s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 219s Selecting previously unselected package rpcsvc-proto. 219s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 219s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 219s Selecting previously unselected package libc6-dev:arm64. 219s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 219s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 219s Selecting previously unselected package libisl23:arm64. 220s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 220s Unpacking libisl23:arm64 (0.26-3) ... 220s Selecting previously unselected package libmpc3:arm64. 220s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 220s Unpacking libmpc3:arm64 (1.3.1-1) ... 220s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 220s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 220s Selecting previously unselected package cpp-13. 220s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 220s Selecting previously unselected package cpp-aarch64-linux-gnu. 220s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 220s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 220s Selecting previously unselected package cpp. 220s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 220s Unpacking cpp (4:13.2.0-7ubuntu1) ... 220s Selecting previously unselected package libcc1-0:arm64. 220s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libgomp1:arm64. 220s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libitm1:arm64. 220s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libatomic1:arm64. 220s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libasan8:arm64. 220s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package liblsan0:arm64. 220s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libtsan2:arm64. 220s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libubsan1:arm64. 220s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libhwasan0:arm64. 220s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 220s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 220s Selecting previously unselected package libgcc-13-dev:arm64. 220s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 220s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 220s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 220s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package gcc-13. 221s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package gcc-aarch64-linux-gnu. 221s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package gcc. 221s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking gcc (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package libstdc++-13-dev:arm64. 221s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package g++-13-aarch64-linux-gnu. 221s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package g++-13. 221s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 221s Unpacking g++-13 (13.2.0-17ubuntu2) ... 221s Selecting previously unselected package g++-aarch64-linux-gnu. 221s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package g++. 221s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 221s Unpacking g++ (4:13.2.0-7ubuntu1) ... 221s Selecting previously unselected package build-essential. 221s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 221s Unpacking build-essential (12.10ubuntu1) ... 221s Selecting previously unselected package dctrl-tools. 221s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 221s Unpacking dctrl-tools (2.24-3build2) ... 221s Selecting previously unselected package fonts-dejavu-mono. 222s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 222s Unpacking fonts-dejavu-mono (2.37-8) ... 222s Selecting previously unselected package fonts-dejavu-core. 222s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 222s Unpacking fonts-dejavu-core (2.37-8) ... 222s Selecting previously unselected package fontconfig-config. 222s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 222s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 222s Selecting previously unselected package libfontconfig1:arm64. 222s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 222s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 222s Selecting previously unselected package fontconfig. 222s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 222s Unpacking fontconfig (2.15.0-1ubuntu1) ... 222s Selecting previously unselected package fonts-font-awesome. 222s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 222s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 222s Selecting previously unselected package fonts-glyphicons-halflings. 222s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 222s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 222s Selecting previously unselected package fonts-lmodern. 222s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 222s Unpacking fonts-lmodern (2.005-1) ... 222s Selecting previously unselected package fonts-mathjax. 222s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 222s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 222s Selecting previously unselected package libgfortran5:arm64. 222s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 222s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 222s Selecting previously unselected package libgfortran-13-dev:arm64. 222s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 222s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 222s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 222s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gfortran-13. 223s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package gfortran-aarch64-linux-gnu. 223s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package gfortran. 223s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 223s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 223s Selecting previously unselected package icu-devtools. 223s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 223s Unpacking icu-devtools (74.2-1ubuntu1) ... 223s Selecting previously unselected package javascript-common. 223s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 223s Unpacking javascript-common (11+nmu1) ... 