0s autopkgtest [17:04:09]: starting date and time: 2024-03-16 17:04:09+0000 0s autopkgtest [17:04:09]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:04:09]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.dpbudt00/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:hdf5,src:curl,src:libpsl,src:mpich,src:openmpi,src:openssl,src:orthanc-python,src:pmix --apt-upgrade r-bioc-hdf5array --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=hdf5/1.10.10+repack-3.1ubuntu3 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 mpich/4.2.0-5build1 openmpi/4.1.6-6ubuntu1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 pmix/5.0.1-4.1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-hdf5array-20240316-170409-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 151s autopkgtest [17:06:40]: testbed dpkg architecture: arm64 151s autopkgtest [17:06:40]: testbed apt version: 2.7.12 151s autopkgtest [17:06:40]: @@@@@@@@@@@@@@@@@@@@ test bed setup 151s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 152s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 152s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3673 kB] 153s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 153s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 153s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 153s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 153s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 153s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 153s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3994 kB] 153s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 153s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 153s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 155s Fetched 9063 kB in 2s (4604 kB/s) 155s Reading package lists... 158s Reading package lists... 158s Building dependency tree... 158s Reading state information... 159s Calculating upgrade... 160s The following packages will be REMOVED: 160s libssl3 160s The following NEW packages will be installed: 160s libssl3t64 160s The following packages have been kept back: 160s curl 160s The following packages will be upgraded: 160s openssl ubuntu-minimal ubuntu-standard 160s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 160s Need to get 2775 kB of archives. 160s After this operation, 72.7 kB of additional disk space will be used. 160s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 160s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 160s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 160s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 161s Fetched 2775 kB in 1s (3925 kB/s) 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 162s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 162s wget depends on libssl3 (>= 3.0.0). 162s u-boot-tools depends on libssl3 (>= 3.0.0). 162s tnftp depends on libssl3 (>= 3.0.0). 162s tcpdump depends on libssl3 (>= 3.0.0). 162s systemd-resolved depends on libssl3 (>= 3.0.0). 162s systemd depends on libssl3 (>= 3.0.0). 162s sudo depends on libssl3 (>= 3.0.0). 162s sbsigntool depends on libssl3 (>= 3.0.0). 162s rsync depends on libssl3 (>= 3.0.0). 162s python3-cryptography depends on libssl3 (>= 3.0.0). 162s openssh-server depends on libssl3 (>= 3.0.10). 162s openssh-client depends on libssl3 (>= 3.0.10). 162s mtd-utils depends on libssl3 (>= 3.0.0). 162s mokutil depends on libssl3 (>= 3.0.0). 162s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 162s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 162s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 162s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 162s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 162s libnvme1 depends on libssl3 (>= 3.0.0). 162s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 162s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 162s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 162s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 162s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 162s kmod depends on libssl3 (>= 3.0.0). 162s dhcpcd-base depends on libssl3 (>= 3.0.0). 162s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 162s 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 162s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 162s Selecting previously unselected package libssl3t64:arm64. 162s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 162s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 162s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 162s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 162s Unpacking ubuntu-minimal (1.536) over (1.535) ... 162s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 162s Unpacking ubuntu-standard (1.536) over (1.535) ... 162s Setting up ubuntu-minimal (1.536) ... 162s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 162s Setting up ubuntu-standard (1.536) ... 162s Setting up openssl (3.0.13-0ubuntu1) ... 162s Processing triggers for man-db (2.12.0-3) ... 163s Processing triggers for libc-bin (2.39-0ubuntu2) ... 163s Reading package lists... 164s Building dependency tree... 164s Reading state information... 164s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 165s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 165s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 165s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 165s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 166s Reading package lists... 166s Reading package lists... 167s Building dependency tree... 167s Reading state information... 167s Calculating upgrade... 167s The following packages have been kept back: 167s curl 167s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 167s Reading package lists... 168s Building dependency tree... 168s Reading state information... 168s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 171s autopkgtest [17:07:00]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 172s autopkgtest [17:07:01]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-hdf5array 174s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hdf5array 1.30.1-1 (dsc) [2312 B] 174s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hdf5array 1.30.1-1 (tar) [8098 kB] 174s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-hdf5array 1.30.1-1 (diff) [6180 B] 174s gpgv: Signature made Tue Feb 20 13:31:09 2024 UTC 174s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 174s gpgv: issuer "tille@debian.org" 174s gpgv: Can't check signature: No public key 174s dpkg-source: warning: cannot verify inline signature for ./r-bioc-hdf5array_1.30.1-1.dsc: no acceptable signature found 175s autopkgtest [17:07:04]: testing package r-bioc-hdf5array version 1.30.1-1 178s autopkgtest [17:07:07]: build not needed 180s autopkgtest [17:07:09]: test pkg-r-autopkgtest: preparing testbed 181s Reading package lists... 181s Building dependency tree... 181s Reading state information... 182s Starting pkgProblemResolver with broken count: 0 182s Starting 2 pkgProblemResolver with broken count: 0 182s Done 182s The following additional packages will be installed: 182s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 182s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 182s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 182s fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc 182s gcc-13 gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 182s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 182s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 182s libblas-dev libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev 182s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev 182s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 182s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 182s libhdf5-103-1t64 libhdf5-cpp-103-1t64 libhdf5-dev libhdf5-fortran-102t64 182s libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 libhdf5-hl-fortran-100t64 libhwasan0 182s libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 182s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 182s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 182s libjs-jquery-datatables libjs-jquery-datatables-extensions 182s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 182s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 182s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 182s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 182s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 182s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 182s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 182s libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev libsz2 libtcl8.6 182s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 182s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 182s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 182s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 182s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub 182s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 182s r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 182s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-experimenthub 182s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 182s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 182s r-bioc-hdf5array r-bioc-interactivedisplaybase r-bioc-iranges 182s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 182s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 182s r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment 182s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 182s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 182s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 182s r-cran-blob r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 182s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 182s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 182s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 182s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 182s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 182s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 182s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 182s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 182s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 182s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 182s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 182s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 182s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 182s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 182s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 182s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 182s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 182s unzip x11-common xdg-utils zip zlib1g-dev 182s Suggested