0s autopkgtest [17:34:35]: starting date and time: 2024-03-16 17:34:35+0000
  0s autopkgtest [17:34:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data
  0s autopkgtest [17:34:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.qniflnes/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-interactivedisplaybase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-15.secgroup --name adt-noble-arm64-r-bioc-interactivedisplaybase-20240316-173435-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/
181s autopkgtest [17:37:36]: testbed dpkg architecture: arm64
181s autopkgtest [17:37:36]: testbed apt version: 2.7.12
181s autopkgtest [17:37:36]: @@@@@@@@@@@@@@@@@@@@ test bed setup
182s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB]
182s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB]
182s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB]
183s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB]
183s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B]
183s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB]
183s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B]
183s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB]
183s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B]
183s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB]
183s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B]
183s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB]
183s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B]
186s Fetched 9060 kB in 2s (4358 kB/s)
186s Reading package lists...
190s Reading package lists...
190s Building dependency tree...
190s Reading state information...
190s Calculating upgrade...
191s The following packages will be REMOVED:
191s   libglib2.0-0 libssl3
191s The following NEW packages will be installed:
191s   libglib2.0-0t64 libssl3t64 xdg-user-dirs
191s The following packages have been kept back:
191s   curl
191s The following packages will be upgraded:
191s   gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common
191s   ubuntu-minimal ubuntu-standard
191s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded.
191s Need to get 4613 kB of archives.
191s After this operation, 211 kB of additional disk space will be used.
191s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB]
191s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB]
192s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB]
192s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB]
192s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB]
192s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B]
192s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB]
192s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB]
192s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB]
192s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB]
192s Fetched 4613 kB in 1s (6825 kB/s)
192s (Reading database ... 
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(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74758 files and directories currently installed.)
192s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ...
192s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
193s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested:
193s  udisks2 depends on libglib2.0-0 (>= 2.77.0).
193s  shared-mime-info depends on libglib2.0-0 (>= 2.75.3).
193s  python3-gi depends on libglib2.0-0 (>= 2.77.0).
193s  python3-dbus depends on libglib2.0-0 (>= 2.16.0).
193s  netplan.io depends on libglib2.0-0 (>= 2.70.0).
193s  netplan-generator depends on libglib2.0-0 (>= 2.70.0).
193s  libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0).
193s  libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0).
193s  libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56).
193s  libqmi-proxy depends on libglib2.0-0 (>= 2.30.0).
193s  libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0).
193s  libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
193s  libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
193s  libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0).
193s  libmbim-proxy depends on libglib2.0-0 (>= 2.56).
193s  libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56).
193s  libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0).
193s  libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0).
193s  libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0).
193s  libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3).
193s  libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2).
193s  fwupd depends on libglib2.0-0 (>= 2.79.0).
193s  bolt depends on libglib2.0-0 (>= 2.56.0).
193s 
193s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
193s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ...
193s Selecting previously unselected package libglib2.0-0t64:arm64.
193s (Reading database ... 
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(Reading database ... 74733 files and directories currently installed.)
193s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ...
193s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled...
193s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm'
193s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
193s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ...
193s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ...
193s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested:
193s  wget depends on libssl3 (>= 3.0.0).
193s  u-boot-tools depends on libssl3 (>= 3.0.0).
193s  tnftp depends on libssl3 (>= 3.0.0).
193s  tcpdump depends on libssl3 (>= 3.0.0).
193s  systemd-resolved depends on libssl3 (>= 3.0.0).
193s  systemd depends on libssl3 (>= 3.0.0).
193s  sudo depends on libssl3 (>= 3.0.0).
193s  sbsigntool depends on libssl3 (>= 3.0.0).
193s  rsync depends on libssl3 (>= 3.0.0).
193s  python3-cryptography depends on libssl3 (>= 3.0.0).
193s  openssh-server depends on libssl3 (>= 3.0.10).
193s  openssh-client depends on libssl3 (>= 3.0.10).
193s  mtd-utils depends on libssl3 (>= 3.0.0).
193s  mokutil depends on libssl3 (>= 3.0.0).
193s  linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0).
193s  libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0).
