0s autopkgtest [17:36:29]: starting date and time: 2024-03-16 17:36:29+0000 0s autopkgtest [17:36:29]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:36:29]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.g9tvks9s/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-matrixgenerics --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-matrixgenerics-20240316-173629-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 98s autopkgtest [17:38:07]: testbed dpkg architecture: arm64 98s autopkgtest [17:38:07]: testbed apt version: 2.7.12 98s autopkgtest [17:38:07]: @@@@@@@@@@@@@@@@@@@@ test bed setup 99s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 99s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 99s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 100s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 100s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 100s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 100s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 100s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 100s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 100s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 103s Fetched 9060 kB in 2s (5151 kB/s) 103s Reading package lists... 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s Calculating upgrade... 110s The following packages will be REMOVED: 110s libglib2.0-0 libssl3 110s The following NEW packages will be installed: 110s libglib2.0-0t64 libssl3t64 xdg-user-dirs 110s The following packages have been kept back: 110s curl 110s The following packages will be upgraded: 110s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 110s ubuntu-minimal ubuntu-standard 110s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 110s Need to get 4613 kB of archives. 110s After this operation, 211 kB of additional disk space will be used. 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 110s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 111s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 111s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 112s Fetched 4613 kB in 1s (6154 kB/s) 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 112s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 112s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 112s udisks2 depends on libglib2.0-0 (>= 2.77.0). 112s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 112s python3-gi depends on libglib2.0-0 (>= 2.77.0). 112s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 112s netplan.io depends on libglib2.0-0 (>= 2.70.0). 112s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 112s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 112s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 112s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 112s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 112s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 112s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 112s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 112s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 112s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 112s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 112s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 112s fwupd depends on libglib2.0-0 (>= 2.79.0). 112s bolt depends on libglib2.0-0 (>= 2.56.0). 112s 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 112s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 112s Selecting previously unselected package libglib2.0-0t64:arm64. 112s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 112s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 112s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 112s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 112s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 113s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 113s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 113s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 113s wget depends on libssl3 (>= 3.0.0). 113s u-boot-tools depends on libssl3 (>= 3.0.0). 113s tnftp depends on libssl3 (>= 3.0.0). 113s tcpdump depends on libssl3 (>= 3.0.0). 113s systemd-resolved depends on libssl3 (>= 3.0.0). 113s systemd depends on libssl3 (>= 3.0.0). 113s sudo depends on libssl3 (>= 3.0.0). 113s sbsigntool depends on libssl3 (>= 3.0.0). 113s rsync depends on libssl3 (>= 3.0.0). 113s python3-cryptography depends on libssl3 (>= 3.0.0). 113s openssh-server depends on libssl3 (>= 3.0.10). 113s openssh-client depends on libssl3 (>= 3.0.10). 113s mtd-utils depends on libssl3 (>= 3.0.0). 113s mokutil depends on libssl3 (>= 3.0.0). 113s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 113s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 113s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 113s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 113s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 113s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 113s libnvme1 depends on libssl3 (>= 3.0.0). 113s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 113s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 113s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 113s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 113s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 113s kmod depends on libssl3 (>= 3.0.0). 113s dhcpcd-base depends on libssl3 (>= 3.0.0). 113s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 113s 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 113s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 113s Selecting previously unselected package libssl3t64:arm64. 113s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 113s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 113s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 113s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 113s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 113s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 113s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 113s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 113s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 113s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 113s Unpacking ubuntu-minimal (1.536) over (1.535) ... 113s Selecting previously unselected package xdg-user-dirs. 113s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 113s Unpacking xdg-user-dirs (0.18-1) ... 113s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 113s Unpacking ubuntu-standard (1.536) over (1.535) ... 113s Setting up ubuntu-minimal (1.536) ... 113s Setting up xdg-user-dirs (0.18-1) ... 113s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 113s Setting up libtirpc-common (1.3.4+ds-1.1) ... 113s Setting up ubuntu-standard (1.536) ... 113s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 113s No schema files found: doing nothing. 114s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 114s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 114s Setting up openssl (3.0.13-0ubuntu1) ... 114s Setting up readline-common (8.2-3.1) ... 114s Processing triggers for man-db (2.12.0-3) ... 114s Processing triggers for install-info (7.1-3) ... 114s Processing triggers for libc-bin (2.39-0ubuntu2) ... 115s Reading package lists... 115s Building dependency tree... 115s Reading state information... 116s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 117s sh: Attempting to set up Debian/Ubuntu apt sources automatically 117s sh: Distribution appears to be Ubuntu 118s Reading package lists... 118s Building dependency tree... 118s Reading state information... 118s eatmydata is already the newest version (131-1). 118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 119s dbus is already the newest version (1.14.10-4ubuntu1). 119s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 119s Reading package lists... 119s Building dependency tree... 119s Reading state information... 120s rng-tools-debian is already the newest version (2.4). 120s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 120s Reading package lists... 120s Building dependency tree... 120s Reading state information... 