223s Selecting previously unselected package libio-string-perl. 223s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 223s Unpacking libio-string-perl (1.08-4) ... 223s Selecting previously unselected package liblatex-tounicode-perl. 223s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 223s Unpacking liblatex-tounicode-perl (0.54-2) ... 223s Selecting previously unselected package libbibtex-parser-perl. 223s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 223s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 223s Selecting previously unselected package libblas3:arm64. 223s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 223s Unpacking libblas3:arm64 (3.12.0-3) ... 223s Selecting previously unselected package libblas-dev:arm64. 223s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 223s Unpacking libblas-dev:arm64 (3.12.0-3) ... 223s Selecting previously unselected package libbz2-dev:arm64. 223s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_arm64.deb 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unselected package libdatrie1:arm64. 223s Preparing to unpack .../063-libdatrie1_0.2.13-3_arm64.deb ... 223s Unpacking libdatrie1:arm64 (0.2.13-3) ... 223s Selecting previously unselected package libdeflate0:arm64. 223s Preparing to unpack .../064-libdeflate0_1.19-1_arm64.deb ... 223s Unpacking libdeflate0:arm64 (1.19-1) ... 223s Selecting previously unselected package libgraphite2-3:arm64. 223s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_arm64.deb ... 223s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 223s Selecting previously unselected package libharfbuzz0b:arm64. 223s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_arm64.deb ... 223s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 223s Selecting previously unselected package x11-common. 223s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 223s Unpacking x11-common (1:7.7+23ubuntu2) ... 223s Selecting previously unselected package libice6:arm64. 223s Preparing to unpack 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(3.5.17-4) ... 224s Selecting previously unselected package libjs-es5-shim. 224s Preparing to unpack .../079-libjs-es5-shim_4.6.7-2_all.deb ... 224s Unpacking libjs-es5-shim (4.6.7-2) ... 224s Selecting previously unselected package libjs-highlight.js. 224s Preparing to unpack .../080-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 224s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 224s Selecting previously unselected package libjs-jquery. 224s Preparing to unpack .../081-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 224s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 224s Selecting previously unselected package libjs-jquery-datatables. 224s Preparing to unpack .../082-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 224s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 224s Selecting previously unselected package libjs-sifter.js. 224s Preparing to unpack .../083-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 224s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 224s Selecting previously unselected package libjs-microplugin.js. 224s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 224s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 224s Selecting previously unselected package libjs-jquery-selectize.js. 224s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 224s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 224s Selecting previously unselected package libjs-jquery-ui. 224s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 224s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 224s Selecting previously unselected package libjs-json. 224s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 224s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 224s Selecting previously unselected package libjs-lunr. 224s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 224s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 225s Selecting previously unselected package libjs-prettify. 225s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 225s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 225s Selecting previously unselected package libkpathsea6:arm64. 225s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 225s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 225s Selecting previously unselected package liblapack3:arm64. 225s Preparing to unpack .../091-liblapack3_3.12.0-3_arm64.deb ... 225s Unpacking liblapack3:arm64 (3.12.0-3) ... 225s Selecting previously unselected package liblapack-dev:arm64. 225s Preparing to unpack .../092-liblapack-dev_3.12.0-3_arm64.deb ... 225s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 225s Selecting previously unselected package liblerc4:arm64. 225s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 225s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 225s Selecting previously unselected package liblua5.4-0:arm64. 225s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_arm64.deb ... 225s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 225s Selecting previously unselected package libncurses-dev:arm64. 225s Preparing to unpack .../095-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 225s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 225s Selecting previously unselected package libthai-data. 225s Preparing to unpack .../096-libthai-data_0.1.29-2_all.deb ... 225s Unpacking libthai-data (0.1.29-2) ... 225s Selecting previously unselected package libthai0:arm64. 225s Preparing to unpack .../097-libthai0_0.1.29-2_arm64.deb ... 225s Unpacking libthai0:arm64 (0.1.29-2) ... 225s Selecting previously unselected package libpango-1.0-0:arm64. 225s Preparing to unpack .../098-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 225s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 225s Selecting previously unselected package libpangoft2-1.0-0:arm64. 225s Preparing to unpack .../099-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 225s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 225s Selecting previously unselected package libpangocairo-1.0-0:arm64. 