193s  libssh-4:arm64 depends on libssl3 (>= 3.0.0).
193s  libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0).
193s  libsasl2-2:arm64 depends on libssl3 (>= 3.0.0).
193s  libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0).
193s  libnvme1 depends on libssl3 (>= 3.0.0).
193s  libkrb5-3:arm64 depends on libssl3 (>= 3.0.0).
193s  libkmod2:arm64 depends on libssl3 (>= 3.0.0).
193s  libfido2-1:arm64 depends on libssl3 (>= 3.0.0).
193s  libcurl4:arm64 depends on libssl3 (>= 3.0.0).
193s  libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0).
193s  kmod depends on libssl3 (>= 3.0.0).
193s  dhcpcd-base depends on libssl3 (>= 3.0.0).
193s  bind9-libs:arm64 depends on libssl3 (>= 3.0.0).
193s 
193s (Reading database ... 
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(Reading database ... 74758 files and directories currently installed.)
193s Removing libssl3:arm64 (3.0.10-1ubuntu4) ...
193s Selecting previously unselected package libssl3t64:arm64.
193s (Reading database ... 
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(Reading database ... 74747 files and directories currently installed.)
193s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ...
193s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ...
193s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ...
193s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ...
193s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ...
193s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ...
193s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ...
193s Unpacking readline-common (8.2-3.1) over (8.2-3) ...
193s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ...
193s Unpacking ubuntu-minimal (1.536) over (1.535) ...
193s Selecting previously unselected package xdg-user-dirs.
193s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ...
193s Unpacking xdg-user-dirs (0.18-1) ...
193s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ...
193s Unpacking ubuntu-standard (1.536) over (1.535) ...
193s Setting up ubuntu-minimal (1.536) ...
193s Setting up xdg-user-dirs (0.18-1) ...
193s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ...
193s Setting up libtirpc-common (1.3.4+ds-1.1) ...
193s Setting up ubuntu-standard (1.536) ...
193s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ...
193s No schema files found: doing nothing.
193s Setting up libglib2.0-data (2.79.3-3ubuntu5) ...
193s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ...
193s Setting up openssl (3.0.13-0ubuntu1) ...
193s Setting up readline-common (8.2-3.1) ...
194s Processing triggers for man-db (2.12.0-3) ...
194s Processing triggers for install-info (7.1-3) ...
194s Processing triggers for libc-bin (2.39-0ubuntu2) ...
195s Reading package lists...
195s Building dependency tree...
195s Reading state information...
196s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
199s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease
199s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease
199s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease
199s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease
204s Reading package lists...
204s Reading package lists...
205s Building dependency tree...
205s Reading state information...
205s Calculating upgrade...
205s The following packages have been kept back:
205s   curl
205s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
206s Reading package lists...
206s Building dependency tree...
206s Reading state information...
207s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded.
210s autopkgtest [17:38:05]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024
210s autopkgtest [17:38:05]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-interactivedisplaybase
211s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-interactivedisplaybase 1.40.0+dfsg-1 (dsc) [2315 B]
211s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-interactivedisplaybase 1.40.0+dfsg-1 (tar) [5828 B]
211s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-interactivedisplaybase 1.40.0+dfsg-1 (diff) [4160 B]
212s gpgv: Signature made Wed Nov 29 20:04:54 2023 UTC
212s gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
212s gpgv:                issuer "tille@debian.org"
212s gpgv: Can't check signature: No public key
212s dpkg-source: warning: cannot verify inline signature for ./r-bioc-interactivedisplaybase_1.40.0+dfsg-1.dsc: no acceptable signature found
212s autopkgtest [17:38:07]: testing package r-bioc-interactivedisplaybase version 1.40.0+dfsg-1
214s autopkgtest [17:38:09]: build not needed
215s autopkgtest [17:38:10]: test pkg-r-autopkgtest: preparing testbed
222s Reading package lists...
223s Building dependency tree...
223s Reading state information...
