0s autopkgtest [17:35:54]: starting date and time: 2024-03-16 17:35:54+0000
  0s autopkgtest [17:35:54]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:35:54]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.xg2k3m9c/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-isoformswitchanalyzer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-isoformswitchanalyzer-20240316-173554-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
 88s autopkgtest [17:37:22]: testbed dpkg architecture: arm64
 88s autopkgtest [17:37:22]: testbed apt version: 2.7.12
 88s autopkgtest [17:37:22]: @@@@@@@@@@@@@@@@@@@@ test bed setup
 90s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
 95s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
 95s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
 95s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
 96s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
 96s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
 96s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
 96s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
 96s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
 96s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
 96s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
 96s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
101s Fetched 9060 kB in 8s (1161 kB/s)
101s Reading package lists...
105s Reading package lists...
105s Building dependency tree...
105s Reading state information...
106s Calculating upgrade...
106s The following packages will be REMOVED:
106s   libglib2.0-0 libssl3
106s The following NEW packages will be installed:
106s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
106s The following packages have been kept back:
106s   curl
106s The following packages will be upgraded:
106s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
106s   ubuntu-minimal ubuntu-standard
106s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
106s Need to get 4613 kB of archives.
106s After this operation, 211 kB of additional disk space will be used.
106s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
106s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
107s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
107s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
107s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
107s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
107s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
107s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
107s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
107s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
109s Fetched 4613 kB in 1s (6596 kB/s)
109s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
109s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
109s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
110s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
110s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
110s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
110s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
110s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
110s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
110s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
110s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
110s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
110s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
110s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
110s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
110s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
110s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
110s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
110s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
110s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
110s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
110s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
110s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
110s  fwupd depends on libglib2.0-0 (>= 2.79.0).
110s  bolt depends on libglib2.0-0 (>= 2.56.0).
110s 
110s (Reading database ... 
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110s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
110s Selecting previously unselected package libglib2.0-0t64:arm64.
110s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
110s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
110s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
110s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
110s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
110s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
110s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
110s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
110s  wget depends on libssl3 (>= 3.0.0).
110s  u-boot-tools depends on libssl3 (>= 3.0.0).
110s  tnftp depends on libssl3 (>= 3.0.0).
110s  tcpdump depends on libssl3 (>= 3.0.0).
110s  systemd-resolved depends on libssl3 (>= 3.0.0).
110s  systemd depends on libssl3 (>= 3.0.0).
110s  sudo depends on libssl3 (>= 3.0.0).
110s  sbsigntool depends on libssl3 (>= 3.0.0).
110s  rsync depends on libssl3 (>= 3.0.0).
110s  python3-cryptography depends on libssl3 (>= 3.0.0).
110s  openssh-server depends on libssl3 (>= 3.0.10).
110s  openssh-client depends on libssl3 (>= 3.0.10).
110s  mtd-utils depends on libssl3 (>= 3.0.0).
110s  mokutil depends on libssl3 (>= 3.0.0).
110s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
110s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
110s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
110s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
110s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
110s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
110s  libnvme1 depends on libssl3 (>= 3.0.0).
110s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
110s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
110s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
110s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
110s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
110s  kmod depends on libssl3 (>= 3.0.0).
110s  dhcpcd-base depends on libssl3 (>= 3.0.0).
110s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
110s 
110s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
110s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
110s Selecting previously unselected package libssl3t64:arm64.
110s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
110s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
110s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
110s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
110s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
110s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
110s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
110s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
110s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
110s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
110s Unpacking ubuntu-minimal (1.536) over (1.535) ...
110s Selecting previously unselected package xdg-user-dirs.
110s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
110s Unpacking xdg-user-dirs (0.18-1) ...
110s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
110s Unpacking ubuntu-standard (1.536) over (1.535) ...
110s Setting up ubuntu-minimal (1.536) ...
110s Setting up xdg-user-dirs (0.18-1) ...
110s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
110s Setting up libtirpc-common (1.3.4+ds-1.1) ...
110s Setting up ubuntu-standard (1.536) ...
110s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
111s No schema files found: doing nothing.
111s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
111s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
111s Setting up openssl (3.0.13-0ubuntu1) ...
111s Setting up readline-common (8.2-3.1) ...
111s Processing triggers for man-db (2.12.0-3) ...
111s Processing triggers for install-info (7.1-3) ...
112s Processing triggers for libc-bin (2.39-0ubuntu2) ...
112s Reading package lists...
112s Building dependency tree...
112s Reading state information...
113s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
114s sh: Attempting to set up Debian/Ubuntu apt sources automatically
114s sh: Distribution appears to be Ubuntu
114s Reading package lists...
115s Building dependency tree...
115s Reading state information...
115s eatmydata is already the newest version (131-1).
115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
115s Reading package lists...
115s Building dependency tree...
115s Reading state information...
116s dbus is already the newest version (1.14.10-4ubuntu1).
116s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
116s Reading package lists...
117s Building dependency tree...
117s Reading state information...
118s rng-tools-debian is already the newest version (2.4).
118s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
118s Reading package lists...
119s Building dependency tree...
119s Reading state information...
119s The following packages will be REMOVED:
119s   cloud-init* python3-configobj* python3-debconf*
121s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded.
121s After this operation, 3252 kB disk space will be freed.
121s (Reading database ... 
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(Reading database ... 74774 files and directories currently installed.)
121s Removing cloud-init (24.1.1-0ubuntu1) ...
123s Removing python3-configobj (5.0.8-3) ...
124s Removing python3-debconf (1.5.86) ...
125s Processing triggers for man-db (2.12.0-3) ...
126s (Reading database ... 
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(Reading database ... 100%
(Reading database ... 74385 files and directories currently installed.)
126s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ...
127s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed
127s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ...
127s invoke-rc.d: policy-rc.d denied execution of try-restart.
127s Reading package lists...
128s Building dependency tree...
128s Reading state information...
128s linux-generic is already the newest version (6.8.0-11.11+1).
128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
129s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
129s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
129s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
131s Reading package lists...
131s Reading package lists...
131s Building dependency tree...
131s Reading state information...
132s Calculating upgrade...
132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
132s Reading package lists...
132s Building dependency tree...
132s Reading state information...
133s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
133s autopkgtest [17:38:07]: rebooting testbed after setup commands that affected boot
317s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds...
330s autopkgtest [17:41:24]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
335s autopkgtest [17:41:29]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-isoformswitchanalyzer
338s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (dsc) [2863 B]
338s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (tar) [3120 kB]
338s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (diff) [3032 B]
338s gpgv: Signature made Fri Dec  8 14:54:19 2023 UTC
338s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
338s gpgv:                issuer "tille@debian.org"
338s gpgv: Can't check signature: No public key
338s dpkg-source: warning: cannot verify inline signature for ./r-bioc-isoformswitchanalyzer_2.2.0+ds-1.dsc: no acceptable signature found
338s autopkgtest [17:41:32]: testing package r-bioc-isoformswitchanalyzer version 2.2.0+ds-1
339s autopkgtest [17:41:33]: build not needed
340s autopkgtest [17:41:34]: test pkg-r-autopkgtest: preparing testbed
342s Reading package lists...
343s Building dependency tree...
343s Reading state information...
