0s autopkgtest [17:37:38]: starting date and time: 2024-03-16 17:37:38+0000 0s autopkgtest [17:37:38]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:37:38]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.8n7t2mek/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-noiseq --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-13.secgroup --name adt-noble-arm64-r-bioc-noiseq-20240316-173738-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 86s autopkgtest [17:39:04]: testbed dpkg architecture: arm64 86s autopkgtest [17:39:04]: testbed apt version: 2.7.12 86s autopkgtest [17:39:04]: @@@@@@@@@@@@@@@@@@@@ test bed setup 87s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 87s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 87s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 87s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 88s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 88s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 88s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 88s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 88s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 88s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 88s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 88s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 88s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 90s Fetched 9060 kB in 2s (4497 kB/s) 90s Reading package lists... 96s Reading package lists... 96s Building dependency tree... 96s Reading state information... 97s Calculating upgrade... 98s The following packages will be REMOVED: 98s libglib2.0-0 libssl3 98s The following NEW packages will be installed: 98s libglib2.0-0t64 libssl3t64 xdg-user-dirs 98s The following packages have been kept back: 98s curl 98s The following packages will be upgraded: 98s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 98s ubuntu-minimal ubuntu-standard 99s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 99s Need to get 4613 kB of archives. 99s After this operation, 211 kB of additional disk space will be used. 99s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 99s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 99s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 99s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 99s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 99s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 99s Fetched 4613 kB in 1s (6864 kB/s) 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 100s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 100s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 100s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 100s udisks2 depends on libglib2.0-0 (>= 2.77.0). 100s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 100s python3-gi depends on libglib2.0-0 (>= 2.77.0). 100s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 100s netplan.io depends on libglib2.0-0 (>= 2.70.0). 100s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 100s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 100s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 100s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 100s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 100s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 100s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 100s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 100s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 100s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 100s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 100s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 100s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 100s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 100s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 100s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 100s fwupd depends on libglib2.0-0 (>= 2.79.0). 100s bolt depends on libglib2.0-0 (>= 2.56.0). 100s 100s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 101s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 101s Selecting previously unselected package libglib2.0-0t64:arm64. 101s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 101s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 101s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 101s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 101s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 101s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 101s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 101s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 101s wget depends on libssl3 (>= 3.0.0). 101s u-boot-tools depends on libssl3 (>= 3.0.0). 101s tnftp depends on libssl3 (>= 3.0.0). 101s tcpdump depends on libssl3 (>= 3.0.0). 101s systemd-resolved depends on libssl3 (>= 3.0.0). 101s systemd depends on libssl3 (>= 3.0.0). 101s sudo depends on libssl3 (>= 3.0.0). 101s sbsigntool depends on libssl3 (>= 3.0.0). 101s rsync depends on libssl3 (>= 3.0.0). 101s python3-cryptography depends on libssl3 (>= 3.0.0). 101s openssh-server depends on libssl3 (>= 3.0.10). 101s openssh-client depends on libssl3 (>= 3.0.10). 101s mtd-utils depends on libssl3 (>= 3.0.0). 101s mokutil depends on libssl3 (>= 3.0.0). 101s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 101s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 101s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 101s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 101s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 101s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 101s libnvme1 depends on libssl3 (>= 3.0.0). 101s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 101s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 101s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 101s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 101s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 101s kmod depends on libssl3 (>= 3.0.0). 101s dhcpcd-base depends on libssl3 (>= 3.0.0). 101s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 101s 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 102s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 102s Selecting previously unselected package libssl3t64:arm64. 102s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 102s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 102s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 102s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 102s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 102s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 102s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 103s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 103s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 103s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 103s Unpacking ubuntu-minimal (1.536) over (1.535) ... 