0s autopkgtest [17:35:31]: starting date and time: 2024-03-16 17:35:31+0000 0s autopkgtest [17:35:31]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:35:31]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.2rts2qbc/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-iranges --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-12.secgroup --name adt-noble-arm64-r-bioc-iranges-20240316-173530-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 109s autopkgtest [17:37:20]: testbed dpkg architecture: arm64 110s autopkgtest [17:37:21]: testbed apt version: 2.7.12 110s autopkgtest [17:37:21]: @@@@@@@@@@@@@@@@@@@@ test bed setup 110s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 111s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 111s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 111s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 111s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 111s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 111s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 111s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 111s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 121s Fetched 9060 kB in 2s (4564 kB/s) 122s Reading package lists... 127s Reading package lists... 128s Building dependency tree... 128s Reading state information... 129s Calculating upgrade... 129s The following packages will be REMOVED: 129s libglib2.0-0 libssl3 129s The following NEW packages will be installed: 129s libglib2.0-0t64 libssl3t64 xdg-user-dirs 129s The following packages have been kept back: 129s curl 129s The following packages will be upgraded: 129s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 129s ubuntu-minimal ubuntu-standard 130s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 130s Need to get 4613 kB of archives. 130s After this operation, 211 kB of additional disk space will be used. 130s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 130s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 130s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 130s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 130s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 130s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 130s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 130s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 130s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 130s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 132s Fetched 4613 kB in 1s (5795 kB/s) 132s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 132s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 132s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 132s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 132s udisks2 depends on libglib2.0-0 (>= 2.77.0). 132s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 132s python3-gi depends on libglib2.0-0 (>= 2.77.0). 132s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 132s netplan.io depends on libglib2.0-0 (>= 2.70.0). 132s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 132s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 132s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 132s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 132s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 132s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 132s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 132s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 132s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 132s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 132s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 132s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 132s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 132s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 132s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 132s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 132s fwupd depends on libglib2.0-0 (>= 2.79.0). 132s bolt depends on libglib2.0-0 (>= 2.56.0). 132s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 133s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 133s Selecting previously unselected package libglib2.0-0t64:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 133s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 133s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 133s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 133s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 133s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 133s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 133s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 133s wget depends on libssl3 (>= 3.0.0). 133s u-boot-tools depends on libssl3 (>= 3.0.0). 133s tnftp depends on libssl3 (>= 3.0.0). 133s tcpdump depends on libssl3 (>= 3.0.0). 133s systemd-resolved depends on libssl3 (>= 3.0.0). 133s systemd depends on libssl3 (>= 3.0.0). 133s sudo depends on libssl3 (>= 3.0.0). 133s sbsigntool depends on libssl3 (>= 3.0.0). 133s rsync depends on libssl3 (>= 3.0.0). 133s python3-cryptography depends on libssl3 (>= 3.0.0). 133s openssh-server depends on libssl3 (>= 3.0.10). 133s openssh-client depends on libssl3 (>= 3.0.10). 133s mtd-utils depends on libssl3 (>= 3.0.0). 133s mokutil depends on libssl3 (>= 3.0.0). 133s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 133s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 133s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 133s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 133s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 133s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 133s libnvme1 depends on libssl3 (>= 3.0.0). 133s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 133s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 133s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 133s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 133s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 133s kmod depends on libssl3 (>= 3.0.0). 133s dhcpcd-base depends on libssl3 (>= 3.0.0). 133s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 133s 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 133s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 133s Selecting previously unselected package libssl3t64:arm64. 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 133s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 133s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 133s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 133s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 133s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 133s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 133s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 133s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 133s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 133s Unpacking ubuntu-minimal (1.536) over (1.535) ... 133s Selecting previously unselected package xdg-user-dirs. 133s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 133s Unpacking xdg-user-dirs (0.18-1) ... 133s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 133s Unpacking ubuntu-standard (1.536) over (1.535) ... 133s Setting up ubuntu-minimal (1.536) ... 133s Setting up xdg-user-dirs (0.18-1) ... 133s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 133s Setting up libtirpc-common (1.3.4+ds-1.1) ... 133s Setting up ubuntu-standard (1.536) ... 133s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 133s No schema files found: doing nothing. 133s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 133s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 133s Setting up openssl (3.0.13-0ubuntu1) ... 133s Setting up readline-common (8.2-3.1) ... 133s Processing triggers for man-db (2.12.0-3) ... 134s Processing triggers for install-info (7.1-3) ... 134s Processing triggers for libc-bin (2.39-0ubuntu2) ... 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 136s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 137s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 137s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 138s Reading package lists... 138s Reading package lists... 138s Building dependency tree... 138s Reading state information... 139s Calculating upgrade... 140s The following packages have been kept back: 140s curl 140s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 142s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 147s autopkgtest [17:37:58]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 147s autopkgtest [17:37:58]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-iranges 151s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-iranges 2.36.0-1 (dsc) [2159 B] 151s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-iranges 2.36.0-1 (tar) [481 kB] 151s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-iranges 2.36.0-1 (diff) [5204 B] 151s gpgv: Signature made Thu Nov 30 00:11:33 2023 UTC 151s gpgv: using RSA key 73471499CC60ED9EEE805946C5BD6C8F2295D502 151s gpgv: issuer "plessy@debian.org" 151s gpgv: Can't check signature: No public key 151s dpkg-source: warning: cannot verify inline signature for ./r-bioc-iranges_2.36.0-1.dsc: no acceptable signature found 151s autopkgtest [17:38:02]: testing package r-bioc-iranges version 2.36.0-1 152s autopkgtest [17:38:03]: build not needed 153s autopkgtest [17:38:04]: test pkg-r-autopkgtest: preparing testbed 154s Reading package lists... 155s Building dependency tree... 155s Reading state information... 155s Starting pkgProblemResolver with broken count: 0 155s Starting 2 pkgProblemResolver with broken count: 0 155s Done 156s The following additional packages will be installed: 156s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 156s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 156s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 156s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 156s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 156s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 156s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 156s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 156s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 156s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 156s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 156s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 156s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 156s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 156s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 156s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 156s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 156s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 156s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 156s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 156s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 156s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 156s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 156s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 156s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 156s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 156s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 156s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 156s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 156s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 156s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 156s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 156s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments 156s r-bioc-genomicfeatures r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest 156s r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 156s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 156s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 156s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 156s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 156s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 156s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 156s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 156s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 156s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 156s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 156s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 156s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix 156s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 156s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits 156s r-cran-progress r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs 156s r-cran-rcpp r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang 156s r-cran-rmarkdown r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 156s r-cran-snow r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys 