0s autopkgtest [17:34:06]: starting date and time: 2024-03-16 17:34:06+0000 0s autopkgtest [17:34:06]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:34:06]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.10ixetoi/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-gsva --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos02-arm64-20.secgroup --name adt-noble-arm64-r-bioc-gsva-20240316-173406-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 95s autopkgtest [17:35:41]: testbed dpkg architecture: arm64 95s autopkgtest [17:35:41]: testbed apt version: 2.7.12 95s autopkgtest [17:35:41]: @@@@@@@@@@@@@@@@@@@@ test bed setup 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 97s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 99s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 99s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 99s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 99s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 99s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 99s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 99s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 99s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 100s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 100s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 100s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 105s Fetched 9060 kB in 4s (2222 kB/s) 105s Reading package lists... 110s Reading package lists... 110s Building dependency tree... 110s Reading state information... 112s Calculating upgrade... 113s The following packages will be REMOVED: 113s libglib2.0-0 libssl3 113s The following NEW packages will be installed: 113s libglib2.0-0t64 libssl3t64 xdg-user-dirs 113s The following packages have been kept back: 113s curl 113s The following packages will be upgraded: 113s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 113s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 113s Need to get 4592 kB of archives. 113s After this operation, 211 kB of additional disk space will be used. 113s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 113s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 113s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 113s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 113s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 113s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 114s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 114s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 114s Fetched 4592 kB in 1s (6070 kB/s) 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 115s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 115s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 115s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 115s udisks2 depends on libglib2.0-0 (>= 2.77.0). 115s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 115s python3-gi depends on libglib2.0-0 (>= 2.77.0). 115s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 115s netplan.io depends on libglib2.0-0 (>= 2.70.0). 115s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 115s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 115s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 115s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 115s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 115s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 115s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 115s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 115s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 115s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 115s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 115s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 115s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 115s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 115s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 115s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 115s fwupd depends on libglib2.0-0 (>= 2.79.0). 115s bolt depends on libglib2.0-0 (>= 2.56.0). 115s 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 115s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 115s Selecting previously unselected package libglib2.0-0t64:arm64. 115s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 115s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 115s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 115s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 115s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 116s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 116s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 116s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 116s wget depends on libssl3 (>= 3.0.0). 116s u-boot-tools depends on libssl3 (>= 3.0.0). 116s tnftp depends on libssl3 (>= 3.0.0). 116s tcpdump depends on libssl3 (>= 3.0.0). 116s systemd-resolved depends on libssl3 (>= 3.0.0). 116s systemd depends on libssl3 (>= 3.0.0). 116s sudo depends on libssl3 (>= 3.0.0). 116s sbsigntool depends on libssl3 (>= 3.0.0). 116s rsync depends on libssl3 (>= 3.0.0). 116s python3-cryptography depends on libssl3 (>= 3.0.0). 116s openssh-server depends on libssl3 (>= 3.0.10). 116s openssh-client depends on libssl3 (>= 3.0.10). 116s mtd-utils depends on libssl3 (>= 3.0.0). 116s mokutil depends on libssl3 (>= 3.0.0). 116s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 116s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 116s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 116s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 116s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 116s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 116s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 116s libnvme1 depends on libssl3 (>= 3.0.0). 116s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 116s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 116s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 116s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 116s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 116s kmod depends on libssl3 (>= 3.0.0). 