0s autopkgtest [13:43:35]: starting date and time: 2024-03-16 13:43:35+0000 0s autopkgtest [13:43:35]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:43:35]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.rj4d_1t4/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-gviz --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-10.secgroup --name adt-noble-arm64-r-bioc-gviz-20240316-134335-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 62s autopkgtest [13:44:37]: testbed dpkg architecture: arm64 62s autopkgtest [13:44:37]: testbed apt version: 2.7.12 62s autopkgtest [13:44:37]: @@@@@@@@@@@@@@@@@@@@ test bed setup 63s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 63s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 63s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 63s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 63s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 63s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 64s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 64s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 64s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 64s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 64s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 64s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 64s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 65s Fetched 9092 kB in 2s (5575 kB/s) 65s Reading package lists... 68s Reading package lists... 68s Building dependency tree... 68s Reading state information... 69s Calculating upgrade... 69s The following packages will be REMOVED: 69s libssl3 69s The following NEW packages will be installed: 69s libssl3t64 69s The following packages have been kept back: 69s curl 69s The following packages will be upgraded: 69s openssl ubuntu-minimal ubuntu-standard 69s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 69s Need to get 2775 kB of archives. 69s After this operation, 72.7 kB of additional disk space will be used. 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 70s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 70s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 70s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 70s Fetched 2775 kB in 1s (3969 kB/s) 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 71s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 71s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 71s wget depends on libssl3 (>= 3.0.0). 71s u-boot-tools depends on libssl3 (>= 3.0.0). 71s tnftp depends on libssl3 (>= 3.0.0). 71s tcpdump depends on libssl3 (>= 3.0.0). 71s systemd-resolved depends on libssl3 (>= 3.0.0). 71s systemd depends on libssl3 (>= 3.0.0). 71s sudo depends on libssl3 (>= 3.0.0). 71s sbsigntool depends on libssl3 (>= 3.0.0). 71s rsync depends on libssl3 (>= 3.0.0). 71s python3-cryptography depends on libssl3 (>= 3.0.0). 71s openssh-server depends on libssl3 (>= 3.0.10). 71s openssh-client depends on libssl3 (>= 3.0.10). 71s mtd-utils depends on libssl3 (>= 3.0.0). 71s mokutil depends on libssl3 (>= 3.0.0). 71s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 71s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 71s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 71s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 71s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 71s libnvme1 depends on libssl3 (>= 3.0.0). 71s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 71s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 71s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 71s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 71s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 71s kmod depends on libssl3 (>= 3.0.0). 71s dhcpcd-base depends on libssl3 (>= 3.0.0). 71s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 71s 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 71s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 71s Selecting previously unselected package libssl3t64:arm64. 71s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 71s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 71s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 71s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 71s Unpacking ubuntu-minimal (1.536) over (1.535) ... 72s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 72s Unpacking ubuntu-standard (1.536) over (1.535) ... 72s Setting up ubuntu-minimal (1.536) ... 72s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 72s Setting up ubuntu-standard (1.536) ... 72s Setting up openssl (3.0.13-0ubuntu1) ... 72s Processing triggers for man-db (2.12.0-3) ... 73s Processing triggers for libc-bin (2.39-0ubuntu2) ... 73s Reading package lists... 73s Building dependency tree... 73s Reading state information... 74s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 75s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 75s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 75s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 75s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 76s Reading package lists... 76s Reading package lists... 76s Building dependency tree... 76s Reading state information... 77s Calculating upgrade... 77s The following packages have been kept back: 77s curl 77s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 77s Reading package lists... 77s Building dependency tree... 77s Reading state information... 78s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 81s autopkgtest [13:44:56]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 81s autopkgtest [13:44:56]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gviz 83s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (dsc) [2484 B] 83s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (tar) [3824 kB] 83s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gviz 1.46.1+dfsg-1 (diff) [7136 B] 83s gpgv: Signature made Fri Dec 8 14:53:02 2023 UTC 83s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 83s gpgv: issuer "tille@debian.org" 83s gpgv: Can't check signature: No public key 83s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gviz_1.46.1+dfsg-1.dsc: no acceptable signature found 83s autopkgtest [13:44:58]: testing package r-bioc-gviz version 1.46.1+dfsg-1 84s autopkgtest [13:44:59]: build not needed 85s autopkgtest [13:45:00]: test pkg-r-autopkgtest: preparing testbed 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Starting pkgProblemResolver with broken count: 0 88s Starting 2 pkgProblemResolver with broken count: 0 88s Done 88s The following additional packages will be installed: 88s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 88s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 88s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 88s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 88s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 88s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 88s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 88s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 88s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 88s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 88s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 88s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 88s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 88s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 88s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 88s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 88s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 88s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 88s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 88s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 88s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 88s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 88s libpotrace0 libpsl5t64 libptexenc1 libreadline-dev libsharpyuv0 libsm6 88s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 88s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 88s libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 88s libxss1 libxt6 libzzip-0-13 linux-libc-dev node-bootstrap-sass 88s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 88s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 88s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 88s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 88s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 88s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 88s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 88s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 88s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 88s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 88s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 88s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 88s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 88s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 88s r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron r-cran-cli 88s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 88s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 88s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 88s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 88s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 88s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 88s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 88s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 88s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 88s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 88s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 88s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 88s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 88s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 88s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 88s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 88s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 88s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 88s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 88s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 88s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 88s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 88s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 88s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 88s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 88s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 88s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 88s zlib1g-dev 88s Suggested packages: 88s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 88s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 88s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 88s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 88s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 88s libboost-context1.83-dev libboost-contract1.83-dev 88s libboost-coroutine1.83-dev libboost-date-time1.83-dev 88s libboost-exception1.83-dev libboost-fiber1.83-dev 88s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 88s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 88s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 88s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 88s libboost-numpy1.83-dev libboost-program-options1.83-dev 88s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 88s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 88s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 88s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 88s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 88s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 88s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 88s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 88s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 88s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 88s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 88s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 88s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-all 88s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 88s r-cran-doparallel r-bioc-shortread r-cran-batchtools r-cran-mockery 88s r-cran-webmockr r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 88s r-bioc-delayedmatrixstats r-bioc-ggbio r-bioc-annotationhub r-cran-r.utils 