packages: 182s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 182s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 182s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 182s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 182s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 182s libboost-context1.83-dev libboost-contract1.83-dev 182s libboost-coroutine1.83-dev libboost-date-time1.83-dev 182s libboost-exception1.83-dev libboost-fiber1.83-dev 182s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 182s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 182s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 182s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 182s libboost-numpy1.83-dev libboost-program-options1.83-dev 182s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 182s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 182s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 182s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 182s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 182s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 182s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 182s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 182s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 182s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 182s librsvg2-bin groff ghc php python ruby libjs-katex 182s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 182s r-base-html texlive-base texlive-latex-base texlive-plain-generic 182s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 182s r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle 182s r-bioc-variantannotation r-bioc-ensembldb r-bioc-all r-cran-testthat 182s r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc r-cran-doparallel 182s r-bioc-shortread r-cran-batchtools r-cran-data.table r-cran-mockery 182s r-cran-webmockr r-bioc-bsgenome r-cran-lobstr r-cran-profmem r-cran-class 182s r-cran-rcolorbrewer r-cran-r.utils r-bioc-edger r-bioc-annotationfilter 182s r-cran-markdown r-bioc-gviz r-bioc-dexseq r-cran-bench r-cran-ggplot2 182s r-cran-tinytest r-bioc-limma r-bioc-scrnaseq r-cran-rtsne r-cran-roxygen2 182s r-cran-ff r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 182s r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins 182s r-cran-scales r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 182s r-cran-rlecuyer r-cran-spelling r-cran-brio r-cran-callr r-cran-here 182s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo 182s Recommended packages: 182s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 182s r-recommended r-doc-html r-cran-testthat r-cran-remotes r-cran-ggplot2 182s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 182s r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-bench 182s r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales 182s r-cran-spelling r-cran-webutils r-cran-rpostgresql r-cran-broom 182s r-cran-rmysql r-cran-future r-cran-testit w3m | www-browser r-cran-unitizer 182s r-cran-rsvg r-cran-pkgload r-cran-waldo r-cran-cairo r-cran-markdown 182s r-cran-ragg r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-gridsvg 182s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice r-cran-webshot 182s r-cran-svglite node-highlight.js r-cran-lintr r-cran-tidyverse 182s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-usethis 182s r-cran-dygraphs r-cran-rsconnect r-cran-downlit r-cran-dbitest r-cran-gert 182s r-cran-gh r-cran-rvest r-cran-data.table r-cran-mockr r-cran-formattable 182s r-cran-pkgdown r-cran-zeallot r-cran-renv libfile-mimeinfo-perl 182s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 182s The following packages will be REMOVED: 182s libcurl4 libpsl5 182s The following NEW packages will be installed: 182s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 182s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 182s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 182s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 182s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 182s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 182s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 182s libaec-dev libaec0 libasan8 libatomic1 libblas-dev libblas3 libblosc1 182s libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 182s libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 182s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 182s libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1t64 libhdf5-cpp-103-1t64 182s libhdf5-dev libhdf5-fortran-102t64 libhdf5-hl-100t64 libhdf5-hl-cpp-100t64 182s libhdf5-hl-fortran-100t64 libhwasan0 libice6 libicu-dev libisl23 libitm1 182s libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 182s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 182s libjs-jquery libjs-jquery-datatables libjs-jquery-datatables-extensions 182s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 182s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 182s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 182s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 182s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 182s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 182s libpixman-1-0 libpkgconf3 libpng-dev libpsl5t64 libreadline-dev libsharpyuv0 182s libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev libsz2 libtcl8.6 182s libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 182s libwebp7 libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 182s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 182s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 182s r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-annotationhub 182s r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio 182s r-bioc-biocparallel r-bioc-biocversion r-bioc-biomart r-bioc-biostrings 182s r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-experimenthub 182s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 182s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 182s r-bioc-hdf5array r-bioc-interactivedisplaybase r-bioc-iranges 182s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 182s r-bioc-rhdf5lib r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 182s r-bioc-s4arrays r-bioc-s4vectors r-bioc-singlecellexperiment 182s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 182s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc 182s r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 182s r-cran-blob r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 182s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-crosstalk r-cran-curl 182s r-cran-dbi r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-dt 182s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-filelock 182s r-cran-fontawesome r-cran-formatr r-cran-fs r-cran-futile.logger 182s r-cran-futile.options r-cran-generics r-cran-glue r-cran-highr r-cran-hms 182s r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv r-cran-httr 182s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 182s r-cran-lattice r-cran-lazyeval r-cran-lifecycle r-cran-littler 182s r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 182s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 182s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 182s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 182s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-runit 182s r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-stringi 182s r-cran-stringr r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr 182s r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr 182s r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto 182s unzip x11-common xdg-utils zip zlib1g-dev 182s The following packages will be upgraded: 182s curl 182s 1 upgraded, 287 newly installed, 2 to remove and 0 not upgraded. 182s Need to get 327 MB/327 MB of archives. 182s After this operation, 1129 MB of additional disk space will be used. 182s Get:1 /tmp/autopkgtest.rXk8MC/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [828 B] 183s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 183s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 183s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 183s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 183s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 183s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 183s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 183s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 183s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 183s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 183s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 183s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 184s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 184s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 184s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 184s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 184s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 184s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 184s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 184s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 184s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 184s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 184s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 184s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 184s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 185s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 185s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 185s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 185s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 185s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 185s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 185s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 185s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 185s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 185s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 185s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 185s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 185s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 185s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 185s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 186s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 186s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 186s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 186s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 186s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 186s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 186s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 