116s dhcpcd-base depends on libssl3 (>= 3.0.0). 116s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 116s 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 116s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 116s Selecting previously unselected package libssl3t64:arm64. 116s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75839 files and directories currently installed.) 116s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 116s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 116s Preparing to unpack .../libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 116s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 116s Preparing to unpack .../libtirpc-common_1.3.4+ds-1.1_all.deb ... 116s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 116s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 116s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 117s Selecting previously unselected package xdg-user-dirs. 117s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 117s Unpacking xdg-user-dirs (0.18-1) ... 117s Setting up xdg-user-dirs (0.18-1) ... 117s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 117s Setting up libtirpc-common (1.3.4+ds-1.1) ... 117s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 117s No schema files found: doing nothing. 117s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 117s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 117s Setting up openssl (3.0.13-0ubuntu1) ... 117s Setting up readline-common (8.2-3.1) ... 117s Processing triggers for man-db (2.12.0-3) ... 118s Processing triggers for install-info (7.1-3) ... 118s Processing triggers for libc-bin (2.39-0ubuntu2) ... 118s Reading package lists... 119s Building dependency tree... 119s Reading state information... 121s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 121s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 121s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 121s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 122s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 125s Reading package lists... 125s Reading package lists... 126s Building dependency tree... 126s Reading state information... 127s Calculating upgrade... 128s The following packages have been kept back: 128s curl 128s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 128s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 133s autopkgtest [17:36:19]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 134s autopkgtest [17:36:20]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gsva 136s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gsva 1.50.0+ds-1 (dsc) [2397 B] 136s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gsva 1.50.0+ds-1 (tar) [1237 kB] 136s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gsva 1.50.0+ds-1 (diff) [3932 B] 137s gpgv: Signature made Fri Dec 1 06:50:49 2023 UTC 137s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 137s gpgv: issuer "tillea@rki.de" 137s gpgv: Can't check signature: No public key 137s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gsva_1.50.0+ds-1.dsc: no acceptable signature found 137s autopkgtest [17:36:23]: testing package r-bioc-gsva version 1.50.0+ds-1 137s autopkgtest [17:36:23]: build not needed 140s autopkgtest [17:36:26]: test run-unit-test: preparing testbed 141s Reading package lists... 142s Building dependency tree... 142s Reading state information... 142s Starting pkgProblemResolver with broken count: 0 143s Starting 2 pkgProblemResolver with broken count: 0 143s Done 144s The following additional packages will be installed: 144s curl fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 144s hdf5-helpers libaec-dev libaec0 libasan8 libatomic1 libblas3 libblosc1 144s libboost-dev libboost1.83-dev libc-dev-bin libc6-dev libcairo2 libcrypt-dev 144s libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 144s libgcc-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 144s libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 144s libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 144s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 144s libjpeg8-dev liblapack3 liblerc4 liblsan0 libnsl-dev libpango-1.0-0 144s libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpixman-1-0 144s libpng16-16t64 libpsl5t64 libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 144s libssl-dev libstdc++-13-dev libsz2 libtcl8.6 libthai-data libthai0 libtiff6 144s libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 144s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6t64 144s linux-libc-dev littler r-base-core r-bioc-annotate r-bioc-annotationdbi 144s r-bioc-beachmat r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel 144s r-bioc-biocsingular r-bioc-biostrings r-bioc-delayedarray 144s r-bioc-delayedmatrixstats r-bioc-genomeinfodb r-bioc-genomeinfodbdata 144s r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva 144s r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics 144s r-bioc-rhdf5 r-bioc-rhdf5filters r-bioc-rhdf5lib r-bioc-s4arrays 144s r-bioc-s4vectors r-bioc-scaledmatrix r-bioc-singlecellexperiment 144s r-bioc-sparsearray r-bioc-sparsematrixstats r-bioc-summarizedexperiment 144s r-bioc-xvector r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh 144s r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli 144s r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 144s r-cran-fastmap r-cran-fastmatch r-cran-formatr r-cran-futile.logger 144s r-cran-futile.options r-cran-glue r-cran-httr r-cran-irlba r-cran-jsonlite 144s r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-matrix 144s r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl 144s r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-r6 144s r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-rsvd 144s r-cran-runit r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 144s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 144s Suggested packages: 144s