0s autopkgtest [13:54:31]: starting date and time: 2024-03-16 13:54:31+0000 0s autopkgtest [13:54:31]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:54:31]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kk74q0kd/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-cran-rcurl,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-isoformswitchanalyzer --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-cran-rcurl/1.98-1.14+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-4.secgroup --name adt-noble-arm64-r-bioc-isoformswitchanalyzer-20240316-135430-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [13:56:21]: testbed dpkg architecture: arm64 110s autopkgtest [13:56:21]: testbed apt version: 2.7.12 110s autopkgtest [13:56:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 114s Fetched 9092 kB in 2s (4690 kB/s) 114s Reading package lists... 117s Reading package lists... 117s Building dependency tree... 117s Reading state information... 118s Calculating upgrade... 118s The following packages will be REMOVED: 118s libssl3 118s The following NEW packages will be installed: 118s libssl3t64 118s The following packages have been kept back: 118s curl 118s The following packages will be upgraded: 118s openssl ubuntu-minimal ubuntu-standard 118s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 118s Need to get 2775 kB of archives. 118s After this operation, 72.7 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 119s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 119s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 119s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 120s Fetched 2775 kB in 1s (3992 kB/s) 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 120s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 120s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 120s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 120s wget depends on libssl3 (>= 3.0.0). 120s u-boot-tools depends on libssl3 (>= 3.0.0). 120s tnftp depends on libssl3 (>= 3.0.0). 120s tcpdump depends on libssl3 (>= 3.0.0). 120s systemd-resolved depends on libssl3 (>= 3.0.0). 120s systemd depends on libssl3 (>= 3.0.0). 120s sudo depends on libssl3 (>= 3.0.0). 120s sbsigntool depends on libssl3 (>= 3.0.0). 120s rsync depends on libssl3 (>= 3.0.0). 120s python3-cryptography depends on libssl3 (>= 3.0.0). 120s openssh-server depends on libssl3 (>= 3.0.10). 120s openssh-client depends on libssl3 (>= 3.0.10). 120s mtd-utils depends on libssl3 (>= 3.0.0). 120s mokutil depends on libssl3 (>= 3.0.0). 120s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 120s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 120s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 120s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 120s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 120s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 120s libnvme1 depends on libssl3 (>= 3.0.0). 120s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 120s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 120s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 120s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 120s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 120s kmod depends on libssl3 (>= 3.0.0). 120s dhcpcd-base depends on libssl3 (>= 3.0.0). 120s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 120s 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 120s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 120s Selecting previously unselected package libssl3t64:arm64. 120s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 120s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 120s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 120s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 120s Unpacking ubuntu-minimal (1.536) over (1.535) ... 120s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 120s Unpacking ubuntu-standard (1.536) over (1.535) ... 120s Setting up ubuntu-minimal (1.536) ... 120s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 120s Setting up ubuntu-standard (1.536) ... 120s Setting up openssl (3.0.13-0ubuntu1) ... 120s Processing triggers for man-db (2.12.0-3) ... 121s Processing triggers for libc-bin (2.39-0ubuntu2) ... 122s Reading package lists... 122s Building dependency tree... 122s Reading state information... 123s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 123s sh: Attempting to set up Debian/Ubuntu apt sources automatically 123s sh: Distribution appears to be Ubuntu 124s Reading package lists... 125s Building dependency tree... 125s Reading state information... 125s eatmydata is already the newest version (131-1). 125s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 126s dbus is already the newest version (1.14.10-4ubuntu1). 126s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 126s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s rng-tools-debian is already the newest version (2.4). 127s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s The following packages will be REMOVED: 128s cloud-init* python3-configobj* python3-debconf* 128s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 128s After this operation, 3252 kB disk space will be freed. 128s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 128s Removing cloud-init (24.1.1-0ubuntu1) ... 129s Removing python3-configobj (5.0.8-3) ... 129s Removing python3-debconf (1.5.86) ... 129s Processing triggers for man-db (2.12.0-3) ... 130s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 130s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 131s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 131s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 131s invoke-rc.d: policy-rc.d denied execution of try-restart. 131s Reading package lists... 131s Building dependency tree... 131s Reading state information... 132s linux-generic is already the newest version (6.8.0-11.11+1). 132s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 132s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 132s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 132s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 136s Reading package lists... 136s Reading package lists... 136s Building dependency tree... 136s Reading state information... 137s Calculating upgrade... 137s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Reading package lists... 138s Building dependency tree... 138s Reading state information... 138s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 139s autopkgtest [13:56:50]: rebooting testbed after setup commands that affected boot 176s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 190s autopkgtest [13:57:41]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 193s autopkgtest [13:57:44]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-isoformswitchanalyzer 197s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (dsc) [2863 B] 197s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (tar) [3120 kB] 197s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-isoformswitchanalyzer 2.2.0+ds-1 (diff) [3032 B] 197s gpgv: Signature made Fri Dec 8 14:54:19 2023 UTC 197s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 197s gpgv: issuer "tille@debian.org" 197s gpgv: Can't check signature: No public key 197s dpkg-source: warning: cannot verify inline signature for ./r-bioc-isoformswitchanalyzer_2.2.0+ds-1.dsc: no acceptable signature found 198s autopkgtest [13:57:49]: testing package r-bioc-isoformswitchanalyzer version 2.2.0+ds-1 198s autopkgtest [13:57:49]: build not needed 200s autopkgtest [13:57:51]: test pkg-r-autopkgtest: preparing testbed 202s Reading package lists... 202s Building dependency tree... 202s Reading state information... 203s Starting pkgProblemResolver with broken count: 0 203s Starting 2 pkgProblemResolver with broken count: 0 203s Done 203s The following additional packages will be installed: 203s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 203s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 203s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 203s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 203s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 203s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 203s javascript-common libasan8 libatomic1 libblas-dev libblas3 libboost-dev 203s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 203s libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 203s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 203s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 203s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 203s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 203s libjs-jquery-datatables libjs-jquery-datatables-extensions 203s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 203s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 203s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 203s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 203s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 203s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 203s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 203s libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 203s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 203s libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass 203s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 203s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 203s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 203s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 203s r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 203s r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 203s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 203s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 203s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 203s r-bioc-isoformswitchanalyzer r-bioc-keggrest r-bioc-limma 203s r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib 203s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 203s r-bioc-saturn r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva 203s r-bioc-tximeta r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind 203s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 203s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-bslib 203s r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace 203s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 203s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 203s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 203s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 203s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 203s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 203s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter 203s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 203s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 203s r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass 203s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 203s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 203s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png 203s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 203s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 203s r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson 203s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales 203s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 203s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 203s r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs 203s r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun 203s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 203s x11-common xdg-utils zip zlib1g-dev 203s Suggested packages: 203s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 203s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 203s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 203s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 203s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 203s libboost-context1.83-dev libboost-contract1.83-dev 203s libboost-coroutine1.83-dev libboost-date-time1.83-dev 203s libboost-exception1.83-dev libboost-fiber1.83-dev 203s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 203s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 203s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 203s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 203s libboost-numpy1.83-dev libboost-program-options1.83-dev 203s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 203s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 203s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 203s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 203s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 203s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 203s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 203s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 203s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 203s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 203s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base 203s texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra 203s texlive-extra-utils texinfo r-bioc-go.db r-bioc-org.hs.eg.db r-cran-runit 203s r-bioc-graph r-bioc-biocstyle r-cran-testthat r-bioc-variantannotation 203s r-bioc-experimenthub r-bioc-all r-bioc-affy r-cran-foreach r-cran-bbmisc 203s r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-data.table 203s r-cran-mockery r-cran-webmockr r-bioc-hdf5array r-cran-lobstr 203s r-bioc-delayedmatrixstats r-cran-pheatmap r-bioc-tximportdata 203s r-bioc-glmgampoi r-cran-roxygen2 r-bioc-rhdf5 r-cran-seuratobject 203s r-bioc-ggbio r-bioc-gviz r-cran-class r-cran-r.utils r-cran-markdown 203s r-cran-biasedurn r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats 203s r-cran-covr r-bioc-bladderbatch