121s The following packages will be REMOVED: 121s cloud-init* python3-configobj* python3-debconf* 122s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 122s After this operation, 3252 kB disk space will be freed. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 122s Removing cloud-init (24.1.1-0ubuntu1) ... 122s Removing python3-configobj (5.0.8-3) ... 123s Removing python3-debconf (1.5.86) ... 123s Processing triggers for man-db (2.12.0-3) ... 123s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 123s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 124s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 124s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 124s invoke-rc.d: policy-rc.d denied execution of try-restart. 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s linux-generic is already the newest version (6.8.0-11.11+1). 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 125s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 125s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 127s Reading package lists... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s Calculating upgrade... 129s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 129s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s autopkgtest [17:38:39]: rebooting testbed after setup commands that affected boot 376s autopkgtest [17:42:45]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 378s autopkgtest [17:42:47]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-matrixgenerics 382s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (dsc) [2204 B] 382s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (tar) [31.2 kB] 382s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-matrixgenerics 1.14.0-1 (diff) [5360 B] 382s gpgv: Signature made Wed Nov 29 20:07:31 2023 UTC 382s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 382s gpgv: issuer "tillea@rki.de" 382s gpgv: Can't check signature: No public key 382s dpkg-source: warning: cannot verify inline signature for ./r-bioc-matrixgenerics_1.14.0-1.dsc: no acceptable signature found 382s autopkgtest [17:42:51]: testing package r-bioc-matrixgenerics version 1.14.0-1 383s autopkgtest [17:42:52]: build not needed 384s autopkgtest [17:42:53]: test pkg-r-autopkgtest: preparing testbed 385s Reading package lists... 386s Building dependency tree... 386s Reading state information... 386s Starting pkgProblemResolver with broken count: 0 386s Starting 2 pkgProblemResolver with broken count: 0 386s Done 387s The following additional packages will be installed: 387s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 387s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 387s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 387s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 387s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 387s libasan8 libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev 387s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 387s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 387s libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 387s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 387s liblapack-dev liblapack3 liblerc4 liblsan0 liblzma-dev libmpc3 387s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 387s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 387s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 387s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 387s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 387s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 387s littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 387s r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-delayedarray 387s r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata 387s r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-s4arrays 387s r-bioc-s4vectors r-bioc-sparsearray r-bioc-sparsematrixstats 387s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 387s r-cran-bitops r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc 387s r-cran-diffobj r-cran-digest r-cran-evaluate r-cran-fansi r-cran-fs 387s r-cran-glue r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler 387s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-pillar 387s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 387s r-cran-praise r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rcurl 387s r-cran-rematch2 r-cran-rlang r-cran-rprojroot r-cran-testthat r-cran-tibble 387s r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr rpcsvc-proto unzip 387s x11-common xdg-utils zip zlib1g-dev 387s Suggested packages: 387s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 387s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 387s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev 387s liblapack-doc glibc-doc icu-doc liblzma-doc ncurses-doc readline-doc 387s libstdc++-13-doc tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib 387s r-base-html texlive-base texlive-latex-base texlive-plain-generic 387s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils 387s texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all 387s r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-biostrings 387s r-bioc-rsamtools r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 387s r-bioc-annotate r-bioc-biocparallel r-bioc-hdf5array r-bioc-genefilter 387s r-cran-lobstr r-cran-rmarkdown r-cran-profmem r-cran-r.utils 387s r-cran-data.table r-bioc-genomicalignments r-bioc-genomicfeatures 387s r-bioc-bsgenome r-bioc-rtracklayer r-bioc-gviz r-bioc-variantannotation 387s r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-bioc-keggrest 387s r-bioc-shortread r-bioc-graph r-cran-bench r-bioc-rhdf5 r-cran-covr 387s r-cran-spelling r-cran-rstudioapi r-cran-getopt r-cran-bit64 r-cran-dbi 387s r-cran-dplyr r-cran-formattable r-cran-ggplot2 r-cran-nanotime 387s r-cran-palmerpenguins r-cran-scales r-cran-stringi r-cran-survival 387s r-cran-units r-cran-vdiffr r-cran-inline r-cran-blob r-cran-here r-cran-hms 387s r-cran-htmltools r-cran-purrr r-cran-tidyr 387s Recommended packages: 387s bzip2-doc manpages manpages-dev libc-devtools libpng-tools r-recommended 387s r-doc-html r-cran-covr r-cran-cliapp r-cran-mockery r-cran-htmltools 387s r-cran-htmlwidgets r-cran-knitr r-cran-rmarkdown r-cran-rstudioapi 387s r-cran-whoami r-cran-gh r-cran-spelling r-cran-ggplot2 r-cran-unitizer 387s r-cran-dbi r-cran-dplyr r-cran-rsqlite r-cran-httr r-cran-r.rsp r-cran-sf 387s r-cran-lintr r-cran-tidyverse r-cran-base64enc r-cran-markdown 387s r-cran-r.devices r-cran-lubridate r-cran-cpp11 r-cran-mathjaxr r-cran-mockr 387s r-cran-remotes r-cran-codetools r-cran-curl r-cran-webfakes r-cran-pingr 387s r-cran-xml r-cran-usethis r-cran-shiny r-cran-xml2 r-cran-data.table 387s r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown 387s r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 387s x11-utils x11-xserver-utils 387s The following NEW packages will be installed: 387s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 387s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 387s fonts-dejavu-core fonts-dejavu-mono g++ g++-13 g++-13-aarch64-linux-gnu 387s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 387s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 387s gfortran-aarch64-linux-gnu icu-devtools libasan8 libatomic1 libblas-dev 387s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 387s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 387s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 387s libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 387s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack-dev liblapack3 liblerc4 387s liblsan0 liblzma-dev libmpc3 libncurses-dev libnsl-dev libpango-1.0-0 387s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 387s libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 387s libpng-dev libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 387s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 387s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 387s linux-libc-dev littler pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin 387s r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics 387s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-genomeinfodb 387s r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges 387s r-bioc-matrixgenerics r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 387s r-bioc-sparsematrixstats r-bioc-summarizedexperiment r-bioc-xvector 387s r-bioc-zlibbioc r-cran-abind r-cran-bitops r-cran-brio r-cran-callr 387s r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest 387s r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue r-cran-jsonlite 387s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 387s r-cran-matrixstats r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 387s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps 387s r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-rlang 387s r-cran-rprojroot r-cran-testthat r-cran-tibble r-cran-utf8 r-cran-vctrs 387s r-cran-waldo r-cran-withr rpcsvc-proto unzip x11-common xdg-utils zip 387s zlib1g-dev 387s 0 upgraded, 163 newly installed, 0 to remove and 0 not upgraded. 