88s r-bioc-edger r-cran-markdown r-bioc-dexseq r-bioc-sparsematrixstats 88s r-bioc-limma r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff 88s r-cran-covr r-cran-spelling r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm 88s r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip r-cran-lubridate 88s r-cran-sp r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 88s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 88s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench 88s r-cran-here r-cran-plm r-cran-zoo debhelper ghostscript gv 88s | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 88s hintview texlive-latex-base-doc wp2latex 88s Recommended packages: 88s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 88s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 88s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 88s r-cran-covr r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-fastmatch 88s r-cran-devtools r-cran-tinytest r-cran-whoami r-cran-bench r-cran-decor 88s r-cran-lobstr r-cran-spelling r-cran-webutils r-cran-r.utils r-cran-xts 88s r-cran-nanotime r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-broom 88s r-cran-rmysql r-cran-unitizer r-cran-rsvg r-cran-hexbin r-cran-mapproj 88s r-cran-maps r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg 88s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-cairo r-cran-markdown 88s r-cran-readr r-cran-r.rsp r-cran-gridsvg r-cran-magick r-cran-reticulate 88s r-cran-rgl r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 88s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 88s r-cran-webfakes r-cran-future r-cran-pingr r-cran-runit r-cran-usethis 88s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-rvest r-cran-formattable 88s r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 88s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 88s x11-xserver-utils 88s The following packages will be REMOVED: 88s libcurl4 libpsl5 88s The following NEW packages will be installed: 88s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 88s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 88s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 88s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 88s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 88s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 88s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 88s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 88s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 88s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 88s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 88s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 88s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 88s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 88s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 88s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 88s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 88s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 88s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 88s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 88s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 88s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 88s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libpsl5t64 libptexenc1 88s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 88s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 88s libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 88s libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 88s linux-libc-dev node-bootstrap-sass node-html5shiv node-normalize.css pandoc 88s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 88s r-base-dev r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 88s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 88s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 88s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 88s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 88s r-bioc-genomicranges r-bioc-gviz r-bioc-iranges r-bioc-keggrest 88s r-bioc-matrixgenerics r-bioc-protgenerics r-bioc-rhtslib r-bioc-rsamtools 88s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 88s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 88s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 88s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 88s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib 88s r-cran-cachem r-cran-callr r-cran-checkmate r-cran-chron r-cran-cli 88s r-cran-cluster r-cran-codetools r-cran-colorspace r-cran-commonmark 88s r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi 88s r-cran-dbplyr r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj 88s r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi 88s r-cran-farver r-cran-fastmap r-cran-filelock r-cran-fontawesome 88s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 88s r-cran-futile.options r-cran-generics r-cran-ggplot2 r-cran-glue 88s r-cran-gridextra r-cran-gtable r-cran-highr r-cran-hmisc r-cran-hms 88s r-cran-htmltable r-cran-htmltools r-cran-htmlwidgets r-cran-httpuv 88s r-cran-httr r-cran-interp r-cran-isoband r-cran-jpeg r-cran-jquerylib 88s r-cran-jsonlite r-cran-knitr r-cran-labeling r-cran-lambda.r r-cran-later 88s r-cran-lattice r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle 88s r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 88s r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme 88s r-cran-nnet r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 88s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 88s r-cran-prettyunits r-cran-processx r-cran-progress r-cran-promises r-cran-ps 88s r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp 88s r-cran-rcppeigen r-cran-rcurl r-cran-rematch2 r-cran-restfulr r-cran-rjson 88s r-cran-rlang r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 88s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 88s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 88s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 88s r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite r-cran-waldo 88s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 88s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 88s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 88s zlib1g-dev 88s The following packages will be upgraded: 89s curl 89s 1 upgraded, 333 newly installed, 2 to remove and 0 not upgraded. 89s Need to get 481 MB/481 MB of archives. 89s After this operation, 1434 MB of additional disk space will be used. 89s Get:1 /tmp/autopkgtest.tvsddt/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [760 B] 89s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 89s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 89s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 89s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 89s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 89s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 89s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 89s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 89s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 89s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 89s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 89s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 89s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 90s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 90s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 90s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 90s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 90s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 90s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 90s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 90s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 90s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 90s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 90s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 90s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 90s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 90s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 90s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 90s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 90s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 90s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 90s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 91s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 91s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 91s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 91s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 91s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 91s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 91s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 91s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 91s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 91s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 91s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 91s Get:45 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 91s Get:46 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 91s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 91s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 91s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 91s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 91s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 91s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 91s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 91s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 91s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 91s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 91s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 91s Get:58 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 91s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 91s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 91s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 91s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 91s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 91s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 91s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 91s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 91s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 91s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 91s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 91s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 91s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 91s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 91s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 92s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 92s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 92s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 92s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 92s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 92s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 92s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 92s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 92s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 92s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 92s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 92s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 92s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 92s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 92s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 92s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 92s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 92s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 92s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 92s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 92s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 92s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 92s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 92s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 92s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 92s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 92s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 92s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 