223s Starting pkgProblemResolver with broken count: 0
223s Starting 2 pkgProblemResolver with broken count: 0
223s Done
224s The following additional packages will be installed:
224s   build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu
224s   curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core
224s   fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings
224s   fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc
224s   gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13
224s   gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools
224s   javascript-common libasan8 libatomic1 libblas-dev libblas3 libbz2-dev
224s   libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64
224s   libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev
224s   libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6
224s   libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8
224s   libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4
224s   libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
224s   libjs-jquery-datatables libjs-jquery-datatables-extensions
224s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
224s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
224s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
224s   liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
224s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
224s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
224s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
224s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
224s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
224s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
224s   libxss1 libxt6t64 linux-libc-dev littler node-bootstrap-sass node-html5shiv
224s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
224s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics
224s   r-bioc-interactivedisplaybase r-cran-base64enc r-cran-bslib r-cran-cachem
224s   r-cran-cli r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-digest
224s   r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fontawesome
224s   r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools r-cran-htmlwidgets
224s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
224s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr
224s   r-cran-markdown r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises
224s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown
224s   r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr
224s   r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable
224s   r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
224s Suggested packages:
224s   cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib
224s   manpages-dev autoconf automake libtool flex bison gdb gcc-doc
224s   gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2
224s   | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs
224s   fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc
224s   readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended
224s   texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context
224s   wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex
224s   citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib
224s   r-base-html texlive-base texlive-latex-base texlive-plain-generic
224s   texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo
224s   r-bioc-biobase r-bioc-s4vectors r-bioc-iranges r-bioc-genomicranges
224s   r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools r-bioc-annotationdbi
224s   r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-rstudioapi
224s   r-cran-testthat r-cran-covr r-cran-getopt r-cran-httr r-cran-roxygen2
224s   r-cran-inline r-cran-callr r-cran-plm r-cran-zoo r-cran-survival
224s Recommended packages:
224s   bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools
224s   r-recommended r-doc-html r-cran-curl r-cran-ggplot2 r-cran-testthat
224s   r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx
224s   r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-tibble r-cran-whoami
224s   r-cran-xml2 r-cran-future r-cran-testit w3m | www-browser r-cran-lattice
224s   r-cran-dplyr r-cran-rsvg r-cran-pillar r-cran-spelling r-cran-dbi
224s   r-cran-rsqlite r-cran-waldo r-cran-cairo r-cran-ragg r-cran-httr
224s   r-cran-r.rsp r-cran-sf r-cran-codetools r-cran-formatr r-cran-gridsvg
224s   r-cran-jpeg r-cran-magick r-cran-png r-cran-reticulate r-cran-rgl
224s   r-cran-tikzdevice r-cran-webshot r-cran-svglite node-highlight.js
224s   r-cran-lintr r-cran-tidyverse r-cran-rcurl r-cran-purrr r-cran-usethis
224s   r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-bit64 r-cran-generics
224s   r-cran-pkgdown r-cran-zeallot r-cran-remotes r-cran-renv r-cran-runit
224s   libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
224s   x11-xserver-utils
224s The following packages will be REMOVED:
224s   libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3
224s The following NEW packages will be installed:
224s   autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu
224s   cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config
224s   fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome
224s   fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu
224s   g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu
224s   gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu
224s   gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8
224s   libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2
224s   libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1
224s   libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3
224s   libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0
224s   libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev
224s   libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js
224s   libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions
224s   libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax
224s   libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify
224s   libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3
224s   liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev
224s   libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
224s   libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
224s   libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpsl5t64
224s   libreadline-dev libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev
224s   libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6
224s   libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1
224s   libxss1 libxt6t64 linux-libc-dev littler node-bootstrap-sass node-html5shiv
224s   node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf
224s   pkgconf-bin r-base-core r-base-dev r-bioc-biocgenerics
224s   r-bioc-interactivedisplaybase r-cran-base64enc r-cran-bslib r-cran-cachem
224s   r-cran-cli r-cran-commonmark r-cran-crayon r-cran-crosstalk r-cran-digest
224s   r-cran-dt r-cran-ellipsis r-cran-evaluate r-cran-fastmap r-cran-fontawesome
224s   r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools r-cran-htmlwidgets
224s   r-cran-httpuv r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-later
224s   r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr
224s   r-cran-markdown r-cran-memoise r-cran-mime r-cran-pkgkitten r-cran-promises
224s   r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rlang r-cran-rmarkdown
224s   r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-stringi r-cran-stringr
224s   r-cran-tinytex r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xtable
224s   r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev
224s The following packages will be upgraded:
224s   curl
224s 1 upgraded, 190 newly installed, 5 to remove and 0 not upgraded.