libboost-doc libboost1.83-doc libboost-atomic1.83-dev 144s libboost-chrono1.83-dev libboost-container1.83-dev libboost-context1.83-dev 144s libboost-contract1.83-dev libboost-coroutine1.83-dev 144s libboost-date-time1.83-dev libboost-exception1.83-dev libboost-fiber1.83-dev 144s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 144s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 144s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 144s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 144s libboost-numpy1.83-dev libboost-program-options1.83-dev 144s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 144s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 144s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 144s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 144s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 144s glibc-doc manpages-dev libcurl4-doc libidn-dev libkrb5-dev libldap2-dev 144s librtmp-dev libssh2-1-dev pkg-config libhdf5-doc libssl-doc libstdc++-13-doc 144s tcl8.6 tk8.6 elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html 144s r-bioc-genefilter r-bioc-go.db r-bioc-org.hs.eg.db r-bioc-biocstyle 144s r-cran-knitr r-cran-testthat r-cran-rmarkdown r-cran-rcmdcheck r-bioc-all 144s r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 r-cran-foreach r-cran-bbmisc 144s r-cran-doparallel r-bioc-variantannotation r-bioc-genomicalignments 144s r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-residualmatrix 144s r-bioc-bsgenome r-bioc-genomicfeatures r-cran-lobstr r-cran-profmem 144s r-cran-r.utils r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub 144s r-bioc-dexseq r-bioc-edger r-cran-digest r-cran-sparsem r-bioc-rbgl 144s r-cran-cluster r-bioc-limma r-cran-rcolorbrewer r-cran-shiny 144s r-cran-shinydashboard r-cran-ggplot2 r-cran-plotly r-cran-future 144s r-cran-promises r-cran-shinyjs r-bioc-experimenthub r-cran-markdown 144s r-cran-bench r-cran-dplyr r-cran-mockery r-cran-tinytest r-bioc-scrnaseq 144s r-cran-rtsne r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-pillar 144s r-cran-rstudioapi r-cran-rmysql r-cran-getopt r-cran-inline r-cran-rmpi 144s r-cran-rlecuyer r-cran-spelling r-cran-plm r-cran-zoo r-cran-survival 144s Recommended packages: 144s manpages manpages-dev libc-devtools r-recommended r-base-dev r-doc-html 144s r-cran-testthat r-cran-callr r-cran-covr r-cran-digest r-cran-htmltools 144s r-cran-htmlwidgets r-cran-knitr r-cran-mockery r-cran-processx r-cran-ps 144s r-cran-rmarkdown r-cran-rprojroot r-cran-rstudioapi r-cran-tibble 144s r-cran-whoami r-cran-withr r-cran-bench r-cran-brio r-cran-decor r-cran-desc 144s r-cran-ggplot2 r-cran-lobstr r-cran-progress r-cran-scales r-cran-spelling 144s r-cran-later r-cran-magrittr r-cran-httpuv r-cran-webutils r-cran-testit 144s r-cran-survival r-cran-dplyr r-cran-waldo r-cran-jpeg r-cran-readr 144s r-cran-xml2 r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse 144s r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-sodium r-cran-fs 144s r-cran-pillar r-cran-usethis r-cran-dbitest r-cran-gert r-cran-gh r-cran-hms 144s r-cran-rvest r-cran-plyr r-cran-generics r-cran-pkgdown r-cran-zeallot 144s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 144s x11-xserver-utils 145s The following packages will be REMOVED: 145s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 145s The following NEW packages will be installed: 145s autopkgtest-satdep fontconfig fontconfig-config fonts-dejavu-core 145s fonts-dejavu-mono hdf5-helpers libaec-dev libaec0 libasan8 libatomic1 145s libblas3 libblosc1 libboost-dev libboost1.83-dev libc-dev-bin libc6-dev 145s libcairo2 libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 145s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran5 libgomp1 145s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 145s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 145s libhwasan0 libice6 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 145s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev liblapack3 liblerc4 liblsan0 145s libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 145s libpaper-utils libpaper1 libpixman-1-0 libpng16-16t64 libpsl5t64 145s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 145s libsz2 libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev libtirpc3t64 145s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 145s libxrender1 libxss1 libxt6t64 linux-libc-dev littler r-base-core 145s r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase 145s r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular 145s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats 145s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicranges 145s r-bioc-graph r-bioc-gseabase r-bioc-gsva r-bioc-hdf5array r-bioc-iranges 145s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhdf5 r-bioc-rhdf5filters 145s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 145s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 145s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 145s r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 145s r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11 r-cran-crayon 145s r-cran-curl r-cran-dbi r-cran-fastmap r-cran-fastmatch r-cran-formatr 145s r-cran-futile.logger r-cran-futile.options r-cran-glue r-cran-httr 145s r-cran-irlba r-cran-jsonlite r-cran-lambda.r r-cran-lattice r-cran-lifecycle 145s r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 145s r-cran-openssl r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png 145s r-cran-r6 r-cran-rcpp r-cran-rcurl r-cran-rlang r-cran-rsqlite r-cran-rsvd 145s r-cran-runit r-cran-snow r-cran-sys r-cran-vctrs r-cran-xml r-cran-xtable 145s rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 145s The following packages will be upgraded: 145s curl 145s 1 upgraded, 168 newly installed, 5 to remove and 0 not upgraded. 145s Need to get 176 MB/176 MB of archives. 