387s Need to get 183 MB/183 MB of archives. 387s After this operation, 506 MB of additional disk space will be used. 387s Get:1 /tmp/autopkgtest.6EXyMY/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [796 B] 387s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 387s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 388s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 388s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 388s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 388s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 388s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 388s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 388s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 388s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 388s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 388s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 388s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 388s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 388s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 388s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 388s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 388s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 388s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 388s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 388s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 388s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 388s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 388s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 389s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 389s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 389s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 389s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 389s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 389s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 389s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 389s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 389s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 389s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 389s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 389s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 389s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 389s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 389s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 389s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 389s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 389s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 389s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 389s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 389s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 389s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 389s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 389s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 390s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 390s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 390s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 390s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 390s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 390s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 390s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 390s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 390s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 390s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 390s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 390s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 390s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 390s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 390s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 390s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 390s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 390s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 390s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 390s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 390s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 390s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 390s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 390s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 390s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 390s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 390s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 390s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 390s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 390s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 390s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 390s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 390s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 390s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 390s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 390s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 390s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 390s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 390s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 390s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 390s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 390s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 390s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 390s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 390s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 390s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 390s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 390s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 390s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 390s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 390s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 391s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 391s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 391s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 391s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 391s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 391s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 391s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 391s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 391s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 392s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 392s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 392s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 392s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 392s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 392s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 392s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 393s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 393s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 393s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 393s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 