r-bioc-fishpond r-cran-devtools r-cran-ff 203s r-cran-rstudioapi r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd 203s r-cran-shinyjs r-cran-jpeg r-cran-viridis r-cran-rmysql r-cran-lubridate 203s r-cran-magick r-cran-sf r-cran-getopt r-cran-interp r-cran-gam 203s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 203s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-spelling 203s r-cran-bench r-cran-brio r-cran-callr r-cran-here r-cran-pkgbuild 203s r-cran-pkgload r-cran-plm r-cran-zoo 203s Recommended packages: 203s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 203s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-thematic 203s r-cran-callr r-cran-covr r-cran-mockery r-cran-processx r-cran-ps 203s r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench r-cran-brio 203s r-cran-decor r-cran-desc r-cran-lobstr r-cran-spelling r-cran-webutils 203s r-cran-rpostgresql r-cran-broom r-cran-rmysql r-cran-future r-cran-testit 203s w3m | www-browser r-cran-unitizer r-cran-rsvg r-cran-pkgload r-cran-hexbin 203s r-cran-hmisc r-cran-mapproj r-cran-maps r-cran-multcomp r-cran-profvis 203s r-cran-quantreg r-cran-ragg r-cran-rpart r-cran-sf r-cran-svglite 203s r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-markdown r-cran-jpeg 203s r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 203s r-cran-tikzdevice r-cran-webshot node-highlight.js r-cran-lintr 203s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-future.apply 203s r-cran-lubridate r-cran-doparallel r-cran-foreach r-cran-iterators 203s r-cran-itertools r-cran-runit r-cran-usethis r-cran-dygraphs 203s r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert r-cran-gh 203s r-cran-rvest r-cran-dichromat r-cran-data.table r-cran-mockr 203s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 203s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 203s x11-xserver-utils 204s The following NEW packages will be installed: 204s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 204s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 204s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 204s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 204s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 204s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 204s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 204s libatomic1 libblas-dev libblas3 libboost-dev libboost1.83-dev libbz2-dev 204s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 204s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 204s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 204s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 204s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 204s libjs-highlight.js libjs-jquery libjs-jquery-datatables 204s libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui 204s libjs-json libjs-mathjax libjs-microplugin.js libjs-modernizr 204s libjs-popper.js libjs-prettify libjs-sifter.js 204s libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 liblerc4 204s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 204s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 204s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 204s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 204s libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 204s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 204s libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass 204s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 204s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-annotate 204s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-annotationhub 204s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 204s r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 204s r-bioc-bsgenome r-bioc-delayedarray r-bioc-deseq2 r-bioc-dexseq r-bioc-edger 204s r-bioc-ensembldb r-bioc-genefilter r-bioc-geneplotter r-bioc-genomeinfodb 204s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 204s r-bioc-genomicranges r-bioc-interactivedisplaybase r-bioc-iranges 204s r-bioc-isoformswitchanalyzer r-bioc-keggrest r-bioc-limma 204s r-bioc-matrixgenerics r-bioc-pfamanalyzer r-bioc-protgenerics r-bioc-rhtslib 204s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 204s r-bioc-saturn r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-sva 204s r-bioc-tximeta r-bioc-tximport r-bioc-xvector r-bioc-zlibbioc r-cran-abind 204s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 204s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-boot r-cran-bslib 204s r-cran-cachem r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace 204s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 204s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 204s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver r-cran-fastmap 204s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 204s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-ggplot2 204s r-cran-glue r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hms 204s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-hwriter 204s r-cran-isoband r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 204s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 204s r-cran-littler r-cran-locfdr r-cran-locfit r-cran-magrittr r-cran-mass 204s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 204s r-cran-munsell r-cran-nlme r-cran-openssl r-cran-pbapply r-cran-pillar 204s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr r-cran-png 204s r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 204s r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcpparmadillo 204s r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson 204s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass r-cran-scales 204s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 204s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 204s r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs 204s r-cran-venndiagram r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xfun 204s r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 204s x11-common xdg-utils zip zlib1g-dev 204s 0 upgraded, 305 newly installed, 0 to remove and 0 not upgraded. 204s Need to get 354 MB/354 MB of archives. 204s After this operation, 1149 MB of additional disk space will be used. 204s Get:1 /tmp/autopkgtest.Oqv3lb/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 204s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 204s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 204s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 204s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 204s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 204s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 204s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 204s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 204s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 204s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 205s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 205s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 205s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 205s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 205s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 205s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 205s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 205s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 205s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 205s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 205s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 205s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 205s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 205s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 206s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 206s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 206s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 206s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 206s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 206s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 206s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 206s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 206s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 206s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 206s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 206s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 206s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 206s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 206s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 206s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 206s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 206s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 206s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 206s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 206s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 206s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 206s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 206s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 206s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 206s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 206s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 206s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 206s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 207s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 207s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 207s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 207s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 207s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 207s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 207s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 207s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 207s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 207s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 207s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 207s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 207s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 207s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 207s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 207s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 207s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 207s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 207s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 207s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 207s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 207s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 207s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 207s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 207s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 207s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 207s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 207s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 207s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 207s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 207s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 207s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 207s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 207s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 207s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 207s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 208s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 208s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 208s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 208s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 208s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 208s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 208s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 208s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 208s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 208s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 208s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 208s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 208s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 208s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 208s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 208s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 208s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 208s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 208s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 208s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 208s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 208s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 208s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 208s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 208s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 208s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 208s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 208s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 208s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 208s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 208s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 208s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 209s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 209s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 209s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 209s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 209s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 209s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 209s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 210s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 210s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 