156s r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 156s r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable 156s r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 156s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 156s xdg-utils zip zlib1g-dev 156s Suggested packages: 156s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 156s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 156s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 156s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 156s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 156s libboost-context1.83-dev libboost-contract1.83-dev 156s libboost-coroutine1.83-dev libboost-date-time1.83-dev 156s libboost-exception1.83-dev libboost-fiber1.83-dev 156s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 156s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 156s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 156s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 156s libboost-numpy1.83-dev libboost-program-options1.83-dev 156s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 156s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 156s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 156s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 156s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 156s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 156s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 156s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 156s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 156s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 156s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 156s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 156s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all r-cran-testthat 156s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 156s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 156s r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr 156s r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 156s r-bioc-delayedmatrixstats r-cran-r.utils r-bioc-edger r-bioc-ensembldb 156s r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub 156s r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 156s r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rstudioapi r-cran-rmysql 156s r-cran-lubridate r-cran-getopt r-cran-formattable r-cran-ggplot2 156s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 156s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 156s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 156s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 156s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 156s hintview texlive-latex-base-doc wp2latex 156s Recommended packages: 156s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 156s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 156s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 156s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 156s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 156s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 156s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 156s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 156s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 156s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr 156s r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick r-cran-reticulate 156s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 156s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 156s r-cran-future r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 156s r-cran-gh r-cran-rvest r-cran-data.table r-cran-mockr r-cran-formattable 156s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 156s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 156s x11-xserver-utils 157s The following packages will be REMOVED: 157s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 157s The following NEW packages will be installed: 157s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 157s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 157s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 157s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 157s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 157s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 157s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 157s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 157s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 157s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 157s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 157s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 157s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 157s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 157s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 157s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 157s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 157s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 157s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 157s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 157s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 157s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 157s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 157s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 157s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 157s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 157s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 157s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 157s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 157s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 157s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 157s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 157s r-bioc-biostrings r-bioc-delayedarray r-bioc-genomeinfodb 157s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 157s r-bioc-genomicranges r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 157s r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays 157s r-bioc-s4vectors r-bioc-sparsearray r-bioc-summarizedexperiment 157s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 157s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 157s r-cran-blob r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli 157s r-cran-codetools r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl 157s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis 157s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 157s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 157s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 157s r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite 157s r-cran-knitr r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle 157s r-cran-littler r-cran-magrittr r-cran-matrix r-cran-matrixstats 157s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 157s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 157s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 157s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 157s r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny r-cran-snow 157s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 157s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 157s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 157s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 157s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 157s zlib1g-dev 157s The following packages will be upgraded: 157s curl 157s 1 upgraded, 280 newly installed, 5 to remove and 0 not upgraded. 157s Need to get 416 MB/416 MB of archives. 157s After this operation, 1331 MB of additional disk space will be used. 157s Get:1 /tmp/autopkgtest.D5OhQw/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [780 B] 157s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 157s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 157s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 157s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 157s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 157s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 157s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 157s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 158s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 158s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 158s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 158s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 158s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 158s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 158s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 158s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 158s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 158s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 158s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 158s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 158s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 158s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 158s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 158s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 158s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 158s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 158s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 158s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 158s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 158s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 159s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 159s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 159s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 159s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 159s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 159s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 159s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 159s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 159s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 159s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 159s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 159s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 159s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 159s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 159s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 159s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 159s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 159s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 159s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 159s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 159s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 159s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 160s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 160s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 160s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 160s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 160s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 160s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 160s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 160s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 160s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 160s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 160s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 160s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 160s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 160s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 160s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 160s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 160s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 160s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 160s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 160s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 160s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 160s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 160s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 160s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 160s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 160s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 160s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 160s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 160s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 160s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 160s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 160s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 160s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 160s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 160s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 