145s After this operation, 525 MB of additional disk space will be used. 145s Get:1 /tmp/autopkgtest.dr8pZL/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [732 B] 145s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 145s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 145s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 145s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 145s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 145s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 145s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 145s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 145s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 145s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 145s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 145s Get:13 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 145s Get:14 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 145s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 145s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 145s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 145s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 145s Get:19 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 145s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 145s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 145s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 146s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 146s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 146s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 146s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 146s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 146s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 146s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 146s Get:30 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 146s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 146s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 146s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 146s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 146s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 146s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 146s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 146s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 146s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 146s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 146s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 146s Get:42 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 146s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 146s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 146s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 146s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 146s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 146s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 146s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 146s Get:50 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 147s Get:51 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 147s Get:52 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 147s Get:53 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 147s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 147s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 147s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 147s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 147s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 147s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 147s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 147s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 147s Get:62 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 147s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 147s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 147s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 147s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 147s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 147s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 147s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 147s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 147s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 147s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 147s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 147s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 147s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 147s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 147s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 147s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 147s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 147s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 147s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 147s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 147s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 147s Get:84 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 147s Get:85 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 147s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 147s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 147s Get:88 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 148s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 148s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 148s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 148s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 148s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 148s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 148s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 148s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 148s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 148s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 148s Get:99 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 148s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 148s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 148s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 148s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 