210s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 210s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 210s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 210s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 210s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 210s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 210s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 210s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 211s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 211s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 211s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 211s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 211s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 211s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 211s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 211s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 211s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 211s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 211s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 211s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 211s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 211s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 211s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 211s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 211s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 211s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 211s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 211s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 211s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 211s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 211s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 211s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 211s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 211s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 211s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 211s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 211s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 211s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 212s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 212s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 212s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 212s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 212s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 212s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 213s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 213s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 213s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 213s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 213s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 213s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 213s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 213s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 213s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 213s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 213s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 213s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 213s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 213s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 213s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 213s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 213s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 213s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 213s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 213s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 213s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 213s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 213s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 213s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 213s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 213s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 213s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 213s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 213s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 214s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 214s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 214s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 214s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 214s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 214s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 214s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 214s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 214s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 214s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 214s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 214s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 214s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 214s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 214s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 214s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 214s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 214s Get:222 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 214s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 214s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 214s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 214s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 215s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 215s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 215s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 215s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 215s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 215s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 215s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 215s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 215s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 215s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 215s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 215s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 215s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 215s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 215s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 215s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 215s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 215s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 215s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 215s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 215s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 215s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 215s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 215s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 215s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 215s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 215s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 215s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 215s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 215s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 215s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 215s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 215s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 215s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 216s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 216s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 216s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 216s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 216s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 216s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 216s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 216s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 216s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 216s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 216s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 216s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 216s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 216s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 216s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 216s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpparmadillo arm64 0.12.8.0.0-1 [859 kB] 216s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-deseq2 arm64 1.42.0+dfsg-1 [1218 kB] 216s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hwriter all 1.3.2.1-1 [106 kB] 216s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 216s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geneplotter all 1.80.0+dfsg-1 [1416 kB] 217s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 217s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 217s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-dexseq all 1.48.0+dfsg-1 [464 kB] 217s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 217s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 217s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 217s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 217s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 217s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfdr all 1.1-8-2 [306 kB] 217s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pbapply all 1.7-2-1 [102 kB] 217s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-boot all 1.3-30-1 [619 kB] 217s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-saturn all 1.10.0+dfsg-1 [2954 kB] 217s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sva arm64 3.50.0-1 [465 kB] 217s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 217s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 217s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 218s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 218s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-pfamanalyzer all 1.2.0+dfsg-1 [32.4 kB] 218s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 218s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 218s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 218s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-venndiagram all 1.7.3-1 [266 kB] 218s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximport all 1.30.0+dfsg-1 [89.5 kB] 218s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-tximeta all 1.20.3+dfsg-1 [502 kB] 218s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-isoformswitchanalyzer arm64 2.2.0+ds-1 [4106 kB] 221s Preconfiguring packages ... 221s Fetched 354 MB in 15s (23.1 MB/s) 221s Selecting previously unselected package libc-dev-bin. 221s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 221s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 221s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 221s Selecting previously unselected package linux-libc-dev:arm64. 222s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 222s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 222s Selecting previously unselected package libcrypt-dev:arm64. 222s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 222s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 222s Selecting previously unselected package libtirpc-dev:arm64. 222s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 222s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 222s Selecting previously unselected package libnsl-dev:arm64. 222s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 222s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 222s Selecting previously unselected package rpcsvc-proto. 222s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 222s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 222s Selecting previously unselected package libc6-dev:arm64. 222s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 222s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 223s Selecting previously unselected package libisl23:arm64. 223s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 223s Unpacking libisl23:arm64 (0.26-3) ... 223s Selecting previously unselected package libmpc3:arm64. 223s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 223s Unpacking libmpc3:arm64 (1.3.1-1) ... 223s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 223s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 223s Selecting previously unselected package cpp-13. 223s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 223s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 224s Selecting previously unselected package cpp-aarch64-linux-gnu. 224s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 224s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package cpp. 224s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 224s Unpacking cpp (4:13.2.0-7ubuntu1) ... 224s Selecting previously unselected package libcc1-0:arm64. 224s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libgomp1:arm64. 224s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libitm1:arm64. 224s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libatomic1:arm64. 224s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libasan8:arm64. 224s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package liblsan0:arm64. 224s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 224s Selecting previously unselected package libtsan2:arm64. 224s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 224s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libubsan1:arm64. 225s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libhwasan0:arm64. 225s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 225s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 225s Selecting previously unselected package libgcc-13-dev:arm64. 225s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 225s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 225s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 225s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gcc-13. 