224s Need to get 197 MB/197 MB of archives.
224s After this operation, 764 MB of additional disk space will be used.
224s Get:1 /tmp/autopkgtest.R4aZWv/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B]
224s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB]
224s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB]
224s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB]
224s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB]
224s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB]
224s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB]
224s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB]
224s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB]
224s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB]
224s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB]
224s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB]
224s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB]
224s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB]
224s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB]
224s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB]
224s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB]
225s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B]
225s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B]
225s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB]
225s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB]
225s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB]
225s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB]
225s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB]
225s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB]
225s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB]
225s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB]
225s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB]
225s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB]
225s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB]
225s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB]
225s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB]
225s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B]
225s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B]
225s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB]
226s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB]
226s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB]
226s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B]
226s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B]
226s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B]
226s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB]
226s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB]
226s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB]
226s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB]
226s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB]
226s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB]
226s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB]
226s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB]
226s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB]
226s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB]
226s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB]
226s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB]
226s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB]
226s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B]
226s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B]
226s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB]
226s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B]
226s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB]
226s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB]
226s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB]
226s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB]
226s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB]
226s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B]
226s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB]
226s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB]
226s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB]
226s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB]
226s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB]
226s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB]
226s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB]
226s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB]
226s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB]
227s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB]
227s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB]
227s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B]
227s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B]
227s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B]
227s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB]
227s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB]
227s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB]
227s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB]
227s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB]
227s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB]
227s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB]
227s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB]
227s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
227s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB]
227s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B]
227s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB]
227s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB]
227s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB]
227s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB]
227s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB]
227s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB]
227s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB]
227s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB]
227s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB]
227s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB]
227s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB]
227s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB]
227s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB]
227s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB]
227s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB]
227s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B]
227s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB]
227s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB]
227s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B]
227s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB]
227s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB]
227s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB]
228s Get:111 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB]
228s Get:112 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB]
228s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB]
228s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB]
228s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB]
228s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB]
228s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB]
228s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB]
228s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB]
228s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B]
228s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB]
228s Get:122 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB]
228s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB]
228s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB]
228s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB]
228s Get:126 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB]
229s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB]
229s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B]
229s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB]
229s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB]
229s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB]
229s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB]
229s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB]
229s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB]
229s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB]
229s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B]
229s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB]
230s Get:138 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B]
230s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B]
230s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB]
230s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB]
230s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB]
230s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB]
230s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB]
230s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB]
230s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB]
230s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB]
230s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB]
230s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB]
230s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB]
230s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB]
230s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB]
230s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB]
230s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB]
230s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB]
230s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB]
230s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB]
230s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB]
230s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB]
230s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB]
230s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB]
230s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB]
230s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB]
230s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB]
230s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB]
230s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
230s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB]
230s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB]
230s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB]
230s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB]
230s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB]
230s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB]
230s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB]
230s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB]
230s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB]
230s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB]
230s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB]
230s Get:178 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB]
230s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB]
230s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB]
230s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB]
231s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB]
231s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB]
231s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB]
231s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB]
231s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB]
231s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB]
231s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB]
231s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB]
231s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB]
231s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB]
232s Preconfiguring packages ...
232s Fetched 197 MB in 7s (28.4 MB/s)
232s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested:
232s  wget depends on libpsl5 (>= 0.16.0).
232s  libcurl4:arm64 depends on libpsl5 (>= 0.16.0).
232s  libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0).
232s 
232s (Reading database ... 
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(Reading database ... 74774 files and directories currently installed.)
232s Removing libpsl5:arm64 (0.21.2-1build1) ...
232s Selecting previously unselected package libpsl5t64:arm64.
232s (Reading database ... 
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(Reading database ... 74769 files and directories currently installed.)