225s Preparing to unpack .../100-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 225s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 225s Selecting previously unselected package libpaper1:arm64. 225s Preparing to unpack .../101-libpaper1_1.1.29_arm64.deb ... 225s Unpacking libpaper1:arm64 (1.1.29) ... 225s Selecting previously unselected package libpaper-utils. 225s Preparing to unpack .../102-libpaper-utils_1.1.29_arm64.deb ... 225s Unpacking libpaper-utils (1.1.29) ... 225s Selecting previously unselected package libpcre2-16-0:arm64. 225s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 225s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 225s Selecting previously unselected package libpcre2-32-0:arm64. 225s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 225s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 225s Selecting previously unselected package libpcre2-posix3:arm64. 225s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 225s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 225s Selecting previously unselected package libpcre2-dev:arm64. 225s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 225s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 225s Selecting previously unselected package libpkgconf3:arm64. 225s Preparing to unpack .../107-libpkgconf3_1.8.1-2_arm64.deb ... 225s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 225s Selecting previously unselected package zlib1g-dev:arm64. 225s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 225s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 225s Selecting previously unselected package libpng-dev:arm64. 225s Preparing to unpack .../109-libpng-dev_1.6.43-3_arm64.deb ... 225s Unpacking libpng-dev:arm64 (1.6.43-3) ... 225s Selecting previously unselected package libpotrace0:arm64. 225s Preparing to unpack .../110-libpotrace0_1.16-2_arm64.deb ... 225s Unpacking libpotrace0:arm64 (1.16-2) ... 225s Selecting previously unselected package libptexenc1:arm64. 225s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_arm64.deb ... 225s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 225s Selecting previously unselected package libreadline-dev:arm64. 225s Preparing to unpack .../112-libreadline-dev_8.2-3.1_arm64.deb ... 225s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 225s Selecting previously unselected package libsharpyuv0:arm64. 225s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_arm64.deb ... 225s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 225s Selecting previously unselected package libsm6:arm64. 225s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_arm64.deb ... 225s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 226s Selecting previously unselected package libsynctex2:arm64. 226s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_arm64.deb ... 226s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 226s Selecting previously unselected package libtcl8.6:arm64. 226s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 226s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 226s Selecting previously unselected package libteckit0:arm64. 226s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_arm64.deb ... 226s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 226s Selecting previously unselected package libtexlua53-5:arm64. 226s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 226s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 226s Selecting previously unselected package libjbig0:arm64. 226s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 226s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 226s Selecting previously unselected package libwebp7:arm64. 226s Preparing to unpack .../120-libwebp7_1.3.2-0.4_arm64.deb ... 226s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 226s Selecting previously unselected package libtiff6:arm64. 226s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 226s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 226s Selecting previously unselected package libxft2:arm64. 226s Preparing to unpack .../122-libxft2_2.3.6-1_arm64.deb ... 226s Unpacking libxft2:arm64 (2.3.6-1) ... 226s Selecting previously unselected package libxss1:arm64. 226s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_arm64.deb ... 226s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 226s Selecting previously unselected package libtk8.6:arm64. 226s Preparing to unpack .../124-libtk8.6_8.6.13-2_arm64.deb ... 226s Unpacking libtk8.6:arm64 (8.6.13-2) ... 226s Selecting previously unselected package libxt6t64:arm64. 226s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 226s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 226s Selecting previously unselected package libxmu6:arm64. 226s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_arm64.deb ... 226s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 226s Selecting previously unselected package libxpm4:arm64. 226s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_arm64.deb ... 226s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 226s Selecting previously unselected package libxaw7:arm64. 226s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_arm64.deb ... 226s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 226s Selecting previously unselected package libxi6:arm64. 226s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_arm64.deb ... 226s Unpacking libxi6:arm64 (2:1.8.1-1) ... 226s Selecting previously unselected package libzzip-0-13:arm64. 226s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 226s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 226s Selecting previously unselected package zip. 226s Preparing to unpack .../131-zip_3.0-13_arm64.deb ... 226s Unpacking zip (3.0-13) ... 226s Selecting previously unselected package unzip. 226s Preparing to unpack .../132-unzip_6.0-28ubuntu3_arm64.deb ... 226s Unpacking unzip (6.0-28ubuntu3) ... 226s Selecting previously unselected package xdg-utils. 226s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 226s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 226s Selecting previously unselected package r-base-core. 226s Preparing to unpack .../134-r-base-core_4.3.3-2build1_arm64.deb ... 226s Unpacking r-base-core (4.3.3-2build1) ... 