226s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 226s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 226s Selecting previously unselected package gcc-aarch64-linux-gnu. 226s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 226s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package gcc. 226s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 226s Unpacking gcc (4:13.2.0-7ubuntu1) ... 226s Selecting previously unselected package libstdc++-13-dev:arm64. 226s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 226s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 227s Selecting previously unselected package g++-13-aarch64-linux-gnu. 227s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 227s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 227s Selecting previously unselected package g++-13. 227s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 227s Unpacking g++-13 (13.2.0-17ubuntu2) ... 227s Selecting previously unselected package g++-aarch64-linux-gnu. 227s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 227s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 227s Selecting previously unselected package g++. 227s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 227s Unpacking g++ (4:13.2.0-7ubuntu1) ... 227s Selecting previously unselected package build-essential. 228s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 228s Unpacking build-essential (12.10ubuntu1) ... 228s Selecting previously unselected package dctrl-tools. 228s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 228s Unpacking dctrl-tools (2.24-3build2) ... 228s Selecting previously unselected package fonts-dejavu-mono. 228s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 228s Unpacking fonts-dejavu-mono (2.37-8) ... 228s Selecting previously unselected package fonts-dejavu-core. 228s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 228s Unpacking fonts-dejavu-core (2.37-8) ... 228s Selecting previously unselected package fontconfig-config. 228s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 228s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 228s Selecting previously unselected package libfontconfig1:arm64. 228s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 228s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 228s Selecting previously unselected package fontconfig. 229s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 229s Unpacking fontconfig (2.15.0-1ubuntu1) ... 229s Selecting previously unselected package fonts-font-awesome. 229s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 229s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 229s Selecting previously unselected package fonts-glyphicons-halflings. 229s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 229s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 229s Selecting previously unselected package fonts-mathjax. 229s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 229s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 229s Selecting previously unselected package libgfortran5:arm64. 229s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 229s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 229s Selecting previously unselected package libgfortran-13-dev:arm64. 229s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 229s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 229s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 229s Preparing to unpack .../044-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 229s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gfortran-13. 230s Preparing to unpack .../045-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 230s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 230s Selecting previously unselected package gfortran-aarch64-linux-gnu. 230s Preparing to unpack .../046-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 230s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 230s Selecting previously unselected package gfortran. 231s Preparing to unpack .../047-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 231s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 231s Selecting previously unselected package icu-devtools. 231s Preparing to unpack .../048-icu-devtools_74.2-1ubuntu1_arm64.deb ... 231s Unpacking icu-devtools (74.2-1ubuntu1) ... 231s Selecting previously unselected package javascript-common. 231s Preparing to unpack .../049-javascript-common_11+nmu1_all.deb ... 231s Unpacking javascript-common (11+nmu1) ... 231s Selecting previously unselected package libblas3:arm64. 232s Preparing to unpack .../050-libblas3_3.12.0-3_arm64.deb ... 232s Unpacking libblas3:arm64 (3.12.0-3) ... 232s Selecting previously unselected package libblas-dev:arm64. 232s Preparing to unpack .../051-libblas-dev_3.12.0-3_arm64.deb ... 232s Unpacking libblas-dev:arm64 (3.12.0-3) ... 232s Selecting previously unselected package libboost1.83-dev:arm64. 232s Preparing to unpack .../052-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 232s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 234s Selecting previously unselected package libboost-dev:arm64. 234s Preparing to unpack .../053-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 234s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 234s Selecting previously unselected package libbz2-dev:arm64. 234s Preparing to unpack .../054-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 234s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 234s Selecting previously unselected package libpixman-1-0:arm64. 234s Preparing to unpack .../055-libpixman-1-0_0.42.2-1_arm64.deb ... 234s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 234s Selecting previously unselected package libxcb-render0:arm64. 234s Preparing to unpack .../056-libxcb-render0_1.15-1_arm64.deb ... 234s Unpacking libxcb-render0:arm64 (1.15-1) ... 234s Selecting previously unselected package libxcb-shm0:arm64. 234s Preparing to unpack .../057-libxcb-shm0_1.15-1_arm64.deb ... 234s Unpacking libxcb-shm0:arm64 (1.15-1) ... 234s Selecting previously unselected package libxrender1:arm64. 234s Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 234s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 234s Selecting previously unselected package libcairo2:arm64. 234s Preparing to unpack .../059-libcairo2_1.18.0-1_arm64.deb ... 234s Unpacking libcairo2:arm64 (1.18.0-1) ... 234s Selecting previously unselected package libdatrie1:arm64. 234s Preparing to unpack .../060-libdatrie1_0.2.13-3_arm64.deb ... 234s Unpacking libdatrie1:arm64 (0.2.13-3) ... 234s Selecting previously unselected package libdeflate0:arm64. 234s Preparing to unpack .../061-libdeflate0_1.19-1_arm64.deb ... 234s Unpacking libdeflate0:arm64 (1.19-1) ... 234s Selecting previously unselected package libgraphite2-3:arm64. 234s Preparing to unpack .../062-libgraphite2-3_1.3.14-2_arm64.deb ... 234s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 234s Selecting previously unselected package libharfbuzz0b:arm64. 234s Preparing to unpack .../063-libharfbuzz0b_8.3.0-2_arm64.deb ... 234s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 234s Selecting previously unselected package x11-common. 235s Preparing to unpack .../064-x11-common_1%3a7.7+23ubuntu2_all.deb ... 235s Unpacking x11-common (1:7.7+23ubuntu2) ... 235s Selecting previously unselected package libice6:arm64. 235s Preparing to unpack .../065-libice6_2%3a1.0.10-1build2_arm64.deb ... 235s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 235s Selecting previously unselected package libicu-dev:arm64. 235s Preparing to unpack .../066-libicu-dev_74.2-1ubuntu1_arm64.deb ... 235s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 235s Selecting previously unselected package libjpeg-turbo8:arm64. 235s Preparing to unpack .../067-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 235s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 235s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 235s Preparing to unpack .../068-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 235s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 235s Selecting previously unselected package libjpeg8:arm64. 235s Preparing to unpack .../069-libjpeg8_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 235s Selecting previously unselected package libjpeg8-dev:arm64. 235s Preparing to unpack .../070-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 235s Selecting previously unselected package libjpeg-dev:arm64. 235s Preparing to unpack .../071-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 235s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 235s Selecting previously unselected package libjs-bootstrap. 235s Preparing to unpack .../072-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 235s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 235s Selecting previously unselected package libjs-popper.js. 235s Preparing to unpack .../073-libjs-popper.js_1.16.1+ds-6_all.deb ... 235s Unpacking libjs-popper.js (1.16.1+ds-6) ... 235s Selecting previously unselected package libjs-bootstrap4. 235s Preparing to unpack .../074-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 235s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 235s Selecting previously unselected package libjs-d3. 236s Preparing to unpack .../075-libjs-d3_3.5.17-4_all.deb ... 236s Unpacking libjs-d3 (3.5.17-4) ... 236s Selecting previously unselected package libjs-es5-shim. 236s Preparing to unpack .../076-libjs-es5-shim_4.6.7-2_all.deb ... 236s Unpacking libjs-es5-shim (4.6.7-2) ... 236s Selecting previously unselected package libjs-highlight.js. 236s Preparing to unpack .../077-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 236s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 236s Selecting previously unselected package libjs-jquery. 236s Preparing to unpack .../078-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 236s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 236s Selecting previously unselected package libjs-jquery-datatables. 236s Preparing to unpack .../079-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 236s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 236s Selecting previously unselected package libjs-jquery-datatables-extensions. 236s Preparing to unpack .../080-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 236s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 236s Selecting previously unselected package libjs-sifter.js. 236s Preparing to unpack .../081-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 236s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 236s Selecting previously unselected package libjs-microplugin.js. 236s Preparing to unpack .../082-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 236s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-selectize.js. 236s Preparing to unpack .../083-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 236s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 236s Selecting previously unselected package libjs-jquery-ui. 236s Preparing to unpack .../084-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 236s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 236s Selecting previously unselected package libjs-json. 236s Preparing to unpack .../085-libjs-json_0~20221030+~1.0.8-1_all.deb ... 236s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 236s Selecting previously unselected package libjs-prettify. 236s Preparing to unpack .../086-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 236s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 236s Selecting previously unselected package liblapack3:arm64. 236s Preparing to unpack .../087-liblapack3_3.12.0-3_arm64.deb ... 236s Unpacking liblapack3:arm64 (3.12.0-3) ... 236s Selecting previously unselected package liblapack-dev:arm64. 236s Preparing to unpack .../088-liblapack-dev_3.12.0-3_arm64.deb ... 236s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 237s Selecting previously unselected package liblerc4:arm64. 237s Preparing to unpack .../089-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 237s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 237s Selecting previously unselected package liblua5.4-0:arm64. 237s Preparing to unpack .../090-liblua5.4-0_5.4.6-3_arm64.deb ... 237s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 237s Selecting previously unselected package libncurses-dev:arm64. 237s Preparing to unpack .../091-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 237s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 237s Selecting previously unselected package libthai-data. 237s Preparing to unpack .../092-libthai-data_0.1.29-2_all.deb ... 237s Unpacking libthai-data (0.1.29-2) ... 237s Selecting previously unselected package libthai0:arm64. 238s Preparing to unpack .../093-libthai0_0.1.29-2_arm64.deb ... 238s Unpacking libthai0:arm64 (0.1.29-2) ... 238s Selecting previously unselected package libpango-1.0-0:arm64. 238s Preparing to unpack .../094-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 238s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 238s Selecting previously unselected package libpangoft2-1.0-0:arm64. 238s Preparing to unpack .../095-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 238s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 238s Selecting previously unselected package libpangocairo-1.0-0:arm64. 238s Preparing to unpack .../096-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 238s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 238s Selecting previously unselected package libpaper1:arm64. 238s Preparing to unpack .../097-libpaper1_1.1.29_arm64.deb ... 238s Unpacking libpaper1:arm64 (1.1.29) ... 238s Selecting previously unselected package libpaper-utils. 