149s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 149s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 149s Get:106 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 149s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 149s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 149s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 149s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 149s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 149s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 149s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 149s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 149s Get:115 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 149s Get:116 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 149s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 149s Get:118 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 149s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 149s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 149s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 149s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 149s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 149s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 150s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 150s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 150s Get:127 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 150s Get:128 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 150s Get:129 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 150s Get:130 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 150s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 150s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 150s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 151s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 151s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 151s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 151s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 151s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 151s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 151s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 151s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 151s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 151s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 151s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 151s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 151s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 151s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 151s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 151s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 151s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 151s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 151s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scaledmatrix all 1.10.0+dfsg-1 [320 kB] 151s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-irlba arm64 2.3.5.1-2 [293 kB] 151s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] 151s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocsingular arm64 1.18.0+ds-1 [350 kB] 151s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 151s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 151s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 151s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 151s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gseabase all 1.64.0+ds-1 [717 kB] 151s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 151s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 151s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 151s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 151s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 151s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 152s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gsva arm64 1.50.0+ds-1 [1081 kB] 152s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmatch arm64 1.1-4-1 [34.6 kB] 152s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 153s Preconfiguring packages ... 153s Fetched 176 MB in 7s (24.7 MB/s) 153s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 153s wget depends on libpsl5 (>= 0.16.0). 153s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 153s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 153s 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 153s Removing libpsl5:arm64 (0.21.2-1build1) ... 153s Selecting previously unselected package libpsl5t64:arm64. 153s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 153s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 153s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 153s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 153s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 154s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 154s Selecting previously unselected package libcurl4t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 154s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 154s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 154s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 154s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 154s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 154s Removing libpng16-16:arm64 (1.6.43-1) ... 154s Selecting previously unselected package libpng16-16t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 154s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 154s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 154s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 154s parted depends on libreadline8 (>= 6.0). 154s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 154s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 154s gpgsm depends on libreadline8 (>= 6.0). 154s gpgconf depends on libreadline8 (>= 6.0). 154s gpg depends on libreadline8 (>= 6.0). 154s gawk depends on libreadline8 (>= 6.0). 154s fdisk depends on libreadline8 (>= 6.0). 154s 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 154s Removing libreadline8:arm64 (8.2-3) ... 