103s Selecting previously unselected package xdg-user-dirs. 103s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 104s Unpacking xdg-user-dirs (0.18-1) ... 104s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 104s Unpacking ubuntu-standard (1.536) over (1.535) ... 104s Setting up ubuntu-minimal (1.536) ... 104s Setting up xdg-user-dirs (0.18-1) ... 104s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 104s Setting up libtirpc-common (1.3.4+ds-1.1) ... 104s Setting up ubuntu-standard (1.536) ... 104s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 104s No schema files found: doing nothing. 104s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 104s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 104s Setting up openssl (3.0.13-0ubuntu1) ... 104s Setting up readline-common (8.2-3.1) ... 104s Processing triggers for man-db (2.12.0-3) ... 104s Processing triggers for install-info (7.1-3) ... 104s Processing triggers for libc-bin (2.39-0ubuntu2) ... 106s Reading package lists... 107s Building dependency tree... 107s Reading state information... 109s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 111s sh: Attempting to set up Debian/Ubuntu apt sources automatically 111s sh: Distribution appears to be Ubuntu 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 114s eatmydata is already the newest version (131-1). 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 116s dbus is already the newest version (1.14.10-4ubuntu1). 116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 116s Reading package lists... 116s Building dependency tree... 116s Reading state information... 117s rng-tools-debian is already the newest version (2.4). 117s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 117s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s The following packages will be REMOVED: 118s cloud-init* python3-configobj* python3-debconf* 120s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 120s After this operation, 3252 kB disk space will be freed. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 121s Removing cloud-init (24.1.1-0ubuntu1) ... 122s Removing python3-configobj (5.0.8-3) ... 122s Removing python3-debconf (1.5.86) ... 122s Processing triggers for man-db (2.12.0-3) ... 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 122s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 124s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 124s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 124s invoke-rc.d: policy-rc.d denied execution of try-restart. 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 127s linux-generic is already the newest version (6.8.0-11.11+1). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 128s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 128s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 130s Reading package lists... 130s Reading package lists... 131s Building dependency tree... 131s Reading state information... 131s Calculating upgrade... 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Reading package lists... 132s Building dependency tree... 132s Reading state information... 133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 134s autopkgtest [17:39:52]: rebooting testbed after setup commands that affected boot 374s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 381s autopkgtest [17:43:59]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 384s autopkgtest [17:44:02]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-noiseq 386s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-noiseq 2.46.0-1 (dsc) [2086 B] 386s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-noiseq 2.46.0-1 (tar) [1983 kB] 386s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-noiseq 2.46.0-1 (diff) [5368 B] 387s gpgv: Signature made Thu Nov 30 07:50:54 2023 UTC 387s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 387s gpgv: issuer "tille@debian.org" 387s gpgv: Can't check signature: No public key 387s dpkg-source: warning: cannot verify inline signature for ./r-bioc-noiseq_2.46.0-1.dsc: no acceptable signature found 387s autopkgtest [17:44:05]: testing package r-bioc-noiseq version 2.46.0-1 387s autopkgtest [17:44:05]: build not needed 388s autopkgtest [17:44:06]: test pkg-r-autopkgtest: preparing testbed 389s Reading package lists... 390s Building dependency tree... 390s Reading state information... 390s Starting pkgProblemResolver with broken count: 0 390s Starting 2 pkgProblemResolver with broken count: 0 390s Done 391s The following additional packages will be installed: 391s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 391s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 391s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 391s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 391s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 391s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 391s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 391s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 391s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 391s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 391s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 391s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 391s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 391s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 391s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 391s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 391s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 391s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 391s r-bioc-biobase r-bioc-biocgenerics r-bioc-noiseq r-cran-lattice 391s r-cran-matrix rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 391s Suggested packages: 391s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 391s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 391s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 391s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 391s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 391s r-base-html texlive-base texlive-latex-base texlive-plain-generic 391s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 391s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 391s r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-s4vectors r-bioc-iranges 391s r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools 391s r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate 391s Recommended packages: 391s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 391s r-doc-html libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 391s x11-utils x11-xserver-utils 391s The following NEW packages will be installed: 391s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 391s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 391s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 