343s Starting pkgProblemResolver with broken count: 0
343s Starting 2 pkgProblemResolver with broken count: 0
343s Done
343s The following additional packages will be installed:
343s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
343s   dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono
343s   fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13
343s   g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13
343s   gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
343s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
343s   javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev
343s   libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0
343s   libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev
343s   libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b
343s   libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev
343s   libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap
343s   libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
343s   libjs-jquery-datatables libjs-jquery-datatables-extensions
343s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
343s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
343s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
343s   liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
343s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
343s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
343s   libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6
343s   libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
343s   libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
343s   libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass
343s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
343s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
343s   r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub
343s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
343s   r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings
343s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger
343s   r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
343s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
343s   r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges
343s   r-bioc-isoformswitchanalyzer r-bioc-keggrest r-bioc-limma
343s   r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib
343s   r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
343s   r-bioc-saturn r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva
343s   r-bioc-tximeta r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind
343s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit
343s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-bslib
343s   r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
343s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl
343s   r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt
344s   r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
344s   r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
344s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
344s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms
344s   r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter
344s   r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
344s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
344s   r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass
344s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
344s   r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar
344s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png
344s   r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6
344s   r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo
344s   r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson
344s   r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales
344s   r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi
344s   r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr
344s   r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs
344s   r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun
344s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
344s   x11-common xdg-utils zip zlib1g-dev
344s Suggested packages:
344s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
344s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
344s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
344s   | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc
344s   libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev
344s   libboost-context1.83-dev libboost-contract1.83-dev
344s   libboost-coroutine1.83-dev libboost-date-time1.83-dev
344s   libboost-exception1.83-dev libboost-fiber1.83-dev
344s   libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev
344s   libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev
344s   libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev
344s   libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev
344s   libboost-numpy1.83-dev libboost-program-options1.83-dev
344s   libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev
344s   libboost-serialization1.83-dev libboost-stacktrace1.83-dev
344s   libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev
344s   libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev
344s   libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev
344s   glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix
344s   libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc
344s   tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex
344s   pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff
344s   ghc php python ruby libjs-katex citation-style-language-styles elpa-ess
344s   r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
344s   texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
344s   texlive-extra-utils texinfo r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit
344s   r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-variantannotation
344s   r-bioc-experimenthub r-bioc-all r-bioc-affy r-cran-foreach r-cran-bbmisc
344s   r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-data.table
344s   r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-cran-lobstr
344s   r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximportdata
344s   r-bioc-glmgampoi r-cran-roxygen2 r-bioc-rhdf5 r-cran-seuratobject
344s   r-bioc-ggbio r-bioc-gviz r-cran-class r-cran-r.utils r-cran-markdown
344s   r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats
344s   r-cran-covr r-bioc-bladderbatch r-bioc-fishpond r-cran-devtools r-cran-ff
344s   r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd
344s   r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-lubridate
344s   r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam
344s   r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units
344s   r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling
344s   r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild
344s   r-cran-pkgload r-cran-plm r-cran-zoo
344s Recommended packages:
344s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
344s   r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-thematic
344s   r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps
344s   r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio
344s   r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils
344s   r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future r-cran-testit
344s   w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin
344s   r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis
344s   r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite
344s   r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg
344s   r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl
344s   r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr
344s   r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-future.apply
344s   r-cran-lubridate r-cran-doparallel r-cran-foreach r-cran-iterators
344s   r-cran-itertools r-cran-runit r-cran-usethis r-cran-dygraphs
344s   r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert r-cran-gh
344s   r-cran-rvest r-cran-dichromat r-cran-data.table r-cran-mockr
344s   r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv
344s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
344s   x11-xserver-utils
344s The following NEW packages will be installed:
344s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
344s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
344s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
344s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu
344s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
344s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
344s   gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8
344s   libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev
344s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1
344s   libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5
344s   libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23
344s   libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8
344s   libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim
344s   libjs-highlight.js libjs-jquery libjs-jquery-datatables
344s   libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui
344s   libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr
344s   libjs-popper.js libjs-prettify libjs-sifter.js
344s   libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4
344s   liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
344s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
344s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
344s   libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6
344s   libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev
344s   libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2
344s   libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass
344s   node-html5shiv node-normalize.css pandoc pandoc-data pkg-config
344s   pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate
344s   r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub
344s   r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
344s   r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings
344s   r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger
344s   r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb
344s   r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures
344s   r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges
344s   r-bioc-isoformswitchanalyzer r-bioc-keggrest r-bioc-limma
344s   r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib
344s   r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
344s   r-bioc-saturn r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva
344s   r-bioc-tximeta r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind
344s   r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit
344s   r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-bslib
344s   r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
344s   r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl
344s   r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt
344s   r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap
344s   r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs
344s   r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2
344s   r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms
344s   r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter
344s   r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling
344s   r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle
344s   r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass
344s   r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime
344s   r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar
344s   r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png
344s   r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6
344s   r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo
344s   r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson
344s   r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales
344s   r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi
344s   r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr
344s   r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs
344s   r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun
344s   r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip
344s   x11-common xdg-utils zip zlib1g-dev
344s 0 upgraded, 305 newly installed, 0 to remove and 0 not upgraded.
344s Need to get 354 MB/354 MB of archives.
344s After this operation, 1149 MB of additional disk space will be used.
344s Get:1 /tmp/autopkgtest.MfKwcL/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B]
344s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
344s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
345s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
345s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB]
345s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
345s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
345s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
345s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
345s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
345s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
345s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
345s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
345s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
345s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
345s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
345s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
345s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
345s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
345s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
345s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
345s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
345s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
345s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
345s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
346s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
346s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
346s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
346s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
346s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
346s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
346s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
346s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
346s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
346s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
346s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
346s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
346s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
346s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
346s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
346s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
346s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
346s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
346s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
346s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
346s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
346s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
346s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
346s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
346s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
346s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
346s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
346s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
346s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB]
347s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B]
347s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
347s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
347s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
347s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
347s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
347s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
347s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
347s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
347s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
347s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
347s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
347s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
347s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
347s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
347s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
347s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
347s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
347s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
347s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
347s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
347s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
347s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
347s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
347s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
347s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
347s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
347s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
347s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
347s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
347s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
347s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
347s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
347s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
347s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
347s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
347s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
347s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
347s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
347s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
347s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
347s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
347s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
347s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
347s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
347s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
347s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
347s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
348s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
348s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
348s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
348s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
348s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB]
348s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB]
348s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
348s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
348s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
348s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
348s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
348s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
348s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
348s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
348s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
348s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB]
348s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
348s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
348s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
348s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB]
349s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
349s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
349s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
349s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
349s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
349s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
349s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
350s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
350s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
350s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
350s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
350s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B]
350s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
350s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
350s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB]
350s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB]
350s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB]
350s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB]
350s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB]
350s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB]
350s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
350s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
350s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
350s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
350s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
351s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB]
351s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
351s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
351s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
351s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB]
351s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB]
351s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB]
351s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB]
351s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB]
351s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
351s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
351s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB]
351s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB]
351s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB]
351s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
351s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB]
351s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB]
351s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B]
351s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB]
351s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB]
351s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB]
351s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB]
351s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB]
351s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
351s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB]
352s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
352s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB]
352s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB]
352s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
352s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB]
352s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB]
352s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB]
352s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB]
352s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB]
352s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
352s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB]
352s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB]
352s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB]
352s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB]
352s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
352s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB]
352s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB]
352s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB]
352s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
352s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
352s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB]
352s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB]
352s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB]
352s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB]
353s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB]
353s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB]
353s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
353s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
353s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
353s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
353s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
353s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
353s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
353s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
353s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
353s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
353s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
353s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
353s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
353s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
353s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
353s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
353s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
353s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
353s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
353s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
354s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
354s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
354s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
354s Get:222 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
354s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
354s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
354s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
354s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
354s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
354s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB]
354s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB]
354s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB]
354s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB]
354s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB]
354s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB]
354s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB]
354s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB]
354s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB]
354s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB]
354s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB]
354s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B]
354s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB]
354s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB]
354s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB]
354s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB]
354s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB]
354s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB]
354s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB]
354s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB]
354s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB]
354s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
354s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB]
354s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB]
354s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB]
354s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB]
354s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB]
355s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB]
355s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB]
355s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB]
355s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB]
355s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB]
355s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB]
355s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB]
355s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB]
355s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB]
355s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB]
355s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB]
355s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB]
355s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB]
355s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB]
355s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB]
355s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB]
355s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB]
356s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB]
356s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB]
356s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB]
356s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB]
356s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB]
356s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB]
356s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB]
356s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB]
356s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB]
356s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB]
356s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB]
356s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB]
356s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB]
356s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB]
356s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB]
356s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB]
356s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB]
356s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfdr all 1.1-8-2 [306 kB]
356s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB]
356s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB]
356s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-saturn all 1.10.0+dfsg-1 [2954 kB]
356s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sva arm64 3.50.0-1 [465 kB]
356s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB]
356s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB]
356s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB]
357s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB]
357s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-pfamanalyzer all 1.2.0+dfsg-1 [32.4 kB]
357s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB]
357s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB]
357s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB]
357s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-venndiagram all 1.7.3-1 [266 kB]
357s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximport all 1.30.0+dfsg-1 [89.5 kB]
357s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximeta all 1.20.3+dfsg-1 [502 kB]
357s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-isoformswitchanalyzer arm64 2.2.0+ds-1 [4106 kB]
362s Preconfiguring packages ...