393s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 393s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 393s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 393s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 393s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 393s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 393s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 393s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 393s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 393s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 393s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 394s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 394s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 394s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 394s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 394s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 394s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 394s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 394s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 394s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 394s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 394s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 394s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 394s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 394s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 394s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 394s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 394s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 394s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 394s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 394s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 394s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 394s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 394s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 394s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 394s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 394s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 394s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 394s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 394s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 394s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 394s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 394s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 396s Preconfiguring packages ... 396s Fetched 183 MB in 7s (25.2 MB/s) 396s Selecting previously unselected package libc-dev-bin. 396s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 396s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 396s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 396s Selecting previously unselected package linux-libc-dev:arm64. 396s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 396s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 396s Selecting previously unselected package libcrypt-dev:arm64. 396s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 396s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 396s Selecting previously unselected package libtirpc-dev:arm64. 396s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 396s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 396s Selecting previously unselected package libnsl-dev:arm64. 396s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 396s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 396s Selecting previously unselected package rpcsvc-proto. 396s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 396s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 396s Selecting previously unselected package libc6-dev:arm64. 396s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 396s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 397s Selecting previously unselected package libisl23:arm64. 397s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 397s Unpacking libisl23:arm64 (0.26-3) ... 397s Selecting previously unselected package libmpc3:arm64. 397s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 397s Unpacking libmpc3:arm64 (1.3.1-1) ... 397s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 397s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 397s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 397s Selecting previously unselected package cpp-13. 397s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 397s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 397s Selecting previously unselected package cpp-aarch64-linux-gnu. 397s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 397s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 397s Selecting previously unselected package cpp. 397s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 397s Unpacking cpp (4:13.2.0-7ubuntu1) ... 397s Selecting previously unselected package libcc1-0:arm64. 397s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libgomp1:arm64. 397s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libitm1:arm64. 397s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libatomic1:arm64. 397s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libasan8:arm64. 397s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package liblsan0:arm64. 397s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libtsan2:arm64. 397s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libubsan1:arm64. 397s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 397s Selecting previously unselected package libhwasan0:arm64. 397s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 397s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 398s Selecting previously unselected package libgcc-13-dev:arm64. 398s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 398s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package gcc-13. 398s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package gcc-aarch64-linux-gnu. 398s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 398s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 398s Selecting previously unselected package gcc. 398s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 398s Unpacking gcc (4:13.2.0-7ubuntu1) ... 398s Selecting previously unselected package libstdc++-13-dev:arm64. 398s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 398s Selecting previously unselected package g++-13-aarch64-linux-gnu. 398s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 398s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 399s Selecting previously unselected package g++-13. 399s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 399s Unpacking g++-13 (13.2.0-17ubuntu2) ... 399s Selecting previously unselected package g++-aarch64-linux-gnu. 399s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 399s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 399s Selecting previously unselected package g++. 399s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 399s Unpacking g++ (4:13.2.0-7ubuntu1) ... 399s Selecting previously unselected package build-essential. 399s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 399s Unpacking build-essential (12.10ubuntu1) ... 399s Selecting previously unselected package dctrl-tools. 399s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 399s Unpacking dctrl-tools (2.24-3build2) ... 399s Selecting previously unselected package fonts-dejavu-mono. 399s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 399s Unpacking fonts-dejavu-mono (2.37-8) ... 399s Selecting previously unselected package fonts-dejavu-core. 399s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 399s Unpacking fonts-dejavu-core (2.37-8) ... 399s Selecting previously unselected package fontconfig-config. 399s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 399s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 399s Selecting previously unselected package libfontconfig1:arm64. 399s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 399s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 399s Selecting previously unselected package fontconfig. 