160s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 160s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 160s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 160s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 160s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 160s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 160s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 160s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 160s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 161s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 161s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 161s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 161s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 161s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 161s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 161s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 161s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 161s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 161s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 161s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 161s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 161s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 161s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 161s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 161s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 161s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 161s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 161s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 161s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 161s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 161s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 161s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 161s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 161s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 161s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 161s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 161s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 161s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 162s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 162s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 162s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 162s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 162s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 162s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 162s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 162s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 162s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 162s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 162s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 162s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 162s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 162s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 162s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 162s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 162s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 162s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 162s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 162s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 162s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 162s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 162s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 162s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 162s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 163s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 163s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 163s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 163s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 163s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 163s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 163s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 163s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 163s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 163s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 163s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 163s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 163s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 163s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 163s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 163s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 163s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 163s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 163s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 163s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 163s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 163s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 163s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 163s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 163s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 163s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 163s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 163s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 163s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 163s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 163s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 163s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 163s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 163s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 164s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 164s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 164s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 164s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 164s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 164s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 164s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 164s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 164s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 164s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 164s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 164s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 164s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 164s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 164s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 164s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 164s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 164s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 165s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 165s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 165s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 165s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 165s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 165s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 165s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 165s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 165s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 165s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 165s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 165s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 165s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 165s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 165s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 165s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 165s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 165s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 165s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 165s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 165s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 165s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 165s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 165s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 166s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 166s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 166s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 166s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 166s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 166s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 166s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 166s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 166s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 166s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 166s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 166s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 166s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 166s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 166s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 166s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 166s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 166s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 166s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 166s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 166s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 166s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 166s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 166s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 166s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 166s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 166s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 167s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 167s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 170s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 170s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 170s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 170s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 170s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 170s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 170s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 170s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 170s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 170s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 170s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 170s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 170s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 170s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 170s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 170s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 170s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 170s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 170s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 170s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 171s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 171s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 171s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 171s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 171s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 172s Preconfiguring packages ... 173s Fetched 416 MB in 14s (29.6 MB/s) 173s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 173s wget depends on libpsl5 (>= 0.16.0). 173s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 173s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 173s Removing libpsl5:arm64 (0.21.2-1build1) ... 173s Selecting previously unselected package libpsl5t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 173s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 173s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 173s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 173s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 173s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 173s Selecting previously unselected package libcurl4t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 173s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 173s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 173s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 173s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 173s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 173s Removing libpng16-16:arm64 (1.6.43-1) ... 173s Selecting previously unselected package libpng16-16t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 173s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 173s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 173s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 173s parted depends on libreadline8 (>= 6.0). 173s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 173s gpgsm depends on libreadline8 (>= 6.0). 173s gpgconf depends on libreadline8 (>= 6.0). 173s gpg depends on libreadline8 (>= 6.0). 173s gawk depends on libreadline8 (>= 6.0). 