186s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 186s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 186s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 186s Get:53 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 hdf5-helpers arm64 1.10.10+repack-3.1ubuntu3 [15.8 kB] 186s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 186s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 186s Get:56 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 186s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 186s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 186s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 186s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 186s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 186s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 186s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 186s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 186s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 186s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 186s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 186s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 186s Get:69 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 186s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 186s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 186s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 186s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 186s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 186s Get:75 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [1192 kB] 186s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-3.1ubuntu3 [120 kB] 186s Get:77 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-3.1ubuntu3 [86.3 kB] 186s Get:78 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-3.1ubuntu3 [55.8 kB] 186s Get:79 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-3.1ubuntu3 [31.0 kB] 186s Get:80 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-3.1ubuntu3 [11.0 kB] 186s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 186s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 186s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 186s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 186s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 187s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 187s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 187s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 187s Get:89 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 libhdf5-dev arm64 1.10.10+repack-3.1ubuntu3 [3038 kB] 187s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 187s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 187s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 187s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 187s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 187s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 187s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 187s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 187s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 187s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 187s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 187s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB] 187s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 187s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 187s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 187s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 187s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 187s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 187s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 188s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 188s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 188s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 188s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 188s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 188s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 188s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 188s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 188s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 188s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 188s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 188s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 188s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 188s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 188s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 188s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 188s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 188s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 188s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 188s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 188s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 188s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 188s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 188s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 188s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 188s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 188s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 188s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 188s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 188s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 188s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 188s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 188s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 189s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 189s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 189s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 189s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 189s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 189s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 189s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 190s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 190s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 190s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 190s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 190s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 190s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 190s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 190s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 190s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 190s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 190s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 190s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 190s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 190s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 190s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 190s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 190s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 190s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 190s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 190s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 190s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 190s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 190s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 190s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 191s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 191s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 191s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 191s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 191s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 191s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 191s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 191s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 191s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 191s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 191s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 191s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 191s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 191s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 191s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 191s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 192s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 192s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 192s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 192s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 192s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 192s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 192s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 192s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 192s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 192s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 192s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 192s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 192s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 192s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 192s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 192s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 193s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 193s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 193s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 193s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 193s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 193s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 193s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocversion all 3.18.1-1 [11.0 kB] 193s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 193s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 193s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 193s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 193s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 193s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 193s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 193s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 193s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 193s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 193s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 193s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 193s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 193s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 193s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 193s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 193s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 193s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 193s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 194s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 