154s Selecting previously unselected package libreadline8t64:arm64. 154s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 154s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 155s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 155s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 155s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 155s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 155s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 155s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 155s lsof depends on libtirpc3 (>= 1.0.2). 155s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 155s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 155s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 155s iproute2 depends on libtirpc3 (>= 1.0.2). 155s 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 155s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 155s Selecting previously unselected package libtirpc3t64:arm64. 155s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 155s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 155s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 155s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 155s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 155s Selecting previously unselected package fonts-dejavu-mono. 155s Preparing to unpack .../001-fonts-dejavu-mono_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-mono (2.37-8) ... 155s Selecting previously unselected package fonts-dejavu-core. 155s Preparing to unpack .../002-fonts-dejavu-core_2.37-8_all.deb ... 155s Unpacking fonts-dejavu-core (2.37-8) ... 155s Selecting previously unselected package fontconfig-config. 155s Preparing to unpack .../003-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 156s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 156s Selecting previously unselected package libfontconfig1:arm64. 156s Preparing to unpack .../004-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 156s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 156s Selecting previously unselected package fontconfig. 156s Preparing to unpack .../005-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 156s Unpacking fontconfig (2.15.0-1ubuntu1) ... 156s Selecting previously unselected package hdf5-helpers. 156s Preparing to unpack .../006-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 156s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 156s Selecting previously unselected package libaec0:arm64. 156s Preparing to unpack .../007-libaec0_1.1.2-1_arm64.deb ... 156s Unpacking libaec0:arm64 (1.1.2-1) ... 156s Selecting previously unselected package libasan8:arm64. 156s Preparing to unpack .../008-libasan8_14-20240303-1ubuntu1_arm64.deb ... 156s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 156s Selecting previously unselected package libatomic1:arm64. 156s Preparing to unpack .../009-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 156s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 156s Selecting previously unselected package libblas3:arm64. 156s Preparing to unpack .../010-libblas3_3.12.0-3_arm64.deb ... 156s Unpacking libblas3:arm64 (3.12.0-3) ... 157s Selecting previously unselected package libsnappy1v5:arm64. 157s Preparing to unpack .../011-libsnappy1v5_1.1.10-1_arm64.deb ... 157s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 157s Selecting previously unselected package libblosc1:arm64. 157s Preparing to unpack .../012-libblosc1_1.21.5+ds-1_arm64.deb ... 157s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 157s Selecting previously unselected package libgomp1:arm64. 157s Preparing to unpack .../013-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libitm1:arm64. 157s Preparing to unpack .../014-libitm1_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package liblsan0:arm64. 157s Preparing to unpack .../015-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libtsan2:arm64. 157s Preparing to unpack .../016-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libubsan1:arm64. 157s Preparing to unpack .../017-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libhwasan0:arm64. 157s Preparing to unpack .../018-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 157s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 157s Selecting previously unselected package libgcc-13-dev:arm64. 157s Preparing to unpack .../019-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 157s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 158s Selecting previously unselected package libc-dev-bin. 158s Preparing to unpack .../020-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 158s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 158s Selecting previously unselected package linux-libc-dev:arm64. 158s Preparing to unpack .../021-linux-libc-dev_6.8.0-11.11_arm64.deb ... 158s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 158s Selecting previously unselected package libcrypt-dev:arm64. 158s Preparing to unpack .../022-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 158s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 158s Selecting previously unselected package libtirpc-dev:arm64. 158s Preparing to unpack .../023-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 158s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 158s Selecting previously unselected package libnsl-dev:arm64. 158s Preparing to unpack .../024-libnsl-dev_1.3.0-3_arm64.deb ... 158s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 158s Selecting previously unselected package rpcsvc-proto. 158s Preparing to unpack .../025-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 158s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 158s Selecting previously unselected package libc6-dev:arm64. 158s Preparing to unpack .../026-libc6-dev_2.39-0ubuntu2_arm64.deb ... 158s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 159s Selecting previously unselected package libstdc++-13-dev:arm64. 