173s fdisk depends on libreadline8 (>= 6.0). 173s 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 173s Removing libreadline8:arm64 (8.2-3) ... 173s Selecting previously unselected package libreadline8t64:arm64. 173s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 173s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 173s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 173s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 173s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 173s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 173s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 174s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 174s lsof depends on libtirpc3 (>= 1.0.2). 174s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 174s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 174s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 174s iproute2 depends on libtirpc3 (>= 1.0.2). 174s 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 174s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 174s Selecting previously unselected package libtirpc3t64:arm64. 174s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 174s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 174s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 174s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 174s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 174s Selecting previously unselected package libc-dev-bin. 174s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 174s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 174s Selecting previously unselected package linux-libc-dev:arm64. 174s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 174s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 175s Selecting previously unselected package libcrypt-dev:arm64. 175s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 175s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 175s Selecting previously unselected package libtirpc-dev:arm64. 175s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 175s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 175s Selecting previously unselected package libnsl-dev:arm64. 175s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 175s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 175s Selecting previously unselected package rpcsvc-proto. 175s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 175s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 175s Selecting previously unselected package libc6-dev:arm64. 175s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 175s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 175s Selecting previously unselected package libisl23:arm64. 175s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 175s Unpacking libisl23:arm64 (0.26-3) ... 175s Selecting previously unselected package libmpc3:arm64. 175s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 175s Unpacking libmpc3:arm64 (1.3.1-1) ... 175s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 175s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 175s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 175s Selecting previously unselected package cpp-13. 176s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package cpp-aarch64-linux-gnu. 176s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package cpp. 176s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 176s Unpacking cpp (4:13.2.0-7ubuntu1) ... 176s Selecting previously unselected package libcc1-0:arm64. 176s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libgomp1:arm64. 176s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libitm1:arm64. 176s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libatomic1:arm64. 176s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libasan8:arm64. 176s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package liblsan0:arm64. 176s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libtsan2:arm64. 176s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libubsan1:arm64. 176s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libhwasan0:arm64. 176s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 176s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 176s Selecting previously unselected package libgcc-13-dev:arm64. 176s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 176s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 176s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 176s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package gcc-13. 177s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package gcc-aarch64-linux-gnu. 177s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package gcc. 177s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking gcc (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package libstdc++-13-dev:arm64. 177s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package g++-13-aarch64-linux-gnu. 177s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package g++-13. 177s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 177s Unpacking g++-13 (13.2.0-17ubuntu2) ... 177s Selecting previously unselected package g++-aarch64-linux-gnu. 177s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package g++. 177s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 177s Unpacking g++ (4:13.2.0-7ubuntu1) ... 177s Selecting previously unselected package build-essential. 177s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 177s Unpacking build-essential (12.10ubuntu1) ... 177s Selecting previously unselected package dctrl-tools. 178s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 178s Unpacking dctrl-tools (2.24-3build2) ... 178s Selecting previously unselected package fonts-dejavu-mono. 178s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 178s Unpacking fonts-dejavu-mono (2.37-8) ... 178s Selecting previously unselected package fonts-dejavu-core. 178s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 178s Unpacking fonts-dejavu-core (2.37-8) ... 178s Selecting previously unselected package fontconfig-config. 178s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 178s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 178s Selecting previously unselected package libfontconfig1:arm64. 178s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 178s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 178s Selecting previously unselected package fontconfig. 178s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 178s Unpacking fontconfig (2.15.0-1ubuntu1) ... 178s Selecting previously unselected package fonts-font-awesome. 178s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 178s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 178s Selecting previously unselected package fonts-glyphicons-halflings. 178s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 178s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 178s Selecting previously unselected package fonts-lmodern. 178s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 178s Unpacking fonts-lmodern (2.005-1) ... 179s Selecting previously unselected package fonts-mathjax. 179s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 179s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 179s Selecting previously unselected package libgfortran5:arm64. 179s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 179s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 179s Selecting previously unselected package libgfortran-13-dev:arm64. 179s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 179s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gfortran-13. 179s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 179s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 179s Selecting previously unselected package gfortran-aarch64-linux-gnu. 180s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package gfortran. 180s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 180s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 180s Selecting previously unselected package icu-devtools. 180s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 180s Unpacking icu-devtools (74.2-1ubuntu1) ... 180s Selecting previously unselected package javascript-common. 180s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 180s Unpacking javascript-common (11+nmu1) ... 180s Selecting previously unselected package libio-string-perl. 180s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 180s Unpacking libio-string-perl (1.08-4) ... 180s Selecting previously unselected package liblatex-tounicode-perl. 180s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 180s Unpacking liblatex-tounicode-perl (0.54-2) ... 180s Selecting previously unselected package libbibtex-parser-perl. 180s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 180s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 180s Selecting previously unselected package libblas3:arm64. 180s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 180s Unpacking libblas3:arm64 (3.12.0-3) ... 180s Selecting previously unselected package libblas-dev:arm64. 180s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 180s Unpacking libblas-dev:arm64 (3.12.0-3) ... 180s Selecting previously unselected package libboost1.83-dev:arm64. 180s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 180s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 182s Selecting previously unselected package libboost-dev:arm64. 182s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 182s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 182s Selecting previously unselected package libbz2-dev:arm64. 182s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 182s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 182s Selecting previously unselected package libpixman-1-0:arm64. 182s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 182s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 182s Selecting previously unselected package libxcb-render0:arm64. 182s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 182s Unpacking libxcb-render0:arm64 (1.15-1) ... 182s Selecting previously unselected package libxcb-shm0:arm64. 182s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 182s Unpacking libxcb-shm0:arm64 (1.15-1) ... 182s Selecting previously unselected package libxrender1:arm64. 182s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 182s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 182s Selecting previously unselected package libcairo2:arm64. 182s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 182s Unpacking libcairo2:arm64 (1.18.0-1) ... 182s Selecting previously unselected package libdatrie1:arm64. 182s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 182s Unpacking libdatrie1:arm64 (0.2.13-3) ... 182s Selecting previously unselected package libdeflate0:arm64. 182s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 182s Unpacking libdeflate0:arm64 (1.19-1) ... 182s Selecting previously unselected package libgraphite2-3:arm64. 182s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 182s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 182s Selecting previously unselected package libharfbuzz0b:arm64. 182s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 182s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 183s Selecting previously unselected package x11-common. 183s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 183s Unpacking x11-common (1:7.7+23ubuntu2) ... 183s Selecting previously unselected package libice6:arm64. 183s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 183s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 183s Selecting previously unselected package libicu-dev:arm64. 183s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 183s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 183s Selecting previously unselected package libjpeg-turbo8:arm64. 183s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 183s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 183s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 183s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 183s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 183s Selecting previously unselected package libjpeg8:arm64. 183s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 183s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 183s Selecting previously unselected package libjpeg8-dev:arm64. 183s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 183s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 183s Selecting previously unselected package libjpeg-dev:arm64. 183s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 183s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 183s Selecting previously unselected package libjs-bootstrap. 