194s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 194s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 194s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 194s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 194s Get:236 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 194s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 194s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 194s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 194s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 194s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 194s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 194s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 194s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dt all 0.31+dfsg-1 [265 kB] 194s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-interactivedisplaybase all 1.40.0+dfsg-1 [30.4 kB] 194s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationhub all 3.10.0+dfsg-1 [454 kB] 194s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 194s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 194s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 194s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 194s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 194s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 194s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 194s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 194s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 194s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 194s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 194s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 194s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 194s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 194s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 194s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 194s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 194s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 194s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 194s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 194s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 194s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 194s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 194s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 194s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-experimenthub all 2.10.0+ds-1 [79.9 kB] 194s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 195s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 195s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 195s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 195s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 195s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 195s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 195s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 195s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 195s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 195s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 195s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 195s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 195s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 195s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 195s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 195s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 197s Preconfiguring packages ... 197s Fetched 327 MB in 13s (25.0 MB/s) 197s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 197s wget depends on libpsl5 (>= 0.16.0). 197s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 197s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 197s 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 197s Removing libpsl5:arm64 (0.21.2-1build1) ... 197s Selecting previously unselected package libpsl5t64:arm64. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 197s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 197s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 197s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 197s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 197s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 197s Selecting previously unselected package libcurl4t64:arm64. 197s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 197s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 197s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 197s Selecting previously unselected package libc-dev-bin. 197s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 197s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 197s Selecting previously unselected package linux-libc-dev:arm64. 197s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 197s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 198s Selecting previously unselected package libcrypt-dev:arm64. 198s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 198s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 198s Selecting previously unselected package libtirpc-dev:arm64. 198s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 198s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 198s Selecting previously unselected package libnsl-dev:arm64. 198s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 198s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 198s Selecting previously unselected package rpcsvc-proto. 198s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 198s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 198s Selecting previously unselected package libc6-dev:arm64. 198s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 198s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 198s Selecting previously unselected package libisl23:arm64. 198s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 198s Unpacking libisl23:arm64 (0.26-3) ... 198s Selecting previously unselected package libmpc3:arm64. 198s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 198s Unpacking libmpc3:arm64 (1.3.1-1) ... 198s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 198s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package cpp-13. 198s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package cpp-aarch64-linux-gnu. 198s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package cpp. 198s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking cpp (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package libcc1-0:arm64. 198s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libgomp1:arm64. 198s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libitm1:arm64. 198s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libatomic1:arm64. 198s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libasan8:arm64. 198s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package liblsan0:arm64. 198s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libtsan2:arm64. 198s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 199s Selecting previously unselected package libubsan1:arm64. 199s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 199s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 199s Selecting previously unselected package libhwasan0:arm64. 199s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 199s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 199s Selecting previously unselected package libgcc-13-dev:arm64. 199s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 199s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gcc-13. 199s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gcc-aarch64-linux-gnu. 199s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package gcc. 199s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gcc (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package libstdc++-13-dev:arm64. 199s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13-aarch64-linux-gnu. 199s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package g++-13. 200s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking g++-13 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package g++-aarch64-linux-gnu. 200s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package g++. 200s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 200s Unpacking g++ (4:13.2.0-7ubuntu1) ... 200s Selecting previously unselected package build-essential. 200s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 200s Unpacking build-essential (12.10ubuntu1) ... 200s Selecting previously unselected package dctrl-tools. 200s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 200s Unpacking dctrl-tools (2.24-3build2) ... 200s Selecting previously unselected package fonts-dejavu-mono. 200s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 200s Unpacking fonts-dejavu-mono (2.37-8) ... 200s Selecting previously unselected package fonts-dejavu-core. 200s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 200s Unpacking fonts-dejavu-core (2.37-8) ... 200s Selecting previously unselected package fontconfig-config. 200s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 200s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package libfontconfig1:arm64. 200s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 200s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package fontconfig. 200s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 200s Unpacking fontconfig (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package fonts-font-awesome. 200s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 200s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 200s Selecting previously unselected package fonts-glyphicons-halflings. 200s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 200s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 200s Selecting previously unselected package fonts-mathjax. 200s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 200s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 200s Selecting previously unselected package libgfortran5:arm64. 200s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 200s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 200s Selecting previously unselected package libgfortran-13-dev:arm64. 200s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 200s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 200s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package gfortran-13. 201s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 201s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package gfortran-aarch64-linux-gnu. 201s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package gfortran. 201s Preparing to unpack .../048-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package hdf5-helpers. 