238s Preparing to unpack .../098-libpaper-utils_1.1.29_arm64.deb ... 238s Unpacking libpaper-utils (1.1.29) ... 238s Selecting previously unselected package libpcre2-16-0:arm64. 239s Preparing to unpack .../099-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-32-0:arm64. 239s Preparing to unpack .../100-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-posix3:arm64. 239s Preparing to unpack .../101-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpcre2-dev:arm64. 239s Preparing to unpack .../102-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 239s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 239s Selecting previously unselected package libpkgconf3:arm64. 239s Preparing to unpack .../103-libpkgconf3_1.8.1-2_arm64.deb ... 239s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 239s Selecting previously unselected package zlib1g-dev:arm64. 239s Preparing to unpack .../104-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 239s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 239s Selecting previously unselected package libpng-dev:arm64. 239s Preparing to unpack .../105-libpng-dev_1.6.43-1_arm64.deb ... 239s Unpacking libpng-dev:arm64 (1.6.43-1) ... 239s Selecting previously unselected package libreadline-dev:arm64. 239s Preparing to unpack .../106-libreadline-dev_8.2-3_arm64.deb ... 239s Unpacking libreadline-dev:arm64 (8.2-3) ... 239s Selecting previously unselected package libsharpyuv0:arm64. 240s Preparing to unpack .../107-libsharpyuv0_1.3.2-0.4_arm64.deb ... 240s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 240s Selecting previously unselected package libsm6:arm64. 240s Preparing to unpack .../108-libsm6_2%3a1.2.3-1build2_arm64.deb ... 240s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 240s Selecting previously unselected package libtcl8.6:arm64. 240s Preparing to unpack .../109-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 240s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 240s Selecting previously unselected package libjbig0:arm64. 240s Preparing to unpack .../110-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 240s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 240s Selecting previously unselected package libwebp7:arm64. 240s Preparing to unpack .../111-libwebp7_1.3.2-0.4_arm64.deb ... 240s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 240s Selecting previously unselected package libtiff6:arm64. 240s Preparing to unpack .../112-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 240s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 240s Selecting previously unselected package libxft2:arm64. 240s Preparing to unpack .../113-libxft2_2.3.6-1_arm64.deb ... 240s Unpacking libxft2:arm64 (2.3.6-1) ... 240s Selecting previously unselected package libxss1:arm64. 240s Preparing to unpack .../114-libxss1_1%3a1.2.3-1build2_arm64.deb ... 240s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 240s Selecting previously unselected package libtk8.6:arm64. 240s Preparing to unpack .../115-libtk8.6_8.6.13-2_arm64.deb ... 240s Unpacking libtk8.6:arm64 (8.6.13-2) ... 240s Selecting previously unselected package libxt6:arm64. 241s Preparing to unpack .../116-libxt6_1%3a1.2.1-1.1_arm64.deb ... 241s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 241s Selecting previously unselected package zip. 241s Preparing to unpack .../117-zip_3.0-13_arm64.deb ... 241s Unpacking zip (3.0-13) ... 241s Selecting previously unselected package unzip. 241s Preparing to unpack .../118-unzip_6.0-28ubuntu3_arm64.deb ... 241s Unpacking unzip (6.0-28ubuntu3) ... 241s Selecting previously unselected package xdg-utils. 241s Preparing to unpack .../119-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 241s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 241s Selecting previously unselected package r-base-core. 241s Preparing to unpack .../120-r-base-core_4.3.2-1build1_arm64.deb ... 241s Unpacking r-base-core (4.3.2-1build1) ... 241s Selecting previously unselected package r-cran-littler. 241s Preparing to unpack .../121-r-cran-littler_0.3.19-1_arm64.deb ... 241s Unpacking r-cran-littler (0.3.19-1) ... 241s Selecting previously unselected package littler. 241s Preparing to unpack .../122-littler_0.3.19-1_all.deb ... 241s Unpacking littler (0.3.19-1) ... 241s Selecting previously unselected package node-bootstrap-sass. 241s Preparing to unpack .../123-node-bootstrap-sass_3.4.3-2_all.deb ... 241s Unpacking node-bootstrap-sass (3.4.3-2) ... 241s Selecting previously unselected package node-html5shiv. 241s Preparing to unpack .../124-node-html5shiv_3.7.3+dfsg-5_all.deb ... 241s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 242s Selecting previously unselected package node-normalize.css. 242s Preparing to unpack .../125-node-normalize.css_8.0.1-5_all.deb ... 242s Unpacking node-normalize.css (8.0.1-5) ... 242s Selecting previously unselected package pandoc-data. 242s Preparing to unpack .../126-pandoc-data_3.1.3-1_all.deb ... 242s Unpacking pandoc-data (3.1.3-1) ... 242s Selecting previously unselected package pandoc. 242s Preparing to unpack .../127-pandoc_3.1.3+ds-2_arm64.deb ... 242s Unpacking pandoc (3.1.3+ds-2) ... 243s Selecting previously unselected package pkgconf-bin. 243s Preparing to unpack .../128-pkgconf-bin_1.8.1-2_arm64.deb ... 243s Unpacking pkgconf-bin (1.8.1-2) ... 243s Selecting previously unselected package pkgconf:arm64. 243s Preparing to unpack .../129-pkgconf_1.8.1-2_arm64.deb ... 243s Unpacking pkgconf:arm64 (1.8.1-2) ... 243s Selecting previously unselected package pkg-config:arm64. 243s Preparing to unpack .../130-pkg-config_1.8.1-2_arm64.deb ... 243s Unpacking pkg-config:arm64 (1.8.1-2) ... 243s Selecting previously unselected package liblzma-dev:arm64. 243s Preparing to unpack .../131-liblzma-dev_5.4.5-0.3_arm64.deb ... 243s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 243s Selecting previously unselected package r-base-dev. 243s Preparing to unpack .../132-r-base-dev_4.3.2-1build1_all.deb ... 243s Unpacking r-base-dev (4.3.2-1build1) ... 243s Selecting previously unselected package pkg-r-autopkgtest. 243s Preparing to unpack .../133-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 243s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 243s Selecting previously unselected package r-bioc-biocgenerics. 243s Preparing to unpack .../134-r-bioc-biocgenerics_0.48.1-2_all.deb ... 243s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 243s Selecting previously unselected package r-bioc-biobase. 243s Preparing to unpack .../135-r-bioc-biobase_2.62.0-1_arm64.deb ... 243s Unpacking r-bioc-biobase (2.62.0-1) ... 243s Selecting previously unselected package r-bioc-s4vectors. 243s Preparing to unpack .../136-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 243s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 243s Selecting previously unselected package r-bioc-iranges. 243s Preparing to unpack .../137-r-bioc-iranges_2.36.0-1_arm64.deb ... 243s Unpacking r-bioc-iranges (2.36.0-1) ... 243s Selecting previously unselected package r-cran-dbi. 243s Preparing to unpack .../138-r-cran-dbi_1.2.2-1_all.deb ... 243s Unpacking r-cran-dbi (1.2.2-1) ... 243s Selecting previously unselected package r-cran-bit. 243s Preparing to unpack .../139-r-cran-bit_4.0.5-1_arm64.deb ... 243s Unpacking r-cran-bit (4.0.5-1) ... 244s Selecting previously unselected package r-cran-bit64. 244s Preparing to unpack .../140-r-cran-bit64_4.0.5-1_arm64.deb ... 244s Unpacking r-cran-bit64 (4.0.5-1) ... 244s Selecting previously unselected package r-cran-rlang. 244s Preparing to unpack .../141-r-cran-rlang_1.1.3-1_arm64.deb ... 244s Unpacking r-cran-rlang (1.1.3-1) ... 244s Selecting previously unselected package r-cran-cli. 244s Preparing to unpack .../142-r-cran-cli_3.6.2-1_arm64.deb ... 244s Unpacking r-cran-cli (3.6.2-1) ... 244s Selecting previously unselected package r-cran-glue. 244s Preparing to unpack .../143-r-cran-glue_1.7.0-1_arm64.deb ... 244s Unpacking r-cran-glue (1.7.0-1) ... 244s Selecting previously unselected package r-cran-lifecycle. 244s Preparing to unpack .../144-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 244s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 244s Selecting previously unselected package r-cran-vctrs. 244s Preparing to unpack .../145-r-cran-vctrs_0.6.5-1_arm64.deb ... 244s Unpacking r-cran-vctrs (0.6.5-1) ... 244s Selecting previously unselected package r-cran-blob. 244s Preparing to unpack .../146-r-cran-blob_1.2.4-1_all.deb ... 244s Unpacking r-cran-blob (1.2.4-1) ... 244s Selecting previously unselected package r-cran-fastmap. 244s Preparing to unpack .../147-r-cran-fastmap_1.1.1-1_arm64.deb ... 244s Unpacking r-cran-fastmap (1.1.1-1) ... 244s Selecting previously unselected package r-cran-cachem. 244s Preparing to unpack .../148-r-cran-cachem_1.0.8-1_arm64.deb ... 244s Unpacking r-cran-cachem (1.0.8-1) ... 244s Selecting previously unselected package r-cran-memoise. 244s Preparing to unpack .../149-r-cran-memoise_2.0.1-1_all.deb ... 244s Unpacking r-cran-memoise (2.0.1-1) ... 244s Selecting previously unselected package r-cran-pkgconfig. 244s Preparing to unpack .../150-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 244s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 244s Selecting previously unselected package r-cran-plogr. 244s Preparing to unpack .../151-r-cran-plogr_0.2.0-3build1_all.deb ... 244s Unpacking r-cran-plogr (0.2.0-3build1) ... 244s Selecting previously unselected package r-cran-cpp11. 244s Preparing to unpack .../152-r-cran-cpp11_0.4.7-1_all.deb ... 244s Unpacking r-cran-cpp11 (0.4.7-1) ... 244s Selecting previously unselected package r-cran-rsqlite. 244s Preparing to unpack .../153-r-cran-rsqlite_2.3.4-1_arm64.deb ... 244s Unpacking r-cran-rsqlite (2.3.4-1) ... 244s Selecting previously unselected package r-cran-curl. 244s Preparing to unpack .../154-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 244s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 244s Selecting previously unselected package r-cran-jsonlite. 244s Preparing to unpack .../155-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 244s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 244s Selecting previously unselected package r-cran-mime. 244s Preparing to unpack .../156-r-cran-mime_0.12-1_arm64.deb ... 244s Unpacking r-cran-mime (0.12-1) ... 244s Selecting previously unselected package r-cran-sys. 244s Preparing to unpack .../157-r-cran-sys_3.4.2-1_arm64.deb ... 244s Unpacking r-cran-sys (3.4.2-1) ... 244s Selecting previously unselected package r-cran-askpass. 244s Preparing to unpack .../158-r-cran-askpass_1.2.0-1_arm64.deb ... 244s Unpacking r-cran-askpass (1.2.0-1) ... 244s Selecting previously unselected package r-cran-openssl. 244s Preparing to unpack .../159-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 244s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 244s Selecting previously unselected package r-cran-r6. 244s Preparing to unpack .../160-r-cran-r6_2.5.1-1_all.deb ... 244s Unpacking r-cran-r6 (2.5.1-1) ... 244s Selecting previously unselected package r-cran-httr. 245s Preparing to unpack .../161-r-cran-httr_1.4.7+dfsg-1_all.deb ... 245s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 245s Selecting previously unselected package r-cran-png. 245s Preparing to unpack .../162-r-cran-png_0.1-8-1_arm64.deb ... 245s Unpacking r-cran-png (0.1-8-1) ... 245s Selecting previously unselected package r-bioc-zlibbioc. 245s Preparing to unpack .../163-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 245s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 245s Selecting previously unselected package r-bioc-xvector. 245s Preparing to unpack .../164-r-bioc-xvector_0.42.0-1_arm64.deb ... 245s Unpacking r-bioc-xvector (0.42.0-1) ... 245s Selecting previously unselected package r-cran-bitops. 245s Preparing to unpack .../165-r-cran-bitops_1.0-7-1_arm64.deb ... 245s Unpacking r-cran-bitops (1.0-7-1) ... 245s Selecting previously unselected package r-cran-rcurl. 245s Preparing to unpack .../166-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 245s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 245s Selecting previously unselected package r-bioc-genomeinfodbdata. 245s Preparing to unpack .../167-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 245s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 245s Selecting previously unselected package r-bioc-genomeinfodb. 245s Preparing to unpack .../168-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 245s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 245s Selecting previously unselected package r-cran-crayon. 245s Preparing to unpack .../169-r-cran-crayon_1.5.2-1_all.deb ... 245s Unpacking r-cran-crayon (1.5.2-1) ... 245s Selecting previously unselected package r-bioc-biostrings. 245s Preparing to unpack .../170-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 245s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 245s Selecting previously unselected package r-bioc-keggrest. 245s Preparing to unpack .../171-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 245s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 245s Selecting previously unselected package r-bioc-annotationdbi. 246s Preparing to unpack .../172-r-bioc-annotationdbi_1.64.1-1_all.deb ... 246s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 246s Selecting previously unselected package r-cran-xml. 246s Preparing to unpack .../173-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 246s Unpacking r-cran-xml (3.99-0.16.1-1) ... 246s Selecting previously unselected package r-cran-xtable. 246s Preparing to unpack .../174-r-cran-xtable_1%3a1.8-4-2_all.deb ... 246s Unpacking r-cran-xtable (1:1.8-4-2) ... 246s Selecting previously unselected package r-bioc-annotate. 246s Preparing to unpack .../175-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 246s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 246s Selecting previously unselected package r-bioc-genomicranges. 