159s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 159s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 159s Selecting previously unselected package libboost1.83-dev:arm64. 159s Preparing to unpack .../028-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 159s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 167s Selecting previously unselected package libboost-dev:arm64. 167s Preparing to unpack .../029-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 167s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 167s Selecting previously unselected package libpixman-1-0:arm64. 167s Preparing to unpack .../030-libpixman-1-0_0.42.2-1_arm64.deb ... 167s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 167s Selecting previously unselected package libxcb-render0:arm64. 167s Preparing to unpack .../031-libxcb-render0_1.15-1_arm64.deb ... 167s Unpacking libxcb-render0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxcb-shm0:arm64. 167s Preparing to unpack .../032-libxcb-shm0_1.15-1_arm64.deb ... 167s Unpacking libxcb-shm0:arm64 (1.15-1) ... 167s Selecting previously unselected package libxrender1:arm64. 167s Preparing to unpack .../033-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 167s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 167s Selecting previously unselected package libcairo2:arm64. 167s Preparing to unpack .../034-libcairo2_1.18.0-1_arm64.deb ... 167s Unpacking libcairo2:arm64 (1.18.0-1) ... 168s Selecting previously unselected package libcurl4-openssl-dev:arm64. 168s Preparing to unpack .../035-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 168s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 168s Selecting previously unselected package libdatrie1:arm64. 168s Preparing to unpack .../036-libdatrie1_0.2.13-3_arm64.deb ... 168s Unpacking libdatrie1:arm64 (0.2.13-3) ... 168s Selecting previously unselected package libdeflate0:arm64. 168s Preparing to unpack .../037-libdeflate0_1.19-1_arm64.deb ... 168s Unpacking libdeflate0:arm64 (1.19-1) ... 168s Selecting previously unselected package libgfortran5:arm64. 168s Preparing to unpack .../038-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 168s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 168s Selecting previously unselected package libgraphite2-3:arm64. 168s Preparing to unpack .../039-libgraphite2-3_1.3.14-2_arm64.deb ... 168s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 168s Selecting previously unselected package libharfbuzz0b:arm64. 168s Preparing to unpack .../040-libharfbuzz0b_8.3.0-2_arm64.deb ... 168s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 168s Selecting previously unselected package libsz2:arm64. 168s Preparing to unpack .../041-libsz2_1.1.2-1_arm64.deb ... 168s Unpacking libsz2:arm64 (1.1.2-1) ... 168s Selecting previously unselected package libhdf5-103-1:arm64. 168s Preparing to unpack .../042-libhdf5-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 168s Unpacking libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 168s Selecting previously unselected package libhdf5-cpp-103-1:arm64. 169s Preparing to unpack .../043-libhdf5-cpp-103-1_1.10.10+repack-3ubuntu1_arm64.deb ... 169s Unpacking libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 169s Selecting previously unselected package libhdf5-fortran-102:arm64. 169s Preparing to unpack .../044-libhdf5-fortran-102_1.10.10+repack-3ubuntu1_arm64.deb ... 169s Unpacking libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 169s Selecting previously unselected package libhdf5-hl-100:arm64. 169s Preparing to unpack .../045-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 169s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 169s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 169s Preparing to unpack .../046-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 169s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 169s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 169s Preparing to unpack .../047-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 169s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 169s Selecting previously unselected package zlib1g-dev:arm64. 169s Preparing to unpack .../048-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 169s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 169s Selecting previously unselected package libjpeg-turbo8:arm64. 169s Preparing to unpack .../049-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 169s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 169s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 169s Preparing to unpack .../050-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 169s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 169s Selecting previously unselected package libjpeg8:arm64. 169s Preparing to unpack .../051-libjpeg8_8c-2ubuntu11_arm64.deb ... 169s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 169s Selecting previously unselected package libjpeg8-dev:arm64. 169s Preparing to unpack .../052-libjpeg8-dev_8c-2ubuntu11_arm64.deb ... 169s Unpacking libjpeg8-dev:arm64 (8c-2ubuntu11) ... 169s Selecting previously unselected package libjpeg-dev:arm64. 169s Preparing to unpack .../053-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 169s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 169s Selecting previously unselected package libaec-dev:arm64. 169s Preparing to unpack .../054-libaec-dev_1.1.2-1_arm64.deb ... 169s Unpacking libaec-dev:arm64 (1.1.2-1) ... 169s Selecting previously unselected package libssl-dev:arm64. 169s Preparing to unpack .../055-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 169s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 170s Selecting previously unselected package libhdf5-dev. 170s Preparing to unpack .../056-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 170s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 170s Selecting previously unselected package x11-common. 170s Preparing to unpack .../057-x11-common_1%3a7.7+23ubuntu2_all.deb ... 170s Unpacking x11-common (1:7.7+23ubuntu2) ... 170s Selecting previously unselected package libice6:arm64. 