227s Selecting previously unselected package r-cran-littler. 227s Preparing to unpack .../135-r-cran-littler_0.3.19-1_arm64.deb ... 227s Unpacking r-cran-littler (0.3.19-1) ... 227s Selecting previously unselected package littler. 227s Preparing to unpack .../136-littler_0.3.19-1_all.deb ... 227s Unpacking littler (0.3.19-1) ... 227s Selecting previously unselected package node-bootstrap-sass. 227s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 227s Unpacking node-bootstrap-sass (3.4.3-2) ... 227s Selecting previously unselected package node-html5shiv. 227s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 227s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 227s Selecting previously unselected package node-normalize.css. 227s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 227s Unpacking node-normalize.css (8.0.1-5) ... 227s Selecting previously unselected package pandoc-data. 227s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ... 227s Unpacking pandoc-data (3.1.3-1) ... 227s Selecting previously unselected package pandoc. 227s Preparing to unpack .../141-pandoc_3.1.3+ds-2_arm64.deb ... 227s Unpacking pandoc (3.1.3+ds-2) ... 228s Selecting previously unselected package pkgconf-bin. 228s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_arm64.deb ... 228s Unpacking pkgconf-bin (1.8.1-2) ... 228s Selecting previously unselected package pkgconf:arm64. 228s Preparing to unpack .../143-pkgconf_1.8.1-2_arm64.deb ... 228s Unpacking pkgconf:arm64 (1.8.1-2) ... 228s Selecting previously unselected package pkg-config:arm64. 228s Preparing to unpack .../144-pkg-config_1.8.1-2_arm64.deb ... 228s Unpacking pkg-config:arm64 (1.8.1-2) ... 228s Selecting previously unselected package liblzma-dev:arm64. 228s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 228s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 228s Selecting previously unselected package r-base-dev. 228s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 228s Unpacking r-base-dev (4.3.3-2build1) ... 228s Selecting previously unselected package pkg-r-autopkgtest. 228s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 228s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 228s Selecting previously unselected package r-bioc-biocgenerics. 228s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 228s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 228s Selecting previously unselected package r-bioc-affxparser. 228s Preparing to unpack .../149-r-bioc-affxparser_1.74.0-1_arm64.deb ... 228s Unpacking r-bioc-affxparser (1.74.0-1) ... 228s Selecting previously unselected package r-bioc-zlibbioc. 228s Preparing to unpack .../150-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 228s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 228s Selecting previously unselected package r-bioc-affyio. 228s Preparing to unpack .../151-r-bioc-affyio_1.72.0-1_arm64.deb ... 228s Unpacking r-bioc-affyio (1.72.0-1) ... 228s Selecting previously unselected package r-bioc-biobase. 228s Preparing to unpack .../152-r-bioc-biobase_2.62.0-1_arm64.deb ... 228s Unpacking r-bioc-biobase (2.62.0-1) ... 228s Selecting previously unselected package r-bioc-s4vectors. 228s Preparing to unpack .../153-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 228s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 228s Selecting previously unselected package r-bioc-iranges. 228s Preparing to unpack .../154-r-bioc-iranges_2.36.0-1_arm64.deb ... 228s Unpacking r-bioc-iranges (2.36.0-1) ... 228s Selecting previously unselected package r-cran-dbi. 228s Preparing to unpack .../155-r-cran-dbi_1.2.2-1_all.deb ... 228s Unpacking r-cran-dbi (1.2.2-1) ... 228s Selecting previously unselected package r-cran-bit. 228s Preparing to unpack .../156-r-cran-bit_4.0.5-1_arm64.deb ... 228s Unpacking r-cran-bit (4.0.5-1) ... 228s Selecting previously unselected package r-cran-bit64. 228s Preparing to unpack .../157-r-cran-bit64_4.0.5-1_arm64.deb ... 228s Unpacking r-cran-bit64 (4.0.5-1) ... 229s Selecting previously unselected package r-cran-rlang. 229s Preparing to unpack .../158-r-cran-rlang_1.1.3-1_arm64.deb ... 229s Unpacking r-cran-rlang (1.1.3-1) ... 229s Selecting previously unselected package r-cran-cli. 229s Preparing to unpack .../159-r-cran-cli_3.6.2-1_arm64.deb ... 229s Unpacking r-cran-cli (3.6.2-1) ... 229s Selecting previously unselected package r-cran-glue. 229s Preparing to unpack .../160-r-cran-glue_1.7.0-1_arm64.deb ... 229s Unpacking r-cran-glue (1.7.0-1) ... 229s Selecting previously unselected package r-cran-lifecycle. 229s Preparing to unpack .../161-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 229s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 229s Selecting previously unselected package r-cran-vctrs. 229s Preparing to unpack .../162-r-cran-vctrs_0.6.5-1_arm64.deb ... 229s Unpacking r-cran-vctrs (0.6.5-1) ... 229s Selecting previously unselected package r-cran-blob. 229s Preparing to unpack .../163-r-cran-blob_1.2.4-1_all.deb ... 229s Unpacking r-cran-blob (1.2.4-1) ... 229s Selecting previously unselected package r-cran-fastmap. 229s Preparing to unpack .../164-r-cran-fastmap_1.1.1-1_arm64.deb ... 229s Unpacking r-cran-fastmap (1.1.1-1) ... 229s Selecting previously unselected package r-cran-cachem. 229s Preparing to unpack .../165-r-cran-cachem_1.0.8-1_arm64.deb ... 229s Unpacking r-cran-cachem (1.0.8-1) ... 229s Selecting previously unselected package r-cran-memoise. 229s Preparing to unpack .../166-r-cran-memoise_2.0.1-1_all.deb ... 229s Unpacking r-cran-memoise (2.0.1-1) ... 229s Selecting previously unselected package r-cran-pkgconfig. 229s Preparing to unpack .../167-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 229s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 229s Selecting previously unselected package r-cran-plogr. 229s Preparing to unpack .../168-r-cran-plogr_0.2.0-3build1_all.deb ... 229s Unpacking r-cran-plogr (0.2.0-3build1) ... 229s Selecting previously unselected package r-cran-cpp11. 229s Preparing to unpack .../169-r-cran-cpp11_0.4.7-1_all.deb ... 229s Unpacking r-cran-cpp11 (0.4.7-1) ... 229s Selecting previously unselected package r-cran-rsqlite. 