246s Preparing to unpack .../176-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 246s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 246s Selecting previously unselected package r-cran-lazyeval. 246s Preparing to unpack .../177-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 246s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 246s Selecting previously unselected package r-bioc-annotationfilter. 246s Preparing to unpack .../178-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 246s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 246s Selecting previously unselected package r-cran-generics. 246s Preparing to unpack .../179-r-cran-generics_0.1.3-1_all.deb ... 246s Unpacking r-cran-generics (0.1.3-1) ... 246s Selecting previously unselected package r-cran-magrittr. 246s Preparing to unpack .../180-r-cran-magrittr_2.0.3-1_arm64.deb ... 246s Unpacking r-cran-magrittr (2.0.3-1) ... 246s Selecting previously unselected package r-cran-fansi. 246s Preparing to unpack .../181-r-cran-fansi_1.0.5-1_arm64.deb ... 246s Unpacking r-cran-fansi (1.0.5-1) ... 246s Selecting previously unselected package r-cran-utf8. 246s Preparing to unpack .../182-r-cran-utf8_1.2.4-1_arm64.deb ... 246s Unpacking r-cran-utf8 (1.2.4-1) ... 246s Selecting previously unselected package r-cran-pillar. 246s Preparing to unpack .../183-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 246s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 246s Selecting previously unselected package r-cran-tibble. 246s Preparing to unpack .../184-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 246s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 247s Selecting previously unselected package r-cran-withr. 247s Preparing to unpack .../185-r-cran-withr_2.5.0-1_all.deb ... 247s Unpacking r-cran-withr (2.5.0-1) ... 247s Selecting previously unselected package r-cran-tidyselect. 247s Preparing to unpack .../186-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 247s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 247s Selecting previously unselected package r-cran-dplyr. 247s Preparing to unpack .../187-r-cran-dplyr_1.1.4-1_arm64.deb ... 247s Unpacking r-cran-dplyr (1.1.4-1) ... 247s Selecting previously unselected package r-cran-purrr. 247s Preparing to unpack .../188-r-cran-purrr_1.0.2-1_arm64.deb ... 247s Unpacking r-cran-purrr (1.0.2-1) ... 247s Selecting previously unselected package r-cran-stringi. 247s Preparing to unpack .../189-r-cran-stringi_1.8.3-1_arm64.deb ... 247s Unpacking r-cran-stringi (1.8.3-1) ... 247s Selecting previously unselected package r-cran-stringr. 247s Preparing to unpack .../190-r-cran-stringr_1.5.1-1_all.deb ... 247s Unpacking r-cran-stringr (1.5.1-1) ... 247s Selecting previously unselected package r-cran-tidyr. 247s Preparing to unpack .../191-r-cran-tidyr_1.3.1-1_arm64.deb ... 247s Unpacking r-cran-tidyr (1.3.1-1) ... 247s Selecting previously unselected package r-cran-dbplyr. 247s Preparing to unpack .../192-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 247s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 248s Selecting previously unselected package r-cran-filelock. 248s Preparing to unpack .../193-r-cran-filelock_1.0.3-1_arm64.deb ... 248s Unpacking r-cran-filelock (1.0.3-1) ... 248s Selecting previously unselected package r-bioc-biocfilecache. 248s Preparing to unpack .../194-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 248s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 248s Selecting previously unselected package r-cran-biocmanager. 248s Preparing to unpack .../195-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 248s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 248s Selecting previously unselected package r-bioc-biocversion. 248s Preparing to unpack .../196-r-bioc-biocversion_3.18.1-1_all.deb ... 248s Unpacking r-bioc-biocversion (3.18.1-1) ... 248s Selecting previously unselected package r-cran-rappdirs. 248s Preparing to unpack .../197-r-cran-rappdirs_0.3.3-1_arm64.deb ... 248s Unpacking r-cran-rappdirs (0.3.3-1) ... 248s Selecting previously unselected package r-cran-yaml. 248s Preparing to unpack .../198-r-cran-yaml_2.3.8-1_arm64.deb ... 248s Unpacking r-cran-yaml (2.3.8-1) ... 248s Selecting previously unselected package r-cran-pkgkitten. 248s Preparing to unpack .../199-r-cran-pkgkitten_0.2.3-1_all.deb ... 248s Unpacking r-cran-pkgkitten (0.2.3-1) ... 248s Selecting previously unselected package r-cran-rcpp. 248s Preparing to unpack .../200-r-cran-rcpp_1.0.12-1_arm64.deb ... 248s Unpacking r-cran-rcpp (1.0.12-1) ... 248s Selecting previously unselected package r-cran-later. 248s Preparing to unpack .../201-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 248s Unpacking r-cran-later (1.3.2+dfsg-1) ... 248s Selecting previously unselected package r-cran-promises. 248s Preparing to unpack .../202-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 248s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 248s Selecting previously unselected package r-cran-httpuv. 248s Preparing to unpack .../203-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 248s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 248s Selecting previously unselected package r-cran-base64enc. 248s Preparing to unpack .../204-r-cran-base64enc_0.1-3-3_arm64.deb ... 248s Unpacking r-cran-base64enc (0.1-3-3) ... 248s Selecting previously unselected package r-cran-digest. 248s Preparing to unpack .../205-r-cran-digest_0.6.34-1_arm64.deb ... 248s Unpacking r-cran-digest (0.6.34-1) ... 248s Selecting previously unselected package r-cran-ellipsis. 248s Preparing to unpack .../206-r-cran-ellipsis_0.3.2-2_arm64.deb ... 248s Unpacking r-cran-ellipsis (0.3.2-2) ... 248s Selecting previously unselected package r-cran-htmltools. 249s Preparing to unpack .../207-r-cran-htmltools_0.5.7-1_arm64.deb ... 249s Unpacking r-cran-htmltools (0.5.7-1) ... 249s Selecting previously unselected package r-cran-fontawesome. 249s Preparing to unpack .../208-r-cran-fontawesome_0.5.2-1_all.deb ... 249s Unpacking r-cran-fontawesome (0.5.2-1) ... 249s Selecting previously unselected package r-cran-sourcetools. 249s Preparing to unpack .../209-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 249s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 249s Selecting previously unselected package r-cran-commonmark. 249s Preparing to unpack .../210-r-cran-commonmark_1.9.1-1_arm64.deb ... 249s Unpacking r-cran-commonmark (1.9.1-1) ... 249s Selecting previously unselected package r-cran-jquerylib. 249s Preparing to unpack .../211-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 249s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 249s Selecting previously unselected package r-cran-fs. 249s Preparing to unpack .../212-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 249s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 249s Selecting previously unselected package r-cran-sass. 249s Preparing to unpack .../213-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 249s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 249s Selecting previously unselected package r-cran-bslib. 249s Preparing to unpack .../214-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 249s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 249s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 249s Preparing to unpack .../215-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 249s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 249s Selecting previously unselected package r-cran-shiny. 250s Preparing to unpack .../216-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 250s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 250s Selecting previously unselected package r-cran-evaluate. 250s Preparing to unpack .../217-r-cran-evaluate_0.23-1_all.deb ... 250s Unpacking r-cran-evaluate (0.23-1) ... 250s Selecting previously unselected package r-cran-xfun. 250s Preparing to unpack .../218-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 250s Unpacking r-cran-xfun (0.41+dfsg-1) ... 250s Selecting previously unselected package r-cran-highr. 250s Preparing to unpack .../219-r-cran-highr_0.10+dfsg-1_all.deb ... 250s Unpacking r-cran-highr (0.10+dfsg-1) ... 250s Selecting previously unselected package libjs-mathjax. 250s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 250s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 251s Selecting previously unselected package r-cran-knitr. 251s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 251s Unpacking r-cran-knitr (1.45+dfsg-1) ... 251s Selecting previously unselected package r-cran-tinytex. 251s Preparing to unpack .../222-r-cran-tinytex_0.49-1_all.deb ... 251s Unpacking r-cran-tinytex (0.49-1) ... 252s Selecting previously unselected package libjs-modernizr. 252s Preparing to unpack .../223-libjs-modernizr_2.6.2+ds1-5_all.deb ... 252s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 252s Selecting previously unselected package r-cran-rmarkdown. 252s Preparing to unpack .../224-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 252s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 252s Selecting previously unselected package r-cran-htmlwidgets. 252s Preparing to unpack .../225-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 252s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 252s Selecting previously unselected package r-cran-crosstalk. 252s Preparing to unpack .../226-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 252s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 252s Selecting previously unselected package r-cran-dt. 253s Preparing to unpack .../227-r-cran-dt_0.31+dfsg-1_all.deb ... 253s Unpacking r-cran-dt (0.31+dfsg-1) ... 253s Selecting previously unselected package r-bioc-interactivedisplaybase. 253s Preparing to unpack .../228-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 253s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 253s Selecting previously unselected package r-bioc-annotationhub. 253s Preparing to unpack .../229-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 253s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 253s Selecting previously unselected package r-bioc-biocio. 253s Preparing to unpack .../230-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 253s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 253s Selecting previously unselected package r-cran-formatr. 253s Preparing to unpack .../231-r-cran-formatr_1.14-1_all.deb ... 253s Unpacking r-cran-formatr (1.14-1) ... 253s Selecting previously unselected package r-cran-lambda.r. 253s Preparing to unpack .../232-r-cran-lambda.r_1.2.4-2build1_all.deb ... 253s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 253s Selecting previously unselected package r-cran-futile.options. 253s Preparing to unpack .../233-r-cran-futile.options_1.0.1-3build1_all.deb ... 253s Unpacking r-cran-futile.options (1.0.1-3build1) ... 253s Selecting previously unselected package r-cran-futile.logger. 253s Preparing to unpack .../234-r-cran-futile.logger_1.4.3-4build1_all.deb ... 253s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 253s Selecting previously unselected package r-cran-snow. 253s Preparing to unpack .../235-r-cran-snow_1%3a0.4.4-2_all.deb ... 253s Unpacking r-cran-snow (1:0.4.4-2) ... 253s Selecting previously unselected package r-cran-codetools. 253s Preparing to unpack .../236-r-cran-codetools_0.2-19-1_all.deb ... 253s Unpacking r-cran-codetools (0.2-19-1) ... 253s Selecting previously unselected package r-cran-bh. 253s Preparing to unpack .../237-r-cran-bh_1.84.0-1_all.deb ... 253s Unpacking r-cran-bh (1.84.0-1) ... 253s Selecting previously unselected package r-bioc-biocparallel. 253s Preparing to unpack .../238-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 253s Unpacking r-bioc-biocparallel (1.36.0-1) ... 253s Selecting previously unselected package r-cran-hms. 253s Preparing to unpack .../239-r-cran-hms_1.1.3-1_all.deb ... 253s Unpacking r-cran-hms (1.1.3-1) ... 253s Selecting previously unselected package r-cran-prettyunits. 253s Preparing to unpack .../240-r-cran-prettyunits_1.2.0-1_all.deb ... 253s Unpacking r-cran-prettyunits (1.2.0-1) ... 253s Selecting previously unselected package r-cran-progress. 253s Preparing to unpack .../241-r-cran-progress_1.2.3-1_all.deb ... 253s Unpacking r-cran-progress (1.2.3-1) ... 253s Selecting previously unselected package r-cran-xml2. 253s Preparing to unpack .../242-r-cran-xml2_1.3.6-1_arm64.deb ... 253s Unpacking r-cran-xml2 (1.3.6-1) ... 253s Selecting previously unselected package r-bioc-biomart. 253s Preparing to unpack .../243-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 253s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 253s Selecting previously unselected package r-bioc-rhtslib. 253s Preparing to unpack .../244-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 253s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 253s Selecting previously unselected package r-bioc-rsamtools. 253s Preparing to unpack .../245-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 253s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 254s Selecting previously unselected package r-cran-matrixstats. 254s Preparing to unpack .../246-r-cran-matrixstats_1.2.0-1_arm64.deb ... 254s Unpacking r-cran-matrixstats (1.2.0-1) ... 254s Selecting previously unselected package r-bioc-matrixgenerics. 254s Preparing to unpack .../247-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 254s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 254s Selecting previously unselected package r-cran-lattice. 254s Preparing to unpack .../248-r-cran-lattice_0.22-5-1_arm64.deb ... 254s Unpacking r-cran-lattice (0.22-5-1) ... 254s Selecting previously unselected package r-cran-matrix. 254s Preparing to unpack .../249-r-cran-matrix_1.6-5-1_arm64.deb ... 