232s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ...
232s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ...
232s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ...
232s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ...
232s (Reading database ... 
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(Reading database ... 74775 files and directories currently installed.)
232s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ...
232s Selecting previously unselected package libcurl4t64:arm64.
232s (Reading database ... 
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(Reading database ... 95%
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(Reading database ... 74770 files and directories currently installed.)
232s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ...
232s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ...
232s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested:
232s  libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2).
232s  libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1).
232s 
232s (Reading database ... 
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(Reading database ... 60%
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(Reading database ... 70%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74776 files and directories currently installed.)
232s Removing libpng16-16:arm64 (1.6.43-1) ...
232s Selecting previously unselected package libpng16-16t64:arm64.
232s (Reading database ... 
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(Reading database ... 65%
(Reading database ... 70%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74766 files and directories currently installed.)
233s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ...
233s Unpacking libpng16-16t64:arm64 (1.6.43-3) ...
233s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested:
233s  parted depends on libreadline8 (>= 6.0).
233s  libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta).
233s  gpgsm depends on libreadline8 (>= 6.0).
233s  gpgconf depends on libreadline8 (>= 6.0).
233s  gpg depends on libreadline8 (>= 6.0).
233s  gawk depends on libreadline8 (>= 6.0).
233s  fdisk depends on libreadline8 (>= 6.0).
233s 
233s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74777 files and directories currently installed.)
233s Removing libreadline8:arm64 (8.2-3) ...
233s Selecting previously unselected package libreadline8t64:arm64.
233s (Reading database ... 
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(Reading database ... 60%
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(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74765 files and directories currently installed.)
233s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ...
233s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
233s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
233s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
233s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
233s Unpacking libreadline8t64:arm64 (8.2-3.1) ...
233s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested:
233s  lsof depends on libtirpc3 (>= 1.0.2).
233s  libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2).
233s  libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2).
233s  libnsl2:arm64 depends on libtirpc3 (>= 1.0.2).
233s  iproute2 depends on libtirpc3 (>= 1.0.2).
233s 
233s (Reading database ... 
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(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74785 files and directories currently installed.)
233s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ...
233s Selecting previously unselected package libtirpc3t64:arm64.
233s (Reading database ... 
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(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 74779 files and directories currently installed.)
233s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ...
233s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64'
233s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
233s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ...
233s Selecting previously unselected package libc-dev-bin.
233s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ...
233s Unpacking libc-dev-bin (2.39-0ubuntu2) ...
233s Selecting previously unselected package linux-libc-dev:arm64.
233s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ...
233s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ...
233s Selecting previously unselected package libcrypt-dev:arm64.
233s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ...
233s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ...
233s Selecting previously unselected package libtirpc-dev:arm64.
233s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ...
233s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ...
233s Selecting previously unselected package libnsl-dev:arm64.
233s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ...
233s Unpacking libnsl-dev:arm64 (1.3.0-3) ...
233s Selecting previously unselected package rpcsvc-proto.
233s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ...
233s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ...
233s Selecting previously unselected package libc6-dev:arm64.
233s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ...
233s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ...
233s Selecting previously unselected package libisl23:arm64.
234s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ...
234s Unpacking libisl23:arm64 (0.26-3) ...
234s Selecting previously unselected package libmpc3:arm64.
234s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ...
234s Unpacking libmpc3:arm64 (1.3.1-1) ...
234s Selecting previously unselected package cpp-13-aarch64-linux-gnu.
234s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
234s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
234s Selecting previously unselected package cpp-13.
234s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ...
234s Unpacking cpp-13 (13.2.0-17ubuntu2) ...
234s Selecting previously unselected package cpp-aarch64-linux-gnu.
234s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
234s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
234s Selecting previously unselected package cpp.
234s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ...
234s Unpacking cpp (4:13.2.0-7ubuntu1) ...
234s Selecting previously unselected package libcc1-0:arm64.
234s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ...
234s Selecting previously unselected package libgomp1:arm64.
234s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ...
234s Selecting previously unselected package libitm1:arm64.
234s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ...
234s Selecting previously unselected package libatomic1:arm64.
234s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ...
234s Selecting previously unselected package libasan8:arm64.
234s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ...