229s Preparing to unpack .../170-r-cran-rsqlite_2.3.4-1_arm64.deb ... 229s Unpacking r-cran-rsqlite (2.3.4-1) ... 229s Selecting previously unselected package r-cran-curl. 229s Preparing to unpack .../171-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 229s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 229s Selecting previously unselected package r-cran-jsonlite. 229s Preparing to unpack .../172-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 229s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 229s Selecting previously unselected package r-cran-mime. 229s Preparing to unpack .../173-r-cran-mime_0.12-1_arm64.deb ... 229s Unpacking r-cran-mime (0.12-1) ... 229s Selecting previously unselected package r-cran-sys. 230s Preparing to unpack .../174-r-cran-sys_3.4.2-1_arm64.deb ... 230s Unpacking r-cran-sys (3.4.2-1) ... 230s Selecting previously unselected package r-cran-askpass. 230s Preparing to unpack .../175-r-cran-askpass_1.2.0-1_arm64.deb ... 230s Unpacking r-cran-askpass (1.2.0-1) ... 230s Selecting previously unselected package r-cran-openssl. 230s Preparing to unpack .../176-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 230s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 230s Selecting previously unselected package r-cran-r6. 230s Preparing to unpack .../177-r-cran-r6_2.5.1-1_all.deb ... 230s Unpacking r-cran-r6 (2.5.1-1) ... 230s Selecting previously unselected package r-cran-httr. 230s Preparing to unpack .../178-r-cran-httr_1.4.7+dfsg-1_all.deb ... 230s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 230s Selecting previously unselected package r-cran-png. 230s Preparing to unpack .../179-r-cran-png_0.1-8-1_arm64.deb ... 230s Unpacking r-cran-png (0.1-8-1) ... 230s Selecting previously unselected package r-bioc-xvector. 230s Preparing to unpack .../180-r-bioc-xvector_0.42.0-1_arm64.deb ... 230s Unpacking r-bioc-xvector (0.42.0-1) ... 230s Selecting previously unselected package r-cran-bitops. 230s Preparing to unpack .../181-r-cran-bitops_1.0-7-1_arm64.deb ... 230s Unpacking r-cran-bitops (1.0-7-1) ... 230s Selecting previously unselected package r-cran-rcurl. 230s Preparing to unpack .../182-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 230s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 230s Selecting previously unselected package r-bioc-genomeinfodbdata. 230s Preparing to unpack .../183-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 230s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 230s Selecting previously unselected package r-bioc-genomeinfodb. 230s Preparing to unpack .../184-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 230s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 230s Selecting previously unselected package r-cran-crayon. 230s Preparing to unpack .../185-r-cran-crayon_1.5.2-1_all.deb ... 230s Unpacking r-cran-crayon (1.5.2-1) ... 230s Selecting previously unselected package r-bioc-biostrings. 230s Preparing to unpack .../186-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 230s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 230s Selecting previously unselected package r-bioc-keggrest. 230s Preparing to unpack .../187-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 230s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 230s Selecting previously unselected package r-bioc-annotationdbi. 230s Preparing to unpack .../188-r-bioc-annotationdbi_1.64.1-1_all.deb ... 230s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 230s Selecting previously unselected package r-cran-xml. 230s Preparing to unpack .../189-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 230s Unpacking r-cran-xml (3.99-0.16.1-1) ... 230s Selecting previously unselected package r-cran-xtable. 230s Preparing to unpack .../190-r-cran-xtable_1%3a1.8-4-2_all.deb ... 230s Unpacking r-cran-xtable (1:1.8-4-2) ... 230s Selecting previously unselected package r-bioc-annotate. 230s Preparing to unpack .../191-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 230s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 230s Selecting previously unselected package r-cran-generics. 230s Preparing to unpack .../192-r-cran-generics_0.1.3-1_all.deb ... 230s Unpacking r-cran-generics (0.1.3-1) ... 231s Selecting previously unselected package r-cran-magrittr. 231s Preparing to unpack .../193-r-cran-magrittr_2.0.3-1_arm64.deb ... 231s Unpacking r-cran-magrittr (2.0.3-1) ... 231s Selecting previously unselected package r-cran-fansi. 231s Preparing to unpack .../194-r-cran-fansi_1.0.5-1_arm64.deb ... 231s Unpacking r-cran-fansi (1.0.5-1) ... 231s Selecting previously unselected package r-cran-utf8. 231s Preparing to unpack .../195-r-cran-utf8_1.2.4-1_arm64.deb ... 231s Unpacking r-cran-utf8 (1.2.4-1) ... 231s Selecting previously unselected package r-cran-pillar. 231s Preparing to unpack .../196-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 231s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 231s Selecting previously unselected package r-cran-tibble. 231s Preparing to unpack .../197-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 231s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 231s Selecting previously unselected package r-cran-withr. 231s Preparing to unpack .../198-r-cran-withr_2.5.0-1_all.deb ... 231s Unpacking r-cran-withr (2.5.0-1) ... 231s Selecting previously unselected package r-cran-tidyselect. 231s Preparing to unpack .../199-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 231s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 231s Selecting previously unselected package r-cran-dplyr. 231s Preparing to unpack .../200-r-cran-dplyr_1.1.4-1_arm64.deb ... 231s Unpacking r-cran-dplyr (1.1.4-1) ... 231s Selecting previously unselected package r-cran-purrr. 231s Preparing to unpack .../201-r-cran-purrr_1.0.2-1_arm64.deb ... 231s Unpacking r-cran-purrr (1.0.2-1) ... 231s Selecting previously unselected package r-cran-stringi. 231s Preparing to unpack .../202-r-cran-stringi_1.8.3-1_arm64.deb ... 231s Unpacking r-cran-stringi (1.8.3-1) ... 231s Selecting previously unselected package r-cran-stringr. 231s Preparing to unpack .../203-r-cran-stringr_1.5.1-1_all.deb ... 