254s Unpacking r-cran-matrix (1.6-5-1) ... 254s Selecting previously unselected package r-cran-abind. 254s Preparing to unpack .../250-r-cran-abind_1.4-5-2_all.deb ... 254s Unpacking r-cran-abind (1.4-5-2) ... 254s Selecting previously unselected package r-bioc-s4arrays. 254s Preparing to unpack .../251-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 254s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 254s Selecting previously unselected package r-bioc-sparsearray. 254s Preparing to unpack .../252-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 254s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 254s Selecting previously unselected package r-bioc-delayedarray. 254s Preparing to unpack .../253-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 254s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 254s Selecting previously unselected package r-bioc-summarizedexperiment. 255s Preparing to unpack .../254-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 255s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 255s Selecting previously unselected package r-bioc-genomicalignments. 255s Preparing to unpack .../255-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 255s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 255s Selecting previously unselected package r-cran-rjson. 255s Preparing to unpack .../256-r-cran-rjson_0.2.21-1_arm64.deb ... 255s Unpacking r-cran-rjson (0.2.21-1) ... 255s Selecting previously unselected package r-cran-restfulr. 255s Preparing to unpack .../257-r-cran-restfulr_0.0.15-1_arm64.deb ... 255s Unpacking r-cran-restfulr (0.0.15-1) ... 255s Selecting previously unselected package r-bioc-rtracklayer. 255s Preparing to unpack .../258-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 255s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 255s Selecting previously unselected package r-bioc-bsgenome. 255s Preparing to unpack .../259-r-bioc-bsgenome_1.70.2-1_all.deb ... 255s Unpacking r-bioc-bsgenome (1.70.2-1) ... 255s Selecting previously unselected package r-cran-locfit. 255s Preparing to unpack .../260-r-cran-locfit_1.5-9.8-1_arm64.deb ... 255s Unpacking r-cran-locfit (1.5-9.8-1) ... 255s Selecting previously unselected package r-cran-gtable. 255s Preparing to unpack .../261-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 255s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 255s Selecting previously unselected package r-cran-isoband. 255s Preparing to unpack .../262-r-cran-isoband_0.2.7-1_arm64.deb ... 255s Unpacking r-cran-isoband (0.2.7-1) ... 256s Selecting previously unselected package r-cran-mass. 256s Preparing to unpack .../263-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 256s Unpacking r-cran-mass (7.3-60.0.1-1) ... 256s Selecting previously unselected package r-cran-nlme. 256s Preparing to unpack .../264-r-cran-nlme_3.1.164-1_arm64.deb ... 256s Unpacking r-cran-nlme (3.1.164-1) ... 256s Selecting previously unselected package r-cran-mgcv. 256s Preparing to unpack .../265-r-cran-mgcv_1.9-1-1_arm64.deb ... 256s Unpacking r-cran-mgcv (1.9-1-1) ... 256s Selecting previously unselected package r-cran-farver. 256s Preparing to unpack .../266-r-cran-farver_2.1.1-1_arm64.deb ... 256s Unpacking r-cran-farver (2.1.1-1) ... 256s Selecting previously unselected package r-cran-labeling. 256s Preparing to unpack .../267-r-cran-labeling_0.4.3-1_all.deb ... 256s Unpacking r-cran-labeling (0.4.3-1) ... 256s Selecting previously unselected package r-cran-colorspace. 256s Preparing to unpack .../268-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 256s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 256s Selecting previously unselected package r-cran-munsell. 257s Preparing to unpack .../269-r-cran-munsell_0.5.0-2build1_all.deb ... 257s Unpacking r-cran-munsell (0.5.0-2build1) ... 257s Selecting previously unselected package r-cran-rcolorbrewer. 257s Preparing to unpack .../270-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 257s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 257s Selecting previously unselected package r-cran-viridislite. 257s Preparing to unpack .../271-r-cran-viridislite_0.4.2-2_all.deb ... 257s Unpacking r-cran-viridislite (0.4.2-2) ... 257s Selecting previously unselected package r-cran-scales. 257s Preparing to unpack .../272-r-cran-scales_1.3.0-1_all.deb ... 257s Unpacking r-cran-scales (1.3.0-1) ... 257s Selecting previously unselected package r-cran-ggplot2. 257s Preparing to unpack .../273-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 257s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 257s Selecting previously unselected package r-cran-rcpparmadillo. 257s Preparing to unpack .../274-r-cran-rcpparmadillo_0.12.8.0.0-1_arm64.deb ... 257s Unpacking r-cran-rcpparmadillo (0.12.8.0.0-1) ... 257s Selecting previously unselected package r-bioc-deseq2. 257s Preparing to unpack .../275-r-bioc-deseq2_1.42.0+dfsg-1_arm64.deb ... 257s Unpacking r-bioc-deseq2 (1.42.0+dfsg-1) ... 257s Selecting previously unselected package r-cran-hwriter. 257s Preparing to unpack .../276-r-cran-hwriter_1.3.2.1-1_all.deb ... 257s Unpacking r-cran-hwriter (1.3.2.1-1) ... 257s Selecting previously unselected package r-cran-statmod. 257s Preparing to unpack .../277-r-cran-statmod_1.5.0-1_arm64.deb ... 257s Unpacking r-cran-statmod (1.5.0-1) ... 257s Selecting previously unselected package r-bioc-geneplotter. 258s Preparing to unpack .../278-r-bioc-geneplotter_1.80.0+dfsg-1_all.deb ... 258s Unpacking r-bioc-geneplotter (1.80.0+dfsg-1) ... 258s Selecting previously unselected package r-cran-survival. 258s Preparing to unpack .../279-r-cran-survival_3.5-8-1_arm64.deb ... 258s Unpacking r-cran-survival (3.5-8-1) ... 258s Selecting previously unselected package r-bioc-genefilter. 258s Preparing to unpack .../280-r-bioc-genefilter_1.84.0-1_arm64.deb ... 258s Unpacking r-bioc-genefilter (1.84.0-1) ... 258s Selecting previously unselected package r-bioc-dexseq. 258s Preparing to unpack .../281-r-bioc-dexseq_1.48.0+dfsg-1_all.deb ... 258s Unpacking r-bioc-dexseq (1.48.0+dfsg-1) ... 258s Selecting previously unselected package r-bioc-limma. 258s Preparing to unpack .../282-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 258s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 258s Selecting previously unselected package r-bioc-edger. 258s Preparing to unpack .../283-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 258s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 258s Selecting previously unselected package r-bioc-genomicfeatures. 258s Preparing to unpack .../284-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 258s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 259s Selecting previously unselected package r-bioc-protgenerics. 259s Preparing to unpack .../285-r-bioc-protgenerics_1.34.0-1_all.deb ... 259s Unpacking r-bioc-protgenerics (1.34.0-1) ... 259s Selecting previously unselected package r-bioc-ensembldb. 259s Preparing to unpack .../286-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 259s Selecting previously unselected package r-cran-locfdr. 259s Preparing to unpack .../287-r-cran-locfdr_1.1-8-2_all.deb ... 259s Unpacking r-cran-locfdr (1.1-8-2) ... 259s Selecting previously unselected package r-cran-pbapply. 259s Preparing to unpack .../288-r-cran-pbapply_1.7-2-1_all.deb ... 259s Unpacking r-cran-pbapply (1.7-2-1) ... 259s Selecting previously unselected package r-cran-boot. 259s Preparing to unpack .../289-r-cran-boot_1.3-30-1_all.deb ... 259s Unpacking r-cran-boot (1.3-30-1) ... 259s Selecting previously unselected package r-bioc-saturn. 259s Preparing to unpack .../290-r-bioc-saturn_1.10.0+dfsg-1_all.deb ... 259s Unpacking r-bioc-saturn (1.10.0+dfsg-1) ... 259s Selecting previously unselected package r-bioc-sva. 259s Preparing to unpack .../291-r-bioc-sva_3.50.0-1_arm64.deb ... 259s Unpacking r-bioc-sva (3.50.0-1) ... 259s Selecting previously unselected package r-cran-clipr. 259s Preparing to unpack .../292-r-cran-clipr_0.8.0-1_all.deb ... 259s Unpacking r-cran-clipr (0.8.0-1) ... 259s Selecting previously unselected package r-cran-tzdb. 261s Preparing to unpack .../293-r-cran-tzdb_0.4.0-2_arm64.deb ... 261s Unpacking r-cran-tzdb (0.4.0-2) ... 261s Selecting previously unselected package r-cran-vroom. 261s Preparing to unpack .../294-r-cran-vroom_1.6.5-1_arm64.deb ... 261s Unpacking r-cran-vroom (1.6.5-1) ... 261s Selecting previously unselected package r-cran-readr. 261s Preparing to unpack .../295-r-cran-readr_2.1.5-1_arm64.deb ... 261s Unpacking r-cran-readr (2.1.5-1) ... 261s Selecting previously unselected package r-bioc-pfamanalyzer. 261s Preparing to unpack .../296-r-bioc-pfamanalyzer_1.2.0+dfsg-1_all.deb ... 261s Unpacking r-bioc-pfamanalyzer (1.2.0+dfsg-1) ... 261s Selecting previously unselected package r-cran-plyr. 261s Preparing to unpack .../297-r-cran-plyr_1.8.9-1_arm64.deb ... 261s Unpacking r-cran-plyr (1.8.9-1) ... 261s Selecting previously unselected package r-cran-reshape2. 261s Preparing to unpack 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to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 261s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 261s Setting up libpkgconf3:arm64 (1.8.1-2) ... 261s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 261s Setting up libjs-d3 (3.5.17-4) ... 261s Setting up fonts-dejavu-mono (2.37-8) ... 261s Setting up libmpc3:arm64 (1.3.1-1) ... 261s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 261s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 261s Setting up icu-devtools (74.2-1ubuntu1) ... 261s Setting up fonts-dejavu-core (2.37-8) ... 261s Setting up pkgconf-bin (1.8.1-2) ... 261s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 261s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 261s Setting up libwebp7:arm64 (1.3.2-0.4) ... 261s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 261s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 261s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 261s Setting up 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to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 262s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 262s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 262s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 262s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 262s Setting up pkgconf:arm64 (1.8.1-2) ... 262s Setting up libthai0:arm64 (0.1.29-2) ... 262s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 262s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 262s Setting up pandoc (3.1.3+ds-2) ... 262s Setting up liblapack-dev:arm64 (3.12.0-3) ... 262s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 262s Setting up pkg-config:arm64 (1.8.1-2) ... 262s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 262s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 262s 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libreadline-dev:arm64 (8.2-3) ... 264s Setting up libcairo2:arm64 (1.18.0-1) ... 264s Setting up gcc-13 (13.2.0-17ubuntu2) ... 264s Setting up libxt6:arm64 (1:1.2.1-1.1) ... 264s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 264s Setting up cpp (4:13.2.0-7ubuntu1) ... 264s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 264s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 264s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 264s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 264s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 264s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 264s Setting up g++-13 (13.2.0-17ubuntu2) ... 264s Setting up libpng-dev:arm64 (1.6.43-1) ... 264s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 264s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 264s Setting up gcc (4:13.2.0-7ubuntu1) ... 264s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 264s Setting up r-base-core (4.3.2-1build1) ... 264s 264s Creating config file /etc/R/Renviron with new version 264s Setting up r-cran-crayon (1.5.2-1) ... 264s Setting up r-cran-locfdr (1.1-8-2) ... 264s Setting up r-cran-labeling (0.4.3-1) ... 264s Setting up r-cran-sourcetools (0.1.7-1-1) ... 264s Setting up r-cran-futile.options (1.0.1-3build1) ... 264s Setting up r-cran-lattice (0.22-5-1) ... 264s Setting up r-cran-nlme (3.1.164-1) ... 264s Setting up r-cran-farver (2.1.1-1) ... 264s Setting up r-cran-formatr (1.14-1) ... 264s Setting up r-cran-pbapply (1.7-2-1) ... 264s Setting up r-cran-xml (3.99-0.16.1-1) ... 264s Setting up r-cran-viridislite (0.4.2-2) ... 264s Setting up r-cran-locfit (1.5-9.8-1) ... 264s Setting up r-cran-statmod (1.5.0-1) ... 264s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 264s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 264s Setting up r-cran-lazyeval (0.2.2-1build1) ... 264s Setting up r-cran-clipr (0.8.0-1) ... 264s Setting up r-cran-commonmark (1.9.1-1) ... 264s Setting up r-cran-r6 (2.5.1-1) ... 264s Setting up r-cran-pkgkitten (0.2.3-1) ... 264s Setting up r-cran-magrittr (2.0.3-1) ... 264s Setting up r-cran-rappdirs (0.3.3-1) ... 264s Setting up r-cran-filelock (1.0.3-1) ... 264s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 264s Setting up r-cran-littler (0.3.19-1) ... 264s Setting up r-cran-bh (1.84.0-1) ... 264s Setting up r-cran-fs (1.6.3+dfsg-1) ... 264s Setting up r-cran-rcpp (1.0.12-1) ... 264s Setting up r-cran-curl (5.2.0+dfsg-1) ... 264s Setting up r-cran-codetools (0.2-19-1) ... 264s Setting up r-cran-boot (1.3-30-1) ... 264s Setting up r-bioc-biocgenerics (0.48.1-2) ... 264s Setting up r-cran-rlang (1.1.3-1) ... 264s Setting up r-cran-matrixstats (1.2.0-1) ... 264s Setting up littler (0.3.19-1) ... 264s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 264s Setting up r-cran-xfun (0.41+dfsg-1) ... 264s Setting up r-cran-sys (3.4.2-1) ... 264s Setting up r-cran-plogr (0.2.0-3build1) ... 264s Setting up r-cran-withr (2.5.0-1) ... 264s Setting up r-cran-mime (0.12-1) ... 