92s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 92s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 92s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 93s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 93s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 93s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 93s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 93s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 93s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 93s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 93s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 93s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 93s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 93s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 93s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 93s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 93s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 93s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 93s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 93s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 93s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 93s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 93s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 93s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 93s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 93s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 93s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 93s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 93s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 94s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 94s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 94s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 94s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 94s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 94s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 94s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 94s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 94s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 94s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 94s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 95s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 95s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 95s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 95s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 95s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 95s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 95s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 96s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 96s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 96s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 96s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 96s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 96s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 96s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 96s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 96s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 96s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 96s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 96s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 96s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 96s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 96s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 96s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 96s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 96s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 96s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 97s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 97s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 97s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 97s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 97s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 97s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 97s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 97s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 97s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 97s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 97s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 97s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 97s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 97s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 97s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 97s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 97s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 97s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 97s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 97s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 97s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 97s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 97s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 98s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 98s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 98s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 98s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 98s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 98s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 98s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 98s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 98s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 98s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 98s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 98s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 98s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 98s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 98s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 98s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 98s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 98s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 98s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 99s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 99s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 99s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 99s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 99s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 99s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 99s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 99s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 99s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 99s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 99s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 99s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 99s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 99s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 99s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 99s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 99s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 99s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 99s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 99s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 99s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 99s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 99s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 99s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 99s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 99s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 99s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 99s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 99s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 99s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 99s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 99s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 99s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 99s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 99s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 99s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 99s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 99s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 99s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 100s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 100s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 100s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 100s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 100s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 100s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 101s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 101s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 103s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 103s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 103s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 103s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 103s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 103s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 103s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 103s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 103s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 103s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 103s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 103s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 103s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 104s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 104s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 104s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 104s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 104s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 104s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 104s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 104s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 104s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 104s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 104s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 104s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 104s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 104s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 104s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 104s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 104s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 104s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 104s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 104s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 105s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 105s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 105s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 105s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 105s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 105s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 105s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 105s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 105s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 105s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 105s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 105s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 105s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 105s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 105s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 105s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 105s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 106s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 106s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 106s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 106s Get:310 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1build1 [3636 kB] 106s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 106s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 106s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 106s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 106s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 106s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 106s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 107s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 107s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 107s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 107s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gviz all 1.46.1+dfsg-1 [4855 kB] 107s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 107s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 107s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 107s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 107s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 107s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 107s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 107s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 107s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 107s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 107s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 107s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 107s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 109s Preconfiguring packages ... 