183s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 183s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 183s Selecting previously unselected package libjs-popper.js. 183s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 183s Unpacking libjs-popper.js (1.16.1+ds-6) ... 183s Selecting previously unselected package libjs-bootstrap4. 183s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 183s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 183s Selecting previously unselected package libjs-d3. 183s Preparing to unpack .../080-libjs-d3_3.5.17-4_all.deb ... 183s Unpacking libjs-d3 (3.5.17-4) ... 183s Selecting previously unselected package libjs-es5-shim. 183s Preparing to unpack .../081-libjs-es5-shim_4.6.7-2_all.deb ... 183s Unpacking libjs-es5-shim (4.6.7-2) ... 183s Selecting previously unselected package libjs-highlight.js. 183s Preparing to unpack .../082-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 183s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 184s Selecting previously unselected package libjs-jquery. 184s Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 184s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 184s Selecting previously unselected package libjs-jquery-datatables. 184s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 184s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 184s Selecting previously unselected package libjs-sifter.js. 184s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 184s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 184s Selecting previously unselected package libjs-microplugin.js. 184s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 184s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 184s Selecting previously unselected package libjs-jquery-selectize.js. 184s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 184s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 184s Selecting previously unselected package libjs-jquery-ui. 184s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 184s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 184s Selecting previously unselected package libjs-json. 184s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 184s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 184s Selecting previously unselected package libjs-lunr. 184s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 184s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 184s Selecting previously unselected package libjs-prettify. 184s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 184s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 184s Selecting previously unselected package libkpathsea6:arm64. 184s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 184s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 184s Selecting previously unselected package liblapack3:arm64. 184s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 184s Unpacking liblapack3:arm64 (3.12.0-3) ... 184s Selecting previously unselected package liblapack-dev:arm64. 184s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 184s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 185s Selecting previously unselected package liblerc4:arm64. 185s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 185s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 185s Selecting previously unselected package liblua5.4-0:arm64. 185s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 185s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 185s Selecting previously unselected package libncurses-dev:arm64. 185s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 185s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 185s Selecting previously unselected package libthai-data. 185s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 185s Unpacking libthai-data (0.1.29-2) ... 185s Selecting previously unselected package libthai0:arm64. 185s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 185s Unpacking libthai0:arm64 (0.1.29-2) ... 185s Selecting previously unselected package libpango-1.0-0:arm64. 185s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpangoft2-1.0-0:arm64. 185s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpangocairo-1.0-0:arm64. 185s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 185s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 185s Selecting previously unselected package libpaper1:arm64. 185s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 185s Unpacking libpaper1:arm64 (1.1.29) ... 185s Selecting previously unselected package libpaper-utils. 185s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 185s Unpacking libpaper-utils (1.1.29) ... 185s Selecting previously unselected package libpcre2-16-0:arm64. 185s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 185s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 185s Selecting previously unselected package libpcre2-32-0:arm64. 185s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 185s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 185s Selecting previously unselected package libpcre2-posix3:arm64. 185s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 185s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 185s Selecting previously unselected package libpcre2-dev:arm64. 186s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 186s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 186s Selecting previously unselected package libpkgconf3:arm64. 186s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 186s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 186s Selecting previously unselected package zlib1g-dev:arm64. 186s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 186s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 186s Selecting previously unselected package libpng-dev:arm64. 186s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 186s Unpacking libpng-dev:arm64 (1.6.43-3) ... 186s Selecting previously unselected package libpotrace0:arm64. 186s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 186s Unpacking libpotrace0:arm64 (1.16-2) ... 186s Selecting previously unselected package libptexenc1:arm64. 186s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 186s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 186s Selecting previously unselected package libreadline-dev:arm64. 186s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 186s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 186s Selecting previously unselected package libsharpyuv0:arm64. 186s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 186s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 186s Selecting previously unselected package libsm6:arm64. 186s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 186s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 186s Selecting previously unselected package libsynctex2:arm64. 186s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 186s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 186s Selecting previously unselected package libtcl8.6:arm64. 186s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 186s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 186s Selecting previously unselected package libteckit0:arm64. 186s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 186s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 186s Selecting previously unselected package libtexlua53-5:arm64. 186s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 186s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 186s Selecting previously unselected package libjbig0:arm64. 186s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 186s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 186s Selecting previously unselected package libwebp7:arm64. 186s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 186s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 186s Selecting previously unselected package libtiff6:arm64. 186s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 186s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 186s Selecting previously unselected package libxft2:arm64. 187s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 187s Unpacking libxft2:arm64 (2.3.6-1) ... 187s Selecting previously unselected package libxss1:arm64. 187s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 187s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 187s Selecting previously unselected package libtk8.6:arm64. 187s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 187s Unpacking libtk8.6:arm64 (8.6.13-2) ... 187s Selecting previously unselected package libxt6t64:arm64. 187s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 187s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 187s Selecting previously unselected package libxmu6:arm64. 187s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 187s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 187s Selecting previously unselected package libxpm4:arm64. 187s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 187s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 187s Selecting previously unselected package libxaw7:arm64. 187s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 187s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 187s Selecting previously unselected package libxi6:arm64. 187s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 187s Unpacking libxi6:arm64 (2:1.8.1-1) ... 187s Selecting previously unselected package libzzip-0-13:arm64. 187s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 187s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 187s Selecting previously unselected package node-bootstrap-sass. 187s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 187s Unpacking node-bootstrap-sass (3.4.3-2) ... 187s Selecting previously unselected package node-html5shiv. 187s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 187s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 187s Selecting previously unselected package node-normalize.css. 187s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 187s Unpacking node-normalize.css (8.0.1-5) ... 187s Selecting previously unselected package pandoc-data. 187s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 187s Unpacking pandoc-data (3.1.3-1) ... 187s Selecting previously unselected package pandoc. 187s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 187s Unpacking pandoc (3.1.3+ds-2) ... 188s Selecting previously unselected package pkgconf-bin. 188s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 188s Unpacking pkgconf-bin (1.8.1-2) ... 189s Selecting previously unselected package pkgconf:arm64. 189s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 189s Unpacking pkgconf:arm64 (1.8.1-2) ... 189s Selecting previously unselected package pkg-config:arm64. 189s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 189s Unpacking pkg-config:arm64 (1.8.1-2) ... 189s Selecting previously unselected package zip. 189s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 189s Unpacking zip (3.0-13) ... 189s Selecting previously unselected package unzip. 189s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 189s Unpacking unzip (6.0-28ubuntu3) ... 189s Selecting previously unselected package xdg-utils. 189s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 189s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 189s Selecting previously unselected package r-base-core. 189s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 189s Unpacking r-base-core (4.3.3-2build1) ... 190s Selecting previously unselected package liblzma-dev:arm64. 190s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 190s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 190s Selecting previously unselected package r-base-dev. 190s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 190s Unpacking r-base-dev (4.3.3-2build1) ... 190s Selecting previously unselected package pkg-r-autopkgtest. 190s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 190s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 190s Selecting previously unselected package r-bioc-biocgenerics. 190s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 190s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 190s Selecting previously unselected package r-bioc-biobase. 191s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 191s Unpacking r-bioc-biobase (2.62.0-1) ... 191s Selecting previously unselected package r-bioc-s4vectors. 191s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 191s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 191s Selecting previously unselected package r-bioc-iranges. 191s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 191s Unpacking r-bioc-iranges (2.36.0-1) ... 191s Selecting previously unselected package r-cran-dbi. 191s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 191s Unpacking r-cran-dbi (1.2.2-1) ... 191s Selecting previously unselected package r-cran-bit. 191s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 191s Unpacking r-cran-bit (4.0.5-1) ... 