264s Setting up r-cran-generics (0.1.3-1) ... 264s Setting up r-cran-base64enc (0.1-3-3) ... 264s Setting up r-cran-abind (1.4-5-2) ... 264s Setting up r-cran-digest (0.6.34-1) ... 264s Setting up r-cran-yaml (2.3.8-1) ... 264s Setting up r-cran-lambda.r (1.2.4-2build1) ... 264s Setting up r-bioc-protgenerics (1.34.0-1) ... 264s Setting up r-cran-evaluate (0.23-1) ... 264s Setting up r-cran-dbi (1.2.2-1) ... 264s Setting up r-cran-highr (0.10+dfsg-1) ... 264s Setting up r-cran-prettyunits (1.2.0-1) ... 264s Setting up r-cran-fansi (1.0.5-1) ... 264s Setting up r-cran-mass (7.3-60.0.1-1) ... 264s Setting up r-cran-snow (1:0.4.4-2) ... 264s Setting up r-cran-glue (1.7.0-1) ... 264s Setting up r-cran-bit (4.0.5-1) ... 264s Setting up r-cran-xtable (1:1.8-4-2) ... 264s Setting up r-cran-cli (3.6.2-1) ... 264s Setting up gfortran (4:13.2.0-7ubuntu1) ... 264s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 264s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 264s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 264s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 264s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 264s Setting up r-cran-bitops (1.0-7-1) ... 264s Setting up r-bioc-biocversion (3.18.1-1) ... 264s Setting up r-cran-bit64 (4.0.5-1) ... 264s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 264s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 264s Setting up r-cran-askpass (1.2.0-1) ... 264s Setting up r-cran-fastmap (1.1.1-1) ... 264s Setting up r-cran-png (0.1-8-1) ... 264s Setting up r-bioc-biobase (2.62.0-1) ... 264s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 264s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 264s Setting up r-cran-utf8 (1.2.4-1) ... 264s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 264s Setting up r-cran-stringi (1.8.3-1) ... 264s Setting up r-cran-hwriter (1.3.2.1-1) ... 264s Setting up r-cran-cpp11 (0.4.7-1) ... 264s Setting up r-cran-plyr (1.8.9-1) ... 264s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 264s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 264s Setting up r-cran-isoband (0.2.7-1) ... 264s Setting up r-cran-futile.logger (1.4.3-4build1) ... 264s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 264s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 264s Setting up r-cran-later (1.3.2+dfsg-1) ... 264s Setting up r-cran-matrix (1.6-5-1) ... 264s Setting up r-cran-tinytex (0.49-1) ... 264s Setting up r-bioc-tximport (1.30.0+dfsg-1) ... 264s Setting up r-cran-knitr (1.45+dfsg-1) ... 264s Setting up r-cran-mgcv (1.9-1-1) ... 264s Setting up g++ (4:13.2.0-7ubuntu1) ... 264s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 264s Setting up r-cran-cachem (1.0.8-1) ... 264s Setting up build-essential (12.10ubuntu1) ... 264s Setting up r-cran-rcpparmadillo (0.12.8.0.0-1) ... 264s Setting up r-bioc-iranges (2.36.0-1) ... 264s Setting up r-cran-rjson (0.2.21-1) ... 264s Setting up r-cran-tzdb (0.4.0-2) ... 264s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 264s Setting up r-cran-restfulr (0.0.15-1) ... 264s Setting up r-cran-vctrs (0.6.5-1) ... 264s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 264s Setting up r-cran-ellipsis (0.3.2-2) ... 264s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 264s Setting up r-base-dev (4.3.2-1build1) ... 264s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 264s Setting up r-cran-stringr (1.5.1-1) ... 264s Setting up r-bioc-biocparallel (1.36.0-1) ... 264s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 264s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 264s Setting up r-cran-venndiagram (1.7.3-1) ... 264s Setting up r-cran-xml2 (1.3.6-1) ... 264s Setting up r-cran-munsell (0.5.0-2build1) ... 264s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 264s Setting up r-cran-survival (3.5-8-1) ... 264s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 264s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 264s Setting up r-cran-reshape2 (1.4.4-2build1) ... 264s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 264s Setting up r-cran-httr (1.4.7+dfsg-1) ... 264s Setting up r-cran-gridextra (2.3-3build1) ... 264s Setting up r-cran-hms (1.1.3-1) ... 264s Setting up r-cran-scales (1.3.0-1) ... 264s Setting up r-cran-memoise (2.0.1-1) ... 264s Setting up r-cran-promises (1.2.1+dfsg-1) ... 264s Setting up r-cran-purrr (1.0.2-1) ... 264s Setting up r-cran-blob (1.2.4-1) ... 264s Setting up r-cran-htmltools (0.5.7-1) ... 264s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 264s Setting up r-bioc-xvector (0.42.0-1) ... 264s Setting up r-cran-sass (0.4.8+dfsg-1) ... 264s Setting up r-cran-dplyr (1.1.4-1) ... 264s Setting up r-cran-rsqlite (2.3.4-1) ... 264s Setting up r-cran-progress (1.2.3-1) ... 264s Setting up r-cran-vroom (1.6.5-1) ... 264s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 264s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 264s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 264s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 264s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 264s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 264s Setting up r-cran-fontawesome (0.5.2-1) ... 264s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 264s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 264s Setting up r-cran-readr (2.1.5-1) ... 264s Setting up r-cran-tidyr (1.3.1-1) ... 264s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 264s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 264s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 264s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 264s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 264s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 264s Setting up r-bioc-deseq2 (1.42.0+dfsg-1) ... 264s Setting up r-bioc-annotationdbi (1.64.1-1) ... 264s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 264s Setting up r-bioc-pfamanalyzer (1.2.0+dfsg-1) ... 264s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 264s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 264s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 264s Setting up r-bioc-saturn (1.10.0+dfsg-1) ... 264s Setting up r-bioc-genefilter (1.84.0-1) ... 264s Setting up r-bioc-genomicalignments (1.38.2-1) ... 264s Setting up r-bioc-geneplotter (1.80.0+dfsg-1) ... 264s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 264s Setting up r-bioc-rtracklayer (1.62.0-1) ... 264s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 264s Setting up r-bioc-dexseq (1.48.0+dfsg-1) ... 264s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 264s Setting up r-bioc-sva (3.50.0-1) ... 264s Setting up r-bioc-bsgenome (1.70.2-1) ... 264s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 264s Setting up r-cran-dt (0.31+dfsg-1) ... 264s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 264s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 264s Setting up r-bioc-tximeta (1.20.3+dfsg-1) ... 264s Setting up r-bioc-isoformswitchanalyzer (2.2.0+ds-1) ... 264s Setting up autopkgtest-satdep (0) ... 264s Processing triggers for man-db (2.12.0-3) ... 266s Processing triggers for install-info (7.1-3) ... 266s Processing triggers for libc-bin (2.39-0ubuntu2) ... 281s (Reading database ... 118424 files and directories currently installed.) 281s Removing autopkgtest-satdep (0) ... 282s autopkgtest [13:59:13]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 282s autopkgtest [13:59:13]: test pkg-r-autopkgtest: [----------------------- 283s Test: Try to load the R library IsoformSwitchAnalyzeR 283s 283s R version 4.3.2 (2023-10-31) -- "Eye Holes" 283s Copyright (C) 2023 The R Foundation for Statistical Computing 283s Platform: aarch64-unknown-linux-gnu (64-bit) 283s 283s R is free software and comes with ABSOLUTELY NO WARRANTY. 283s You are welcome to redistribute it under certain conditions. 283s Type 'license()' or 'licence()' for distribution details. 283s 283s R is a collaborative project with many contributors. 283s Type 'contributors()' for more information and 283s 'citation()' on how to cite R or R packages in publications. 283s 283s Type 'demo()' for some demos, 'help()' for on-line help, or 283s 'help.start()' for an HTML browser interface to help. 283s Type 'q()' to quit R. 283s 283s > library('IsoformSwitchAnalyzeR') 283s Loading required package: limma 283s Loading required package: DEXSeq 283s Loading required package: BiocParallel 283s Loading required package: Biobase 283s Loading required package: BiocGenerics 284s 284s Attaching package: ‘BiocGenerics’ 284s 284s The following object is masked from ‘package:limma’: 284s 284s plotMA 284s 284s The following objects are masked from ‘package:stats’: 284s 284s IQR, mad, sd, var, xtabs 284s 284s The following objects are masked from ‘package:base’: 284s 284s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 284s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 284s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 284s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 284s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 284s table, tapply, union, unique, unsplit, which.max, which.min 284s 284s Welcome to Bioconductor 284s 284s Vignettes contain introductory material; view with 284s 'browseVignettes()'. To cite Bioconductor, see 284s 'citation("Biobase")', and for packages 'citation("pkgname")'. 284s 284s Loading required package: SummarizedExperiment 284s Loading required package: MatrixGenerics 284s Loading required package: matrixStats 284s 284s Attaching package: ‘matrixStats’ 284s 284s The following objects are masked from ‘package:Biobase’: 284s 284s anyMissing, rowMedians 284s 284s 284s Attaching package: ‘MatrixGenerics’ 284s 284s The following objects are masked from ‘package:matrixStats’: 284s 284s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 284s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 284s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 284s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 284s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 284s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 284s colWeightedMeans, colWeightedMedians, colWeightedSds, 284s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 284s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 284s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 284s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 284s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 284s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 284s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 284s rowWeightedSds, rowWeightedVars 284s 284s The following object is masked from ‘package:Biobase’: 284s 284s rowMedians 284s 284s Loading required package: GenomicRanges 284s Loading required package: stats4 284s Loading required package: S4Vectors 285s 285s Attaching package: ‘S4Vectors’ 285s 285s The following object is masked from ‘package:utils’: 285s 285s findMatches 285s 285s The following objects are masked from ‘package:base’: 285s 285s expand.grid, I, unname 285s 285s Loading required package: IRanges 285s Loading required package: GenomeInfoDb 289s Loading required package: DESeq2 290s Loading required package: AnnotationDbi 291s Loading required package: RColorBrewer 293s Loading required package: satuRn 293s Loading required package: sva 293s Loading required package: mgcv 293s Loading required package: nlme 293s 293s Attaching package: ‘nlme’ 293s 293s The following object is masked from ‘package:IRanges’: 293s 293s collapse 293s 293s This is mgcv 1.9-1. For overview type 'help("mgcv-package")'. 293s Loading required package: genefilter 293s 293s Attaching package: ‘genefilter’ 293s 293s The following objects are masked from ‘package:MatrixGenerics’: 293s 293s rowSds, rowVars 293s 293s The following objects are masked from ‘package:matrixStats’: 293s 293s rowSds, rowVars 293s 293s Loading required package: ggplot2 293s Loading required package: pfamAnalyzeR 293s Loading required package: readr 294s 294s Attaching package: ‘readr’ 294s 294s The following object is masked from ‘package:genefilter’: 294s 294s spec 294s 294s Loading required package: stringr 294s Loading required package: dplyr 294s 294s Attaching package: ‘dplyr’ 294s 294s The following object is masked from ‘package:nlme’: 294s 294s collapse 294s 294s The following object is masked from ‘package:AnnotationDbi’: 294s 294s select 294s 294s The following objects are masked from ‘package:GenomicRanges’: 294s 294s intersect, setdiff, union 294s 294s The following object is masked from ‘package:GenomeInfoDb’: 294s 294s intersect 294s 294s The following objects are masked from ‘package:IRanges’: 294s 294s collapse, desc, intersect, setdiff, slice, union 294s 294s The following objects are masked from ‘package:S4Vectors’: 294s 294s first, intersect, rename, setdiff, setequal, union 294s 294s The following object is masked from ‘package:matrixStats’: 294s 294s count 294s 294s The following object is masked from ‘package:Biobase’: 294s 294s combine 294s 294s The following objects are masked from ‘package:BiocGenerics’: 294s 294s combine, intersect, setdiff, union 294s 294s The following objects are masked from ‘package:stats’: 294s 294s filter, lag 294s 294s The following objects are masked from ‘package:base’: 294s 294s intersect, setdiff, setequal, union 294s 298s > 298s > 298s Other tests are currently unsupported! 298s They will be progressively added. 299s autopkgtest [13:59:30]: test pkg-r-autopkgtest: -----------------------] 300s autopkgtest [13:59:30]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 300s pkg-r-autopkgtest PASS 300s autopkgtest [13:59:31]: @@@@@@@@@@@@@@@@@@@@ summary 300s pkg-r-autopkgtest PASS 312s Creating nova instance adt-noble-arm64-r-bioc-isoformswitchanalyzer-20240316-135430-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...