109s Fetched 481 MB in 19s (26.0 MB/s) 109s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 109s wget depends on libpsl5 (>= 0.16.0). 109s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 109s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 109s 109s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 109s Removing libpsl5:arm64 (0.21.2-1build1) ... 109s Selecting previously unselected package libpsl5t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74755 files and directories currently installed.) 110s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 110s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 110s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74761 files and directories currently installed.) 110s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 110s Selecting previously unselected package libcurl4t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74756 files and directories currently installed.) 110s Preparing to unpack .../000-libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 110s Selecting previously unselected package libc-dev-bin. 110s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 110s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 110s Selecting previously unselected package linux-libc-dev:arm64. 110s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 110s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 110s Selecting previously unselected package libcrypt-dev:arm64. 110s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 110s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 110s Selecting previously unselected package libtirpc-dev:arm64. 110s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 110s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 110s Selecting previously unselected package libnsl-dev:arm64. 110s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 110s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 110s Selecting previously unselected package rpcsvc-proto. 110s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 110s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 110s Selecting previously unselected package libc6-dev:arm64. 110s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 110s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 110s Selecting previously unselected package libisl23:arm64. 110s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 110s Unpacking libisl23:arm64 (0.26-3) ... 110s Selecting previously unselected package libmpc3:arm64. 110s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 110s Unpacking libmpc3:arm64 (1.3.1-1) ... 110s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 110s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 110s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 111s Selecting previously unselected package cpp-13. 111s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 111s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 111s Selecting previously unselected package cpp-aarch64-linux-gnu. 111s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 111s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 111s Selecting previously unselected package cpp. 111s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 111s Unpacking cpp (4:13.2.0-7ubuntu1) ... 111s Selecting previously unselected package libcc1-0:arm64. 111s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libgomp1:arm64. 111s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libitm1:arm64. 111s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libatomic1:arm64. 111s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libasan8:arm64. 111s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package liblsan0:arm64. 111s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libtsan2:arm64. 111s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libubsan1:arm64. 111s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libhwasan0:arm64. 111s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 111s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 111s Selecting previously unselected package libgcc-13-dev:arm64. 111s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 111s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 111s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 111s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 111s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-13. 112s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-aarch64-linux-gnu. 112s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package gcc. 112s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking gcc (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package libstdc++-13-dev:arm64. 112s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package g++-13-aarch64-linux-gnu. 112s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package g++-13. 113s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking g++-13 (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package g++-aarch64-linux-gnu. 113s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 113s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 113s Selecting previously unselected package g++. 113s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 113s Unpacking g++ (4:13.2.0-7ubuntu1) ... 113s Selecting previously unselected package build-essential. 113s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 113s Unpacking build-essential (12.10ubuntu1) ... 113s Selecting previously unselected package dctrl-tools. 113s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 113s Unpacking dctrl-tools (2.24-3build2) ... 113s Selecting previously unselected package fonts-dejavu-mono. 113s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 113s Unpacking fonts-dejavu-mono (2.37-8) ... 113s Selecting previously unselected package fonts-dejavu-core. 113s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 113s Unpacking fonts-dejavu-core (2.37-8) ... 113s Selecting previously unselected package fontconfig-config. 113s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 113s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 113s Selecting previously unselected package libfontconfig1:arm64. 114s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 114s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 114s Selecting previously unselected package fontconfig. 114s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 114s Unpacking fontconfig (2.15.0-1ubuntu1) ... 114s Selecting previously unselected package fonts-font-awesome. 114s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 114s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 114s Selecting previously unselected package fonts-glyphicons-halflings. 114s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 114s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 114s Selecting previously unselected package fonts-lmodern. 114s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 114s Unpacking fonts-lmodern (2.005-1) ... 115s Selecting previously unselected package fonts-mathjax. 115s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 115s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 115s Selecting previously unselected package libgfortran5:arm64. 115s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 115s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 115s Selecting previously unselected package libgfortran-13-dev:arm64. 115s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 115s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-13. 115s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-aarch64-linux-gnu. 115s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 115s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 115s Selecting previously unselected package gfortran. 115s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 115s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 115s Selecting previously unselected package icu-devtools. 115s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 115s Unpacking icu-devtools (74.2-1ubuntu1) ... 115s Selecting previously unselected package javascript-common. 115s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 115s Unpacking javascript-common (11+nmu1) ... 115s Selecting previously unselected package libio-string-perl. 115s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 115s Unpacking libio-string-perl (1.08-4) ... 115s Selecting previously unselected package liblatex-tounicode-perl. 115s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 115s Unpacking liblatex-tounicode-perl (0.54-2) ... 115s Selecting previously unselected package libbibtex-parser-perl. 115s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 115s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 116s Selecting previously unselected package libblas3:arm64. 116s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 116s Unpacking libblas3:arm64 (3.12.0-3) ... 116s Selecting previously unselected package libblas-dev:arm64. 116s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 116s Unpacking libblas-dev:arm64 (3.12.0-3) ... 116s Selecting previously unselected package libboost1.83-dev:arm64. 116s Preparing to unpack .../057-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 116s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 117s Selecting previously unselected package libboost-dev:arm64. 117s Preparing to unpack .../058-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 117s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 117s Selecting previously unselected package libbz2-dev:arm64. 117s Preparing to unpack .../059-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 117s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 117s Selecting previously unselected package libpixman-1-0:arm64. 117s Preparing to unpack .../060-libpixman-1-0_0.42.2-1_arm64.deb ... 117s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 117s Selecting previously unselected package libxcb-render0:arm64. 117s Preparing to unpack .../061-libxcb-render0_1.15-1_arm64.deb ... 117s Unpacking libxcb-render0:arm64 (1.15-1) ... 117s Selecting previously unselected package libxcb-shm0:arm64. 117s Preparing to unpack .../062-libxcb-shm0_1.15-1_arm64.deb ... 117s Unpacking libxcb-shm0:arm64 (1.15-1) ... 118s Selecting previously unselected package libxrender1:arm64. 118s Preparing to unpack .../063-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 118s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 118s Selecting previously unselected package libcairo2:arm64. 118s Preparing to unpack .../064-libcairo2_1.18.0-1_arm64.deb ... 118s Unpacking libcairo2:arm64 (1.18.0-1) ... 118s Selecting previously unselected package libdatrie1:arm64. 118s Preparing to unpack .../065-libdatrie1_0.2.13-3_arm64.deb ... 118s Unpacking libdatrie1:arm64 (0.2.13-3) ... 118s Selecting previously unselected package libdeflate0:arm64. 118s Preparing to unpack .../066-libdeflate0_1.19-1_arm64.deb ... 118s Unpacking libdeflate0:arm64 (1.19-1) ... 118s Selecting previously unselected package libgraphite2-3:arm64. 118s Preparing to unpack .../067-libgraphite2-3_1.3.14-2_arm64.deb ... 118s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 118s Selecting previously unselected package libharfbuzz0b:arm64. 