201s Preparing to unpack .../049-hdf5-helpers_1.10.10+repack-3.1ubuntu3_arm64.deb ... 201s Unpacking hdf5-helpers (1.10.10+repack-3.1ubuntu3) ... 201s Selecting previously unselected package icu-devtools. 201s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 201s Unpacking icu-devtools (74.2-1ubuntu1) ... 201s Selecting previously unselected package javascript-common. 201s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 201s Unpacking javascript-common (11+nmu1) ... 201s Selecting previously unselected package libaec0:arm64. 201s Preparing to unpack .../052-libaec0_1.1.2-1_arm64.deb ... 201s Unpacking libaec0:arm64 (1.1.2-1) ... 201s Selecting previously unselected package libblas3:arm64. 201s Preparing to unpack .../053-libblas3_3.12.0-3_arm64.deb ... 201s Unpacking libblas3:arm64 (3.12.0-3) ... 201s Selecting previously unselected package libblas-dev:arm64. 201s Preparing to unpack .../054-libblas-dev_3.12.0-3_arm64.deb ... 201s Unpacking libblas-dev:arm64 (3.12.0-3) ... 201s Selecting previously unselected package libsnappy1v5:arm64. 201s Preparing to unpack .../055-libsnappy1v5_1.1.10-1_arm64.deb ... 201s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 201s Selecting previously unselected package libblosc1:arm64. 201s Preparing to unpack .../056-libblosc1_1.21.5+ds-1_arm64.deb ... 201s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 201s Selecting previously unselected package libboost1.83-dev:arm64. 201s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 201s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 203s Selecting previously unselected package libboost-dev:arm64. 203s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 203s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 203s Selecting previously unselected package libbz2-dev:arm64. 203s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 203s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 203s Selecting previously unselected package libpixman-1-0:arm64. 203s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 203s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 203s Selecting previously unselected package libxcb-render0:arm64. 203s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 203s Unpacking libxcb-render0:arm64 (1.15-1) ... 203s Selecting previously unselected package libxcb-shm0:arm64. 203s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 203s Unpacking libxcb-shm0:arm64 (1.15-1) ... 203s Selecting previously unselected package libxrender1:arm64. 203s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 203s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 203s Selecting previously unselected package libcairo2:arm64. 203s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 203s Unpacking libcairo2:arm64 (1.18.0-1) ... 203s Selecting previously unselected package libcurl4-openssl-dev:arm64. 203s Preparing to unpack .../065-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 203s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 203s Selecting previously unselected package libdatrie1:arm64. 203s Preparing to unpack .../066-libdatrie1_0.2.13-3_arm64.deb ... 203s Unpacking libdatrie1:arm64 (0.2.13-3) ... 203s Selecting previously unselected package libdeflate0:arm64. 203s Preparing to unpack .../067-libdeflate0_1.19-1_arm64.deb ... 203s Unpacking libdeflate0:arm64 (1.19-1) ... 203s Selecting previously unselected package libgraphite2-3:arm64. 203s Preparing to unpack .../068-libgraphite2-3_1.3.14-2_arm64.deb ... 203s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 203s Selecting previously unselected package libharfbuzz0b:arm64. 203s Preparing to unpack .../069-libharfbuzz0b_8.3.0-2_arm64.deb ... 203s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 203s Selecting previously unselected package libsz2:arm64. 203s Preparing to unpack .../070-libsz2_1.1.2-1_arm64.deb ... 203s Unpacking libsz2:arm64 (1.1.2-1) ... 203s Selecting previously unselected package libhdf5-103-1t64:arm64. 203s Preparing to unpack .../071-libhdf5-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package libhdf5-cpp-103-1t64:arm64. 203s Preparing to unpack .../072-libhdf5-cpp-103-1t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package libhdf5-fortran-102t64:arm64. 203s Preparing to unpack .../073-libhdf5-fortran-102t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-fortran-102t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package libhdf5-hl-100t64:arm64. 203s Preparing to unpack .../074-libhdf5-hl-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-hl-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package libhdf5-hl-fortran-100t64:arm64. 203s Preparing to unpack .../075-libhdf5-hl-fortran-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package libhdf5-hl-cpp-100t64:arm64. 203s Preparing to unpack .../076-libhdf5-hl-cpp-100t64_1.10.10+repack-3.1ubuntu3_arm64.deb ... 203s Unpacking libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-3.1ubuntu3) ... 203s Selecting previously unselected package zlib1g-dev:arm64. 203s Preparing to unpack .../077-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 203s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8:arm64. 203s Preparing to unpack .../078-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 203s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 203s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 203s Preparing to unpack .../079-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 203s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 203s Selecting previously unselected package libjpeg8:arm64. 203s Preparing to unpack .../080-libjpeg8_8c-2ubuntu11_arm64.deb ... 203s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 203s Selecting previously unselected package libjpeg8-dev:arm64. 203s Preparing to unpack .../081-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 203s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 203s Selecting previously unselected package libjpeg-dev:arm64. 203s Preparing to unpack .../082-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 203s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 203s Selecting previously unselected package libaec-dev:arm64. 204s Preparing to unpack .../083-libaec-dev_1.1.2-1_arm64.deb ... 204s Unpacking libaec-dev:arm64 (1.1.2-1) ... 204s Selecting previously unselected package libssl-dev:arm64. 204s Preparing to unpack .../084-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 204s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 204s Selecting previously unselected package libhdf5-dev. 204s Preparing to unpack .../085-libhdf5-dev_1.10.10+repack-3.1ubuntu3_arm64.deb ... 204s Unpacking libhdf5-dev (1.10.10+repack-3.1ubuntu3) ... 204s Selecting previously unselected package x11-common. 204s Preparing to unpack .../086-x11-common_1%3a7.7+23ubuntu2_all.deb ... 204s Unpacking x11-common (1:7.7+23ubuntu2) ... 204s Selecting previously unselected package libice6:arm64. 204s Preparing to unpack .../087-libice6_2%3a1.0.10-1build2_arm64.deb ... 204s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 204s Selecting previously unselected package libicu-dev:arm64. 204s Preparing to unpack .../088-libicu-dev_74.2-1ubuntu1_arm64.deb ... 204s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 204s Selecting previously unselected package libjs-bootstrap. 204s Preparing to unpack .../089-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 204s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 204s Selecting previously unselected package libjs-popper.js. 204s Preparing to unpack .../090-libjs-popper.js_1.16.1+ds-6_all.deb ... 204s Unpacking libjs-popper.js (1.16.1+ds-6) ... 204s Selecting previously unselected package libjs-bootstrap4. 204s Preparing to unpack .../091-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 204s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 204s Selecting previously unselected package libjs-d3. 204s Preparing to unpack .../092-libjs-d3_3.5.17-4_all.deb ... 204s Unpacking libjs-d3 (3.5.17-4) ... 204s Selecting previously unselected package libjs-es5-shim. 204s Preparing to unpack .../093-libjs-es5-shim_4.6.7-2_all.deb ... 204s Unpacking libjs-es5-shim (4.6.7-2) ... 204s Selecting previously unselected package libjs-highlight.js. 204s Preparing to unpack .../094-libjs-highlight.js_9.18.5+dfsg1-2_all.deb ... 204s Unpacking libjs-highlight.js (9.18.5+dfsg1-2) ... 204s Selecting previously unselected package libjs-jquery. 204s Preparing to unpack .../095-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... 204s Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... 204s Selecting previously unselected package libjs-jquery-datatables. 204s Preparing to unpack .../096-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 204s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 205s Selecting previously unselected package libjs-jquery-datatables-extensions. 205s Preparing to unpack .../097-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5_all.deb ... 205s Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-5) ... 205s Selecting previously unselected package libjs-sifter.js. 205s Preparing to unpack .../098-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 205s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 205s Selecting previously unselected package libjs-microplugin.js. 205s 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unselected package libpkgconf3:arm64. 206s Preparing to unpack .../120-libpkgconf3_1.8.1-2_arm64.deb ... 206s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 206s Selecting previously unselected package libpng-dev:arm64. 206s Preparing to unpack .../121-libpng-dev_1.6.43-1_arm64.deb ... 206s Unpacking libpng-dev:arm64 (1.6.43-1) ... 206s Selecting previously unselected package libreadline-dev:arm64. 206s Preparing to unpack .../122-libreadline-dev_8.2-3_arm64.deb ... 206s Unpacking libreadline-dev:arm64 (8.2-3) ... 206s Selecting previously unselected package libsharpyuv0:arm64. 206s Preparing to unpack .../123-libsharpyuv0_1.3.2-0.4_arm64.deb ... 206s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libsm6:arm64. 206s Preparing to unpack .../124-libsm6_2%3a1.2.3-1build2_arm64.deb ... 206s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 206s Selecting previously unselected package libtcl8.6:arm64. 206s Preparing to unpack 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unpack .../136-pandoc-data_3.1.3-1_all.deb ... 206s Unpacking pandoc-data (3.1.3-1) ... 206s Selecting previously unselected package pandoc. 206s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 206s Unpacking pandoc (3.1.3+ds-2) ... 207s Selecting previously unselected package pkgconf-bin. 207s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 207s Unpacking pkgconf-bin (1.8.1-2) ... 207s Selecting previously unselected package pkgconf:arm64. 