391s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 391s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 391s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 391s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 391s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 391s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 391s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 391s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 391s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 391s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 391s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 391s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 391s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 391s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 391s linux-libc-dev pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 391s r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-noiseq r-cran-lattice 391s r-cran-matrix rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 391s 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. 391s Need to get 140 MB/140 MB of archives. 391s After this operation, 434 MB of additional disk space will be used. 391s Get:1 /tmp/autopkgtest.O3KMQ7/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [716 B] 391s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 391s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 392s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 392s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 392s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 392s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 392s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 392s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 392s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 392s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 392s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 392s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 392s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 392s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 392s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 392s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 392s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 392s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 392s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 392s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 392s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 392s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 392s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 392s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 393s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 393s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 393s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 393s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 393s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 393s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 393s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 393s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 393s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 393s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 393s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 393s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 393s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 393s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 393s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 393s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 393s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 393s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 394s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 394s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 394s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 394s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 394s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 394s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 394s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 394s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 394s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 394s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 394s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 394s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 394s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 394s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 394s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 394s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 394s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 394s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 394s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 394s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 394s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 394s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 394s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 394s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 394s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 394s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 394s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 394s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 394s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 394s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 394s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 394s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 394s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 394s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 394s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 394s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 394s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 394s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 394s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 394s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 394s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 394s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 394s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 394s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 394s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 394s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 394s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 394s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 394s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 394s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 394s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 394s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 394s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 394s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 394s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 394s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 394s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 394s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 394s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 395s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 396s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 396s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 396s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 396s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 396s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 396s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 396s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 396s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-noiseq all 2.46.0-1 [2330 kB] 397s Preconfiguring packages ... 