399s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 399s Unpacking fontconfig (2.15.0-1ubuntu1) ... 399s Selecting previously unselected package libgfortran5:arm64. 399s Preparing to unpack .../039-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 399s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 399s Selecting previously unselected package libgfortran-13-dev:arm64. 399s Preparing to unpack .../040-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 399s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 399s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 399s Preparing to unpack .../041-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 399s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package gfortran-13. 400s Preparing to unpack .../042-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 400s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 400s Selecting previously unselected package gfortran-aarch64-linux-gnu. 400s Preparing to unpack .../043-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package gfortran. 400s Preparing to unpack .../044-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 400s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 400s Selecting previously unselected package icu-devtools. 400s Preparing to unpack .../045-icu-devtools_74.2-1ubuntu1_arm64.deb ... 400s Unpacking icu-devtools (74.2-1ubuntu1) ... 400s Selecting previously unselected package libblas3:arm64. 400s Preparing to unpack .../046-libblas3_3.12.0-3_arm64.deb ... 400s Unpacking libblas3:arm64 (3.12.0-3) ... 400s Selecting previously unselected package libblas-dev:arm64. 400s Preparing to unpack .../047-libblas-dev_3.12.0-3_arm64.deb ... 400s Unpacking libblas-dev:arm64 (3.12.0-3) ... 400s Selecting previously unselected package libbz2-dev:arm64. 400s Preparing to unpack .../048-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 400s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 400s Selecting previously unselected package libpixman-1-0:arm64. 400s Preparing to unpack .../049-libpixman-1-0_0.42.2-1_arm64.deb ... 400s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 400s Selecting previously unselected package libxcb-render0:arm64. 400s Preparing to unpack .../050-libxcb-render0_1.15-1_arm64.deb ... 400s Unpacking libxcb-render0:arm64 (1.15-1) ... 401s Selecting previously unselected package libxcb-shm0:arm64. 401s Preparing to unpack .../051-libxcb-shm0_1.15-1_arm64.deb ... 401s Unpacking libxcb-shm0:arm64 (1.15-1) ... 401s Selecting previously unselected package libxrender1:arm64. 401s Preparing to unpack .../052-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 401s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 401s Selecting previously unselected package libcairo2:arm64. 401s Preparing to unpack .../053-libcairo2_1.18.0-1_arm64.deb ... 401s Unpacking libcairo2:arm64 (1.18.0-1) ... 401s Selecting previously unselected package libdatrie1:arm64. 401s Preparing to unpack .../054-libdatrie1_0.2.13-3_arm64.deb ... 401s Unpacking libdatrie1:arm64 (0.2.13-3) ... 401s Selecting previously unselected package libdeflate0:arm64. 401s Preparing to unpack .../055-libdeflate0_1.19-1_arm64.deb ... 401s Unpacking libdeflate0:arm64 (1.19-1) ... 401s Selecting previously unselected package libgraphite2-3:arm64. 401s Preparing to unpack .../056-libgraphite2-3_1.3.14-2_arm64.deb ... 401s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 401s Selecting previously unselected package libharfbuzz0b:arm64. 401s Preparing to unpack .../057-libharfbuzz0b_8.3.0-2_arm64.deb ... 401s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 401s Selecting previously unselected package x11-common. 401s Preparing to unpack .../058-x11-common_1%3a7.7+23ubuntu2_all.deb ... 401s Unpacking x11-common (1:7.7+23ubuntu2) ... 401s Selecting previously unselected package libice6:arm64. 401s Preparing to unpack .../059-libice6_2%3a1.0.10-1build2_arm64.deb ... 401s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 401s Selecting previously unselected package libicu-dev:arm64. 401s Preparing to unpack .../060-libicu-dev_74.2-1ubuntu1_arm64.deb ... 401s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 401s Selecting previously unselected package libjpeg-turbo8:arm64. 401s Preparing to unpack .../061-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 401s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 401s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 401s Preparing to unpack .../062-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 401s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 401s Selecting previously unselected package libjpeg8:arm64. 401s Preparing to unpack .../063-libjpeg8_8c-2ubuntu11_arm64.deb ... 401s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package libjpeg8-dev:arm64. 402s Preparing to unpack .../064-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 402s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package libjpeg-dev:arm64. 402s Preparing to unpack .../065-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 402s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 402s Selecting previously unselected package liblapack3:arm64. 402s Preparing to unpack .../066-liblapack3_3.12.0-3_arm64.deb ... 402s Unpacking liblapack3:arm64 (3.12.0-3) ... 402s Selecting previously unselected package liblapack-dev:arm64. 402s Preparing to unpack .../067-liblapack-dev_3.12.0-3_arm64.deb ... 402s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 402s Selecting previously unselected package liblerc4:arm64. 402s Preparing to unpack .../068-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 402s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 402s Selecting previously unselected package libncurses-dev:arm64. 402s Preparing to unpack .../069-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 402s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 402s Selecting previously unselected package libthai-data. 402s Preparing to unpack .../070-libthai-data_0.1.29-2_all.deb ... 402s Unpacking libthai-data (0.1.29-2) ... 402s Selecting previously unselected package libthai0:arm64. 402s Preparing to unpack .../071-libthai0_0.1.29-2_arm64.deb ... 402s Unpacking libthai0:arm64 (0.1.29-2) ... 402s Selecting previously unselected package libpango-1.0-0:arm64. 402s Preparing to unpack .../072-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 402s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 402s Selecting previously unselected package libpangoft2-1.0-0:arm64. 402s Preparing to unpack .../073-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 402s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 402s Selecting previously unselected package libpangocairo-1.0-0:arm64. 402s Preparing to unpack .../074-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 402s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 402s Selecting previously unselected package libpaper1:arm64. 402s Preparing to unpack .../075-libpaper1_1.1.29_arm64.deb ... 402s Unpacking libpaper1:arm64 (1.1.29) ... 402s Selecting previously unselected package libpaper-utils. 402s Preparing to unpack .../076-libpaper-utils_1.1.29_arm64.deb ... 402s Unpacking libpaper-utils (1.1.29) ... 402s Selecting previously unselected package libpcre2-16-0:arm64. 402s Preparing to unpack .../077-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 402s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 402s Selecting previously unselected package libpcre2-32-0:arm64. 402s Preparing to unpack .../078-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 402s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 402s Selecting previously unselected package libpcre2-posix3:arm64. 402s Preparing to unpack .../079-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 402s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 402s Selecting previously unselected package libpcre2-dev:arm64. 402s Preparing to unpack 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libsharpyuv0:arm64 (1.3.2-0.4) ... 403s Selecting previously unselected package libsm6:arm64. 403s Preparing to unpack .../086-libsm6_2%3a1.2.3-1build2_arm64.deb ... 