118s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 118s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 118s Selecting previously unselected package x11-common. 118s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 118s Unpacking x11-common (1:7.7+23ubuntu2) ... 118s Selecting previously unselected package libice6:arm64. 118s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 118s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 118s Selecting previously unselected package libicu-dev:arm64. 118s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 118s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 118s Selecting previously unselected package libjpeg-turbo8:arm64. 118s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 118s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 118s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 118s Preparing to unpack .../073-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 118s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 118s Selecting previously unselected package libjpeg8:arm64. 118s Preparing to unpack .../074-libjpeg8_8c-2ubuntu11_arm64.deb ... 118s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 118s Selecting previously unselected package libjpeg8-dev:arm64. 118s Preparing to unpack .../075-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 118s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 118s Selecting previously unselected package libjpeg-dev:arm64. 118s Preparing to unpack .../076-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 118s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 118s Selecting previously unselected package libjs-bootstrap. 118s Preparing to unpack .../077-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 118s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 118s Selecting previously unselected package libjs-popper.js. 118s Preparing to unpack .../078-libjs-popper.js_1.16.1+ds-6_all.deb ... 118s Unpacking libjs-popper.js (1.16.1+ds-6) ... 118s Selecting previously unselected package libjs-bootstrap4. 118s Preparing to unpack .../079-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 118s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 118s Selecting previously unselected package libjs-d3. 118s 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Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 119s Selecting previously unselected package liblua5.4-0:arm64. 119s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 119s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 119s Selecting previously unselected package libncurses-dev:arm64. 119s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 119s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 119s Selecting previously unselected package libthai-data. 119s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 119s Unpacking libthai-data (0.1.29-2) ... 119s Selecting previously unselected package libthai0:arm64. 119s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 119s Unpacking libthai0:arm64 (0.1.29-2) ... 120s Selecting previously unselected package libpango-1.0-0:arm64. 120s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 120s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 120s Selecting previously unselected package libpangoft2-1.0-0:arm64. 120s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 120s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 120s Selecting previously unselected package libpangocairo-1.0-0:arm64. 120s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 120s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 120s Selecting previously unselected package libpaper1:arm64. 120s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 120s Unpacking libpaper1:arm64 (1.1.29) ... 120s Selecting previously unselected package libpaper-utils. 120s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 120s Unpacking libpaper-utils (1.1.29) ... 120s Selecting previously unselected package libpcre2-16-0:arm64. 120s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 120s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 120s Selecting previously unselected package libpcre2-32-0:arm64. 120s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 120s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 120s Selecting previously unselected package libpcre2-posix3:arm64. 120s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 120s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 120s Selecting previously unselected package libpcre2-dev:arm64. 120s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 120s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 120s Selecting previously unselected package libpkgconf3:arm64. 120s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 120s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 120s Selecting previously unselected package zlib1g-dev:arm64. 120s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 120s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 120s Selecting previously unselected package libpng-dev:arm64. 120s Preparing to unpack .../111-libpng-dev_1.6.43-1_arm64.deb ... 120s Unpacking libpng-dev:arm64 (1.6.43-1) ... 120s Selecting previously unselected package libpotrace0:arm64. 120s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 120s Unpacking libpotrace0:arm64 (1.16-2) ... 120s Selecting previously unselected package libptexenc1:arm64. 120s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 120s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 120s Selecting previously unselected package libreadline-dev:arm64. 120s Preparing to unpack .../114-libreadline-dev_8.2-3_arm64.deb ... 120s Unpacking libreadline-dev:arm64 (8.2-3) ... 120s Selecting previously unselected package libsharpyuv0:arm64. 120s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 120s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 120s Selecting previously unselected package libsm6:arm64. 120s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 120s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 120s Selecting previously unselected package libsynctex2:arm64. 120s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 120s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 120s Selecting previously unselected package libtcl8.6:arm64. 120s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 120s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 120s Selecting previously unselected package libteckit0:arm64. 121s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 121s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 121s Selecting previously unselected package libtexlua53-5:arm64. 121s Preparing to unpack .../120-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 121s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 121s Selecting previously unselected package libjbig0:arm64. 121s Preparing to unpack .../121-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 121s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 121s Selecting previously unselected package libwebp7:arm64. 121s Preparing to unpack .../122-libwebp7_1.3.2-0.4_arm64.deb ... 121s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 121s Selecting previously unselected package libtiff6:arm64. 121s Preparing to unpack .../123-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 121s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 121s Selecting previously unselected package libxft2:arm64. 121s Preparing to unpack .../124-libxft2_2.3.6-1_arm64.deb ... 121s Unpacking libxft2:arm64 (2.3.6-1) ... 121s Selecting previously unselected package libxss1:arm64. 121s Preparing to unpack .../125-libxss1_1%3a1.2.3-1build2_arm64.deb ... 121s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 121s Selecting previously unselected package libtk8.6:arm64. 121s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 121s Unpacking libtk8.6:arm64 (8.6.13-2) ... 121s Selecting previously unselected package libxt6:arm64. 121s Preparing to unpack .../127-libxt6_1%3a1.2.1-1.1_arm64.deb ... 121s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 121s Selecting previously unselected package libxmu6:arm64. 121s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 121s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 121s Selecting previously unselected package libxpm4:arm64. 121s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 121s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 121s Selecting previously unselected package libxaw7:arm64. 121s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 121s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 121s Selecting previously unselected package libxi6:arm64. 121s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 121s Unpacking libxi6:arm64 (2:1.8.1-1) ... 121s Selecting previously unselected package libzzip-0-13:arm64. 121s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 121s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 121s Selecting previously unselected package node-bootstrap-sass. 121s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 121s Unpacking node-bootstrap-sass (3.4.3-2) ... 122s Selecting previously unselected package node-html5shiv. 122s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 122s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 122s Selecting previously unselected package node-normalize.css. 122s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 122s Unpacking node-normalize.css (8.0.1-5) ... 122s Selecting previously unselected package pandoc-data. 122s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 122s Unpacking pandoc-data (3.1.3-1) ... 122s Selecting previously unselected package pandoc. 122s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 122s Unpacking pandoc (3.1.3+ds-2) ... 123s Selecting previously unselected package pkgconf-bin. 123s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 123s Unpacking pkgconf-bin (1.8.1-2) ... 123s Selecting previously unselected package pkgconf:arm64. 123s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 123s Unpacking pkgconf:arm64 (1.8.1-2) ... 123s Selecting previously unselected package pkg-config:arm64. 123s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 123s Unpacking pkg-config:arm64 (1.8.1-2) ... 123s Selecting previously unselected package zip. 123s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 123s Unpacking zip (3.0-13) ... 123s Selecting previously unselected package unzip. 123s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 123s Unpacking unzip (6.0-28ubuntu3) ... 123s Selecting previously unselected package xdg-utils. 124s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 124s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 124s Selecting previously unselected package r-base-core. 124s Preparing to unpack .../144-r-base-core_4.3.2-1build1_arm64.deb ... 124s Unpacking r-base-core (4.3.2-1build1) ... 124s Selecting previously unselected package liblzma-dev:arm64. 124s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 124s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 124s Selecting previously unselected package r-base-dev. 124s Preparing to unpack .../146-r-base-dev_4.3.2-1build1_all.deb ... 124s Unpacking r-base-dev (4.3.2-1build1) ... 124s Selecting previously unselected package pkg-r-autopkgtest. 124s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 124s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 124s Selecting previously unselected package r-bioc-biocgenerics. 124s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 124s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 124s Selecting previously unselected package r-bioc-biobase. 125s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 125s Unpacking r-bioc-biobase (2.62.0-1) ... 125s Selecting previously unselected package r-bioc-s4vectors. 125s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 125s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 125s Selecting previously unselected package r-bioc-iranges. 125s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 125s Unpacking r-bioc-iranges (2.36.0-1) ... 125s Selecting previously unselected package r-cran-dbi. 125s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 125s Unpacking r-cran-dbi (1.2.2-1) ... 