397s Fetched 140 MB in 5s (28.0 MB/s) 397s Selecting previously unselected package libc-dev-bin. 397s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 397s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 397s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 397s Selecting previously unselected package linux-libc-dev:arm64. 397s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 397s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 397s Selecting previously unselected package libcrypt-dev:arm64. 397s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 397s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 397s Selecting previously unselected package libtirpc-dev:arm64. 398s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 398s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 398s Selecting previously unselected package libnsl-dev:arm64. 398s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 398s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 398s Selecting previously unselected package rpcsvc-proto. 398s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 398s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 398s Selecting previously unselected package libc6-dev:arm64. 398s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 398s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 398s Selecting previously unselected package libisl23:arm64. 398s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 398s Unpacking libisl23:arm64 (0.26-3) ... 398s Selecting previously unselected package libmpc3:arm64. 398s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 398s Unpacking libmpc3:arm64 (1.3.1-1) ... 398s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 398s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package cpp-13. 398s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package cpp-aarch64-linux-gnu. 398s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 398s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 398s Selecting previously unselected package cpp. 398s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 398s Unpacking cpp (4:13.2.0-7ubuntu1) ... 398s Selecting previously unselected package libcc1-0:arm64. 398s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package libgomp1:arm64. 398s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package libitm1:arm64. 398s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package libatomic1:arm64. 398s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package libasan8:arm64. 398s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package liblsan0:arm64. 398s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 398s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 399s Selecting previously unselected package libtsan2:arm64. 399s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 399s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 400s Selecting previously unselected package libubsan1:arm64. 400s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 400s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 400s Selecting previously unselected package libhwasan0:arm64. 400s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 400s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 400s Selecting previously unselected package libgcc-13-dev:arm64. 400s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 400s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package gcc-13. 400s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package gcc-aarch64-linux-gnu. 400s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package gcc. 400s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking gcc (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package libstdc++-13-dev:arm64. 400s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package g++-13-aarch64-linux-gnu. 400s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package g++-13. 400s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking g++-13 (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package g++-aarch64-linux-gnu. 400s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package g++. 400s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking g++ (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package build-essential. 400s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 400s Unpacking build-essential (12.10ubuntu1) ... 400s Selecting previously unselected package dctrl-tools. 400s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 400s Unpacking dctrl-tools (2.24-3build2) ... 400s Selecting previously unselected package fonts-dejavu-mono. 400s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 400s Unpacking fonts-dejavu-mono (2.37-8) ... 400s Selecting previously unselected package fonts-dejavu-core. 400s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 400s Unpacking fonts-dejavu-core (2.37-8) ... 400s Selecting previously unselected package fontconfig-config. 400s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 400s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 400s Selecting previously unselected package libfontconfig1:arm64. 400s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 400s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 400s Selecting previously unselected package fontconfig. 400s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 400s Unpacking fontconfig (2.15.0-1ubuntu1) ... 400s Selecting previously unselected package libgfortran5:arm64. 400s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 400s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 400s Selecting previously unselected package libgfortran-13-dev:arm64. 400s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 401s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 401s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 401s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 401s Selecting previously unselected package gfortran-13. 