403s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 403s Selecting previously unselected package libtcl8.6:arm64. 403s Preparing to unpack .../087-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 403s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 403s Selecting previously unselected package libjbig0:arm64. 403s Preparing to unpack .../088-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 403s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 403s Selecting previously unselected package libwebp7:arm64. 403s Preparing to unpack .../089-libwebp7_1.3.2-0.4_arm64.deb ... 403s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 403s Selecting previously unselected package libtiff6:arm64. 403s Preparing to unpack .../090-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 403s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 403s Selecting previously unselected package libxft2:arm64. 403s Preparing to unpack .../091-libxft2_2.3.6-1_arm64.deb ... 403s Unpacking libxft2:arm64 (2.3.6-1) ... 403s Selecting previously unselected package libxss1:arm64. 403s Preparing to unpack .../092-libxss1_1%3a1.2.3-1build2_arm64.deb ... 403s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 403s Selecting previously unselected package libtk8.6:arm64. 403s Preparing to unpack .../093-libtk8.6_8.6.13-2_arm64.deb ... 403s Unpacking libtk8.6:arm64 (8.6.13-2) ... 403s Selecting previously unselected package libxt6:arm64. 403s Preparing to unpack .../094-libxt6_1%3a1.2.1-1.1_arm64.deb ... 403s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 403s Selecting previously unselected package zip. 403s Preparing to unpack .../095-zip_3.0-13_arm64.deb ... 403s Unpacking zip (3.0-13) ... 403s Selecting previously unselected package unzip. 403s Preparing to unpack .../096-unzip_6.0-28ubuntu3_arm64.deb ... 403s Unpacking unzip (6.0-28ubuntu3) ... 403s Selecting previously unselected package xdg-utils. 403s Preparing to unpack .../097-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 403s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 403s Selecting previously unselected package r-base-core. 403s Preparing to unpack .../098-r-base-core_4.3.2-1build1_arm64.deb ... 403s Unpacking r-base-core (4.3.2-1build1) ... 404s Selecting previously unselected package r-cran-littler. 404s Preparing to unpack .../099-r-cran-littler_0.3.19-1_arm64.deb ... 404s Unpacking r-cran-littler (0.3.19-1) ... 404s Selecting previously unselected package littler. 404s Preparing to unpack .../100-littler_0.3.19-1_all.deb ... 404s Unpacking littler (0.3.19-1) ... 404s Selecting previously unselected package pkgconf-bin. 404s Preparing to unpack .../101-pkgconf-bin_1.8.1-2_arm64.deb ... 404s Unpacking pkgconf-bin (1.8.1-2) ... 404s Selecting previously unselected package pkgconf:arm64. 404s Preparing to unpack .../102-pkgconf_1.8.1-2_arm64.deb ... 404s Unpacking pkgconf:arm64 (1.8.1-2) ... 404s Selecting previously unselected package pkg-config:arm64. 404s Preparing to unpack .../103-pkg-config_1.8.1-2_arm64.deb ... 404s Unpacking pkg-config:arm64 (1.8.1-2) ... 404s Selecting previously unselected package liblzma-dev:arm64. 404s Preparing to unpack .../104-liblzma-dev_5.4.5-0.3_arm64.deb ... 404s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 404s Selecting previously unselected package r-base-dev. 404s Preparing to unpack .../105-r-base-dev_4.3.2-1build1_all.deb ... 404s Unpacking r-base-dev (4.3.2-1build1) ... 404s Selecting previously unselected package pkg-r-autopkgtest. 404s Preparing to unpack .../106-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 404s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 404s Selecting previously unselected package r-bioc-biocgenerics. 404s Preparing to unpack .../107-r-bioc-biocgenerics_0.48.1-2_all.deb ... 404s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 404s Selecting previously unselected package r-bioc-biobase. 404s Preparing to unpack .../108-r-bioc-biobase_2.62.0-1_arm64.deb ... 404s Unpacking r-bioc-biobase (2.62.0-1) ... 404s Selecting previously unselected package r-cran-lattice. 404s Preparing to unpack .../109-r-cran-lattice_0.22-5-1_arm64.deb ... 404s Unpacking r-cran-lattice (0.22-5-1) ... 404s Selecting previously unselected package r-cran-matrix. 404s Preparing to unpack .../110-r-cran-matrix_1.6-5-1_arm64.deb ... 404s Unpacking r-cran-matrix (1.6-5-1) ... 404s Selecting previously unselected package r-cran-matrixstats. 404s Preparing to unpack .../111-r-cran-matrixstats_1.2.0-1_arm64.deb ... 404s Unpacking r-cran-matrixstats (1.2.0-1) ... 404s Selecting previously unselected package r-bioc-matrixgenerics. 404s Preparing to unpack .../112-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 404s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 404s Selecting previously unselected package r-bioc-s4vectors. 404s Preparing to unpack .../113-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 404s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 404s Selecting previously unselected package r-bioc-iranges. 404s Preparing to unpack .../114-r-bioc-iranges_2.36.0-1_arm64.deb ... 404s Unpacking r-bioc-iranges (2.36.0-1) ... 404s Selecting previously unselected package r-cran-abind. 404s Preparing to unpack .../115-r-cran-abind_1.4-5-2_all.deb ... 404s Unpacking r-cran-abind (1.4-5-2) ... 405s Selecting previously unselected package r-cran-crayon. 405s Preparing to unpack .../116-r-cran-crayon_1.5.2-1_all.deb ... 405s Unpacking r-cran-crayon (1.5.2-1) ... 405s Selecting previously unselected package r-bioc-s4arrays. 405s Preparing to unpack .../117-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 405s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 405s Selecting previously unselected package r-bioc-zlibbioc. 405s Preparing to unpack .../118-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 405s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 405s Selecting previously unselected package r-bioc-xvector. 405s Preparing to unpack .../119-r-bioc-xvector_0.42.0-1_arm64.deb ... 405s Unpacking r-bioc-xvector (0.42.0-1) ... 405s Selecting previously unselected package r-bioc-sparsearray. 405s Preparing to unpack .../120-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 405s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 405s Selecting previously unselected package r-bioc-delayedarray. 405s Preparing to unpack .../121-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 405s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 405s Selecting previously unselected package r-cran-pkgkitten. 405s Preparing to unpack .../122-r-cran-pkgkitten_0.2.3-1_all.deb ... 405s Unpacking r-cran-pkgkitten (0.2.3-1) ... 405s Selecting previously unselected package r-cran-rcpp. 405s Preparing to unpack .../123-r-cran-rcpp_1.0.12-1_arm64.deb ... 405s Unpacking r-cran-rcpp (1.0.12-1) ... 405s Selecting previously unselected package r-bioc-sparsematrixstats. 405s Preparing to unpack .../124-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 405s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 405s Selecting previously unselected package r-bioc-delayedmatrixstats. 405s Preparing to unpack .../125-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 405s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 405s Selecting previously unselected package r-cran-bitops. 405s Preparing to unpack .../126-r-cran-bitops_1.0-7-1_arm64.deb ... 405s Unpacking r-cran-bitops (1.0-7-1) ... 405s Selecting previously unselected package r-cran-rcurl. 405s Preparing to unpack .../127-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 405s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 405s Selecting previously unselected package r-bioc-genomeinfodbdata. 405s Preparing to unpack .../128-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 405s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 405s Selecting previously unselected package r-bioc-genomeinfodb. 405s Preparing to unpack .../129-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 405s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 406s Selecting previously unselected package r-bioc-genomicranges. 