191s Selecting previously unselected package r-cran-bit64. 191s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 191s Unpacking r-cran-bit64 (4.0.5-1) ... 191s Selecting previously unselected package r-cran-rlang. 191s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 191s Unpacking r-cran-rlang (1.1.3-1) ... 192s Selecting previously unselected package r-cran-cli. 192s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 192s Unpacking r-cran-cli (3.6.2-1) ... 192s Selecting previously unselected package r-cran-glue. 192s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 192s Unpacking r-cran-glue (1.7.0-1) ... 192s Selecting previously unselected package r-cran-lifecycle. 192s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 192s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 192s Selecting previously unselected package r-cran-vctrs. 193s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 193s Unpacking r-cran-vctrs (0.6.5-1) ... 193s Selecting previously unselected package r-cran-blob. 193s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 193s Unpacking r-cran-blob (1.2.4-1) ... 193s Selecting previously unselected package r-cran-fastmap. 193s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 193s Unpacking r-cran-fastmap (1.1.1-1) ... 193s Selecting previously unselected package r-cran-cachem. 193s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 193s Unpacking r-cran-cachem (1.0.8-1) ... 193s Selecting previously unselected package r-cran-memoise. 193s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 193s Unpacking r-cran-memoise (2.0.1-1) ... 193s Selecting previously unselected package r-cran-pkgconfig. 193s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 193s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 193s Selecting previously unselected package r-cran-plogr. 193s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 193s Unpacking r-cran-plogr (0.2.0-3build1) ... 194s Selecting previously unselected package r-cran-cpp11. 194s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 194s Unpacking r-cran-cpp11 (0.4.7-1) ... 194s Selecting previously unselected package r-cran-rsqlite. 194s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 194s Unpacking r-cran-rsqlite (2.3.4-1) ... 194s Selecting previously unselected package r-cran-curl. 194s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 194s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 194s Selecting previously unselected package r-cran-jsonlite. 194s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 194s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 194s Selecting previously unselected package r-cran-mime. 194s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 194s Unpacking r-cran-mime (0.12-1) ... 194s Selecting previously unselected package r-cran-sys. 194s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 194s Unpacking r-cran-sys (3.4.2-1) ... 194s Selecting previously unselected package r-cran-askpass. 194s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 194s Unpacking r-cran-askpass (1.2.0-1) ... 194s Selecting previously unselected package r-cran-openssl. 194s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 194s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 194s Selecting previously unselected package r-cran-r6. 194s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 194s Unpacking r-cran-r6 (2.5.1-1) ... 194s Selecting previously unselected package r-cran-httr. 194s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 194s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 194s Selecting previously unselected package r-cran-png. 194s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 194s Unpacking r-cran-png (0.1-8-1) ... 194s Selecting previously unselected package r-bioc-zlibbioc. 194s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 194s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 194s Selecting previously unselected package r-bioc-xvector. 194s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 194s Unpacking r-bioc-xvector (0.42.0-1) ... 194s Selecting previously unselected package r-cran-bitops. 195s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 195s Unpacking r-cran-bitops (1.0-7-1) ... 195s Selecting previously unselected package r-cran-rcurl. 195s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 195s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 195s Selecting previously unselected package r-bioc-genomeinfodbdata. 195s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 195s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 195s Selecting previously unselected package r-bioc-genomeinfodb. 195s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 195s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 195s Selecting previously unselected package r-cran-crayon. 195s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 195s Unpacking r-cran-crayon (1.5.2-1) ... 195s Selecting previously unselected package r-bioc-biostrings. 195s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 195s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 195s Selecting previously unselected package r-bioc-keggrest. 195s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 195s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 195s Selecting previously unselected package r-bioc-annotationdbi. 195s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 195s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 195s Selecting previously unselected package r-cran-generics. 195s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 195s Unpacking r-cran-generics (0.1.3-1) ... 195s Selecting previously unselected package r-cran-magrittr. 195s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 195s Unpacking r-cran-magrittr (2.0.3-1) ... 195s Selecting previously unselected package r-cran-fansi. 195s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_arm64.deb ... 195s Unpacking r-cran-fansi (1.0.5-1) ... 195s Selecting previously unselected package r-cran-utf8. 195s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ... 195s Unpacking r-cran-utf8 (1.2.4-1) ... 195s Selecting previously unselected package r-cran-pillar. 195s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 195s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-tibble. 196s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 196s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 196s Selecting previously unselected package r-cran-withr. 196s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 196s Unpacking r-cran-withr (2.5.0-1) ... 196s Selecting previously unselected package r-cran-tidyselect. 196s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 196s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-dplyr. 196s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ... 196s Unpacking r-cran-dplyr (1.1.4-1) ... 196s Selecting previously unselected package r-cran-purrr. 196s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ... 196s Unpacking r-cran-purrr (1.0.2-1) ... 196s Selecting previously unselected package r-cran-stringi. 196s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_arm64.deb ... 196s Unpacking r-cran-stringi (1.8.3-1) ... 196s Selecting previously unselected package r-cran-stringr. 196s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 196s Unpacking r-cran-stringr (1.5.1-1) ... 196s Selecting previously unselected package r-cran-tidyr. 196s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 196s Unpacking r-cran-tidyr (1.3.1-1) ... 196s Selecting previously unselected package r-cran-dbplyr. 196s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 196s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 196s Selecting previously unselected package r-cran-filelock. 196s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 196s Unpacking r-cran-filelock (1.0.3-1) ... 196s Selecting previously unselected package r-bioc-biocfilecache. 196s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 196s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 196s Selecting previously unselected package r-bioc-biocio. 197s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 197s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 197s Selecting previously unselected package r-cran-formatr. 197s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 197s Unpacking r-cran-formatr (1.14-1) ... 197s Selecting previously unselected package r-cran-lambda.r. 197s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 197s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 197s Selecting previously unselected package r-cran-futile.options. 197s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 197s Unpacking r-cran-futile.options (1.0.1-3build1) ... 197s Selecting previously unselected package r-cran-futile.logger. 197s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 197s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 197s Selecting previously unselected package r-cran-snow. 197s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 197s Unpacking r-cran-snow (1:0.4.4-2) ... 197s Selecting previously unselected package r-cran-codetools. 197s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 197s Unpacking r-cran-codetools (0.2-19-1) ... 197s Selecting previously unselected package r-cran-bh. 197s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 197s Unpacking r-cran-bh (1.84.0-1) ... 197s Selecting previously unselected package r-bioc-biocparallel. 197s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 197s Unpacking r-bioc-biocparallel (1.36.0-1) ... 197s Selecting previously unselected package r-cran-base64enc. 197s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_arm64.deb ... 197s Unpacking r-cran-base64enc (0.1-3-3) ... 198s Selecting previously unselected package r-cran-digest. 198s Preparing to unpack .../213-r-cran-digest_0.6.34-1_arm64.deb ... 198s Unpacking r-cran-digest (0.6.34-1) ... 198s Selecting previously unselected package r-cran-ellipsis. 198s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_arm64.deb ... 198s Unpacking r-cran-ellipsis (0.3.2-2) ... 198s Selecting previously unselected package r-cran-htmltools. 198s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_arm64.deb ... 198s Unpacking r-cran-htmltools (0.5.7-1) ... 198s Selecting previously unselected package r-cran-evaluate. 198s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 198s Unpacking r-cran-evaluate (0.23-1) ... 198s Selecting previously unselected package r-cran-xfun. 198s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 198s Unpacking r-cran-xfun (0.41+dfsg-1) ... 198s Selecting previously unselected package r-cran-highr. 198s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 198s Unpacking r-cran-highr (0.10+dfsg-1) ... 198s Selecting previously unselected package r-cran-yaml. 198s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_arm64.deb ... 198s Unpacking r-cran-yaml (2.3.8-1) ... 198s Selecting previously unselected package libjs-mathjax. 198s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 198s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 199s Selecting previously unselected package r-cran-knitr. 199s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 199s Unpacking r-cran-knitr (1.45+dfsg-1) ... 199s Selecting previously unselected package r-cran-jquerylib. 199s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 199s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 199s Selecting previously unselected package r-cran-fs. 199s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 199s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 199s Selecting previously unselected package r-cran-rappdirs. 199s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_arm64.deb ... 199s Unpacking r-cran-rappdirs (0.3.3-1) ... 199s Selecting previously unselected package r-cran-sass. 199s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 199s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 199s Selecting previously unselected package r-cran-bslib. 199s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 199s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 199s Selecting previously unselected package r-cran-fontawesome. 199s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 199s Unpacking r-cran-fontawesome (0.5.2-1) ... 199s Selecting previously unselected package r-cran-tinytex. 199s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 199s Unpacking r-cran-tinytex (0.49-1) ... 200s Selecting previously unselected package libjs-modernizr. 200s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 200s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 200s Selecting previously unselected package r-cran-littler. 200s Preparing to unpack .../230-r-cran-littler_0.3.19-1_arm64.deb ... 