207s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 207s Unpacking pkgconf:arm64 (1.8.1-2) ... 207s Selecting previously unselected package pkg-config:arm64. 207s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 207s Unpacking pkg-config:arm64 (1.8.1-2) ... 207s Selecting previously unselected package zip. 207s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 207s Unpacking zip (3.0-13) ... 207s Selecting previously unselected package unzip. 207s Preparing to unpack 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Selecting previously unselected package r-bioc-biocgenerics. 208s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 208s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 208s Selecting previously unselected package r-bioc-biobase. 208s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 208s Unpacking r-bioc-biobase (2.62.0-1) ... 208s Selecting previously unselected package r-bioc-s4vectors. 208s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 208s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 208s Selecting previously unselected package r-bioc-iranges. 208s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 208s Unpacking r-bioc-iranges (2.36.0-1) ... 208s Selecting previously unselected package r-cran-dbi. 208s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 208s Unpacking r-cran-dbi (1.2.2-1) ... 208s Selecting previously unselected package r-cran-bit. 208s Preparing to unpack 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previously unselected package r-cran-plogr. 209s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 209s Unpacking r-cran-plogr (0.2.0-3build1) ... 209s Selecting previously unselected package r-cran-cpp11. 209s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 209s Unpacking r-cran-cpp11 (0.4.7-1) ... 209s Selecting previously unselected package r-cran-rsqlite. 209s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 209s Unpacking r-cran-rsqlite (2.3.4-1) ... 209s Selecting previously unselected package r-cran-curl. 209s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 209s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 209s Selecting previously unselected package r-cran-jsonlite. 209s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 209s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 209s Selecting previously unselected package r-cran-mime. 209s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 209s Unpacking r-cran-mime (0.12-1) ... 209s Selecting previously unselected package r-cran-sys. 209s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 209s Unpacking r-cran-sys (3.4.2-1) ... 209s Selecting previously unselected package r-cran-askpass. 209s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 209s Unpacking r-cran-askpass (1.2.0-1) ... 209s Selecting previously unselected package r-cran-openssl. 209s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 209s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 209s Selecting previously unselected package r-cran-r6. 209s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 209s Unpacking r-cran-r6 (2.5.1-1) ... 209s Selecting previously unselected package r-cran-httr. 209s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 209s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 209s Selecting previously unselected package r-cran-png. 209s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 209s Unpacking r-cran-png (0.1-8-1) ... 209s Selecting previously unselected package r-bioc-zlibbioc. 209s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 209s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 209s Selecting previously unselected package r-bioc-xvector. 209s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 209s Unpacking r-bioc-xvector (0.42.0-1) ... 209s Selecting previously unselected package r-cran-bitops. 209s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 209s Unpacking r-cran-bitops (1.0-7-1) ... 209s Selecting previously unselected package r-cran-rcurl. 209s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 209s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 209s Selecting previously unselected package r-bioc-genomeinfodbdata. 209s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 209s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 210s Selecting previously unselected package r-bioc-genomeinfodb. 210s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 210s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 210s Selecting previously unselected package r-cran-crayon. 210s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 210s Unpacking r-cran-crayon (1.5.2-1) ... 210s Selecting previously unselected package r-bioc-biostrings. 210s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 210s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 210s Selecting previously unselected package r-bioc-keggrest. 210s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-annotationdbi. 210s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 210s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 210s Selecting previously unselected package r-cran-xml. 210s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 210s Unpacking r-cran-xml (3.99-0.16.1-1) ... 210s Selecting previously unselected package r-cran-xtable. 210s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 210s Unpacking r-cran-xtable (1:1.8-4-2) ... 210s Selecting previously unselected package r-bioc-annotate. 210s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 210s Selecting previously unselected package r-cran-generics. 210s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 210s Unpacking r-cran-generics (0.1.3-1) ... 210s Selecting previously unselected package r-cran-magrittr. 210s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_arm64.deb ... 210s Unpacking r-cran-magrittr (2.0.3-1) ... 210s Selecting previously unselected package r-cran-fansi. 210s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_arm64.deb ... 210s Unpacking r-cran-fansi (1.0.5-1) ... 210s Selecting previously unselected package r-cran-utf8. 210s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_arm64.deb ... 210s Unpacking r-cran-utf8 (1.2.4-1) ... 210s Selecting previously unselected package r-cran-pillar. 210s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 210s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 210s Selecting previously unselected package r-cran-tibble. 210s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 210s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 210s Selecting previously unselected package r-cran-withr. 210s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 210s Unpacking r-cran-withr (2.5.0-1) ... 210s Selecting previously unselected package r-cran-tidyselect. 210s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 210s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 210s Selecting previously unselected package r-cran-dplyr. 210s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_arm64.deb ... 210s Unpacking r-cran-dplyr (1.1.4-1) ... 210s Selecting previously unselected package r-cran-purrr. 210s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_arm64.deb ... 210s Unpacking r-cran-purrr (1.0.2-1) ... 211s Selecting previously unselected package r-cran-stringi. 211s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_arm64.deb ... 211s Unpacking r-cran-stringi (1.8.3-1) ... 211s Selecting previously unselected package r-cran-stringr. 211s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 211s Unpacking r-cran-stringr (1.5.1-1) ... 211s Selecting previously unselected package r-cran-tidyr. 211s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_arm64.deb ... 211s Unpacking r-cran-tidyr (1.3.1-1) ... 211s Selecting previously unselected package r-cran-dbplyr. 211s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 211s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-filelock. 211s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_arm64.deb ... 211s Unpacking r-cran-filelock (1.0.3-1) ... 211s Selecting previously unselected package r-bioc-biocfilecache. 211s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 211s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 211s Selecting previously unselected package r-cran-biocmanager. 211s Preparing to unpack .../206-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 211s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 211s Selecting previously unselected package r-bioc-biocversion. 211s Preparing to unpack .../207-r-bioc-biocversion_3.18.1-1_all.deb ... 211s Unpacking r-bioc-biocversion (3.18.1-1) ... 211s Selecting previously unselected package r-cran-rappdirs. 211s Preparing to unpack .../208-r-cran-rappdirs_0.3.3-1_arm64.deb ... 211s Unpacking r-cran-rappdirs (0.3.3-1) ... 211s Selecting previously unselected package r-cran-yaml. 211s Preparing to unpack .../209-r-cran-yaml_2.3.8-1_arm64.deb ... 211s Unpacking r-cran-yaml (2.3.8-1) ... 211s Selecting previously unselected package r-cran-littler. 211s Preparing to unpack .../210-r-cran-littler_0.3.19-1_arm64.deb ... 211s Unpacking r-cran-littler (0.3.19-1) ... 211s Selecting previously unselected package r-cran-pkgkitten. 211s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ... 211s Unpacking r-cran-pkgkitten (0.2.3-1) ... 211s Selecting previously unselected package r-cran-rcpp. 211s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_arm64.deb ... 211s Unpacking r-cran-rcpp (1.0.12-1) ... 211s Selecting previously unselected package r-cran-later. 211s Preparing to unpack .../213-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 211s Unpacking r-cran-later (1.3.2+dfsg-1) ... 211s Selecting previously unselected package r-cran-promises. 211s Preparing to unpack .../214-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 211s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 211s Selecting previously unselected package r-cran-httpuv. 211s Preparing to unpack .../215-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 211s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 211s Selecting previously unselected package r-cran-base64enc. 211s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_arm64.deb ... 211s Unpacking r-cran-base64enc (0.1-3-3) ... 211s Selecting previously unselected package r-cran-digest. 211s Preparing to unpack .../217-r-cran-digest_0.6.34-1_arm64.deb ... 211s Unpacking r-cran-digest (0.6.34-1) ... 211s Selecting previously unselected package r-cran-ellipsis. 211s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_arm64.deb ... 211s Unpacking r-cran-ellipsis (0.3.2-2) ... 211s Selecting previously unselected package r-cran-htmltools. 211s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_arm64.deb ... 