363s Fetched 354 MB in 15s (24.2 MB/s)
364s Selecting previously unselected package libc-dev-bin.
364s (Reading database ... 
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(Reading database ... 74330 files and directories currently installed.)
364s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
364s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
364s Selecting previously unselected package linux-libc-dev:arm64.
365s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ...
365s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
365s Selecting previously unselected package libcrypt-dev:arm64.
365s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
365s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
365s Selecting previously unselected package libtirpc-dev:arm64.
365s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ...
365s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ...
365s Selecting previously unselected package libnsl-dev:arm64.
365s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ...
365s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
365s Selecting previously unselected package rpcsvc-proto.
365s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
365s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
365s Selecting previously unselected package libc6-dev:arm64.
366s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ...
366s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
366s Selecting previously unselected package libisl23:arm64.
366s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ...
366s Unpacking libisl23:arm64 (0.26-3) ...
366s Selecting previously unselected package libmpc3:arm64.
366s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ...
366s Unpacking libmpc3:arm64 (1.3.1-1) ...
366s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
367s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
367s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
367s Selecting previously unselected package cpp-13.
367s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
367s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
367s Selecting previously unselected package cpp-aarch64-linux-gnu.
367s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
367s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
367s Selecting previously unselected package cpp.
367s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
367s Unpacking cpp (4:13.2.0-7ubuntu1) ...
367s Selecting previously unselected package libcc1-0:arm64.
367s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
367s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
367s Selecting previously unselected package libgomp1:arm64.
367s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
367s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
367s Selecting previously unselected package libitm1:arm64.
367s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ...
367s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
367s Selecting previously unselected package libatomic1:arm64.
367s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
367s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
367s Selecting previously unselected package libasan8:arm64.
368s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package liblsan0:arm64.
368s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package libtsan2:arm64.
368s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package libubsan1:arm64.
368s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package libhwasan0:arm64.
368s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
368s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
368s Selecting previously unselected package libgcc-13-dev:arm64.
369s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
369s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
369s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
369s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
369s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
369s Selecting previously unselected package gcc-13.
369s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
369s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
369s Selecting previously unselected package gcc-aarch64-linux-gnu.
370s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
370s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
370s Selecting previously unselected package gcc.
370s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
370s Unpacking gcc (4:13.2.0-7ubuntu1) ...
370s Selecting previously unselected package libstdc++-13-dev:arm64.
370s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ...
370s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ...
370s Selecting previously unselected package g++-13-aarch64-linux-gnu.
370s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
370s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
370s Selecting previously unselected package g++-13.
371s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ...
371s Unpacking g++-13 (13.2.0-17ubuntu2) ...
371s Selecting previously unselected package g++-aarch64-linux-gnu.
371s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
371s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
371s Selecting previously unselected package g++.
371s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ...
371s Unpacking g++ (4:13.2.0-7ubuntu1) ...
371s Selecting previously unselected package build-essential.
372s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ...
372s Unpacking build-essential (12.10ubuntu1) ...
372s Selecting previously unselected package dctrl-tools.
372s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ...
372s Unpacking dctrl-tools (2.24-3build2) ...
372s Selecting previously unselected package fonts-dejavu-mono.
372s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ...
372s Unpacking fonts-dejavu-mono (2.37-8) ...
372s Selecting previously unselected package fonts-dejavu-core.
373s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ...
373s Unpacking fonts-dejavu-core (2.37-8) ...
373s Selecting previously unselected package fontconfig-config.
373s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ...
373s Unpacking fontconfig-config (2.15.0-1ubuntu1) ...
373s Selecting previously unselected package libfontconfig1:arm64.
374s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ...
374s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ...
374s Selecting previously unselected package fontconfig.
374s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ...
374s Unpacking fontconfig (2.15.0-1ubuntu1) ...
374s Selecting previously unselected package fonts-font-awesome.
374s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ...
374s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ...
374s Selecting previously unselected package fonts-glyphicons-halflings.
374s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ...
374s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ...
374s Selecting previously unselected package fonts-mathjax.
374s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ...
374s Unpacking fonts-mathjax (2.7.9+dfsg-1) ...
375s Selecting previously unselected package libgfortran5:arm64.
375s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ...
375s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ...
375s Selecting previously unselected package libgfortran-13-dev:arm64.
375s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ...
375s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ...
375s Selecting previously unselected package gfortran-13-aarch64-linux-gnu.
375s Preparing to unpack .../044-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
375s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
375s Selecting previously unselected package gfortran-13.
375s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_arm64.deb ...
375s Unpacking gfortran-13 (13.2.0-17ubuntu2) ...
375s Selecting previously unselected package gfortran-aarch64-linux-gnu.
375s Preparing to unpack .../046-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
375s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
375s Selecting previously unselected package gfortran.
375s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ...
375s Unpacking gfortran (4:13.2.0-7ubuntu1) ...
375s Selecting previously unselected package icu-devtools.
376s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ...
376s Unpacking icu-devtools (74.2-1ubuntu1) ...
376s Selecting previously unselected package javascript-common.
376s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ...
376s Unpacking javascript-common (11+nmu1) ...
376s Selecting previously unselected package libblas3:arm64.
376s Preparing to unpack .../050-libblas3_3.12.0-3_arm64.deb ...
376s Unpacking libblas3:arm64 (3.12.0-3) ...
376s Selecting previously unselected package libblas-dev:arm64.
376s Preparing to unpack .../051-libblas-dev_3.12.0-3_arm64.deb ...
376s Unpacking libblas-dev:arm64 (3.12.0-3) ...
376s Selecting previously unselected package libboost1.83-dev:arm64.
376s Preparing to unpack .../052-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ...
376s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ...
378s Selecting previously unselected package libboost-dev:arm64.
378s Preparing to unpack .../053-libboost-dev_1.83.0.1ubuntu2_arm64.deb ...
378s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ...
378s Selecting previously unselected package libbz2-dev:arm64.
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394s Selecting previously unselected package r-cran-cli.
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395s Selecting previously unselected package r-cran-cachem.
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395s Selecting previously unselected package r-cran-memoise.
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395s Selecting previously unselected package r-cran-pkgconfig.
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395s Selecting previously unselected package r-cran-plogr.
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395s Unpacking r-cran-plogr (0.2.0-3build1) ...
395s Selecting previously unselected package r-cran-cpp11.
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395s Selecting previously unselected package r-cran-rsqlite.
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395s Selecting previously unselected package r-cran-curl.
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395s Unpacking r-cran-curl (5.2.0+dfsg-1) ...
395s Selecting previously unselected package r-cran-jsonlite.
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396s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ...
396s Selecting previously unselected package r-cran-mime.
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396s Unpacking r-cran-mime (0.12-1) ...
396s Selecting previously unselected package r-cran-sys.
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396s Selecting previously unselected package r-cran-askpass.
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396s Selecting previously unselected package r-cran-openssl.
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397s Unpacking r-cran-openssl (2.1.1+dfsg-2) ...
397s Selecting previously unselected package r-cran-r6.