125s Selecting previously unselected package r-cran-bit. 125s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 125s Unpacking r-cran-bit (4.0.5-1) ... 125s Selecting previously unselected package r-cran-bit64. 125s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 125s Unpacking r-cran-bit64 (4.0.5-1) ... 125s Selecting previously unselected package r-cran-rlang. 125s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 125s Unpacking r-cran-rlang (1.1.3-1) ... 126s Selecting previously unselected package r-cran-cli. 126s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 126s Unpacking r-cran-cli (3.6.2-1) ... 126s Selecting previously unselected package r-cran-glue. 126s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 126s Unpacking r-cran-glue (1.7.0-1) ... 126s Selecting previously unselected package r-cran-lifecycle. 126s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 126s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 126s Selecting previously unselected package r-cran-vctrs. 126s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 126s Unpacking r-cran-vctrs (0.6.5-1) ... 126s Selecting previously unselected package r-cran-blob. 126s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 126s Unpacking r-cran-blob (1.2.4-1) ... 126s Selecting previously unselected package r-cran-fastmap. 126s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 126s Unpacking r-cran-fastmap (1.1.1-1) ... 126s Selecting previously unselected package r-cran-cachem. 126s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 126s Unpacking r-cran-cachem (1.0.8-1) ... 126s Selecting previously unselected package r-cran-memoise. 126s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 126s Unpacking r-cran-memoise (2.0.1-1) ... 126s Selecting previously unselected package r-cran-pkgconfig. 126s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 126s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 126s Selecting previously unselected package r-cran-plogr. 126s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 126s Unpacking r-cran-plogr (0.2.0-3build1) ... 126s Selecting previously unselected package r-cran-cpp11. 126s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 126s Unpacking r-cran-cpp11 (0.4.7-1) ... 126s Selecting previously unselected package r-cran-rsqlite. 127s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 127s Unpacking r-cran-rsqlite (2.3.4-1) ... 127s Selecting previously unselected package r-cran-curl. 127s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 127s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 127s Selecting previously unselected package r-cran-jsonlite. 127s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 127s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 127s Selecting previously unselected package r-cran-mime. 127s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 127s Unpacking r-cran-mime (0.12-1) ... 127s Selecting previously unselected package r-cran-sys. 127s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 127s Unpacking r-cran-sys (3.4.2-1) ... 127s Selecting previously unselected package r-cran-askpass. 127s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 127s Unpacking r-cran-askpass (1.2.0-1) ... 127s Selecting previously unselected package r-cran-openssl. 127s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 127s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 127s Selecting previously unselected package r-cran-r6. 127s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 127s Unpacking r-cran-r6 (2.5.1-1) ... 127s Selecting previously unselected package r-cran-httr. 127s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 127s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 127s Selecting previously unselected package r-cran-png. 127s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 127s Unpacking r-cran-png (0.1-8-1) ... 127s Selecting previously unselected package r-bioc-zlibbioc. 127s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 127s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 127s Selecting previously unselected package r-bioc-xvector. 127s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 127s Unpacking r-bioc-xvector (0.42.0-1) ... 127s Selecting previously unselected package r-cran-bitops. 127s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 127s Unpacking r-cran-bitops (1.0-7-1) ... 127s Selecting previously unselected package r-cran-rcurl. 127s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 127s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 127s Selecting previously unselected package r-bioc-genomeinfodbdata. 128s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 128s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 128s Selecting previously unselected package r-bioc-genomeinfodb. 128s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 128s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 129s Selecting previously unselected package r-cran-crayon. 129s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 129s Unpacking r-cran-crayon (1.5.2-1) ... 129s Selecting previously unselected package r-bioc-biostrings. 129s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 129s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 129s Selecting previously unselected package r-bioc-keggrest. 129s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 129s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 129s Selecting previously unselected package r-bioc-annotationdbi. 129s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 129s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 129s Selecting previously unselected package r-bioc-genomicranges. 129s Preparing to unpack .../187-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 129s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 129s Selecting previously unselected package r-cran-lazyeval. 129s Preparing to unpack .../188-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 129s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 129s Selecting previously unselected package r-bioc-annotationfilter. 129s Preparing to unpack .../189-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 129s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 130s Selecting previously unselected package r-cran-generics. 130s Preparing to unpack .../190-r-cran-generics_0.1.3-1_all.deb ... 130s Unpacking r-cran-generics (0.1.3-1) ... 130s Selecting previously unselected package r-cran-magrittr. 130s Preparing to unpack .../191-r-cran-magrittr_2.0.3-1_arm64.deb ... 130s Unpacking r-cran-magrittr (2.0.3-1) ... 130s Selecting previously unselected package r-cran-fansi. 130s Preparing to unpack .../192-r-cran-fansi_1.0.5-1_arm64.deb ... 130s Unpacking r-cran-fansi (1.0.5-1) ... 130s Selecting previously unselected package r-cran-utf8. 130s Preparing to unpack .../193-r-cran-utf8_1.2.4-1_arm64.deb ... 130s Unpacking r-cran-utf8 (1.2.4-1) ... 130s Selecting previously unselected package r-cran-pillar. 130s Preparing to unpack .../194-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 130s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 130s Selecting previously unselected package r-cran-tibble. 130s Preparing to unpack .../195-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 130s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 130s Selecting previously unselected package r-cran-withr. 130s Preparing to unpack .../196-r-cran-withr_2.5.0-1_all.deb ... 130s Unpacking r-cran-withr (2.5.0-1) ... 130s Selecting previously unselected package r-cran-tidyselect. 130s Preparing to unpack .../197-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 130s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 130s Selecting previously unselected package r-cran-dplyr. 130s Preparing to unpack .../198-r-cran-dplyr_1.1.4-1_arm64.deb ... 130s Unpacking r-cran-dplyr (1.1.4-1) ... 130s Selecting previously unselected package r-cran-purrr. 130s Preparing to unpack .../199-r-cran-purrr_1.0.2-1_arm64.deb ... 130s Unpacking r-cran-purrr (1.0.2-1) ... 130s Selecting previously unselected package r-cran-stringi. 130s Preparing to unpack .../200-r-cran-stringi_1.8.3-1_arm64.deb ... 130s Unpacking r-cran-stringi (1.8.3-1) ... 130s Selecting previously unselected package r-cran-stringr. 130s Preparing to unpack .../201-r-cran-stringr_1.5.1-1_all.deb ... 130s Unpacking r-cran-stringr (1.5.1-1) ... 130s Selecting previously unselected package r-cran-tidyr. 130s Preparing to unpack .../202-r-cran-tidyr_1.3.1-1_arm64.deb ... 130s Unpacking r-cran-tidyr (1.3.1-1) ... 130s Selecting previously unselected package r-cran-dbplyr. 130s Preparing to unpack .../203-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 130s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 131s Selecting previously unselected package r-cran-filelock. 131s Preparing to unpack .../204-r-cran-filelock_1.0.3-1_arm64.deb ... 131s Unpacking r-cran-filelock (1.0.3-1) ... 131s Selecting previously unselected package r-bioc-biocfilecache. 131s Preparing to unpack .../205-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 131s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 131s Selecting previously unselected package r-bioc-biocio. 131s Preparing to unpack .../206-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 131s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 131s Selecting previously unselected package r-cran-formatr. 131s Preparing to unpack .../207-r-cran-formatr_1.14-1_all.deb ... 131s Unpacking r-cran-formatr (1.14-1) ... 131s Selecting previously unselected package r-cran-lambda.r. 131s Preparing to unpack .../208-r-cran-lambda.r_1.2.4-2build1_all.deb ... 131s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 131s Selecting previously unselected package r-cran-futile.options. 131s Preparing to unpack .../209-r-cran-futile.options_1.0.1-3build1_all.deb ... 131s Unpacking r-cran-futile.options (1.0.1-3build1) ... 131s Selecting previously unselected package r-cran-futile.logger. 131s Preparing to unpack .../210-r-cran-futile.logger_1.4.3-4build1_all.deb ... 131s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 131s Selecting previously unselected package r-cran-snow. 131s Preparing to unpack .../211-r-cran-snow_1%3a0.4.4-2_all.deb ... 131s Unpacking r-cran-snow (1:0.4.4-2) ... 131s Selecting previously unselected package r-cran-codetools. 131s Preparing to unpack .../212-r-cran-codetools_0.2-19-1_all.deb ... 131s Unpacking r-cran-codetools (0.2-19-1) ... 131s Selecting previously unselected package r-cran-bh. 131s Preparing to unpack .../213-r-cran-bh_1.84.0-1_all.deb ... 131s Unpacking r-cran-bh (1.84.0-1) ... 131s Selecting previously unselected package r-bioc-biocparallel. 131s Preparing to unpack .../214-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 131s Unpacking r-bioc-biocparallel (1.36.0-1) ... 131s Selecting previously unselected package r-cran-base64enc. 131s Preparing to unpack .../215-r-cran-base64enc_0.1-3-3_arm64.deb ... 131s Unpacking r-cran-base64enc (0.1-3-3) ... 131s Selecting previously unselected package r-cran-digest. 131s Preparing to unpack .../216-r-cran-digest_0.6.34-1_arm64.deb ... 131s Unpacking r-cran-digest (0.6.34-1) ... 131s Selecting previously unselected package r-cran-ellipsis. 131s Preparing to unpack .../217-r-cran-ellipsis_0.3.2-2_arm64.deb ... 131s Unpacking r-cran-ellipsis (0.3.2-2) ... 131s Selecting previously unselected package r-cran-htmltools. 131s Preparing to unpack .../218-r-cran-htmltools_0.5.7-1_arm64.deb ... 131s Unpacking r-cran-htmltools (0.5.7-1) ... 131s Selecting previously unselected package r-cran-evaluate. 131s Preparing to unpack .../219-r-cran-evaluate_0.23-1_all.deb ... 131s Unpacking r-cran-evaluate (0.23-1) ... 131s Selecting previously unselected package r-cran-xfun. 131s Preparing to unpack .../220-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 131s Unpacking r-cran-xfun (0.41+dfsg-1) ... 131s Selecting previously unselected package r-cran-highr. 131s Preparing to unpack .../221-r-cran-highr_0.10+dfsg-1_all.deb ... 131s Unpacking r-cran-highr (0.10+dfsg-1) ... 131s Selecting previously unselected package r-cran-yaml. 131s Preparing to unpack .../222-r-cran-yaml_2.3.8-1_arm64.deb ... 131s Unpacking r-cran-yaml (2.3.8-1) ... 131s Selecting previously unselected package libjs-mathjax. 