231s Unpacking r-cran-stringr (1.5.1-1) ... 231s Selecting previously unselected package r-cran-tidyr. 231s Preparing to unpack .../204-r-cran-tidyr_1.3.1-1_arm64.deb ... 231s Unpacking r-cran-tidyr (1.3.1-1) ... 231s Selecting previously unselected package r-cran-dbplyr. 231s Preparing to unpack .../205-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 231s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 231s Selecting previously unselected package r-cran-filelock. 231s Preparing to unpack .../206-r-cran-filelock_1.0.3-1_arm64.deb ... 231s Unpacking r-cran-filelock (1.0.3-1) ... 231s Selecting previously unselected package r-bioc-biocfilecache. 231s Preparing to unpack .../207-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 231s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 231s Selecting previously unselected package r-cran-base64enc. 231s Preparing to unpack .../208-r-cran-base64enc_0.1-3-3_arm64.deb ... 231s Unpacking r-cran-base64enc (0.1-3-3) ... 231s Selecting previously unselected package r-cran-digest. 231s Preparing to unpack .../209-r-cran-digest_0.6.34-1_arm64.deb ... 231s Unpacking r-cran-digest (0.6.34-1) ... 231s Selecting previously unselected package r-cran-ellipsis. 231s Preparing to unpack .../210-r-cran-ellipsis_0.3.2-2_arm64.deb ... 231s Unpacking r-cran-ellipsis (0.3.2-2) ... 231s Selecting previously unselected package r-cran-htmltools. 231s Preparing to unpack .../211-r-cran-htmltools_0.5.7-1_arm64.deb ... 231s Unpacking r-cran-htmltools (0.5.7-1) ... 231s Selecting previously unselected package r-cran-evaluate. 231s Preparing to unpack .../212-r-cran-evaluate_0.23-1_all.deb ... 231s Unpacking r-cran-evaluate (0.23-1) ... 231s Selecting previously unselected package r-cran-xfun. 231s Preparing to unpack .../213-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 231s Unpacking r-cran-xfun (0.41+dfsg-1) ... 232s Selecting previously unselected package r-cran-highr. 232s Preparing to unpack .../214-r-cran-highr_0.10+dfsg-1_all.deb ... 232s Unpacking r-cran-highr (0.10+dfsg-1) ... 232s Selecting previously unselected package r-cran-yaml. 232s Preparing to unpack .../215-r-cran-yaml_2.3.8-1_arm64.deb ... 232s Unpacking r-cran-yaml (2.3.8-1) ... 232s Selecting previously unselected package libjs-mathjax. 232s Preparing to unpack .../216-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 232s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 232s Selecting previously unselected package r-cran-knitr. 232s Preparing to unpack .../217-r-cran-knitr_1.45+dfsg-1_all.deb ... 232s Unpacking r-cran-knitr (1.45+dfsg-1) ... 232s Selecting previously unselected package r-cran-jquerylib. 232s Preparing to unpack .../218-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 232s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 232s Selecting previously unselected package r-cran-fs. 232s Preparing to unpack .../219-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 232s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 232s Selecting previously unselected package r-cran-rappdirs. 232s Preparing to unpack .../220-r-cran-rappdirs_0.3.3-1_arm64.deb ... 232s Unpacking r-cran-rappdirs (0.3.3-1) ... 232s Selecting previously unselected package r-cran-sass. 232s Preparing to unpack .../221-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 232s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 232s Selecting previously unselected package r-cran-bslib. 232s Preparing to unpack .../222-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 232s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 233s Selecting previously unselected package r-cran-fontawesome. 233s Preparing to unpack .../223-r-cran-fontawesome_0.5.2-1_all.deb ... 233s Unpacking r-cran-fontawesome (0.5.2-1) ... 233s Selecting previously unselected package r-cran-tinytex. 233s Preparing to unpack .../224-r-cran-tinytex_0.49-1_all.deb ... 233s Unpacking r-cran-tinytex (0.49-1) ... 233s Selecting previously unselected package libjs-modernizr. 233s Preparing to unpack .../225-libjs-modernizr_2.6.2+ds1-5_all.deb ... 233s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 233s Selecting previously unselected package r-cran-pkgkitten. 233s Preparing to unpack .../226-r-cran-pkgkitten_0.2.3-1_all.deb ... 233s Unpacking r-cran-pkgkitten (0.2.3-1) ... 233s Selecting previously unselected package r-cran-rcpp. 233s Preparing to unpack .../227-r-cran-rcpp_1.0.12-1_arm64.deb ... 233s Unpacking r-cran-rcpp (1.0.12-1) ... 233s Selecting previously unselected package r-cran-later. 233s Preparing to unpack .../228-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 233s Unpacking r-cran-later (1.3.2+dfsg-1) ... 233s Selecting previously unselected package r-cran-promises. 233s Preparing to unpack .../229-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 233s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 233s Selecting previously unselected package r-cran-httpuv. 233s Preparing to unpack .../230-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 233s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 233s Selecting previously unselected package r-cran-sourcetools. 233s Preparing to unpack .../231-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 233s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 233s Selecting previously unselected package r-cran-commonmark. 233s Preparing to unpack .../232-r-cran-commonmark_1.9.1-1_arm64.deb ... 233s Unpacking r-cran-commonmark (1.9.1-1) ... 233s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 233s Preparing to unpack .../233-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 233s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 233s Selecting previously unselected package r-cran-shiny. 233s Preparing to unpack .../234-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 233s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 233s Selecting previously unselected package r-cran-rmarkdown. 233s Preparing to unpack .../235-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 233s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 233s Selecting previously unselected package r-cran-bookdown. 233s Preparing to unpack .../236-r-cran-bookdown_0.37+dfsg-1_all.deb ... 