401s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 401s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 401s Selecting previously unselected package gfortran-aarch64-linux-gnu. 401s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 401s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 401s Selecting previously unselected package gfortran. 401s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 401s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 401s Selecting previously unselected package icu-devtools. 401s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 401s Unpacking icu-devtools (74.2-1ubuntu1) ... 401s Selecting previously unselected package libblas3:arm64. 401s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 401s Unpacking libblas3:arm64 (3.12.0-3) ... 401s Selecting previously unselected package libblas-dev:arm64. 401s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 401s Unpacking libblas-dev:arm64 (3.12.0-3) ... 401s Selecting previously unselected package libbz2-dev:arm64. 401s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 401s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 401s Selecting previously unselected package libpixman-1-0:arm64. 401s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 401s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 401s Selecting previously unselected package libxcb-render0:arm64. 401s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 401s Unpacking libxcb-render0:arm64 (1.15-1) ... 401s Selecting previously unselected package libxcb-shm0:arm64. 401s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 401s Unpacking libxcb-shm0:arm64 (1.15-1) ... 401s Selecting previously unselected package libxrender1:arm64. 401s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 401s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 401s Selecting previously unselected package libcairo2:arm64. 401s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 401s Unpacking libcairo2:arm64 (1.18.0-1) ... 401s Selecting previously unselected package libdatrie1:arm64. 401s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 401s Unpacking libdatrie1:arm64 (0.2.13-3) ... 401s Selecting previously unselected package libdeflate0:arm64. 401s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 401s Unpacking libdeflate0:arm64 (1.19-1) ... 401s Selecting previously unselected package libgraphite2-3:arm64. 401s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 401s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 402s Selecting previously unselected package libharfbuzz0b:arm64. 402s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 402s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 402s Selecting previously unselected package x11-common. 402s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 402s Unpacking x11-common (1:7.7+23ubuntu2) ... 402s Selecting previously unselected package libice6:arm64. 402s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 402s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 402s Selecting previously unselected package libicu-dev:arm64. 402s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 402s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 403s Selecting previously unselected package libjpeg-turbo8:arm64. 403s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 403s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 403s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 403s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 403s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 403s Selecting previously unselected package libjpeg8:arm64. 403s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 403s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 403s Selecting previously unselected package libjpeg8-dev:arm64. 403s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 403s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 403s Selecting previously unselected package libjpeg-dev:arm64. 403s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 403s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 403s Selecting previously unselected package liblapack3:arm64. 403s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 403s Unpacking liblapack3:arm64 (3.12.0-3) ... 403s Selecting previously unselected package liblapack-dev:arm64. 404s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 404s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 404s Selecting previously unselected package liblerc4:arm64. 404s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 404s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 404s Selecting previously unselected package libncurses-dev:arm64. 404s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 404s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 404s Selecting previously unselected package libthai-data. 404s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 404s Unpacking libthai-data (0.1.29-2) ... 404s Selecting previously unselected package libthai0:arm64. 404s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 404s Unpacking libthai0:arm64 (0.1.29-2) ... 404s Selecting previously unselected package libpango-1.0-0:arm64. 404s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 404s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpangoft2-1.0-0:arm64. 404s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 404s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpangocairo-1.0-0:arm64. 404s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 404s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 404s Selecting previously unselected package libpaper1:arm64. 404s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 404s Unpacking libpaper1:arm64 (1.1.29) ... 404s Selecting previously unselected package libpaper-utils. 404s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 404s Unpacking libpaper-utils (1.1.29) ... 404s Selecting previously unselected package libpcre2-16-0:arm64. 404s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 404s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 404s Selecting previously unselected package libpcre2-32-0:arm64. 404s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 404s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 404s Selecting previously unselected package libpcre2-posix3:arm64. 405s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 405s Selecting previously unselected package libpcre2-dev:arm64. 405s Preparing to unpack .../080-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 405s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 405s Selecting previously unselected package libpkgconf3:arm64. 405s Preparing to unpack .../081-libpkgconf3_1.8.1-2_arm64.deb ... 405s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 405s Selecting previously unselected package zlib1g-dev:arm64. 