131s Preparing to unpack .../223-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 131s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 132s Selecting previously unselected package r-cran-knitr. 132s Preparing to unpack .../224-r-cran-knitr_1.45+dfsg-1_all.deb ... 132s Unpacking r-cran-knitr (1.45+dfsg-1) ... 132s Selecting previously unselected package r-cran-jquerylib. 132s Preparing to unpack .../225-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 132s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 132s Selecting previously unselected package r-cran-fs. 132s Preparing to unpack .../226-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 132s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 132s Selecting previously unselected package r-cran-rappdirs. 132s Preparing to unpack .../227-r-cran-rappdirs_0.3.3-1_arm64.deb ... 132s Unpacking r-cran-rappdirs (0.3.3-1) ... 132s Selecting previously unselected package r-cran-sass. 132s Preparing to unpack .../228-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 132s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 132s Selecting previously unselected package r-cran-bslib. 132s Preparing to unpack .../229-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 132s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 132s Selecting previously unselected package r-cran-fontawesome. 132s Preparing to unpack .../230-r-cran-fontawesome_0.5.2-1_all.deb ... 132s Unpacking r-cran-fontawesome (0.5.2-1) ... 132s Selecting previously unselected package r-cran-tinytex. 132s Preparing to unpack .../231-r-cran-tinytex_0.49-1_all.deb ... 132s Unpacking r-cran-tinytex (0.49-1) ... 133s Selecting previously unselected package libjs-modernizr. 133s Preparing to unpack .../232-libjs-modernizr_2.6.2+ds1-5_all.deb ... 133s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 133s Selecting previously unselected package r-cran-littler. 133s Preparing to unpack .../233-r-cran-littler_0.3.19-1_arm64.deb ... 133s Unpacking r-cran-littler (0.3.19-1) ... 133s Selecting previously unselected package r-cran-pkgkitten. 133s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 133s Unpacking r-cran-pkgkitten (0.2.3-1) ... 133s Selecting previously unselected package r-cran-rcpp. 133s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_arm64.deb ... 133s Unpacking r-cran-rcpp (1.0.12-1) ... 133s Selecting previously unselected package r-cran-later. 133s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 133s Unpacking r-cran-later (1.3.2+dfsg-1) ... 133s Selecting previously unselected package r-cran-promises. 133s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 133s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 133s Selecting previously unselected package r-cran-httpuv. 133s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 133s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 133s Selecting previously unselected package r-cran-xtable. 133s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 133s Unpacking r-cran-xtable (1:1.8-4-2) ... 133s Selecting previously unselected package r-cran-sourcetools. 133s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 133s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 133s Selecting previously unselected package r-cran-commonmark. 133s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_arm64.deb ... 133s Unpacking r-cran-commonmark (1.9.1-1) ... 133s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 133s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 133s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 133s Selecting previously unselected package r-cran-shiny. 133s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 133s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 133s Selecting previously unselected package r-cran-rmarkdown. 133s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 133s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 133s Selecting previously unselected package r-cran-bookdown. 133s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 133s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 133s Selecting previously unselected package r-cran-biocmanager. 133s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 133s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 133s Selecting previously unselected package tex-common. 133s Preparing to unpack .../247-tex-common_6.18_all.deb ... 133s Unpacking tex-common (6.18) ... 133s Selecting previously unselected package t1utils. 133s Preparing to unpack .../248-t1utils_1.41-4build2_arm64.deb ... 133s Unpacking t1utils (1.41-4build2) ... 133s Selecting previously unselected package texlive-binaries. 133s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 133s Unpacking texlive-binaries (2023.20230311.66589-9) ... 134s Selecting previously unselected package texlive-base. 134s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 134s Unpacking texlive-base (2023.20240207-1) ... 135s Selecting previously unselected package texlive-latex-base. 135s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 135s Unpacking texlive-latex-base (2023.20240207-1) ... 135s Selecting previously unselected package texlive-bibtex-extra. 135s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 135s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 138s Selecting previously unselected package r-bioc-biocstyle. 138s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 138s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 138s Selecting previously unselected package r-cran-xml. 138s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 138s Unpacking r-cran-xml (3.99-0.16.1-1) ... 138s Selecting previously unselected package r-cran-hms. 138s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 138s Unpacking r-cran-hms (1.1.3-1) ... 138s Selecting previously unselected package r-cran-prettyunits. 138s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 138s Unpacking r-cran-prettyunits (1.2.0-1) ... 138s Selecting previously unselected package r-cran-progress. 138s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 138s Unpacking r-cran-progress (1.2.3-1) ... 138s Selecting previously unselected package r-cran-xml2. 138s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_arm64.deb ... 138s Unpacking r-cran-xml2 (1.3.6-1) ... 138s Selecting previously unselected package r-bioc-biomart. 138s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 138s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 138s Selecting previously unselected package r-cran-farver. 138s Preparing to unpack .../260-r-cran-farver_2.1.1-1_arm64.deb ... 138s Unpacking r-cran-farver (2.1.1-1) ... 138s Selecting previously unselected package r-cran-labeling. 138s Preparing to unpack .../261-r-cran-labeling_0.4.3-1_all.deb ... 138s Unpacking r-cran-labeling (0.4.3-1) ... 138s Selecting previously unselected package r-cran-colorspace. 138s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 138s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 139s Selecting previously unselected package r-cran-munsell. 139s Preparing to unpack .../263-r-cran-munsell_0.5.0-2build1_all.deb ... 139s Unpacking r-cran-munsell (0.5.0-2build1) ... 139s Selecting previously unselected package r-cran-rcolorbrewer. 139s Preparing to unpack .../264-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 139s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 139s Selecting previously unselected package r-cran-viridislite. 139s Preparing to unpack .../265-r-cran-viridislite_0.4.2-2_all.deb ... 139s Unpacking r-cran-viridislite (0.4.2-2) ... 139s Selecting previously unselected package r-cran-scales. 139s Preparing to unpack .../266-r-cran-scales_1.3.0-1_all.deb ... 139s Unpacking r-cran-scales (1.3.0-1) ... 139s Selecting previously unselected package r-cran-gtable. 139s Preparing to unpack .../267-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 139s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 139s Selecting previously unselected package r-cran-isoband. 139s Preparing to unpack .../268-r-cran-isoband_0.2.7-1_arm64.deb ... 139s Unpacking r-cran-isoband (0.2.7-1) ... 139s Selecting previously unselected package r-cran-mass. 139s Preparing to unpack .../269-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 139s Unpacking r-cran-mass (7.3-60.0.1-1) ... 139s Selecting previously unselected package r-cran-lattice. 139s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 139s Unpacking r-cran-lattice (0.22-5-1) ... 139s Selecting previously unselected package r-cran-nlme. 139s Preparing to unpack .../271-r-cran-nlme_3.1.164-1_arm64.deb ... 139s Unpacking r-cran-nlme (3.1.164-1) ... 139s Selecting previously unselected package r-cran-matrix. 139s Preparing to unpack .../272-r-cran-matrix_1.6-5-1_arm64.deb ... 139s Unpacking r-cran-matrix (1.6-5-1) ... 139s Selecting previously unselected package r-cran-mgcv. 139s Preparing to unpack .../273-r-cran-mgcv_1.9-1-1_arm64.deb ... 139s Unpacking r-cran-mgcv (1.9-1-1) ... 139s Selecting previously unselected package r-cran-ggplot2. 139s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 139s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 139s Selecting previously unselected package r-cran-cluster. 139s Preparing to unpack .../275-r-cran-cluster_2.1.6-1_arm64.deb ... 139s Unpacking r-cran-cluster (2.1.6-1) ... 139s Selecting previously unselected package r-cran-survival. 139s Preparing to unpack .../276-r-cran-survival_3.5-8-1_arm64.deb ... 139s Unpacking r-cran-survival (3.5-8-1) ... 139s Selecting previously unselected package r-cran-rpart. 139s Preparing to unpack .../277-r-cran-rpart_4.1.23-1_arm64.deb ... 139s Unpacking r-cran-rpart (4.1.23-1) ... 139s Selecting previously unselected package r-cran-nnet. 139s Preparing to unpack .../278-r-cran-nnet_7.3-19-2_arm64.deb ... 139s Unpacking r-cran-nnet (7.3-19-2) ... 139s Selecting previously unselected package r-cran-foreign. 139s Preparing to unpack .../279-r-cran-foreign_0.8.86-1_arm64.deb ... 139s Unpacking r-cran-foreign (0.8.86-1) ... 140s Selecting previously unselected package r-cran-gridextra. 140s Preparing to unpack .../280-r-cran-gridextra_2.3-3build1_all.deb ... 140s Unpacking r-cran-gridextra (2.3-3build1) ... 140s Selecting previously unselected package r-cran-data.table. 140s Preparing to unpack .../281-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 140s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 140s Selecting previously unselected package r-cran-backports. 140s Preparing to unpack .../282-r-cran-backports_1.4.1-1_arm64.deb ... 140s Unpacking r-cran-backports (1.4.1-1) ... 140s Selecting previously unselected package r-cran-checkmate. 140s Preparing to unpack .../283-r-cran-checkmate_2.3.1-1_arm64.deb ... 140s Unpacking r-cran-checkmate (2.3.1-1) ... 140s Selecting previously unselected package r-cran-htmlwidgets. 140s Preparing to unpack .../284-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 140s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 140s Selecting previously unselected package r-cran-rstudioapi. 140s Preparing to unpack .../285-r-cran-rstudioapi_0.15.0-1_all.deb ... 140s Unpacking r-cran-rstudioapi (0.15.0-1) ... 140s Selecting previously unselected package r-cran-htmltable. 140s Preparing to unpack .../286-r-cran-htmltable_2.4.2-1_all.deb ... 140s Unpacking r-cran-htmltable (2.4.2-1) ... 140s Selecting previously unselected package r-cran-viridis. 140s Preparing to unpack .../287-r-cran-viridis_0.6.5-1_all.deb ... 140s Unpacking r-cran-viridis (0.6.5-1) ... 140s Selecting previously unselected package r-cran-formula. 140s Preparing to unpack .../288-r-cran-formula_1.2-5-1_all.deb ... 140s Unpacking r-cran-formula (1.2-5-1) ... 140s Selecting previously unselected package r-cran-chron. 140s Preparing to unpack .../289-r-cran-chron_2.3-61-2_arm64.deb ... 140s Unpacking r-cran-chron (2.3-61-2) ... 140s Selecting previously unselected package r-cran-jpeg. 140s Preparing to unpack .../290-r-cran-jpeg_0.1-10-1_arm64.deb ... 140s Unpacking r-cran-jpeg (0.1-10-1) ... 140s Selecting previously unselected package r-cran-deldir. 140s Preparing to unpack .../291-r-cran-deldir_2.0-4-1_arm64.deb ... 140s Unpacking r-cran-deldir (2.0-4-1) ... 140s Selecting previously unselected package r-cran-rcppeigen. 