233s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 233s Selecting previously unselected package r-cran-biocmanager. 233s Preparing to unpack .../237-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 233s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 233s Selecting previously unselected package tex-common. 233s Preparing to unpack .../238-tex-common_6.18_all.deb ... 233s Unpacking tex-common (6.18) ... 233s Selecting previously unselected package t1utils. 233s Preparing to unpack .../239-t1utils_1.41-4build2_arm64.deb ... 233s Unpacking t1utils (1.41-4build2) ... 234s Selecting previously unselected package texlive-binaries. 234s Preparing to unpack .../240-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 234s Unpacking texlive-binaries (2023.20230311.66589-9) ... 234s Selecting previously unselected package texlive-base. 234s Preparing to unpack .../241-texlive-base_2023.20240207-1_all.deb ... 234s Unpacking texlive-base (2023.20240207-1) ... 235s Selecting previously unselected package texlive-latex-base. 235s Preparing to unpack .../242-texlive-latex-base_2023.20240207-1_all.deb ... 235s Unpacking texlive-latex-base (2023.20240207-1) ... 235s Selecting previously unselected package texlive-bibtex-extra. 235s Preparing to unpack .../243-texlive-bibtex-extra_2023.20240207-1_all.deb ... 235s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 237s Selecting previously unselected package r-bioc-biocstyle. 238s Preparing to unpack .../244-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 238s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 238s Selecting previously unselected package r-cran-hms. 238s Preparing to unpack .../245-r-cran-hms_1.1.3-1_all.deb ... 238s Unpacking r-cran-hms (1.1.3-1) ... 238s Selecting previously unselected package r-cran-prettyunits. 238s Preparing to unpack .../246-r-cran-prettyunits_1.2.0-1_all.deb ... 238s Unpacking r-cran-prettyunits (1.2.0-1) ... 238s Selecting previously unselected package r-cran-progress. 238s Preparing to unpack .../247-r-cran-progress_1.2.3-1_all.deb ... 238s Unpacking r-cran-progress (1.2.3-1) ... 238s Selecting previously unselected package r-cran-xml2. 238s Preparing to unpack .../248-r-cran-xml2_1.3.6-1_arm64.deb ... 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package r-cran-abind. 238s Preparing to unpack .../254-r-cran-abind_1.4-5-2_all.deb ... 238s Unpacking r-cran-abind (1.4-5-2) ... 238s Selecting previously unselected package r-bioc-s4arrays. 238s Preparing to unpack .../255-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 238s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 238s Selecting previously unselected package r-bioc-sparsearray. 238s Preparing to unpack .../256-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 238s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 238s Selecting previously unselected package r-bioc-delayedarray. 238s Preparing to unpack .../257-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 238s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 238s Selecting previously unselected package r-cran-survival. 238s Preparing to unpack .../258-r-cran-survival_3.5-8-1_arm64.deb ... 238s Unpacking r-cran-survival (3.5-8-1) ... 238s Selecting previously unselected package r-bioc-genefilter. 238s Preparing to unpack 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245s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 245s Setting up r-cran-littler (0.3.19-1) ... 245s Setting up r-cran-fs (1.6.3+dfsg-1) ... 245s Setting up r-cran-rcpp (1.0.12-1) ... 245s Setting up r-cran-curl (5.2.0+dfsg-1) ... 245s Setting up r-cran-codetools (0.2-19-1) ... 245s Setting up r-bioc-biocgenerics (0.48.1-2) ... 245s Setting up r-cran-rlang (1.1.3-1) ... 245s Setting up r-cran-matrixstats (1.2.0-1) ... 245s Setting up littler (0.3.19-1) ... 245s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 245s Setting up r-cran-xfun (0.41+dfsg-1) ... 245s Setting up r-cran-sys (3.4.2-1) ... 245s Setting up r-cran-plogr (0.2.0-3build1) ... 245s Setting up r-cran-withr (2.5.0-1) ... 245s Setting up r-cran-mime (0.12-1) ... 245s Setting up r-cran-generics (0.1.3-1) ... 245s Setting up r-cran-base64enc (0.1-3-3) ... 245s Setting up r-cran-iterators (1.0.14-1) ... 245s Setting up r-cran-abind (1.4-5-2) ... 245s Setting up r-cran-digest (0.6.34-1) ... 245s Setting up r-cran-yaml 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associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 245s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 245s Setting up r-cran-bitops (1.0-7-1) ... 245s Setting up r-cran-bit64 (4.0.5-1) ... 245s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 245s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 245s Setting up r-cran-askpass (1.2.0-1) ... 245s Setting up r-cran-fastmap (1.1.1-1) ... 245s Setting up r-cran-png (0.1-8-1) ... 245s Setting up r-bioc-affxparser (1.74.0-1) ... 245s Setting up r-bioc-biobase (2.62.0-1) ... 245s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 245s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 245s Setting up r-cran-utf8 (1.2.4-1) ... 245s Setting up r-cran-stringi (1.8.3-1) ... 245s Setting up texlive-latex-base (2023.20240207-1) ... 245s Setting up r-cran-cpp11 (0.4.7-1) ... 245s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 245s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 245s Setting up r-cran-runit (0.4.32-3) ... 245s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 245s Setting up r-cran-later (1.3.2+dfsg-1) ... 245s Setting up r-cran-matrix (1.6-5-1) ... 245s Setting up r-cran-tinytex (0.49-1) ... 245s Setting up r-cran-knitr (1.45+dfsg-1) ... 245s Setting up g++ (4:13.2.0-7ubuntu1) ... 245s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 245s Setting up r-cran-cachem (1.0.8-1) ... 245s Setting up build-essential (12.10ubuntu1) ... 245s Setting up r-bioc-preprocesscore (1.64.0+ds-1) ... 245s Setting up r-bioc-iranges (2.36.0-1) ... 245s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 245s Setting up r-cran-vctrs (0.6.5-1) ... 245s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 245s Setting up r-cran-ellipsis (0.3.2-2) ... 