397s Preparing to unpack .../160-r-cran-r6_2.5.1-1_all.deb ...
397s Unpacking r-cran-r6 (2.5.1-1) ...
397s Selecting previously unselected package r-cran-httr.
397s Preparing to unpack .../161-r-cran-httr_1.4.7+dfsg-1_all.deb ...
397s Unpacking r-cran-httr (1.4.7+dfsg-1) ...
397s Selecting previously unselected package r-cran-png.
397s Preparing to unpack .../162-r-cran-png_0.1-8-1_arm64.deb ...
397s Unpacking r-cran-png (0.1-8-1) ...
397s Selecting previously unselected package r-bioc-zlibbioc.
397s Preparing to unpack .../163-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ...
397s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ...
397s Selecting previously unselected package r-bioc-xvector.
398s Preparing to unpack .../164-r-bioc-xvector_0.42.0-1_arm64.deb ...
398s Unpacking r-bioc-xvector (0.42.0-1) ...
398s Selecting previously unselected package r-cran-bitops.
398s Preparing to unpack .../165-r-cran-bitops_1.0-7-1_arm64.deb ...
398s Unpacking r-cran-bitops (1.0-7-1) ...
398s Selecting previously unselected package r-cran-rcurl.
398s Preparing to unpack .../166-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ...
398s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ...
398s Selecting previously unselected package r-bioc-genomeinfodbdata.
398s Preparing to unpack .../167-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ...
398s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ...
398s Selecting previously unselected package r-bioc-genomeinfodb.
399s Preparing to unpack .../168-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ...
399s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
399s Selecting previously unselected package r-cran-crayon.
399s Preparing to unpack .../169-r-cran-crayon_1.5.2-1_all.deb ...
399s Unpacking r-cran-crayon (1.5.2-1) ...
399s Selecting previously unselected package r-bioc-biostrings.
399s Preparing to unpack .../170-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ...
399s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ...
400s Selecting previously unselected package r-bioc-keggrest.
400s Preparing to unpack .../171-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ...
400s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ...
400s Selecting previously unselected package r-bioc-annotationdbi.
400s Preparing to unpack .../172-r-bioc-annotationdbi_1.64.1-1_all.deb ...
400s Unpacking r-bioc-annotationdbi (1.64.1-1) ...
400s Selecting previously unselected package r-cran-xml.
400s Preparing to unpack .../173-r-cran-xml_3.99-0.16.1-1_arm64.deb ...
400s Unpacking r-cran-xml (3.99-0.16.1-1) ...
400s Selecting previously unselected package r-cran-xtable.
400s Preparing to unpack .../174-r-cran-xtable_1%3a1.8-4-2_all.deb ...
400s Unpacking r-cran-xtable (1:1.8-4-2) ...
400s Selecting previously unselected package r-bioc-annotate.
400s Preparing to unpack .../175-r-bioc-annotate_1.80.0+dfsg-1_all.deb ...
400s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ...
400s Selecting previously unselected package r-bioc-genomicranges.
400s Preparing to unpack .../176-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ...
400s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ...
400s Selecting previously unselected package r-cran-lazyeval.
400s Preparing to unpack .../177-r-cran-lazyeval_0.2.2-1build1_arm64.deb ...
400s Unpacking r-cran-lazyeval (0.2.2-1build1) ...
400s Selecting previously unselected package r-bioc-annotationfilter.
400s Preparing to unpack .../178-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ...
400s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ...
400s Selecting previously unselected package r-cran-generics.
400s Preparing to unpack .../179-r-cran-generics_0.1.3-1_all.deb ...
400s Unpacking r-cran-generics (0.1.3-1) ...
400s Selecting previously unselected package r-cran-magrittr.
401s Preparing to unpack .../180-r-cran-magrittr_2.0.3-1_arm64.deb ...
401s Unpacking r-cran-magrittr (2.0.3-1) ...
401s Selecting previously unselected package r-cran-fansi.
401s Preparing to unpack .../181-r-cran-fansi_1.0.5-1_arm64.deb ...
401s Unpacking r-cran-fansi (1.0.5-1) ...
401s Selecting previously unselected package r-cran-utf8.
401s Preparing to unpack .../182-r-cran-utf8_1.2.4-1_arm64.deb ...
401s Unpacking r-cran-utf8 (1.2.4-1) ...
401s Selecting previously unselected package r-cran-pillar.
401s Preparing to unpack .../183-r-cran-pillar_1.9.0+dfsg-1_all.deb ...
401s Unpacking r-cran-pillar (1.9.0+dfsg-1) ...
401s Selecting previously unselected package r-cran-tibble.
401s Preparing to unpack .../184-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ...
401s Unpacking r-cran-tibble (3.2.1+dfsg-2) ...
401s Selecting previously unselected package r-cran-withr.
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401s Unpacking r-cran-withr (2.5.0-1) ...
401s Selecting previously unselected package r-cran-tidyselect.
402s Preparing to unpack .../186-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ...
402s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ...
402s Selecting previously unselected package r-cran-dplyr.
402s Preparing to unpack .../187-r-cran-dplyr_1.1.4-1_arm64.deb ...
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402s Selecting previously unselected package r-cran-purrr.
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402s Selecting previously unselected package r-cran-stringi.
402s Preparing to unpack .../189-r-cran-stringi_1.8.3-1_arm64.deb ...
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402s Selecting previously unselected package r-cran-stringr.
402s Preparing to unpack .../190-r-cran-stringr_1.5.1-1_all.deb ...
402s Unpacking r-cran-stringr (1.5.1-1) ...
402s Selecting previously unselected package r-cran-tidyr.
402s Preparing to unpack .../191-r-cran-tidyr_1.3.1-1_arm64.deb ...
402s Unpacking r-cran-tidyr (1.3.1-1) ...
403s Selecting previously unselected package r-cran-dbplyr.
403s Preparing to unpack .../192-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ...
403s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ...
403s Selecting previously unselected package r-cran-filelock.
403s Preparing to unpack .../193-r-cran-filelock_1.0.3-1_arm64.deb ...
403s Unpacking r-cran-filelock (1.0.3-1) ...
403s Selecting previously unselected package r-bioc-biocfilecache.
403s Preparing to unpack .../194-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ...
403s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ...
403s Selecting previously unselected package r-cran-biocmanager.
403s Preparing to unpack .../195-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ...
403s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ...
403s Selecting previously unselected package r-bioc-biocversion.
403s Preparing to unpack .../196-r-bioc-biocversion_3.18.1-1_all.deb ...
403s Unpacking r-bioc-biocversion (3.18.1-1) ...
403s Selecting previously unselected package r-cran-rappdirs.
403s Preparing to unpack .../197-r-cran-rappdirs_0.3.3-1_arm64.deb ...
403s Unpacking r-cran-rappdirs (0.3.3-1) ...
403s Selecting previously unselected package r-cran-yaml.
404s Preparing to unpack .../198-r-cran-yaml_2.3.8-1_arm64.deb ...
404s Unpacking r-cran-yaml (2.3.8-1) ...
404s Selecting previously unselected package r-cran-pkgkitten.
405s Preparing to unpack .../199-r-cran-pkgkitten_0.2.3-1_all.deb ...
405s Unpacking r-cran-pkgkitten (0.2.3-1) ...
405s Selecting previously unselected package r-cran-rcpp.
405s Preparing to unpack .../200-r-cran-rcpp_1.0.12-1_arm64.deb ...
405s Unpacking r-cran-rcpp (1.0.12-1) ...
405s Selecting previously unselected package r-cran-later.
405s Preparing to unpack .../201-r-cran-later_1.3.2+dfsg-1_arm64.deb ...
405s Unpacking r-cran-later (1.3.2+dfsg-1) ...
405s Selecting previously unselected package r-cran-promises.
405s Preparing to unpack .../202-r-cran-promises_1.2.1+dfsg-1_arm64.deb ...
405s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
405s Selecting previously unselected package r-cran-httpuv.
405s Preparing to unpack .../203-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ...
405s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ...