200s Unpacking r-cran-littler (0.3.19-1) ... 200s Selecting previously unselected package r-cran-pkgkitten. 200s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 200s Unpacking r-cran-pkgkitten (0.2.3-1) ... 200s Selecting previously unselected package r-cran-rcpp. 200s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 200s Unpacking r-cran-rcpp (1.0.12-1) ... 200s Selecting previously unselected package r-cran-later. 200s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 200s Unpacking r-cran-later (1.3.2+dfsg-1) ... 200s Selecting previously unselected package r-cran-promises. 200s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 200s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 200s Selecting previously unselected package r-cran-httpuv. 200s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 200s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 200s Selecting previously unselected package r-cran-xtable. 200s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 200s Unpacking r-cran-xtable (1:1.8-4-2) ... 200s Selecting previously unselected package r-cran-sourcetools. 200s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 200s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 200s Selecting previously unselected package r-cran-commonmark. 200s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 200s Unpacking r-cran-commonmark (1.9.1-1) ... 200s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 200s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 200s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 200s Selecting previously unselected package r-cran-shiny. 200s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 200s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 200s Selecting previously unselected package r-cran-rmarkdown. 200s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 200s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 200s Selecting previously unselected package r-cran-bookdown. 200s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 200s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 200s Selecting previously unselected package r-cran-biocmanager. 200s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 200s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 201s Selecting previously unselected package tex-common. 201s Preparing to unpack .../244-tex-common_6.18_all.deb ... 201s Unpacking tex-common (6.18) ... 201s Selecting previously unselected package t1utils. 201s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 201s Unpacking t1utils (1.41-4build2) ... 201s Selecting previously unselected package texlive-binaries. 201s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 201s Unpacking texlive-binaries (2023.20230311.66589-9) ... 201s Selecting previously unselected package texlive-base. 201s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 201s Unpacking texlive-base (2023.20240207-1) ... 202s Selecting previously unselected package texlive-latex-base. 202s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 202s Unpacking texlive-latex-base (2023.20240207-1) ... 202s Selecting previously unselected package texlive-bibtex-extra. 202s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 202s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 205s Selecting previously unselected package r-bioc-biocstyle. 205s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 205s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 205s Selecting previously unselected package r-cran-xml. 205s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 205s Unpacking r-cran-xml (3.99-0.16.1-1) ... 206s Selecting previously unselected package r-cran-hms. 206s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 206s Unpacking r-cran-hms (1.1.3-1) ... 206s Selecting previously unselected package r-cran-prettyunits. 206s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 206s Unpacking r-cran-prettyunits (1.2.0-1) ... 206s Selecting previously unselected package r-cran-progress. 206s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 206s Unpacking r-cran-progress (1.2.3-1) ... 206s Selecting previously unselected package r-cran-xml2. 207s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 207s Unpacking r-cran-xml2 (1.3.6-1) ... 207s Selecting previously unselected package r-bioc-biomart. 207s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 207s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 207s Selecting previously unselected package r-cran-lattice. 207s Preparing to unpack .../257-r-cran-lattice_0.22-5-1_arm64.deb ... 207s Unpacking r-cran-lattice (0.22-5-1) ... 207s Selecting previously unselected package r-cran-matrix. 208s Preparing to unpack .../258-r-cran-matrix_1.6-5-1_arm64.deb ... 208s Unpacking r-cran-matrix (1.6-5-1) ... 208s Selecting previously unselected package r-cran-matrixstats. 208s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 208s Unpacking r-cran-matrixstats (1.2.0-1) ... 208s Selecting previously unselected package r-bioc-matrixgenerics. 209s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 209s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 209s Selecting previously unselected package r-cran-abind. 209s Preparing to unpack .../261-r-cran-abind_1.4-5-2_all.deb ... 209s Unpacking r-cran-abind (1.4-5-2) ... 209s Selecting previously unselected package r-bioc-s4arrays. 209s Preparing to unpack .../262-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-sparsearray. 209s Preparing to unpack .../263-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 209s Selecting previously unselected package r-bioc-delayedarray. 209s Preparing to unpack .../264-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-genomicranges. 209s Preparing to unpack .../265-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-summarizedexperiment. 209s Preparing to unpack .../266-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 209s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rhtslib. 209s Preparing to unpack .../267-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 209s Selecting previously unselected package r-bioc-rsamtools. 209s Preparing to unpack .../268-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 209s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-genomicalignments. 210s Preparing to unpack .../269-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 210s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 210s Selecting previously unselected package r-cran-rjson. 210s Preparing to unpack .../270-r-cran-rjson_0.2.21-1_arm64.deb ... 210s Unpacking r-cran-rjson (0.2.21-1) ... 210s Selecting previously unselected package r-cran-restfulr. 210s Preparing to unpack .../271-r-cran-restfulr_0.0.15-1_arm64.deb ... 210s Unpacking r-cran-restfulr (0.0.15-1) ... 210s Selecting previously unselected package r-bioc-rtracklayer. 210s Preparing to unpack .../272-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 210s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 210s Selecting previously unselected package r-bioc-genomicfeatures. 210s Preparing to unpack .../273-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 210s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 210s Selecting previously unselected package r-cran-runit. 210s Preparing to unpack .../274-r-cran-runit_0.4.32-3_all.deb ... 210s Unpacking r-cran-runit (0.4.32-3) ... 210s Selecting previously unselected package autopkgtest-satdep. 210s Preparing to unpack .../275-1-autopkgtest-satdep.deb ... 210s Unpacking autopkgtest-satdep (0) ... 210s Setting up libjs-json (0~20221030+~1.0.8-1) ... 210s Setting up javascript-common (11+nmu1) ... 210s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 210s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 210s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 210s Setting up libpaper1:arm64 (1.1.29) ... 211s 211s Creating config file /etc/papersize with new version 211s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 211s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 211s Setting up libxpm4:arm64 (1:3.5.17-1) ... 211s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 211s Setting up libxi6:arm64 (2:1.8.1-1) ... 211s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 211s Setting up libdatrie1:arm64 (0.2.13-3) ... 211s Setting up libjs-popper.js (1.16.1+ds-6) ... 211s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 211s Setting up libxcb-render0:arm64 (1.15-1) ... 211s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 211s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 211s Setting up libjs-lunr (2.3.9~dfsg-2) ... 211s Setting up unzip (6.0-28ubuntu3) ... 211s Setting up liblatex-tounicode-perl (0.54-2) ... 211s Setting up x11-common (1:7.7+23ubuntu2) ... 211s Setting up node-html5shiv (3.7.3+dfsg-5) ... 211s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 211s Setting up libdeflate0:arm64 (1.19-1) ... 212s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 212s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 212s Setting up libxcb-shm0:arm64 (1.15-1) ... 212s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 212s Setting up libpaper-utils (1.1.29) ... 212s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libjs-modernizr (2.6.2+ds1-5) ... 212s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 212s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 212s Setting up libjs-es5-shim (4.6.7-2) ... 212s Setting up tex-common (6.18) ... 212s update-language: texlive-base not installed and configured, doing nothing! 212s Setting up libio-string-perl (1.08-4) ... 212s Setting up zip (3.0-13) ... 212s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 212s Setting up libblas3:arm64 (3.12.0-3) ... 212s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 212s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 212s Setting up libpkgconf3:arm64 (1.8.1-2) ... 212s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 212s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 212s Setting up t1utils (1.41-4build2) ... 212s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 212s Setting up libjs-d3 (3.5.17-4) ... 212s Setting up fonts-dejavu-mono (2.37-8) ... 212s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 212s Setting up libmpc3:arm64 (1.3.1-1) ... 212s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 212s Setting up icu-devtools (74.2-1ubuntu1) ... 212s Setting up fonts-dejavu-core (2.37-8) ... 212s Setting up pkgconf-bin (1.8.1-2) ... 212s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 212s Setting up libkpathsea6:arm64 (2023.20230311.66589-9) ... 212s Setting up libgfortran5:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libwebp7:arm64 (1.3.2-0.4) ... 212s Setting up libreadline8t64:arm64 (8.2-3.1) ... 212s Setting up liblzma-dev:arm64 (5.4.5-0.3) ... 212s Setting up libubsan1:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 212s Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... 212s Setting up libnsl-dev:arm64 (1.3.0-3) ... 212s Setting up libhwasan0:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... 212s Setting up libasan8:arm64 (14-20240303-1ubuntu1) ... 212s Setting up fonts-lmodern (2.005-1) ... 212s Setting up liblua5.4-0:arm64 (5.4.6-3) ... 212s Setting up libharfbuzz0b:arm64 (8.3.0-2) ... 212s Setting up libthai-data (0.1.29-2) ... 212s Setting up node-bootstrap-sass (3.4.3-2) ... 212s Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... 212s Setting up libxss1:arm64 (1:1.2.3-1build2) ... 212s Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... 212s Setting up pandoc-data (3.1.3-1) ... 212s Setting up libtsan2:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 212s Setting up libisl23:arm64 (0.26-3) ... 212s Setting up libc-dev-bin (2.39-0ubuntu2) ... 212s Setting up node-normalize.css (8.0.1-5) ... 212s Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 212s Setting up xdg-utils (1.1.3-4.1ubuntu3) ... 212s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 212s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 212s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libblas-dev:arm64 (3.12.0-3) ... 212s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 212s Setting up dctrl-tools (2.24-3build2) ... 212s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 212s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 212s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 212s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 212s Setting up libpotrace0:arm64 (1.16-2) ... 212s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 212s Setting up libice6:arm64 (2:1.0.10-1build2) ... 212s Setting up liblapack3:arm64 (3.12.0-3) ... 