234s Selecting previously unselected package liblsan0:arm64.
234s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ...
234s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ...
235s Selecting previously unselected package libtsan2:arm64.
235s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ...
235s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ...
235s Selecting previously unselected package libubsan1:arm64.
235s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ...
235s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ...
235s Selecting previously unselected package libhwasan0:arm64.
235s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ...
235s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ...
235s Selecting previously unselected package libgcc-13-dev:arm64.
235s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ...
235s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ...
235s Selecting previously unselected package gcc-13-aarch64-linux-gnu.
235s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ...
235s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ...
235s Selecting previously unselected package gcc-13.
235s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ...
235s Unpacking gcc-13 (13.2.0-17ubuntu2) ...
235s Selecting previously unselected package gcc-aarch64-linux-gnu.
235s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ...
235s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ...
235s Selecting previously unselected package gcc.
236s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ...
236s Unpacking gcc (4:13.2.0-7ubuntu1) ...
236s Selecting previously unselected package libstdc++-13-dev:arm64.
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239s Selecting previously unselected package libice6:arm64.
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244s Selecting previously unselected package pandoc-data.
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245s Selecting previously unselected package r-bioc-biocgenerics.
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245s Unpacking r-bioc-biocgenerics (0.48.1-2) ...
245s Selecting previously unselected package r-cran-pkgkitten.
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245s Selecting previously unselected package r-cran-rcpp.
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245s Selecting previously unselected package r-cran-rlang.
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246s Selecting previously unselected package r-cran-later.
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246s Unpacking r-cran-later (1.3.2+dfsg-1) ...
246s Selecting previously unselected package r-cran-fastmap.
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246s Selecting previously unselected package r-cran-magrittr.
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246s Unpacking r-cran-magrittr (2.0.3-1) ...
246s Selecting previously unselected package r-cran-r6.
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247s Selecting previously unselected package r-cran-promises.
247s Preparing to unpack .../141-r-cran-promises_1.2.1+dfsg-1_arm64.deb ...
247s Unpacking r-cran-promises (1.2.1+dfsg-1) ...
247s Selecting previously unselected package r-cran-httpuv.
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247s Selecting previously unselected package r-cran-mime.
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247s Unpacking r-cran-mime (0.12-1) ...
247s Selecting previously unselected package r-cran-jsonlite.
247s Preparing to unpack .../144-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ...
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247s Selecting previously unselected package r-cran-xtable.
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247s Selecting previously unselected package r-cran-base64enc.
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247s Selecting previously unselected package r-cran-digest.
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247s Selecting previously unselected package r-cran-ellipsis.
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248s Selecting previously unselected package r-cran-htmltools.
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248s Selecting previously unselected package r-cran-fontawesome.
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248s Selecting previously unselected package r-cran-crayon.
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249s Selecting previously unselected package r-cran-memoise.
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250s Selecting previously unselected package r-cran-shiny.
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250s Selecting previously unselected package r-cran-yaml.
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256s Setting up r-cran-rcpp (1.0.12-1) ...
256s Setting up r-bioc-biocgenerics (0.48.1-2) ...
256s Setting up r-cran-rlang (1.1.3-1) ...
256s Setting up littler (0.3.19-1) ...
256s Setting up r-cran-xfun (0.41+dfsg-1) ...
256s Setting up r-cran-withr (2.5.0-1) ...
256s Setting up r-cran-mime (0.12-1) ...
256s Setting up r-cran-base64enc (0.1-3-3) ...
256s Setting up r-cran-digest (0.6.34-1) ...
256s Setting up r-cran-yaml (2.3.8-1) ...
256s Setting up r-cran-evaluate (0.23-1) ...
256s Setting up r-cran-highr (0.10+dfsg-1) ...
256s Setting up r-cran-glue (1.7.0-1) ...
256s Setting up r-cran-xtable (1:1.8-4-2) ...
256s Setting up r-cran-cli (3.6.2-1) ...
256s Setting up gfortran (4:13.2.0-7ubuntu1) ...
256s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
256s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist
256s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
256s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist
256s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
256s Setting up r-cran-fastmap (1.1.1-1) ...
256s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
256s Setting up r-cran-stringi (1.8.3-1) ...