211s Unpacking r-cran-htmltools (0.5.7-1) ... 211s Selecting previously unselected package r-cran-fontawesome. 211s Preparing to unpack .../220-r-cran-fontawesome_0.5.2-1_all.deb ... 211s Unpacking r-cran-fontawesome (0.5.2-1) ... 211s Selecting previously unselected package r-cran-sourcetools. 212s Preparing to unpack .../221-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 212s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 212s Selecting previously unselected package r-cran-commonmark. 212s Preparing to unpack .../222-r-cran-commonmark_1.9.1-1_arm64.deb ... 212s Unpacking r-cran-commonmark (1.9.1-1) ... 212s Selecting previously unselected package r-cran-jquerylib. 212s Preparing to unpack .../223-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 212s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 212s Selecting previously unselected package r-cran-fs. 212s Preparing to unpack .../224-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 212s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 212s Selecting previously unselected package r-cran-sass. 212s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 212s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 212s Selecting previously unselected package r-cran-bslib. 212s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 212s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 212s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 212s Preparing to unpack .../227-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 212s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 212s Selecting previously unselected package r-cran-shiny. 212s Preparing to unpack .../228-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 212s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-evaluate. 212s Preparing to unpack .../229-r-cran-evaluate_0.23-1_all.deb ... 212s Unpacking r-cran-evaluate (0.23-1) ... 212s Selecting previously unselected package r-cran-xfun. 212s Preparing to unpack .../230-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 212s Unpacking r-cran-xfun (0.41+dfsg-1) ... 212s Selecting previously unselected package r-cran-highr. 212s Preparing to unpack .../231-r-cran-highr_0.10+dfsg-1_all.deb ... 212s Unpacking r-cran-highr (0.10+dfsg-1) ... 212s Selecting previously unselected package libjs-mathjax. 212s Preparing to unpack .../232-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 212s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 213s Selecting previously unselected package r-cran-knitr. 213s Preparing to unpack .../233-r-cran-knitr_1.45+dfsg-1_all.deb ... 213s Unpacking r-cran-knitr (1.45+dfsg-1) ... 213s Selecting previously unselected package r-cran-tinytex. 213s Preparing to unpack .../234-r-cran-tinytex_0.49-1_all.deb ... 213s Unpacking r-cran-tinytex (0.49-1) ... 213s Selecting previously unselected package libjs-modernizr. 213s Preparing to unpack .../235-libjs-modernizr_2.6.2+ds1-5_all.deb ... 213s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 213s Selecting previously unselected package r-cran-rmarkdown. 213s Preparing to unpack .../236-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 213s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 213s Selecting previously unselected package r-cran-htmlwidgets. 213s Preparing to unpack .../237-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 213s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 213s Selecting previously unselected package r-cran-lazyeval. 213s Preparing to unpack .../238-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 213s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 213s Selecting previously unselected package r-cran-crosstalk. 213s Preparing to unpack .../239-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 213s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 213s Selecting previously unselected package r-cran-dt. 213s Preparing to unpack .../240-r-cran-dt_0.31+dfsg-1_all.deb ... 213s Unpacking r-cran-dt (0.31+dfsg-1) ... 213s Selecting previously unselected package r-bioc-interactivedisplaybase. 213s Preparing to unpack .../241-r-bioc-interactivedisplaybase_1.40.0+dfsg-1_all.deb ... 213s Unpacking r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 213s Selecting previously unselected package r-bioc-annotationhub. 213s Preparing to unpack .../242-r-bioc-annotationhub_3.10.0+dfsg-1_all.deb ... 213s Unpacking r-bioc-annotationhub (3.10.0+dfsg-1) ... 213s Selecting previously unselected package r-bioc-biocio. 213s Preparing to unpack .../243-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 213s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-formatr. 213s Preparing to unpack .../244-r-cran-formatr_1.14-1_all.deb ... 213s Unpacking r-cran-formatr (1.14-1) ... 213s Selecting previously unselected package r-cran-lambda.r. 213s Preparing to unpack .../245-r-cran-lambda.r_1.2.4-2build1_all.deb ... 213s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 213s Selecting previously unselected package r-cran-futile.options. 213s Preparing to unpack .../246-r-cran-futile.options_1.0.1-3build1_all.deb ... 213s Unpacking r-cran-futile.options (1.0.1-3build1) ... 213s Selecting previously unselected package r-cran-futile.logger. 213s Preparing to unpack .../247-r-cran-futile.logger_1.4.3-4build1_all.deb ... 213s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 213s Selecting previously unselected package r-cran-snow. 213s Preparing to unpack .../248-r-cran-snow_1%3a0.4.4-2_all.deb ... 213s Unpacking r-cran-snow (1:0.4.4-2) ... 213s Selecting previously unselected package r-cran-codetools. 213s Preparing to unpack .../249-r-cran-codetools_0.2-19-1_all.deb ... 213s Unpacking r-cran-codetools (0.2-19-1) ... 213s Selecting previously unselected package r-cran-bh. 213s Preparing to unpack .../250-r-cran-bh_1.84.0-1_all.deb ... 213s Unpacking r-cran-bh (1.84.0-1) ... 213s Selecting previously unselected package r-bioc-biocparallel. 213s Preparing to unpack .../251-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 213s Unpacking r-bioc-biocparallel (1.36.0-1) ... 214s Selecting previously unselected package r-cran-hms. 214s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 214s Unpacking r-cran-hms (1.1.3-1) ... 214s Selecting previously unselected package r-cran-prettyunits. 214s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 214s Unpacking r-cran-prettyunits (1.2.0-1) ... 214s Selecting previously unselected package r-cran-progress. 214s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 214s Unpacking r-cran-progress (1.2.3-1) ... 214s Selecting previously unselected package r-cran-xml2. 214s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 214s Unpacking r-cran-xml2 (1.3.6-1) ... 214s Selecting previously unselected package r-bioc-biomart. 214s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 214s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 214s Selecting previously unselected package r-cran-lattice. 214s Preparing to unpack .../257-r-cran-lattice_0.22-5-1_arm64.deb ... 214s Unpacking r-cran-lattice (0.22-5-1) ... 214s Selecting previously unselected package r-cran-matrix. 214s Preparing to unpack .../258-r-cran-matrix_1.6-5-1_arm64.deb ... 214s Unpacking r-cran-matrix (1.6-5-1) ... 214s Selecting previously unselected package r-cran-matrixstats. 214s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 214s Unpacking r-cran-matrixstats (1.2.0-1) ... 214s Selecting previously unselected package r-bioc-matrixgenerics. 214s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 214s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 214s Selecting previously unselected package r-cran-abind. 214s Preparing to unpack .../261-r-cran-abind_1.4-5-2_all.deb ... 214s Unpacking r-cran-abind (1.4-5-2) ... 214s Selecting previously unselected package r-bioc-s4arrays. 214s Preparing to unpack .../262-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 214s Selecting previously unselected package r-bioc-sparsearray. 214s Preparing to unpack .../263-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 214s Selecting previously unselected package r-bioc-delayedarray. 214s Preparing to unpack .../264-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 214s Selecting previously unselected package r-bioc-sparsematrixstats. 214s Preparing to unpack .../265-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 214s Selecting previously unselected package r-bioc-delayedmatrixstats. 214s Preparing to unpack .../266-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 214s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 214s Selecting previously unselected package r-bioc-experimenthub. 214s Preparing to unpack .../267-r-bioc-experimenthub_2.10.0+ds-1_all.deb ... 214s Unpacking r-bioc-experimenthub (2.10.0+ds-1) ... 214s Selecting previously unselected package r-cran-survival. 214s Preparing to unpack .../268-r-cran-survival_3.5-8-1_arm64.deb ... 214s Unpacking r-cran-survival (3.5-8-1) ... 214s Selecting previously unselected package r-bioc-genefilter. 214s Preparing to unpack .../269-r-bioc-genefilter_1.84.0-1_arm64.deb ... 214s Unpacking r-bioc-genefilter (1.84.0-1) ... 214s Selecting previously unselected package r-bioc-genomicranges. 214s Preparing to unpack .../270-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 214s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 215s Selecting previously unselected package r-bioc-summarizedexperiment. 215s Preparing to unpack .../271-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 215s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 215s Selecting previously unselected package r-bioc-rhtslib. 215s Preparing to unpack .../272-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 215s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 215s Selecting previously unselected package r-bioc-rsamtools. 215s Preparing to unpack .../273-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 215s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 215s Selecting previously unselected package r-bioc-genomicalignments. 215s Preparing to unpack .../274-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 215s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 215s Selecting previously unselected package r-cran-rjson. 215s Preparing to unpack .../275-r-cran-rjson_0.2.21-1_arm64.deb ... 215s Unpacking r-cran-rjson (0.2.21-1) ... 215s Selecting previously unselected package r-cran-restfulr. 215s Preparing to unpack .../276-r-cran-restfulr_0.0.15-1_arm64.deb ... 215s Unpacking r-cran-restfulr (0.0.15-1) ... 215s Selecting previously unselected package r-bioc-rtracklayer. 215s Preparing to unpack .../277-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 215s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 215s Selecting previously unselected package r-bioc-genomicfeatures. 