406s Preparing to unpack .../130-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 406s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 406s Selecting previously unselected package r-bioc-summarizedexperiment. 406s Preparing to unpack .../131-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 406s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 406s Selecting previously unselected package r-cran-brio. 406s Preparing to unpack .../132-r-cran-brio_1.1.4-1_arm64.deb ... 406s Unpacking r-cran-brio (1.1.4-1) ... 406s Selecting previously unselected package r-cran-ps. 406s Preparing to unpack .../133-r-cran-ps_1.7.6-1_arm64.deb ... 406s Unpacking r-cran-ps (1.7.6-1) ... 406s Selecting previously unselected package r-cran-r6. 406s Preparing to unpack .../134-r-cran-r6_2.5.1-1_all.deb ... 406s Unpacking r-cran-r6 (2.5.1-1) ... 406s Selecting previously unselected package r-cran-processx. 406s Preparing to unpack .../135-r-cran-processx_3.8.3-1_arm64.deb ... 406s Unpacking r-cran-processx (3.8.3-1) ... 406s Selecting previously unselected package r-cran-callr. 406s Preparing to unpack .../136-r-cran-callr_3.7.3-2_all.deb ... 406s Unpacking r-cran-callr (3.7.3-2) ... 406s Selecting previously unselected package r-cran-cli. 406s Preparing to unpack .../137-r-cran-cli_3.6.2-1_arm64.deb ... 406s Unpacking r-cran-cli (3.6.2-1) ... 406s Selecting previously unselected package r-cran-desc. 406s Preparing to unpack .../138-r-cran-desc_1.4.3-1_all.deb ... 406s Unpacking r-cran-desc (1.4.3-1) ... 406s Selecting previously unselected package r-cran-diffobj. 406s Preparing to unpack .../139-r-cran-diffobj_0.3.5-1_arm64.deb ... 406s Unpacking r-cran-diffobj (0.3.5-1) ... 406s Selecting previously unselected package r-cran-digest. 406s Preparing to unpack .../140-r-cran-digest_0.6.34-1_arm64.deb ... 406s Unpacking r-cran-digest (0.6.34-1) ... 406s Selecting previously unselected package r-cran-evaluate. 406s Preparing to unpack .../141-r-cran-evaluate_0.23-1_all.deb ... 406s Unpacking r-cran-evaluate (0.23-1) ... 406s Selecting previously unselected package r-cran-fansi. 406s Preparing to unpack .../142-r-cran-fansi_1.0.5-1_arm64.deb ... 406s Unpacking r-cran-fansi (1.0.5-1) ... 406s Selecting previously unselected package r-cran-fs. 406s Preparing to unpack .../143-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 406s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 406s Selecting previously unselected package r-cran-glue. 406s Preparing to unpack .../144-r-cran-glue_1.7.0-1_arm64.deb ... 406s Unpacking r-cran-glue (1.7.0-1) ... 406s Selecting previously unselected package r-cran-jsonlite. 406s Preparing to unpack .../145-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 406s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 406s Selecting previously unselected package r-cran-rlang. 406s Preparing to unpack .../146-r-cran-rlang_1.1.3-1_arm64.deb ... 406s Unpacking r-cran-rlang (1.1.3-1) ... 406s Selecting previously unselected package r-cran-lifecycle. 406s Preparing to unpack .../147-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 406s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 406s Selecting previously unselected package r-cran-magrittr. 406s Preparing to unpack .../148-r-cran-magrittr_2.0.3-1_arm64.deb ... 406s Unpacking r-cran-magrittr (2.0.3-1) ... 406s Selecting previously unselected package r-cran-utf8. 407s Preparing to unpack .../149-r-cran-utf8_1.2.4-1_arm64.deb ... 407s Unpacking r-cran-utf8 (1.2.4-1) ... 407s Selecting previously unselected package r-cran-vctrs. 407s Preparing to unpack .../150-r-cran-vctrs_0.6.5-1_arm64.deb ... 407s Unpacking r-cran-vctrs (0.6.5-1) ... 407s Selecting previously unselected package r-cran-pillar. 407s Preparing to unpack .../151-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 407s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 407s Selecting previously unselected package r-cran-pkgbuild. 407s Preparing to unpack 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previously unselected package r-cran-tibble. 407s Preparing to unpack .../158-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 407s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 407s Selecting previously unselected package r-cran-rematch2. 407s Preparing to unpack .../159-r-cran-rematch2_2.1.2-2build1_all.deb ... 407s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 407s Selecting previously unselected package r-cran-waldo. 407s Preparing to unpack .../160-r-cran-waldo_0.5.2-1build1_all.deb ... 407s Unpacking r-cran-waldo (0.5.2-1build1) ... 407s Selecting previously unselected package r-cran-testthat. 407s Preparing to unpack .../161-r-cran-testthat_3.2.1-1_arm64.deb ... 407s Unpacking r-cran-testthat (3.2.1-1) ... 407s Selecting previously unselected package autopkgtest-satdep. 407s Preparing to unpack .../162-1-autopkgtest-satdep.deb ... 407s Unpacking autopkgtest-satdep (0) ... 407s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 407s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 407s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 407s Setting up libpaper1:arm64 (1.1.29) ... 408s 408s Creating config file /etc/papersize with new version 408s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 408s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 408s Setting up libdatrie1:arm64 (0.2.13-3) ... 408s Setting up libxcb-render0:arm64 (1.15-1) ... 408s Setting up unzip (6.0-28ubuntu3) ... 408s Setting up x11-common (1:7.7+23ubuntu2) ... 408s Setting up libdeflate0:arm64 (1.19-1) ... 408s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 408s Setting up libxcb-shm0:arm64 (1.15-1) ... 408s Setting up libpaper-utils (1.1.29) ... 408s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 408s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 408s Setting up zip (3.0-13) ... 408s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 408s Setting up libblas3:arm64 (3.12.0-3) ... 408s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 408s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 408s Setting up libpkgconf3:arm64 (1.8.1-2) ... 408s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 408s Setting up fonts-dejavu-mono (2.37-8) ... 408s Setting up libmpc3:arm64 (1.3.1-1) ... 408s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 408s Setting up icu-devtools (74.2-1ubuntu1) ... 408s Setting up fonts-dejavu-core (2.37-8) ... 408s Setting up pkgconf-bin (1.8.1-2) ... 408s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 408s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libwebp7:arm64 (1.3.2-0.4) ... 408s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 408s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 408s Setting up libnsl-dev:arm64 (1.3.0-3) ... 408s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 408s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 408s Setting up libthai-data (0.1.29-2) ... 408s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 408s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libisl23:arm64 (0.26-3) ... 408s Setting up libc-dev-bin (2.39-0ubuntu2) ... 408s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 408s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 408s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 408s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libblas-dev:arm64 (3.12.0-3) ... 408s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 408s Setting up dctrl-tools (2.24-3build2) ... 408s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 408s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 408s Setting up libice6:arm64 (2:1.0.10-1build2) ... 408s Setting up liblapack3:arm64 (3.12.0-3) ... 408s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 408s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 408s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 408s Setting up pkgconf:arm64 (1.8.1-2) ... 408s Setting up libthai0:arm64 (0.1.29-2) ... 408s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 408s Setting up liblapack-dev:arm64 (3.12.0-3) ... 408s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 408s Setting up pkg-config:arm64 (1.8.1-2) ... 