245s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 245s Setting up r-bioc-affyio (1.72.0-1) ... 245s Setting up r-base-dev (4.3.3-2build1) ... 245s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 245s Setting up r-cran-stringr (1.5.1-1) ... 245s Setting up r-cran-xml2 (1.3.6-1) ... 245s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 245s Setting up r-cran-survival (3.5-8-1) ... 245s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 245s Setting up texlive-bibtex-extra (2023.20240207-1) ... 245s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 245s Setting up r-cran-httr (1.4.7+dfsg-1) ... 245s Setting up r-cran-hms (1.1.3-1) ... 245s Setting up r-cran-memoise (2.0.1-1) ... 245s Setting up r-cran-promises (1.2.1+dfsg-1) ... 245s Setting up r-cran-purrr (1.0.2-1) ... 245s Setting up r-cran-blob (1.2.4-1) ... 245s Setting up r-cran-htmltools (0.5.7-1) ... 245s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 245s Setting up r-bioc-xvector (0.42.0-1) ... 245s Setting up r-cran-sass (0.4.8+dfsg-1) ... 245s Setting up r-cran-dplyr (1.1.4-1) ... 245s Setting up r-cran-rsqlite (2.3.4-1) ... 245s Setting up r-cran-progress (1.2.3-1) ... 245s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 245s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 245s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 245s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 245s Setting up r-cran-fontawesome (0.5.2-1) ... 245s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 245s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 245s Setting up r-cran-tidyr (1.3.1-1) ... 245s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 245s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 245s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 245s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 245s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 245s Setting up r-bioc-annotationdbi (1.64.1-1) ... 245s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 245s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 245s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 245s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 245s Setting up r-bioc-genefilter (1.84.0-1) ... 245s Setting up r-cran-bookdown (0.37+dfsg-1) ... 245s Setting up r-bioc-oligoclasses (1.64.0-1) ... 245s Setting up r-bioc-oligo (1.66.0+ds-1) ... 245s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 245s Setting up autopkgtest-satdep (0) ... 245s Processing triggers for man-db (2.12.0-3) ... 247s Processing triggers for install-info (7.1-3) ... 247s Processing triggers for libc-bin (2.39-0ubuntu2) ... 247s Processing triggers for tex-common (6.18) ... 248s Running updmap-sys. This may take some time... done. 248s Running mktexlsr /var/lib/texmf ... done. 248s Building format(s) --all. 285s This may take some time... done. 296s (Reading database ... 106643 files and directories currently installed.) 296s Removing autopkgtest-satdep (0) ... 297s autopkgtest [17:42:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 297s autopkgtest [17:42:38]: test pkg-r-autopkgtest: [----------------------- 297s Test: Try to load the R library oligo 297s 297s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 297s Copyright (C) 2024 The R Foundation for Statistical Computing 297s Platform: aarch64-unknown-linux-gnu (64-bit) 297s 297s R is free software and comes with ABSOLUTELY NO WARRANTY. 297s You are welcome to redistribute it under certain conditions. 297s Type 'license()' or 'licence()' for distribution details. 297s 297s R is a collaborative project with many contributors. 297s Type 'contributors()' for more information and 297s 'citation()' on how to cite R or R packages in publications. 297s 297s Type 'demo()' for some demos, 'help()' for on-line help, or 297s 'help.start()' for an HTML browser interface to help. 297s Type 'q()' to quit R. 297s 298s > library('oligo') 298s Loading required package: BiocGenerics 298s 298s Attaching package: ‘BiocGenerics’ 298s 298s The following objects are masked from ‘package:stats’: 298s 298s IQR, mad, sd, var, xtabs 298s 298s The following objects are masked from ‘package:base’: 298s 298s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 298s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 298s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 298s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 298s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 298s table, tapply, union, unique, unsplit, which.max, which.min 298s 298s Loading required package: oligoClasses 304s Welcome to oligoClasses version 1.64.0 304s Loading required package: Biobase 304s Welcome to Bioconductor 304s 304s Vignettes contain introductory material; view with 304s 'browseVignettes()'. To cite Bioconductor, see 304s 'citation("Biobase")', and for packages 'citation("pkgname")'. 304s 304s Loading required package: Biostrings 304s Loading required package: S4Vectors 304s Loading required package: stats4 304s 304s Attaching package: ‘S4Vectors’ 304s 304s The following object is masked from ‘package:utils’: 304s 304s findMatches 304s 304s The following objects are masked from ‘package:base’: 304s 304s expand.grid, I, unname 304s 304s Loading required package: IRanges 304s Loading required package: XVector 304s Loading required package: GenomeInfoDb 304s 304s Attaching package: ‘Biostrings’ 304s 304s The following object is masked from ‘package:base’: 304s 304s strsplit 304s 304s ================================================================================ 304s Welcome to oligo version 1.66.0 304s ================================================================================ 304s > 304s > 304s Other tests are currently unsupported! 304s They will be progressively added. 305s autopkgtest [17:42:46]: test pkg-r-autopkgtest: -----------------------] 305s autopkgtest [17:42:46]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 305s pkg-r-autopkgtest PASS 306s autopkgtest [17:42:47]: @@@@@@@@@@@@@@@@@@@@ summary 306s pkg-r-autopkgtest PASS 317s Creating nova instance adt-noble-arm64-r-bioc-oligo-20240316-173740-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...