212s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 212s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 212s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 212s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 212s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 212s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 212s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 212s Setting up pkgconf:arm64 (1.8.1-2) ... 212s Setting up libthai0:arm64 (0.1.29-2) ... 212s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 212s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 212s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 212s Setting up pandoc (3.1.3+ds-2) ... 212s Setting up liblapack-dev:arm64 (3.12.0-3) ... 212s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 212s Setting up pkg-config:arm64 (1.8.1-2) ... 212s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 212s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 212s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 212s Setting up curl (8.5.0-2ubuntu7) ... 212s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 212s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 212s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 212s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 212s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 212s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 212s Setting up fontconfig (2.15.0-1ubuntu1) ... 215s Regenerating fonts cache... done. 215s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 215s Setting up libxft2:arm64 (2.3.6-1) ... 215s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 215s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 215s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 215s Setting up cpp-13 (13.2.0-17ubuntu2) ... 215s Setting up libtk8.6:arm64 (8.6.13-2) ... 215s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 215s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 215s Setting up libreadline-dev:arm64 (8.2-3.1) ... 215s Setting up libcairo2:arm64 (1.18.0-1) ... 215s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 215s Setting up gcc-13 (13.2.0-17ubuntu2) ... 215s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 215s Setting up cpp (4:13.2.0-7ubuntu1) ... 215s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 215s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 215s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 215s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 215s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 215s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 215s Setting up g++-13 (13.2.0-17ubuntu2) ... 215s Setting up libxmu6:arm64 (2:1.1.3-3) ... 215s Setting up libpng-dev:arm64 (1.6.43-3) ... 215s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 215s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 215s Setting up libxaw7:arm64 (2:1.0.14-1) ... 215s Setting up gcc (4:13.2.0-7ubuntu1) ... 215s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 215s Setting up r-base-core (4.3.3-2build1) ... 215s 215s Creating config file /etc/R/Renviron with new version 215s Setting up r-cran-crayon (1.5.2-1) ... 215s Setting up r-cran-sourcetools (0.1.7-1-1) ... 215s Setting up r-cran-futile.options (1.0.1-3build1) ... 215s Setting up r-cran-lattice (0.22-5-1) ... 215s Setting up r-cran-formatr (1.14-1) ... 215s Setting up r-cran-xml (3.99-0.16.1-1) ... 215s Setting up texlive-binaries (2023.20230311.66589-9) ... 215s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 215s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 216s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 216s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 216s Setting up r-cran-commonmark (1.9.1-1) ... 216s Setting up r-cran-r6 (2.5.1-1) ... 216s Setting up r-cran-pkgkitten (0.2.3-1) ... 216s Setting up texlive-base (2023.20240207-1) ... 218s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 218s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 218s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 219s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 219s Setting up r-cran-magrittr (2.0.3-1) ... 219s Setting up r-cran-rappdirs (0.3.3-1) ... 219s Setting up r-cran-filelock (1.0.3-1) ... 219s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 220s Setting up r-cran-littler (0.3.19-1) ... 220s Setting up r-cran-bh (1.84.0-1) ... 220s Setting up r-cran-fs (1.6.3+dfsg-1) ... 220s Setting up r-cran-rcpp (1.0.12-1) ... 220s Setting up r-cran-curl (5.2.0+dfsg-1) ... 220s Setting up r-cran-codetools (0.2-19-1) ... 220s Setting up r-bioc-biocgenerics (0.48.1-2) ... 220s Setting up r-cran-rlang (1.1.3-1) ... 220s Setting up r-cran-matrixstats (1.2.0-1) ... 220s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 220s Setting up r-cran-xfun (0.41+dfsg-1) ... 220s Setting up r-cran-sys (3.4.2-1) ... 220s Setting up r-cran-plogr (0.2.0-3build1) ... 220s Setting up r-cran-withr (2.5.0-1) ... 220s Setting up r-cran-mime (0.12-1) ... 220s Setting up r-cran-generics (0.1.3-1) ... 220s Setting up r-cran-base64enc (0.1-3-3) ... 220s Setting up r-cran-abind (1.4-5-2) ... 220s Setting up r-cran-digest (0.6.34-1) ... 220s Setting up r-cran-yaml (2.3.8-1) ... 220s Setting up r-cran-lambda.r (1.2.4-2build1) ... 220s Setting up r-cran-evaluate (0.23-1) ... 220s Setting up r-cran-dbi (1.2.2-1) ... 220s Setting up r-cran-highr (0.10+dfsg-1) ... 220s Setting up r-cran-prettyunits (1.2.0-1) ... 220s Setting up r-cran-fansi (1.0.5-1) ... 220s Setting up r-cran-snow (1:0.4.4-2) ... 220s Setting up r-cran-glue (1.7.0-1) ... 220s Setting up r-cran-bit (4.0.5-1) ... 220s Setting up r-cran-xtable (1:1.8-4-2) ... 220s Setting up r-cran-cli (3.6.2-1) ... 220s Setting up gfortran (4:13.2.0-7ubuntu1) ... 220s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 220s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 220s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 220s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 220s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 220s Setting up r-cran-bitops (1.0-7-1) ... 220s Setting up r-cran-bit64 (4.0.5-1) ... 220s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 220s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 220s Setting up r-cran-askpass (1.2.0-1) ... 220s Setting up r-cran-fastmap (1.1.1-1) ... 220s Setting up r-cran-png (0.1-8-1) ... 220s Setting up r-bioc-biobase (2.62.0-1) ... 220s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 220s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 220s Setting up r-cran-utf8 (1.2.4-1) ... 220s Setting up r-cran-stringi (1.8.3-1) ... 220s Setting up texlive-latex-base (2023.20240207-1) ... 220s Setting up r-cran-cpp11 (0.4.7-1) ... 220s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 220s Setting up r-cran-runit (0.4.32-3) ... 220s Setting up r-cran-futile.logger (1.4.3-4build1) ... 220s Setting up r-cran-later (1.3.2+dfsg-1) ... 220s Setting up r-cran-matrix (1.6-5-1) ... 220s Setting up r-cran-tinytex (0.49-1) ... 220s Setting up r-cran-knitr (1.45+dfsg-1) ... 220s Setting up g++ (4:13.2.0-7ubuntu1) ... 220s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 220s Setting up r-cran-cachem (1.0.8-1) ... 220s Setting up build-essential (12.10ubuntu1) ... 220s Setting up r-bioc-iranges (2.36.0-1) ... 220s Setting up r-cran-rjson (0.2.21-1) ... 220s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 220s Setting up r-cran-restfulr (0.0.15-1) ... 220s Setting up r-cran-vctrs (0.6.5-1) ... 220s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 220s Setting up r-cran-ellipsis (0.3.2-2) ... 220s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 220s Setting up r-base-dev (4.3.3-2build1) ... 220s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 220s Setting up r-cran-stringr (1.5.1-1) ... 220s Setting up r-bioc-biocparallel (1.36.0-1) ... 220s Setting up r-bioc-rhtslib (2.4.1+dfsg-1) ... 220s Setting up r-cran-xml2 (1.3.6-1) ... 220s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 220s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 220s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 220s Setting up texlive-bibtex-extra (2023.20240207-1) ... 220s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 220s Setting up r-cran-httr (1.4.7+dfsg-1) ... 220s Setting up r-cran-hms (1.1.3-1) ... 220s Setting up r-cran-memoise (2.0.1-1) ... 220s Setting up r-cran-promises (1.2.1+dfsg-1) ... 220s Setting up r-cran-purrr (1.0.2-1) ... 220s Setting up r-cran-blob (1.2.4-1) ... 220s Setting up r-cran-htmltools (0.5.7-1) ... 220s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 220s Setting up r-bioc-xvector (0.42.0-1) ... 220s Setting up r-cran-sass (0.4.8+dfsg-1) ... 220s Setting up r-cran-dplyr (1.1.4-1) ... 220s Setting up r-cran-rsqlite (2.3.4-1) ... 220s Setting up r-cran-progress (1.2.3-1) ... 220s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 220s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 220s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 220s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 220s Setting up r-cran-fontawesome (0.5.2-1) ... 220s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 220s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 220s Setting up r-cran-tidyr (1.3.1-1) ... 220s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 220s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 220s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 220s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 220s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 220s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 220s Setting up r-bioc-annotationdbi (1.64.1-1) ... 220s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 220s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 220s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 220s Setting up r-bioc-genomicalignments (1.38.2-1) ... 220s Setting up r-cran-bookdown (0.37+dfsg-1) ... 220s Setting up r-bioc-rtracklayer (1.62.0-1) ... 220s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 220s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 220s Setting up autopkgtest-satdep (0) ... 220s Processing triggers for man-db (2.12.0-3) ... 221s Processing triggers for install-info (7.1-3) ... 221s Processing triggers for libc-bin (2.39-0ubuntu2) ... 221s Processing triggers for tex-common (6.18) ... 222s Running updmap-sys. This may take some time... done. 222s Running mktexlsr /var/lib/texmf ... done. 222s Building format(s) --all. 262s This may take some time... done. 277s (Reading database ... 123876 files and directories currently installed.) 277s Removing autopkgtest-satdep (0) ... 278s autopkgtest [17:40:09]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 278s autopkgtest [17:40:09]: test pkg-r-autopkgtest: [----------------------- 280s Test: Try to load the R library IRanges 282s 282s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 282s Copyright (C) 2024 The R Foundation for Statistical Computing 282s Platform: aarch64-unknown-linux-gnu (64-bit) 282s 282s R is free software and comes with ABSOLUTELY NO WARRANTY. 282s You are welcome to redistribute it under certain conditions. 282s Type 'license()' or 'licence()' for distribution details. 282s 282s R is a collaborative project with many contributors. 282s Type 'contributors()' for more information and 282s 'citation()' on how to cite R or R packages in publications. 282s 282s Type 'demo()' for some demos, 'help()' for on-line help, or 282s 'help.start()' for an HTML browser interface to help. 282s Type 'q()' to quit R. 282s 282s > library('IRanges') 282s Loading required package: BiocGenerics 282s 282s Attaching package: ‘BiocGenerics’ 282s 282s The following objects are masked from ‘package:stats’: 282s 282s IQR, mad, sd, var, xtabs 282s 282s The following objects are masked from ‘package:base’: 282s 282s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 282s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 282s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 282s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 282s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 282s table, tapply, union, unique, unsplit, which.max, which.min 282s 282s Loading required package: S4Vectors 282s Loading required package: stats4 283s 283s Attaching package: ‘S4Vectors’ 283s 283s The following object is masked from ‘package:utils’: 283s 283s findMatches 283s 283s The following objects are masked from ‘package:base’: 283s 283s expand.grid, I, unname 283s 284s > 284s > 284s Other tests are currently unsupported! 284s They will be progressively added. 284s autopkgtest [17:40:15]: test pkg-r-autopkgtest: -----------------------] 284s autopkgtest [17:40:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 284s pkg-r-autopkgtest PASS 285s autopkgtest [17:40:16]: @@@@@@@@@@@@@@@@@@@@ summary 285s pkg-r-autopkgtest PASS 296s Creating nova instance adt-noble-arm64-r-bioc-iranges-20240316-173530-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...