256s Setting up r-cran-markdown (1.12+dfsg-1) ...
256s Setting up r-cran-later (1.3.2+dfsg-1) ...
256s Setting up r-cran-tinytex (0.49-1) ...
256s Setting up r-cran-knitr (1.45+dfsg-1) ...
256s Setting up g++ (4:13.2.0-7ubuntu1) ...
256s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode
256s Setting up r-cran-cachem (1.0.8-1) ...
256s Setting up build-essential (12.10ubuntu1) ...
256s Setting up r-cran-vctrs (0.6.5-1) ...
256s Setting up r-cran-ellipsis (0.3.2-2) ...
256s Setting up r-base-dev (4.3.3-2build1) ...
256s Setting up r-cran-stringr (1.5.1-1) ...
256s Setting up r-cran-memoise (2.0.1-1) ...
256s Setting up r-cran-promises (1.2.1+dfsg-1) ...
256s Setting up r-cran-htmltools (0.5.7-1) ...
256s Setting up pkg-r-autopkgtest (20231212ubuntu1) ...
256s Setting up r-cran-sass (0.4.8+dfsg-1) ...
256s Setting up r-cran-httpuv (1.6.14+dfsg-1) ...
256s Setting up r-cran-fontawesome (0.5.2-1) ...
256s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ...
256s Setting up r-cran-bslib (0.6.1+dfsg-1) ...
256s Setting up r-cran-shiny (1.8.0+dfsg-1) ...
256s Setting up r-cran-rmarkdown (2.25+dfsg-3) ...
256s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ...
256s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ...
256s Setting up r-cran-dt (0.31+dfsg-1) ...
256s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ...
256s Setting up autopkgtest-satdep (0) ...
256s Processing triggers for man-db (2.12.0-3) ...
257s Processing triggers for install-info (7.1-3) ...
257s Processing triggers for libc-bin (2.39-0ubuntu2) ...
268s (Reading database ... 92317 files and directories currently installed.)
268s Removing autopkgtest-satdep (0) ...
269s autopkgtest [17:39:04]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest
269s autopkgtest [17:39:04]: test pkg-r-autopkgtest: [-----------------------
269s Test: Try to load the R library interactiveDisplayBase
270s 
270s R version 4.3.3 (2024-02-29) -- "Angel Food Cake"
270s Copyright (C) 2024 The R Foundation for Statistical Computing
270s Platform: aarch64-unknown-linux-gnu (64-bit)
270s 
270s R is free software and comes with ABSOLUTELY NO WARRANTY.
270s You are welcome to redistribute it under certain conditions.
270s Type 'license()' or 'licence()' for distribution details.
270s 
270s R is a collaborative project with many contributors.
270s Type 'contributors()' for more information and
270s 'citation()' on how to cite R or R packages in publications.
270s 
270s Type 'demo()' for some demos, 'help()' for on-line help, or
270s 'help.start()' for an HTML browser interface to help.
270s Type 'q()' to quit R.
270s 
270s > library('interactiveDisplayBase')
270s Loading required package: BiocGenerics
271s 
271s Attaching package: ‘BiocGenerics’
271s 
271s The following objects are masked from ‘package:stats’:
271s 
271s     IQR, mad, sd, var, xtabs
271s 
271s The following objects are masked from ‘package:base’:
271s 
271s     anyDuplicated, aperm, append, as.data.frame, basename, cbind,
271s     colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find,
271s     get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply,
271s     match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
271s     Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort,
271s     table, tapply, union, unique, unsplit, which.max, which.min
271s 
271s > 
271s > 
271s Other tests are currently unsupported!
271s They will be progressively added.
272s autopkgtest [17:39:07]: test pkg-r-autopkgtest: -----------------------]
272s autopkgtest [17:39:07]: test pkg-r-autopkgtest:  - - - - - - - - - - results - - - - - - - - - -
272s pkg-r-autopkgtest    PASS
273s autopkgtest [17:39:08]: @@@@@@@@@@@@@@@@@@@@ summary
273s pkg-r-autopkgtest    PASS
284s Creating nova instance adt-noble-arm64-r-bioc-interactivedisplaybase-20240316-173435-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...