405s Selecting previously unselected package r-cran-base64enc.
409s Preparing to unpack .../204-r-cran-base64enc_0.1-3-3_arm64.deb ...
409s Unpacking r-cran-base64enc (0.1-3-3) ...
409s Selecting previously unselected package r-cran-digest.
412s Preparing to unpack .../205-r-cran-digest_0.6.34-1_arm64.deb ...
412s Unpacking r-cran-digest (0.6.34-1) ...
413s Selecting previously unselected package r-cran-ellipsis.
414s Preparing to unpack .../206-r-cran-ellipsis_0.3.2-2_arm64.deb ...
414s Unpacking r-cran-ellipsis (0.3.2-2) ...
414s Selecting previously unselected package r-cran-htmltools.
414s Preparing to unpack .../207-r-cran-htmltools_0.5.7-1_arm64.deb ...
414s Unpacking r-cran-htmltools (0.5.7-1) ...
414s Selecting previously unselected package r-cran-fontawesome.
414s Preparing to unpack .../208-r-cran-fontawesome_0.5.2-1_all.deb ...
414s Unpacking r-cran-fontawesome (0.5.2-1) ...
414s Selecting previously unselected package r-cran-sourcetools.
414s Preparing to unpack .../209-r-cran-sourcetools_0.1.7-1-1_arm64.deb ...
414s Unpacking r-cran-sourcetools (0.1.7-1-1) ...
414s Selecting previously unselected package r-cran-commonmark.
414s Preparing to unpack .../210-r-cran-commonmark_1.9.1-1_arm64.deb ...
414s Unpacking r-cran-commonmark (1.9.1-1) ...
414s Selecting previously unselected package r-cran-jquerylib.
414s Preparing to unpack .../211-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ...
414s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ...
414s Selecting previously unselected package r-cran-fs.
415s Preparing to unpack .../212-r-cran-fs_1.6.3+dfsg-1_arm64.deb ...
415s Unpacking r-cran-fs (1.6.3+dfsg-1) ...
415s Selecting previously unselected package r-cran-sass.
415s Preparing to unpack .../213-r-cran-sass_0.4.8+dfsg-1_arm64.deb ...
415s Unpacking r-cran-sass (0.4.8+dfsg-1) ...
415s Selecting previously unselected package r-cran-bslib.
415s Preparing to unpack .../214-r-cran-bslib_0.6.1+dfsg-1_all.deb ...
415s Unpacking r-cran-bslib (0.6.1+dfsg-1) ...
415s Selecting previously unselected package libjs-twitter-bootstrap-datepicker.
415s Preparing to unpack .../215-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ...
415s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ...
415s Selecting previously unselected package r-cran-shiny.
415s Preparing to unpack .../216-r-cran-shiny_1.8.0+dfsg-1_all.deb ...
415s Unpacking r-cran-shiny (1.8.0+dfsg-1) ...
415s Selecting previously unselected package r-cran-evaluate.
415s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ...
415s Unpacking r-cran-evaluate (0.23-1) ...
416s Selecting previously unselected package r-cran-xfun.
416s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ...
416s Unpacking r-cran-xfun (0.41+dfsg-1) ...
416s Selecting previously unselected package r-cran-highr.
416s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ...
416s Unpacking r-cran-highr (0.10+dfsg-1) ...
416s Selecting previously unselected package libjs-mathjax.
416s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ...
416s Unpacking libjs-mathjax (2.7.9+dfsg-1) ...
416s Selecting previously unselected package r-cran-knitr.
416s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ...
416s Unpacking r-cran-knitr (1.45+dfsg-1) ...
416s Selecting previously unselected package r-cran-tinytex.
416s Preparing to unpack .../222-r-cran-tinytex_0.49-1_all.deb ...
416s Unpacking r-cran-tinytex (0.49-1) ...
416s Selecting previously unselected package libjs-modernizr.
416s Preparing to unpack .../223-libjs-modernizr_2.6.2+ds1-5_all.deb ...
416s Unpacking libjs-modernizr (2.6.2+ds1-5) ...
417s Selecting previously unselected package r-cran-rmarkdown.
417s Preparing to unpack .../224-r-cran-rmarkdown_2.25+dfsg-3_all.deb ...
417s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ...
417s Selecting previously unselected package r-cran-htmlwidgets.
417s Preparing to unpack .../225-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ...
417s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ...
417s Selecting previously unselected package r-cran-crosstalk.
417s Preparing to unpack .../226-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ...
417s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ...
417s Selecting previously unselected package r-cran-dt.
417s Preparing to unpack .../227-r-cran-dt_0.31+dfsg-1_all.deb ...
417s Unpacking r-cran-dt (0.31+dfsg-1) ...
417s Selecting previously unselected package r-bioc-interactivedisplaybase.
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417s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ...
417s Selecting previously unselected package r-bioc-annotationhub.
417s Preparing to unpack .../229-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ...
417s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ...
417s Selecting previously unselected package r-bioc-biocio.
417s Preparing to unpack .../230-r-bioc-biocio_1.12.0+dfsg-1_all.deb ...
417s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ...
417s Selecting previously unselected package r-cran-formatr.
417s Preparing to unpack .../231-r-cran-formatr_1.14-1_all.deb ...
417s Unpacking r-cran-formatr (1.14-1) ...
417s Selecting previously unselected package r-cran-lambda.r.
418s Preparing to unpack .../232-r-cran-lambda.r_1.2.4-2build1_all.deb ...
418s Unpacking r-cran-lambda.r (1.2.4-2build1) ...
418s Selecting previously unselected package r-cran-futile.options.
418s Preparing to unpack .../233-r-cran-futile.options_1.0.1-3build1_all.deb ...
418s Unpacking r-cran-futile.options (1.0.1-3build1) ...
418s Selecting previously unselected package r-cran-futile.logger.
418s Preparing to unpack .../234-r-cran-futile.logger_1.4.3-4build1_all.deb ...
418s Unpacking r-cran-futile.logger (1.4.3-4build1) ...
418s Selecting previously unselected package r-cran-snow.
418s Preparing to unpack .../235-r-cran-snow_1%3a0.4.4-2_all.deb ...
418s Unpacking r-cran-snow (1:0.4.4-2) ...
418s Selecting previously unselected package r-cran-codetools.
418s Preparing to unpack .../236-r-cran-codetools_0.2-19-1_all.deb ...
418s Unpacking r-cran-codetools (0.2-19-1) ...
418s Selecting previously unselected package r-cran-bh.
418s Preparing to unpack .../237-r-cran-bh_1.84.0-1_all.deb ...
418s Unpacking r-cran-bh (1.84.0-1) ...
418s Selecting previously unselected package r-bioc-biocparallel.
418s Preparing to unpack .../238-r-bioc-biocparallel_1.36.0-1_arm64.deb ...
418s Unpacking r-bioc-biocparallel (1.36.0-1) ...
418s Selecting previously unselected package r-cran-hms.
418s Preparing to unpack .../239-r-cran-hms_1.1.3-1_all.deb ...
418s Unpacking r-cran-hms (1.1.3-1) ...
418s Selecting previously unselected package r-cran-prettyunits.
418s Preparing to unpack .../240-r-cran-prettyunits_1.2.0-1_all.deb ...
418s Unpacking r-cran-prettyunits (1.2.0-1) ...
418s Selecting previously unselected package r-cran-progress.
418s Preparing to unpack .../241-r-cran-progress_1.2.3-1_all.deb ...
418s Unpacking r-cran-progress (1.2.3-1) ...
419s Selecting previously unselected package r-cran-xml2.
419s Preparing to unpack .../242-r-cran-xml2_1.3.6-1_arm64.deb ...
419s Unpacking r-cran-xml2 (1.3.6-1) ...
419s Selecting previously unselected package r-bioc-biomart.
419s Preparing to unpack .../243-r-bioc-biomart_2.58.2+dfsg-1_all.deb ...
419s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ...
419s Selecting previously unselected package r-bioc-rhtslib.
419s Preparing to unpack .../244-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ...