408s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 408s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 408s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 408s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 408s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 408s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 408s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 408s Setting up fontconfig (2.15.0-1ubuntu1) ... 411s Regenerating fonts cache... done. 411s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 411s Setting up libxft2:arm64 (2.3.6-1) ... 411s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 411s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 411s Setting up cpp-13 (13.2.0-17ubuntu2) ... 411s Setting up libtk8.6:arm64 (8.6.13-2) ... 411s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 411s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 411s Setting up libreadline-dev:arm64 (8.2-3) ... 411s Setting up libcairo2:arm64 (1.18.0-1) ... 411s Setting up gcc-13 (13.2.0-17ubuntu2) ... 411s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 411s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 411s Setting up cpp (4:13.2.0-7ubuntu1) ... 411s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 411s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 411s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 411s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 411s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 411s Setting up g++-13 (13.2.0-17ubuntu2) ... 411s Setting up libpng-dev:arm64 (1.6.43-1) ... 411s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 411s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 411s Setting up gcc (4:13.2.0-7ubuntu1) ... 411s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 411s Setting up r-base-core (4.3.2-1build1) ... 411s 411s Creating config file /etc/R/Renviron with new version 411s Setting up r-cran-crayon (1.5.2-1) ... 411s Setting up r-cran-lattice (0.22-5-1) ... 411s Setting up r-cran-ps (1.7.6-1) ... 411s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 411s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 411s Setting up r-cran-r6 (2.5.1-1) ... 411s Setting up r-cran-pkgkitten (0.2.3-1) ... 411s Setting up r-cran-magrittr (2.0.3-1) ... 411s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 411s Setting up r-cran-littler (0.3.19-1) ... 411s Setting up r-cran-fs (1.6.3+dfsg-1) ... 411s Setting up r-cran-rcpp (1.0.12-1) ... 411s Setting up r-cran-brio (1.1.4-1) ... 411s Setting up r-cran-diffobj (0.3.5-1) ... 411s Setting up r-bioc-biocgenerics (0.48.1-2) ... 411s Setting up r-cran-rlang (1.1.3-1) ... 411s Setting up r-cran-matrixstats (1.2.0-1) ... 411s Setting up littler (0.3.19-1) ... 411s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 411s Setting up r-cran-withr (2.5.0-1) ... 411s Setting up r-cran-processx (3.8.3-1) ... 411s Setting up r-cran-praise (1.0.0-4build1) ... 411s Setting up r-cran-abind (1.4-5-2) ... 411s Setting up r-cran-digest (0.6.34-1) ... 411s Setting up r-cran-evaluate (0.23-1) ... 411s Setting up r-cran-fansi (1.0.5-1) ... 411s Setting up r-cran-glue (1.7.0-1) ... 411s Setting up r-cran-cli (3.6.2-1) ... 411s Setting up gfortran (4:13.2.0-7ubuntu1) ... 411s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 411s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 411s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 411s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 411s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 411s Setting up r-cran-bitops (1.0-7-1) ... 411s Setting up r-cran-rprojroot (2.0.4-1) ... 411s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 411s Setting up r-bioc-biobase (2.62.0-1) ... 411s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 411s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 411s Setting up r-cran-utf8 (1.2.4-1) ... 411s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 411s Setting up r-cran-matrix (1.6-5-1) ... 411s Setting up g++ (4:13.2.0-7ubuntu1) ... 411s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 411s Setting up build-essential (12.10ubuntu1) ... 411s Setting up r-bioc-iranges (2.36.0-1) ... 411s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 411s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 411s Setting up r-cran-vctrs (0.6.5-1) ... 411s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 411s Setting up r-base-dev (4.3.2-1build1) ... 411s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 411s Setting up r-cran-callr (3.7.3-2) ... 411s Setting up r-cran-desc (1.4.3-1) ... 411s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 411s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 411s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 411s Setting up r-bioc-xvector (0.42.0-1) ... 411s Setting up r-cran-pkgbuild (1.4.3-1) ... 411s Setting up r-cran-pkgload (1.3.4-1) ... 411s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 411s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 411s Setting up r-cran-rematch2 (2.1.2-2build1) ... 411s Setting up r-cran-waldo (0.5.2-1build1) ... 411s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 411s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 411s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 411s Setting up r-cran-testthat (3.2.1-1) ... 411s Setting up autopkgtest-satdep (0) ... 411s Processing triggers for man-db (2.12.0-3) ... 412s Processing triggers for install-info (7.1-3) ... 413s Processing triggers for libc-bin (2.39-0ubuntu2) ... 420s (Reading database ... 85762 files and directories currently installed.) 420s Removing autopkgtest-satdep (0) ... 421s autopkgtest [17:43:30]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 421s autopkgtest [17:43:30]: test pkg-r-autopkgtest: [----------------------- 421s Test: Try to load the R library MatrixGenerics 421s 421s R version 4.3.2 (2023-10-31) -- "Eye Holes" 421s Copyright (C) 2023 The R Foundation for Statistical Computing 421s Platform: aarch64-unknown-linux-gnu (64-bit) 421s 421s R is free software and comes with ABSOLUTELY NO WARRANTY. 421s You are welcome to redistribute it under certain conditions. 421s Type 'license()' or 'licence()' for distribution details. 421s 421s R is a collaborative project with many contributors. 421s Type 'contributors()' for more information and 421s 'citation()' on how to cite R or R packages in publications. 421s 421s Type 'demo()' for some demos, 'help()' for on-line help, or 421s 'help.start()' for an HTML browser interface to help. 421s Type 'q()' to quit R. 421s 421s > library('MatrixGenerics') 421s Loading required package: matrixStats 422s 422s Attaching package: ‘MatrixGenerics’ 422s 422s The following objects are masked from ‘package:matrixStats’: 422s 422s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 422s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 422s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 422s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 422s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 422s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 422s colWeightedMeans, colWeightedMedians, colWeightedSds, 422s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 422s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 422s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 422s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 422s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 422s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 422s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 422s rowWeightedSds, rowWeightedVars 422s 422s > 422s > 422s Other tests are currently unsupported! 422s They will be progressively added. 422s autopkgtest [17:43:31]: test pkg-r-autopkgtest: -----------------------] 422s autopkgtest [17:43:31]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 422s pkg-r-autopkgtest PASS 423s autopkgtest [17:43:32]: @@@@@@@@@@@@@@@@@@@@ summary 423s pkg-r-autopkgtest PASS 447s Creating nova instance adt-noble-arm64-r-bioc-matrixgenerics-20240316-173629-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...