405s Preparing to unpack .../082-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 405s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 405s Selecting previously unselected package libpng-dev:arm64. 405s Preparing to unpack .../083-libpng-dev_1.6.43-1_arm64.deb ... 405s Unpacking libpng-dev:arm64 (1.6.43-1) ... 405s Selecting previously unselected package libreadline-dev:arm64. 405s Preparing to unpack .../084-libreadline-dev_8.2-3_arm64.deb ... 405s Unpacking libreadline-dev:arm64 (8.2-3) ... 405s Selecting previously unselected package libsharpyuv0:arm64. 405s Preparing to unpack .../085-libsharpyuv0_1.3.2-0.4_arm64.deb ... 405s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 405s Selecting previously unselected package libsm6:arm64. 405s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 405s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 405s Selecting previously unselected package libtcl8.6:arm64. 405s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 405s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 405s Selecting previously unselected package libjbig0:arm64. 405s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 405s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 405s Selecting previously unselected package libwebp7:arm64. 405s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 405s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 405s Selecting previously unselected package libtiff6:arm64. 405s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 405s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 405s Selecting previously unselected package libxft2:arm64. 405s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 405s Unpacking libxft2:arm64 (2.3.6-1) ... 405s Selecting previously unselected package libxss1:arm64. 405s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 405s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 405s Selecting previously unselected package libtk8.6:arm64. 405s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 405s Unpacking libtk8.6:arm64 (8.6.13-2) ... 405s Selecting previously unselected package libxt6:arm64. 405s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 405s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 405s Selecting previously unselected package pkgconf-bin. 405s Preparing to unpack .../095-pkgconf-bin_1.8.1-2_arm64.deb ... 405s Unpacking pkgconf-bin (1.8.1-2) ... 405s Selecting previously unselected package pkgconf:arm64. 405s Preparing to unpack .../096-pkgconf_1.8.1-2_arm64.deb ... 405s Unpacking pkgconf:arm64 (1.8.1-2) ... 405s Selecting previously unselected package pkg-config:arm64. 405s Preparing to unpack .../097-pkg-config_1.8.1-2_arm64.deb ... 405s Unpacking pkg-config:arm64 (1.8.1-2) ... 405s Selecting previously unselected package zip. 405s Preparing to unpack .../098-zip_3.0-13_arm64.deb ... 405s Unpacking zip (3.0-13) ... 405s Selecting previously unselected package unzip. 405s Preparing to unpack .../099-unzip_6.0-28ubuntu3_arm64.deb ... 405s Unpacking unzip (6.0-28ubuntu3) ... 406s Selecting previously unselected package xdg-utils. 406s Preparing to unpack .../100-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 406s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 406s Selecting previously unselected package r-base-core. 406s Preparing to unpack .../101-r-base-core_4.3.2-1build1_arm64.deb ... 406s Unpacking r-base-core (4.3.2-1build1) ... 406s Selecting previously unselected package liblzma-dev:arm64. 406s Preparing to unpack .../102-liblzma-dev_5.4.5-0.3_arm64.deb ... 406s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 406s Selecting previously unselected package r-base-dev. 406s Preparing to unpack .../103-r-base-dev_4.3.2-1build1_all.deb ... 406s Unpacking r-base-dev (4.3.2-1build1) ... 406s Selecting previously unselected package pkg-r-autopkgtest. 406s Preparing to unpack .../104-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 406s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 406s Selecting previously unselected package r-bioc-biocgenerics. 406s Preparing to unpack .../105-r-bioc-biocgenerics_0.48.1-2_all.deb ... 406s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 406s Selecting previously unselected package r-bioc-biobase. 406s Preparing to unpack .../106-r-bioc-biobase_2.62.0-1_arm64.deb ... 406s Unpacking r-bioc-biobase (2.62.0-1) ... 406s Selecting previously unselected package r-cran-lattice. 406s Preparing to unpack .../107-r-cran-lattice_0.22-5-1_arm64.deb ... 406s Unpacking r-cran-lattice (0.22-5-1) ... 406s Selecting previously unselected package r-cran-matrix. 406s Preparing to unpack .../108-r-cran-matrix_1.6-5-1_arm64.deb ... 406s Unpacking r-cran-matrix (1.6-5-1) ... 406s Selecting previously unselected package r-bioc-noiseq. 406s Preparing to unpack .../109-r-bioc-noiseq_2.46.0-1_all.deb ... 406s Unpacking r-bioc-noiseq (2.46.0-1) ... 406s Selecting previously unselected package autopkgtest-satdep. 406s Preparing to unpack .../110-1-autopkgtest-satdep.deb ... 406s Unpacking autopkgtest-satdep (0) ... 406s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 406s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 406s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 406s Setting up libpaper1:arm64 (1.1.29) ... 407s 407s Creating config file /etc/papersize with new version 407s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 407s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 407s Setting up libdatrie1:arm64 (0.2.13-3) ... 407s Setting up libxcb-render0:arm64 (1.15-1) ... 407s Setting up unzip (6.0-28ubuntu3) ... 407s Setting up x11-common (1:7.7+23ubuntu2) ... 407s Setting up libdeflate0:arm64 (1.19-1) ... 407s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 407s Setting up libxcb-shm0:arm64 (1.15-1) ... 407s Setting up libpaper-utils (1.1.29) ... 407s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 407s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 407s Setting up zip (3.0-13) ... 407s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 407s Setting up libblas3:arm64 (3.12.0-3) ... 407s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 407s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 407s Setting up libpkgconf3:arm64 (1.8.1-2) ... 407s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 407s Setting up fonts-dejavu-mono (2.37-8) ... 407s Setting up libmpc3:arm64 (1.3.1-1) ... 407s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 407s Setting up icu-devtools (74.2-1ubuntu1) ... 407s Setting up fonts-dejavu-core (2.37-8) ... 407s Setting up pkgconf-bin (1.8.1-2) ... 407s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 407s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libwebp7:arm64 (1.3.2-0.4) ... 407s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 407s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 407s Setting up libnsl-dev:arm64 (1.3.0-3) ... 