419s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ...
419s Selecting previously unselected package r-bioc-rsamtools.
419s Preparing to unpack .../245-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ...
419s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ...
419s Selecting previously unselected package r-cran-matrixstats.
419s Preparing to unpack .../246-r-cran-matrixstats_1.2.0-1_arm64.deb ...
419s Unpacking r-cran-matrixstats (1.2.0-1) ...
419s Selecting previously unselected package r-bioc-matrixgenerics.
419s Preparing to unpack .../247-r-bioc-matrixgenerics_1.14.0-1_all.deb ...
419s Unpacking r-bioc-matrixgenerics (1.14.0-1) ...
419s Selecting previously unselected package r-cran-lattice.
419s Preparing to unpack .../248-r-cran-lattice_0.22-5-1_arm64.deb ...
419s Unpacking r-cran-lattice (0.22-5-1) ...
419s Selecting previously unselected package r-cran-matrix.
419s Preparing to unpack .../249-r-cran-matrix_1.6-5-1_arm64.deb ...
419s Unpacking r-cran-matrix (1.6-5-1) ...
419s Selecting previously unselected package r-cran-abind.
419s Preparing to unpack .../250-r-cran-abind_1.4-5-2_all.deb ...
419s Unpacking r-cran-abind (1.4-5-2) ...
419s Selecting previously unselected package r-bioc-s4arrays.
419s Preparing to unpack .../251-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ...
419s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ...
419s Selecting previously unselected package r-bioc-sparsearray.
420s Preparing to unpack .../252-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ...
420s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ...
420s Selecting previously unselected package r-bioc-delayedarray.
420s Preparing to unpack .../253-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ...
420s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ...
420s Selecting previously unselected package r-bioc-summarizedexperiment.
420s Preparing to unpack .../254-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ...
420s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
420s Selecting previously unselected package r-bioc-genomicalignments.
420s Preparing to unpack .../255-r-bioc-genomicalignments_1.38.2-1_arm64.deb ...
420s Unpacking r-bioc-genomicalignments (1.38.2-1) ...
420s Selecting previously unselected package r-cran-rjson.
420s Preparing to unpack .../256-r-cran-rjson_0.2.21-1_arm64.deb ...
420s Unpacking r-cran-rjson (0.2.21-1) ...
420s Selecting previously unselected package r-cran-restfulr.
420s Preparing to unpack .../257-r-cran-restfulr_0.0.15-1_arm64.deb ...
420s Unpacking r-cran-restfulr (0.0.15-1) ...
420s Selecting previously unselected package r-bioc-rtracklayer.
420s Preparing to unpack .../258-r-bioc-rtracklayer_1.62.0-1_arm64.deb ...
420s Unpacking r-bioc-rtracklayer (1.62.0-1) ...
420s Selecting previously unselected package r-bioc-bsgenome.
420s Preparing to unpack .../259-r-bioc-bsgenome_1.70.2-1_all.deb ...
420s Unpacking r-bioc-bsgenome (1.70.2-1) ...
420s Selecting previously unselected package r-cran-locfit.
420s Preparing to unpack .../260-r-cran-locfit_1.5-9.8-1_arm64.deb ...
420s Unpacking r-cran-locfit (1.5-9.8-1) ...
420s Selecting previously unselected package r-cran-gtable.
420s Preparing to unpack .../261-r-cran-gtable_0.3.4+dfsg-1_all.deb ...
420s Unpacking r-cran-gtable (0.3.4+dfsg-1) ...
420s Selecting previously unselected package r-cran-isoband.
420s Preparing to unpack .../262-r-cran-isoband_0.2.7-1_arm64.deb ...
420s Unpacking r-cran-isoband (0.2.7-1) ...
420s Selecting previously unselected package r-cran-mass.
420s Preparing to unpack .../263-r-cran-mass_7.3-60.0.1-1_arm64.deb ...
420s Unpacking r-cran-mass (7.3-60.0.1-1) ...
420s Selecting previously unselected package r-cran-nlme.
420s Preparing to unpack .../264-r-cran-nlme_3.1.164-1_arm64.deb ...
420s Unpacking r-cran-nlme (3.1.164-1) ...
420s Selecting previously unselected package r-cran-mgcv.
420s Preparing to unpack .../265-r-cran-mgcv_1.9-1-1_arm64.deb ...
420s Unpacking r-cran-mgcv (1.9-1-1) ...
420s Selecting previously unselected package r-cran-farver.
420s Preparing to unpack .../266-r-cran-farver_2.1.1-1_arm64.deb ...
420s Unpacking r-cran-farver (2.1.1-1) ...
421s Selecting previously unselected package r-cran-labeling.
421s Preparing to unpack .../267-r-cran-labeling_0.4.3-1_all.deb ...
421s Unpacking r-cran-labeling (0.4.3-1) ...
421s Selecting previously unselected package r-cran-colorspace.
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421s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ...
421s Selecting previously unselected package r-cran-munsell.
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421s Unpacking r-cran-munsell (0.5.0-2build1) ...
421s Selecting previously unselected package r-cran-rcolorbrewer.
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421s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ...
421s Selecting previously unselected package r-cran-viridislite.
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421s Unpacking r-cran-viridislite (0.4.2-2) ...
421s Selecting previously unselected package r-cran-scales.
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421s Unpacking r-cran-scales (1.3.0-1) ...
421s Selecting previously unselected package r-cran-ggplot2.
421s Preparing to unpack .../273-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ...
421s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ...
421s Selecting previously unselected package r-cran-rcpparmadillo.
422s Preparing to unpack .../274-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ...
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422s Selecting previously unselected package r-bioc-deseq2.
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422s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ...
422s Selecting previously unselected package r-cran-hwriter.
422s Preparing to unpack .../276-r-cran-hwriter_1.3.2.1-1_all.deb ...
422s Unpacking r-cran-hwriter (1.3.2.1-1) ...
422s Selecting previously unselected package r-cran-statmod.
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422s Selecting previously unselected package r-bioc-geneplotter.
422s Preparing to unpack .../278-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ...
422s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ...
422s Selecting previously unselected package r-cran-survival.
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422s Selecting previously unselected package r-bioc-genefilter.
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422s Unpacking r-bioc-genefilter (1.84.0-1) ...
422s Selecting previously unselected package r-bioc-dexseq.
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422s Selecting previously unselected package r-bioc-limma.
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422s Selecting previously unselected package r-bioc-edger.
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422s Selecting previously unselected package r-bioc-genomicfeatures.
423s Preparing to unpack .../284-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ...
423s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
423s Selecting previously unselected package r-bioc-protgenerics.
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423s Selecting previously unselected package r-bioc-ensembldb.
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423s Selecting previously unselected package r-cran-locfdr.
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423s Selecting previously unselected package r-cran-pbapply.
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423s Selecting previously unselected package r-cran-boot.
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423s Selecting previously unselected package r-bioc-saturn.
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423s Selecting previously unselected package r-bioc-sva.
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423s Selecting previously unselected package r-cran-clipr.
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423s Selecting previously unselected package r-cran-tzdb.
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423s Selecting previously unselected package r-cran-vroom.
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424s Selecting previously unselected package r-cran-readr.
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424s Selecting previously unselected package r-bioc-pfamanalyzer.
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424s Selecting previously unselected package r-cran-plyr.
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424s Selecting previously unselected package r-cran-reshape2.
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424s Selecting previously unselected package r-cran-gridextra.
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425s Selecting previously unselected package r-cran-venndiagram.
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425s Selecting previously unselected package r-bioc-tximport.
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425s Selecting previously unselected package r-bioc-isoformswitchanalyzer.
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425s Setting up libjs-json (0~20221030+~1.0.8-1) ...
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425s Setting up libgraphite2-3:arm64 (1.3.14-2) ...
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429s Setting up r-base-core (4.3.2-1build1) ...
429s 
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429s Setting up r-cran-locfdr (1.1-8-2) ...
429s Setting up r-cran-labeling (0.4.3-1) ...