215s Preparing to unpack .../278-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 215s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 215s Selecting previously unselected package r-bioc-rhdf5lib. 215s Preparing to unpack .../279-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 215s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 215s Selecting previously unselected package r-bioc-rhdf5filters. 215s Preparing to unpack .../280-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 215s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 215s Selecting previously unselected package r-bioc-rhdf5. 215s Preparing to unpack .../281-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 215s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 215s Selecting previously unselected package r-bioc-hdf5array. 215s Preparing to unpack .../282-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 215s Unpacking r-bioc-hdf5array (1.30.1-1) ... 215s Selecting previously unselected package r-bioc-singlecellexperiment. 215s Preparing to unpack .../283-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 215s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 215s Selecting previously unselected package r-cran-runit. 215s Preparing to unpack .../284-r-cran-runit_0.4.32-3_all.deb ... 215s Unpacking r-cran-runit (0.4.32-3) ... 215s Selecting previously unselected package autopkgtest-satdep. 215s Preparing to unpack .../285-1-autopkgtest-satdep.deb ... 215s Unpacking autopkgtest-satdep (0) ... 215s Setting up libjs-json (0~20221030+~1.0.8-1) ... 215s Setting up javascript-common (11+nmu1) ... 216s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 216s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 216s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 216s Setting up libpaper1:arm64 (1.1.29) ... 216s 216s Creating config file /etc/papersize with new version 216s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 216s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 216s Setting up hdf5-helpers (1.10.10+repack-3.1ubuntu3) ... 216s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 216s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 216s Setting up libdatrie1:arm64 (0.2.13-3) ... 216s Setting up libjs-popper.js (1.16.1+ds-6) ... 216s Setting up libxcb-render0:arm64 (1.15-1) ... 216s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 216s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 216s Setting up unzip (6.0-28ubuntu3) ... 216s Setting up x11-common (1:7.7+23ubuntu2) ... 216s Setting up node-html5shiv (3.7.3+dfsg-5) ... 216s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 216s Setting up libdeflate0:arm64 (1.19-1) ... 216s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 216s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 216s Setting up libxcb-shm0:arm64 (1.15-1) ... 216s Setting up libpaper-utils (1.1.29) ... 216s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 216s Setting up libjs-modernizr (2.6.2+ds1-5) ... 216s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 216s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 216s Setting up libaec0:arm64 (1.1.2-1) ... 216s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 216s Setting up 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/usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 219s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 219s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 219s Setting up r-cran-bitops (1.0-7-1) ... 219s Setting up r-bioc-biocversion (3.18.1-1) ... 219s Setting up r-cran-bit64 (4.0.5-1) ... 219s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 219s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 219s Setting up r-cran-askpass (1.2.0-1) ... 219s Setting up r-cran-fastmap (1.1.1-1) ... 219s Setting up r-cran-png (0.1-8-1) ... 219s Setting up r-bioc-biobase (2.62.0-1) ... 219s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 219s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 219s Setting up r-cran-utf8 (1.2.4-1) ... 219s Setting up r-cran-stringi (1.8.3-1) ... 219s Setting up r-cran-cpp11 (0.4.7-1) ... 219s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 219s 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... 219s Setting up r-cran-dplyr (1.1.4-1) ... 219s Setting up r-cran-rsqlite (2.3.4-1) ... 219s Setting up r-cran-progress (1.2.3-1) ... 219s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 219s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 219s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 219s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 219s Setting up r-cran-fontawesome (0.5.2-1) ... 219s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 219s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 219s Setting up r-cran-tidyr (1.3.1-1) ... 219s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 219s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 219s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 219s Setting up r-bioc-hdf5array (1.30.1-1) ... 219s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 219s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 219s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 219s Setting up r-bioc-annotationdbi (1.64.1-1) ... 219s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 219s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 219s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 219s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 219s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 219s Setting up r-bioc-genefilter (1.84.0-1) ... 219s Setting up r-bioc-genomicalignments (1.38.2-1) ... 219s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 219s Setting up r-bioc-rtracklayer (1.62.0-1) ... 219s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 219s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 219s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 219s Setting up r-cran-dt (0.31+dfsg-1) ... 219s Setting up r-bioc-interactivedisplaybase (1.40.0+dfsg-1) ... 219s Setting up r-bioc-annotationhub (3.10.0+dfsg-1) ... 219s Setting up r-bioc-experimenthub (2.10.0+ds-1) ... 219s Setting up autopkgtest-satdep (0) ... 219s Processing triggers for man-db (2.12.0-3) ... 220s Processing triggers for install-info (7.1-3) ... 220s Processing triggers for libc-bin (2.39-0ubuntu2) ... 233s (Reading database ... 115905 files and directories currently installed.) 233s Removing autopkgtest-satdep (0) ... 234s autopkgtest [17:08:03]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 234s autopkgtest [17:08:03]: test pkg-r-autopkgtest: [----------------------- 234s Test: Try to load the R library HDF5Array 235s 235s R version 4.3.2 (2023-10-31) -- "Eye Holes" 235s Copyright (C) 2023 The R Foundation for Statistical Computing 235s Platform: aarch64-unknown-linux-gnu (64-bit) 235s 235s R is free software and comes with ABSOLUTELY NO WARRANTY. 235s You are welcome to redistribute it under certain conditions. 235s Type 'license()' or 'licence()' for distribution details. 235s 235s R is a collaborative project with many contributors. 235s Type 'contributors()' for more information and 235s 'citation()' on how to cite R or R packages in publications. 235s 235s Type 'demo()' for some demos, 'help()' for on-line help, or 235s 'help.start()' for an HTML browser interface to help. 235s Type 'q()' to quit R. 235s 235s > library('HDF5Array') 235s Loading required package: DelayedArray 235s Loading required package: stats4 235s Loading required package: Matrix 236s Loading required package: BiocGenerics 236s 236s Attaching package: ‘BiocGenerics’ 236s 236s The following objects are masked from ‘package:stats’: 236s 236s IQR, mad, sd, var, xtabs 236s 236s The following objects are masked from ‘package:base’: 236s 236s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 236s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 236s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 236s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 236s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 236s table, tapply, union, unique, unsplit, which.max, which.min 236s 236s Loading required package: MatrixGenerics 236s Loading required package: matrixStats 236s 236s Attaching package: ‘MatrixGenerics’ 236s 236s The following objects are masked from ‘package:matrixStats’: 236s 236s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 236s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 236s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 236s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 236s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 236s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 236s colWeightedMeans, colWeightedMedians, colWeightedSds, 236s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 236s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 236s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 236s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 236s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 236s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 236s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 236s rowWeightedSds, rowWeightedVars 236s 236s Loading required package: S4Vectors 237s 237s Attaching package: ‘S4Vectors’ 237s 237s The following objects are masked from ‘package:Matrix’: 237s 237s expand, unname 237s 237s The following object is masked from ‘package:utils’: 237s 237s findMatches 237s 237s The following objects are masked from ‘package:base’: 237s 237s expand.grid, I, unname 237s 237s Loading required package: IRanges 238s Loading required package: S4Arrays 238s Loading required package: abind 238s 238s Attaching package: ‘S4Arrays’ 238s 238s The following object is masked from ‘package:abind’: 238s 238s abind 238s 238s The following object is masked from ‘package:base’: 238s 238s rowsum 238s 238s Loading required package: SparseArray 240s 240s Attaching package: ‘DelayedArray’ 240s 240s The following objects are masked from ‘package:base’: 240s 240s apply, scale, sweep 240s 240s Loading required package: rhdf5 240s 240s Attaching package: ‘HDF5Array’ 240s 240s The following object is masked from ‘package:rhdf5’: 240s 240s h5ls 240s 240s > 240s > 240s Other tests are currently unsupported! 240s They will be progressively added. 241s autopkgtest [17:08:10]: test pkg-r-autopkgtest: -----------------------] 241s autopkgtest [17:08:10]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 241s pkg-r-autopkgtest PASS 241s autopkgtest [17:08:10]: @@@@@@@@@@@@@@@@@@@@ summary 241s pkg-r-autopkgtest PASS 253s Creating nova instance adt-noble-arm64-r-bioc-hdf5array-20240316-170409-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...