407s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 407s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 407s Setting up libthai-data (0.1.29-2) ... 407s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 407s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libisl23:arm64 (0.26-3) ... 407s Setting up libc-dev-bin (2.39-0ubuntu2) ... 407s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 407s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 407s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 407s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libblas-dev:arm64 (3.12.0-3) ... 407s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 407s Setting up dctrl-tools (2.24-3build2) ... 407s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 407s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 407s Setting up libice6:arm64 (2:1.0.10-1build2) ... 407s Setting up liblapack3:arm64 (3.12.0-3) ... 407s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 407s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 407s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 408s Setting up pkgconf:arm64 (1.8.1-2) ... 408s Setting up libthai0:arm64 (0.1.29-2) ... 408s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 408s Setting up liblapack-dev:arm64 (3.12.0-3) ... 408s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 408s Setting up pkg-config:arm64 (1.8.1-2) ... 408s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 408s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 408s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 408s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 408s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 408s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 408s Setting up fontconfig (2.15.0-1ubuntu1) ... 410s Regenerating fonts cache... done. 410s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 410s Setting up libxft2:arm64 (2.3.6-1) ... 410s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 410s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 410s Setting up cpp-13 (13.2.0-17ubuntu2) ... 410s Setting up libtk8.6:arm64 (8.6.13-2) ... 410s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 410s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 410s Setting up libreadline-dev:arm64 (8.2-3) ... 410s Setting up libcairo2:arm64 (1.18.0-1) ... 410s Setting up gcc-13 (13.2.0-17ubuntu2) ... 410s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 410s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 410s Setting up cpp (4:13.2.0-7ubuntu1) ... 410s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 410s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 410s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 410s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 410s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 410s Setting up g++-13 (13.2.0-17ubuntu2) ... 410s Setting up libpng-dev:arm64 (1.6.43-1) ... 410s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 410s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 410s Setting up gcc (4:13.2.0-7ubuntu1) ... 410s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 410s Setting up r-base-core (4.3.2-1build1) ... 410s 410s Creating config file /etc/R/Renviron with new version 410s Setting up r-cran-lattice (0.22-5-1) ... 410s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 410s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 410s Setting up r-bioc-biocgenerics (0.48.1-2) ... 410s Setting up gfortran (4:13.2.0-7ubuntu1) ... 410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 410s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 410s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 410s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 410s Setting up r-bioc-biobase (2.62.0-1) ... 410s Setting up r-cran-matrix (1.6-5-1) ... 410s Setting up g++ (4:13.2.0-7ubuntu1) ... 410s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 410s Setting up build-essential (12.10ubuntu1) ... 410s Setting up r-bioc-noiseq (2.46.0-1) ... 410s Setting up r-base-dev (4.3.2-1build1) ... 410s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 410s Setting up autopkgtest-satdep (0) ... 410s Processing triggers for man-db (2.12.0-3) ... 411s Processing triggers for install-info (7.1-3) ... 411s Processing triggers for libc-bin (2.39-0ubuntu2) ... 420s (Reading database ... 80294 files and directories currently installed.) 420s Removing autopkgtest-satdep (0) ... 420s autopkgtest [17:44:38]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 420s autopkgtest [17:44:38]: test pkg-r-autopkgtest: [----------------------- 420s Test: Try to load the R library NOISeq 421s 421s R version 4.3.2 (2023-10-31) -- "Eye Holes" 421s Copyright (C) 2023 The R Foundation for Statistical Computing 421s Platform: aarch64-unknown-linux-gnu (64-bit) 421s 421s R is free software and comes with ABSOLUTELY NO WARRANTY. 421s You are welcome to redistribute it under certain conditions. 421s Type 'license()' or 'licence()' for distribution details. 421s 421s R is a collaborative project with many contributors. 421s Type 'contributors()' for more information and 421s 'citation()' on how to cite R or R packages in publications. 421s 421s Type 'demo()' for some demos, 'help()' for on-line help, or 421s 'help.start()' for an HTML browser interface to help. 421s Type 'q()' to quit R. 421s 421s > library('NOISeq') 421s Loading required package: Biobase 421s Loading required package: BiocGenerics 421s 421s Attaching package: ‘BiocGenerics’ 421s 421s The following objects are masked from ‘package:stats’: 421s 421s IQR, mad, sd, var, xtabs 421s 421s The following objects are masked from ‘package:base’: 421s 421s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 421s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 421s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 421s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 421s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 421s table, tapply, union, unique, unsplit, which.max, which.min 421s 421s Welcome to Bioconductor 421s 421s Vignettes contain introductory material; view with 421s 'browseVignettes()'. To cite Bioconductor, see 421s 'citation("Biobase")', and for packages 'citation("pkgname")'. 421s 421s Loading required package: splines 421s Loading required package: Matrix 422s > 422s > 422s Other tests are currently unsupported! 422s They will be progressively added. 423s autopkgtest [17:44:41]: test pkg-r-autopkgtest: -----------------------] 423s pkg-r-autopkgtest PASS 423s autopkgtest [17:44:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 423s autopkgtest [17:44:41]: @@@@@@@@@@@@@@@@@@@@ summary 423s pkg-r-autopkgtest PASS 434s Creating nova instance adt-noble-arm64-r-bioc-noiseq-20240316-173738-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...