429s Setting up r-cran-sourcetools (0.1.7-1-1) ...
429s Setting up r-cran-futile.options (1.0.1-3build1) ...
429s Setting up r-cran-lattice (0.22-5-1) ...
429s Setting up r-cran-nlme (3.1.164-1) ...
429s Setting up r-cran-farver (2.1.1-1) ...
429s Setting up r-cran-formatr (1.14-1) ...
429s Setting up r-cran-pbapply (1.7-2-1) ...
429s Setting up r-cran-xml (3.99-0.16.1-1) ...
429s Setting up r-cran-viridislite (0.4.2-2) ...
429s Setting up r-cran-locfit (1.5-9.8-1) ...
429s Setting up r-cran-statmod (1.5.0-1) ...
429s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
429s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
429s Setting up r-cran-lazyeval (0.2.2-1build1) ...
429s Setting up r-cran-clipr (0.8.0-1) ...
429s Setting up r-cran-commonmark (1.9.1-1) ...
429s Setting up r-cran-r6 (2.5.1-1) ...
429s Setting up r-cran-pkgkitten (0.2.3-1) ...
429s Setting up r-cran-magrittr (2.0.3-1) ...
429s Setting up r-cran-rappdirs (0.3.3-1) ...
429s Setting up r-cran-filelock (1.0.3-1) ...
429s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ...
429s Setting up r-cran-littler (0.3.19-1) ...
429s Setting up r-cran-bh (1.84.0-1) ...
429s Setting up r-cran-fs (1.6.3+dfsg-1) ...
429s Setting up r-cran-rcpp (1.0.12-1) ...
429s Setting up r-cran-curl (5.2.0+dfsg-1) ...
429s Setting up r-cran-codetools (0.2-19-1) ...
429s Setting up r-cran-boot (1.3-30-1) ...
429s Setting up r-bioc-biocgenerics (0.48.1-2) ...
429s Setting up r-cran-rlang (1.1.3-1) ...
429s Setting up r-cran-matrixstats (1.2.0-1) ...
429s Setting up littler (0.3.19-1) ...
429s Setting up r-bioc-matrixgenerics (1.14.0-1) ...
429s Setting up r-cran-xfun (0.41+dfsg-1) ...
429s Setting up r-cran-sys (3.4.2-1) ...
429s Setting up r-cran-plogr (0.2.0-3build1) ...
429s Setting up r-cran-withr (2.5.0-1) ...
429s Setting up r-cran-mime (0.12-1) ...
429s Setting up r-cran-generics (0.1.3-1) ...
429s Setting up r-cran-base64enc (0.1-3-3) ...
429s Setting up r-cran-abind (1.4-5-2) ...
429s Setting up r-cran-digest (0.6.34-1) ...
429s Setting up r-cran-yaml (2.3.8-1) ...
429s Setting up r-cran-lambda.r (1.2.4-2build1) ...
429s Setting up r-bioc-protgenerics (1.34.0-1) ...
429s Setting up r-cran-evaluate (0.23-1) ...
429s Setting up r-cran-dbi (1.2.2-1) ...
429s Setting up r-cran-highr (0.10+dfsg-1) ...
429s Setting up r-cran-prettyunits (1.2.0-1) ...
429s Setting up r-cran-fansi (1.0.5-1) ...
429s Setting up r-cran-mass (7.3-60.0.1-1) ...
429s Setting up r-cran-snow (1:0.4.4-2) ...
429s Setting up r-cran-glue (1.7.0-1) ...
429s Setting up r-cran-bit (4.0.5-1) ...
429s Setting up r-cran-xtable (1:1.8-4-2) ...
429s Setting up r-cran-cli (3.6.2-1) ...
429s Setting up gfortran (4:13.2.0-7ubuntu1) ...
429s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
429s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
429s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
429s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
429s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
429s Setting up r-cran-bitops (1.0-7-1) ...
429s Setting up r-bioc-biocversion (3.18.1-1) ...
429s Setting up r-cran-bit64 (4.0.5-1) ...
429s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ...
429s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
429s Setting up r-cran-askpass (1.2.0-1) ...
429s Setting up r-cran-fastmap (1.1.1-1) ...
429s Setting up r-cran-png (0.1-8-1) ...
429s Setting up r-bioc-biobase (2.62.0-1) ...
429s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
429s Setting up r-cran-pkgconfig (2.0.3-2build1) ...
429s Setting up r-cran-utf8 (1.2.4-1) ...
429s Setting up r-cran-colorspace (2.1-0+dfsg-1) ...
429s Setting up r-cran-stringi (1.8.3-1) ...
429s Setting up r-cran-hwriter (1.3.2.1-1) ...
429s Setting up r-cran-cpp11 (0.4.7-1) ...
429s Setting up r-cran-plyr (1.8.9-1) ...
429s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ...
429s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
429s Setting up r-cran-isoband (0.2.7-1) ...
429s Setting up r-cran-futile.logger (1.4.3-4build1) ...
429s Setting up r-bioc-limma (3.58.1+dfsg-1) ...
429s Setting up r-cran-gtable (0.3.4+dfsg-1) ...
429s Setting up r-cran-later (1.3.2+dfsg-1) ...
429s Setting up r-cran-matrix (1.6-5-1) ...
429s Setting up r-cran-tinytex (0.49-1) ...
429s Setting up r-bioc-tximport (1.30.0+dfsg-1) ...
429s Setting up r-cran-knitr (1.45+dfsg-1) ...
429s Setting up r-cran-mgcv (1.9-1-1) ...
429s Setting up g++ (4:13.2.0-7ubuntu1) ...
429s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
429s Setting up r-cran-cachem (1.0.8-1) ...
429s Setting up build-essential (12.10ubuntu1) ...
429s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ...
429s Setting up r-bioc-iranges (2.36.0-1) ...
429s Setting up r-cran-rjson (0.2.21-1) ...
429s Setting up r-cran-tzdb (0.4.0-2) ...
429s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ...
429s Setting up r-cran-restfulr (0.0.15-1) ...
429s Setting up r-cran-vctrs (0.6.5-1) ...
429s Setting up r-cran-pillar (1.9.0+dfsg-1) ...
429s Setting up r-cran-ellipsis (0.3.2-2) ...
429s Setting up r-cran-openssl (2.1.1+dfsg-2) ...
429s Setting up r-base-dev (4.3.2-1build1) ...
429s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
429s Setting up r-cran-stringr (1.5.1-1) ...
429s Setting up r-bioc-biocparallel (1.36.0-1) ...
429s Setting up r-bioc-edger (4.0.16+dfsg-1) ...
429s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ...
429s Setting up r-cran-venndiagram (1.7.3-1) ...
429s Setting up r-cran-xml2 (1.3.6-1) ...
429s Setting up r-cran-munsell (0.5.0-2build1) ...
429s Setting up r-cran-tibble (3.2.1+dfsg-2) ...
429s Setting up r-cran-survival (3.5-8-1) ...
429s Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
429s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
429s Setting up r-cran-reshape2 (1.4.4-2build1) ...
429s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ...
429s Setting up r-cran-httr (1.4.7+dfsg-1) ...
429s Setting up r-cran-gridextra (2.3-3build1) ...
429s Setting up r-cran-hms (1.1.3-1) ...
429s Setting up r-cran-scales (1.3.0-1) ...
429s Setting up r-cran-memoise (2.0.1-1) ...
429s Setting up r-cran-promises (1.2.1+dfsg-1) ...
429s Setting up r-cran-purrr (1.0.2-1) ...
429s Setting up r-cran-blob (1.2.4-1) ...
429s Setting up r-cran-htmltools (0.5.7-1) ...
429s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
429s Setting up r-bioc-xvector (0.42.0-1) ...
429s Setting up r-cran-sass (0.4.8+dfsg-1) ...
429s Setting up r-cran-dplyr (1.1.4-1) ...
429s Setting up r-cran-rsqlite (2.3.4-1) ...
429s Setting up r-cran-progress (1.2.3-1) ...