140s Preparing to unpack .../292-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 140s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 140s Selecting previously unselected package r-cran-interp. 140s Preparing to unpack .../293-r-cran-interp_1.1-6-1_arm64.deb ... 140s Unpacking r-cran-interp (1.1-6-1) ... 140s Selecting previously unselected package r-cran-latticeextra. 140s Preparing to unpack .../294-r-cran-latticeextra_0.6-30-1_all.deb ... 140s Unpacking r-cran-latticeextra (0.6-30-1) ... 140s Selecting previously unselected package r-cran-acepack. 140s Preparing to unpack .../295-r-cran-acepack_1.4.2-1_arm64.deb ... 140s Unpacking r-cran-acepack (1.4.2-1) ... 140s Selecting previously unselected package r-cran-hmisc. 141s Preparing to unpack .../296-r-cran-hmisc_5.1-1-1_arm64.deb ... 141s Unpacking r-cran-hmisc (5.1-1-1) ... 141s Selecting previously unselected package r-cran-dichromat. 141s Preparing to unpack .../297-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 141s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 141s Selecting previously unselected package r-cran-matrixstats. 141s Preparing to unpack .../298-r-cran-matrixstats_1.2.0-1_arm64.deb ... 141s Unpacking r-cran-matrixstats (1.2.0-1) ... 141s Selecting previously unselected package r-bioc-matrixgenerics. 141s Preparing to unpack .../299-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 141s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 141s Selecting previously unselected package r-cran-abind. 141s Preparing to unpack .../300-r-cran-abind_1.4-5-2_all.deb ... 141s Unpacking r-cran-abind (1.4-5-2) ... 141s Selecting previously unselected package r-bioc-s4arrays. 141s Preparing to unpack .../301-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 141s Selecting previously unselected package r-bioc-sparsearray. 141s Preparing to unpack .../302-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 141s Selecting previously unselected package r-bioc-delayedarray. 141s Preparing to unpack .../303-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 141s Selecting previously unselected package r-bioc-summarizedexperiment. 141s Preparing to unpack .../304-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 141s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 141s Selecting previously unselected package r-bioc-rhtslib. 141s Preparing to unpack .../305-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 141s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 141s Selecting previously unselected package r-bioc-rsamtools. 141s Preparing to unpack .../306-r-bioc-rsamtools_2.18.0+dfsg-1build1_arm64.deb ... 141s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 141s Selecting previously unselected package r-bioc-genomicalignments. 141s Preparing to unpack .../307-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 141s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 141s Selecting previously unselected package r-cran-rjson. 141s Preparing to unpack .../308-r-cran-rjson_0.2.21-1_arm64.deb ... 141s Unpacking r-cran-rjson (0.2.21-1) ... 141s Selecting previously unselected package r-cran-restfulr. 141s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_arm64.deb ... 141s Unpacking r-cran-restfulr (0.0.15-1) ... 141s Selecting previously unselected package r-bioc-rtracklayer. 141s Preparing to unpack .../310-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 141s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 141s Selecting previously unselected package r-bioc-genomicfeatures. 141s Preparing to unpack .../311-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 141s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 141s Selecting previously unselected package r-bioc-bsgenome. 141s Preparing to unpack .../312-r-bioc-bsgenome_1.70.2-1_all.deb ... 141s Unpacking r-bioc-bsgenome (1.70.2-1) ... 141s Selecting previously unselected package r-bioc-variantannotation. 142s Preparing to unpack .../313-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 142s Unpacking r-bioc-variantannotation (1.48.1-1) ... 142s Selecting previously unselected package r-bioc-protgenerics. 142s Preparing to unpack .../314-r-bioc-protgenerics_1.34.0-1_all.deb ... 142s Unpacking r-bioc-protgenerics (1.34.0-1) ... 142s Selecting previously unselected package r-bioc-ensembldb. 142s Preparing to unpack .../315-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 142s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 142s Selecting previously unselected package r-bioc-biovizbase. 142s Preparing to unpack .../316-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 142s Unpacking r-bioc-biovizbase (1.50.0-1) ... 142s Selecting previously unselected package r-bioc-gviz. 142s Preparing to unpack .../317-r-bioc-gviz_1.46.1+dfsg-1_all.deb ... 142s Unpacking r-bioc-gviz (1.46.1+dfsg-1) ... 142s Selecting previously unselected package r-cran-brio. 142s Preparing to unpack .../318-r-cran-brio_1.1.4-1_arm64.deb ... 142s Unpacking r-cran-brio (1.1.4-1) ... 142s Selecting previously unselected package r-cran-ps. 142s Preparing to unpack .../319-r-cran-ps_1.7.6-1_arm64.deb ... 142s Unpacking r-cran-ps (1.7.6-1) ... 142s Selecting previously unselected package r-cran-processx. 142s Preparing to unpack .../320-r-cran-processx_3.8.3-1_arm64.deb ... 142s Unpacking r-cran-processx (3.8.3-1) ... 142s Selecting previously unselected package r-cran-callr. 142s Preparing to unpack .../321-r-cran-callr_3.7.3-2_all.deb ... 142s Unpacking r-cran-callr (3.7.3-2) ... 142s Selecting previously unselected package r-cran-desc. 142s Preparing to unpack .../322-r-cran-desc_1.4.3-1_all.deb ... 142s Unpacking r-cran-desc (1.4.3-1) ... 142s Selecting previously unselected package r-cran-diffobj. 142s Preparing to unpack .../323-r-cran-diffobj_0.3.5-1_arm64.deb ... 142s Unpacking r-cran-diffobj (0.3.5-1) ... 142s Selecting previously unselected package r-cran-pkgbuild. 142s Preparing to unpack .../324-r-cran-pkgbuild_1.4.3-1_all.deb ... 142s Unpacking r-cran-pkgbuild (1.4.3-1) ... 142s Selecting previously unselected package r-cran-rprojroot. 142s Preparing to unpack .../325-r-cran-rprojroot_2.0.4-1_all.deb ... 142s Unpacking 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installed and configured, doing nothing! 144s Setting up libio-string-perl (1.08-4) ... 144s Setting up zip (3.0-13) ... 144s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 144s Setting up libblas3:arm64 (3.12.0-3) ... 144s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 144s Setting up libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 144s Setting up libpkgconf3:arm64 (1.8.1-2) ... 144s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 144s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 144s Setting up t1utils (1.41-4build2) ... 144s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 144s Setting up libjs-d3 (3.5.17-4) ... 144s Setting up fonts-dejavu-mono (2.37-8) ... 144s Setting up libmpc3:arm64 (1.3.1-1) ... 144s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 144s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 144s Setting up icu-devtools (74.2-1ubuntu1) 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up r-cran-progress (1.2.3-1) ... 149s Setting up r-cran-pkgload (1.3.4-1) ... 149s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 149s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 149s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 149s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 149s Setting up r-cran-rematch2 (2.1.2-2build1) ... 149s Setting up r-cran-rpart (4.1.23-1) ... 149s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 149s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 149s Setting up r-cran-fontawesome (0.5.2-1) ... 149s Setting up r-cran-latticeextra (0.6-30-1) ... 149s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 149s Setting up r-cran-viridis (0.6.5-1) ... 149s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 149s Setting up r-cran-waldo (0.5.2-1build1) ... 149s Setting up r-cran-tidyr (1.3.1-1) ... 149s Setting up r-bioc-rsamtools (2.18.0+dfsg-1build1) ... 149s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 149s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 149s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 149s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 149s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 149s Setting up r-bioc-annotationdbi (1.64.1-1) ... 149s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 149s Setting up r-cran-testthat (3.2.1-1) ... 149s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 149s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 149s Setting up r-bioc-genomicalignments (1.38.2-1) ... 149s Setting up r-cran-bookdown (0.37+dfsg-1) ... 149s Setting up r-bioc-rtracklayer (1.62.0-1) ... 149s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 149s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 149s Setting up r-bioc-bsgenome (1.70.2-1) ... 149s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 149s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 149s Setting up r-bioc-variantannotation (1.48.1-1) ... 149s Setting up r-cran-htmltable (2.4.2-1) ... 149s Setting up r-cran-hmisc (5.1-1-1) ... 149s Setting up r-bioc-biovizbase (1.50.0-1) ... 149s Setting up r-bioc-gviz (1.46.1+dfsg-1) ... 149s Setting up autopkgtest-satdep (0) ... 149s Processing triggers for man-db (2.12.0-3) ... 150s Processing triggers for install-info (7.1-3) ... 150s Processing triggers for libc-bin (2.39-0ubuntu2) ... 150s Processing triggers for tex-common (6.18) ... 150s Running updmap-sys. This may take some time... done. 151s Running mktexlsr /var/lib/texmf ... done. 151s Building format(s) --all. 187s This may take some time... done. 203s (Reading database ... 129330 files and directories currently installed.) 203s Removing autopkgtest-satdep (0) ... 203s autopkgtest [13:46:58]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 203s autopkgtest [13:46:58]: test pkg-r-autopkgtest: [----------------------- 204s Test: Try to load the R library Gviz 204s 204s R version 4.3.2 (2023-10-31) -- "Eye Holes" 204s Copyright (C) 2023 The R Foundation for Statistical Computing 204s Platform: aarch64-unknown-linux-gnu (64-bit) 204s 204s R is free software and comes with ABSOLUTELY NO WARRANTY. 204s You are welcome to redistribute it under certain conditions. 204s Type 'license()' or 'licence()' for distribution details. 204s 204s R is a collaborative project with many contributors. 204s Type 'contributors()' for more information and 204s 'citation()' on how to cite R or R packages in publications. 204s 204s Type 'demo()' for some demos, 'help()' for on-line help, or 204s 'help.start()' for an HTML browser interface to help. 204s Type 'q()' to quit R. 204s 204s > library('Gviz') 204s Loading required package: S4Vectors 204s Loading required package: stats4 205s Loading required package: BiocGenerics 205s 205s Attaching package: ‘BiocGenerics’ 205s 205s The following objects are masked from ‘package:stats’: 205s 205s IQR, mad, sd, var, xtabs 205s 205s The following objects are masked from ‘package:base’: 205s 205s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 205s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 205s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 205s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 205s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 205s table, tapply, union, unique, unsplit, which.max, which.min 205s 205s 205s Attaching package: ‘S4Vectors’ 205s 205s The following object is masked from ‘package:utils’: 205s 205s findMatches 205s 205s The following objects are masked from ‘package:base’: 205s 205s expand.grid, I, unname 205s 205s Loading required package: IRanges 206s Loading required package: GenomicRanges 206s Loading required package: GenomeInfoDb 207s Loading required package: grid 219s > 219s > 219s Other tests are currently unsupported! 219s They will be progressively added. 220s autopkgtest [13:47:15]: test pkg-r-autopkgtest: -----------------------] 220s autopkgtest [13:47:15]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 220s pkg-r-autopkgtest PASS 220s autopkgtest [13:47:15]: @@@@@@@@@@@@@@@@@@@@ summary 220s pkg-r-autopkgtest PASS 231s Creating nova instance adt-noble-arm64-r-bioc-gviz-20240316-134335-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...