429s Setting up r-cran-vroom (1.6.5-1) ...
429s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ...
429s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ...
429s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
429s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
429s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ...
429s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ...
429s Setting up r-cran-fontawesome (0.5.2-1) ...
429s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
429s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
429s Setting up r-cran-readr (2.1.5-1) ...
429s Setting up r-cran-tidyr (1.3.1-1) ...
429s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
429s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
429s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
429s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
429s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
429s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
429s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ...
429s Setting up r-bioc-annotationdbi (1.64.1-1) ...
429s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
429s Setting up r-bioc-pfamanalyzer (1.2.0+dfsg-1) ...
429s Setting up r-bioc-annotate (1.80.0+dfsg-1) ...
429s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
429s Setting up r-bioc-biomart (2.58.2+dfsg-1) ...
429s Setting up r-bioc-saturn (1.10.0+dfsg-1) ...
429s Setting up r-bioc-genefilter (1.84.0-1) ...
429s Setting up r-bioc-genomicalignments (1.38.2-1) ...
429s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ...
429s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ...
429s Setting up r-bioc-rtracklayer (1.62.0-1) ...
429s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
429s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ...
429s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
429s Setting up r-bioc-sva (3.50.0-1) ...
429s Setting up r-bioc-bsgenome (1.70.2-1) ...
429s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ...
429s Setting up r-cran-dt (0.31+dfsg-1) ...
429s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ...
429s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ...
429s Setting up r-bioc-tximeta (1.20.3+dfsg-1) ...
429s Setting up r-bioc-isoformswitchanalyzer (2.2.0+ds-1) ...
429s Setting up autopkgtest-satdep (0) ...
429s Processing triggers for man-db (2.12.0-3) ...
431s Processing triggers for install-info (7.1-3) ...
431s Processing triggers for libc-bin (2.39-0ubuntu2) ...
449s (Reading database ... 118438 files and directories currently installed.)
449s Removing autopkgtest-satdep (0) ...
450s autopkgtest [17:43:24]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
450s autopkgtest [17:43:24]: test pkg-r-autopkgtest: [-----------------------
450s Test: Try to load the R library IsoformSwitchAnalyzeR
451s 
451s R version 4.3.2 (2023-10-31) -- "Eye Holes"
451s Copyright (C) 2023 The R Foundation for Statistical Computing
451s Platform: aarch64-unknown-linux-gnu (64-bit)
451s 
451s R is free software and comes with ABSOLUTELY NO WARRANTY.
451s You are welcome to redistribute it under certain conditions.
451s Type 'license()' or 'licence()' for distribution details.
451s 
451s R is a collaborative project with many contributors.
451s Type 'contributors()' for more information and
451s 'citation()' on how to cite R or R packages in publications.
451s 
451s Type 'demo()' for some demos, 'help()' for on-line help, or
451s 'help.start()' for an HTML browser interface to help.
451s Type 'q()' to quit R.
451s 
452s > library('IsoformSwitchAnalyzeR')
452s Loading required package: limma
452s Loading required package: DEXSeq
452s Loading required package: BiocParallel
452s Loading required package: Biobase
452s Loading required package: BiocGenerics
452s 
452s Attaching package: ‘BiocGenerics’
452s 
452s The following object is masked from ‘package:limma’:
452s 
452s     plotMA
452s 
452s The following objects are masked from ‘package:stats’:
452s 
452s     IQR, mad, sd, var, xtabs
452s 
452s The following objects are masked from ‘package:base’:
452s 
452s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
452s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
452s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
452s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
452s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
452s     table, tapply, union, unique, unsplit, which.max, which.min
452s 
452s Welcome to Bioconductor
452s 
452s     Vignettes contain introductory material; view with
452s     'browseVignettes()'. To cite Bioconductor, see
452s     'citation("Biobase")', and for packages 'citation("pkgname")'.
452s 
452s Loading required package: SummarizedExperiment
452s Loading required package: MatrixGenerics
452s Loading required package: matrixStats
452s 
452s Attaching package: ‘matrixStats’
452s 
452s The following objects are masked from ‘package:Biobase’:
452s 
452s     anyMissing, rowMedians
452s 
453s 
453s Attaching package: ‘MatrixGenerics’
453s 
453s The following objects are masked from ‘package:matrixStats’:
453s 
453s     colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
453s     colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
453s     colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
453s     colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
453s     colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
453s     colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
453s     colWeightedMeans, colWeightedMedians, colWeightedSds,
453s     colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
453s     rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
453s     rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
453s     rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
453s     rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
453s     rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
453s     rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
453s     rowWeightedSds, rowWeightedVars
453s 
453s The following object is masked from ‘package:Biobase’:
453s 
453s     rowMedians
453s 
453s Loading required package: GenomicRanges
453s Loading required package: stats4
453s Loading required package: S4Vectors
453s 
453s Attaching package: ‘S4Vectors’
453s 
453s The following object is masked from ‘package:utils’:
453s 
453s     findMatches
453s 
453s The following objects are masked from ‘package:base’:
453s 
453s     expand.grid, I, unname
453s 
453s Loading required package: IRanges
454s Loading required package: GenomeInfoDb
458s Loading required package: DESeq2
459s Loading required package: AnnotationDbi
460s Loading required package: RColorBrewer
462s Loading required package: satuRn
462s Loading required package: sva
462s Loading required package: mgcv
462s Loading required package: nlme
462s 
462s Attaching package: ‘nlme’
462s 
462s The following object is masked from ‘package:IRanges’:
462s 
462s     collapse
462s 
462s This is mgcv 1.9-1. For overview type 'help("mgcv-package")'.
462s Loading required package: genefilter
462s 
462s Attaching package: ‘genefilter’
462s 
462s The following objects are masked from ‘package:MatrixGenerics’:
462s 
462s     rowSds, rowVars
462s 
462s The following objects are masked from ‘package:matrixStats’:
462s 
462s     rowSds, rowVars
462s 
462s Loading required package: ggplot2
462s Loading required package: pfamAnalyzeR
462s Loading required package: readr
462s 
462s Attaching package: ‘readr’
462s 
462s The following object is masked from ‘package:genefilter’:
462s 
462s     spec
462s 
462s Loading required package: stringr
463s Loading required package: dplyr
463s 
463s Attaching package: ‘dplyr’
463s 
463s The following object is masked from ‘package:nlme’:
463s 
463s     collapse
463s 
463s The following object is masked from ‘package:AnnotationDbi’:
463s 
463s     select
463s 
463s The following objects are masked from ‘package:GenomicRanges’:
463s 
463s     intersect, setdiff, union
463s 
463s The following object is masked from ‘package:GenomeInfoDb’:
463s 
463s     intersect
463s 
463s The following objects are masked from ‘package:IRanges’:
463s 
463s     collapse, desc, intersect, setdiff, slice, union
463s 
463s The following objects are masked from ‘package:S4Vectors’:
463s 
463s     first, intersect, rename, setdiff, setequal, union
463s 
463s The following object is masked from ‘package:matrixStats’:
463s 
463s     count
463s 
463s The following object is masked from ‘package:Biobase’:
463s 
463s     combine
463s 
463s The following objects are masked from ‘package:BiocGenerics’:
463s 
463s     combine, intersect, setdiff, union
463s 
463s The following objects are masked from ‘package:stats’:
463s 
463s     filter, lag
463s 
463s The following objects are masked from ‘package:base’:
463s 
463s     intersect, setdiff, setequal, union
463s 
468s > 
468s > 
468s Other tests are currently unsupported!
468s They will be progressively added.
470s autopkgtest [17:43:44]: test pkg-r-autopkgtest: -----------------------]
471s autopkgtest [17:43:45]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
471s pkg-r-autopkgtest    PASS
471s autopkgtest [17:43:45]: @@@@@@@@@@@@@@@@@@@@ summary
471s pkg-r-autopkgtest    PASS
482s Creating nova instance adt-noble-arm64-r-bioc-isoformswitchanalyzer-20240316-173554-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...