170s Preparing to unpack .../058-libice6_2%3a1.0.10-1build2_arm64.deb ... 170s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 170s Selecting previously unselected package liblapack3:arm64. 170s Preparing to unpack .../059-liblapack3_3.12.0-3_arm64.deb ... 170s Unpacking liblapack3:arm64 (3.12.0-3) ... 170s Selecting previously unselected package liblerc4:arm64. 171s Preparing to unpack .../060-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 171s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 171s Selecting previously unselected package libthai-data. 171s Preparing to unpack .../061-libthai-data_0.1.29-2_all.deb ... 171s Unpacking libthai-data (0.1.29-2) ... 171s Selecting previously unselected package libthai0:arm64. 171s Preparing to unpack .../062-libthai0_0.1.29-2_arm64.deb ... 171s Unpacking libthai0:arm64 (0.1.29-2) ... 171s Selecting previously unselected package libpango-1.0-0:arm64. 171s Preparing to unpack .../063-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 171s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 171s Selecting previously unselected package libpangoft2-1.0-0:arm64. 171s Preparing to unpack .../064-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 171s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 171s Selecting previously unselected package libpangocairo-1.0-0:arm64. 171s Preparing to unpack .../065-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 171s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 171s Selecting previously unselected package libpaper1:arm64. 171s Preparing to unpack .../066-libpaper1_1.1.29_arm64.deb ... 171s Unpacking libpaper1:arm64 (1.1.29) ... 171s Selecting previously unselected package libpaper-utils. 171s Preparing to unpack .../067-libpaper-utils_1.1.29_arm64.deb ... 171s Unpacking libpaper-utils (1.1.29) ... 171s Selecting previously unselected package libsharpyuv0:arm64. 171s Preparing to unpack .../068-libsharpyuv0_1.3.2-0.4_arm64.deb ... 171s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 171s Selecting previously unselected package libsm6:arm64. 171s Preparing to unpack .../069-libsm6_2%3a1.2.3-1build2_arm64.deb ... 171s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 171s Selecting previously unselected package libtcl8.6:arm64. 171s Preparing to unpack .../070-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 171s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 171s Selecting previously unselected package libjbig0:arm64. 172s Preparing to unpack .../071-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 172s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 172s Selecting previously unselected package libwebp7:arm64. 172s Preparing to unpack .../072-libwebp7_1.3.2-0.4_arm64.deb ... 172s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 172s Selecting previously unselected package libtiff6:arm64. 172s Preparing to unpack .../073-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 172s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 172s Selecting previously unselected package libxft2:arm64. 172s Preparing to unpack .../074-libxft2_2.3.6-1_arm64.deb ... 172s Unpacking libxft2:arm64 (2.3.6-1) ... 172s Selecting previously unselected package libxss1:arm64. 172s Preparing to unpack .../075-libxss1_1%3a1.2.3-1build2_arm64.deb ... 172s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 172s Selecting previously unselected package libtk8.6:arm64. 172s Preparing to unpack .../076-libtk8.6_8.6.13-2_arm64.deb ... 172s Unpacking libtk8.6:arm64 (8.6.13-2) ... 172s Selecting previously unselected package libxt6t64:arm64. 172s Preparing to unpack .../077-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 172s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 172s Selecting previously unselected package zip. 172s Preparing to unpack .../078-zip_3.0-13_arm64.deb ... 172s Unpacking zip (3.0-13) ... 172s Selecting previously unselected package unzip. 172s Preparing to unpack .../079-unzip_6.0-28ubuntu3_arm64.deb ... 172s Unpacking unzip (6.0-28ubuntu3) ... 172s Selecting previously unselected package xdg-utils. 172s Preparing to unpack .../080-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 172s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 172s Selecting previously unselected package r-base-core. 172s Preparing to unpack .../081-r-base-core_4.3.3-2build1_arm64.deb ... 172s Unpacking r-base-core (4.3.3-2build1) ... 174s Selecting previously unselected package r-cran-littler. 174s Preparing to unpack .../082-r-cran-littler_0.3.19-1_arm64.deb ... 174s Unpacking r-cran-littler (0.3.19-1) ... 174s Selecting previously unselected package littler. 174s Preparing to unpack .../083-littler_0.3.19-1_all.deb ... 174s Unpacking littler (0.3.19-1) ... 174s Selecting previously unselected package r-bioc-biocgenerics. 174s Preparing to unpack .../084-r-bioc-biocgenerics_0.48.1-2_all.deb ... 174s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 174s Selecting previously unselected package r-bioc-biobase. 174s Preparing to unpack .../085-r-bioc-biobase_2.62.0-1_arm64.deb ... 174s Unpacking r-bioc-biobase (2.62.0-1) ... 174s Selecting previously unselected package r-bioc-s4vectors. 174s Preparing to unpack .../086-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 174s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 174s Selecting previously unselected package r-bioc-iranges. 174s Preparing to unpack .../087-r-bioc-iranges_2.36.0-1_arm64.deb ... 174s Unpacking r-bioc-iranges (2.36.0-1) ... 175s Selecting previously unselected package r-cran-dbi. 175s Preparing to unpack .../088-r-cran-dbi_1.2.2-1_all.deb ... 175s Unpacking r-cran-dbi (1.2.2-1) ... 175s Selecting previously unselected package r-cran-bit. 175s Preparing to unpack .../089-r-cran-bit_4.0.5-1_arm64.deb ... 175s Unpacking r-cran-bit (4.0.5-1) ... 175s Selecting previously unselected package r-cran-bit64. 175s Preparing to unpack .../090-r-cran-bit64_4.0.5-1_arm64.deb ... 175s Unpacking r-cran-bit64 (4.0.5-1) ... 175s Selecting previously unselected package r-cran-rlang. 175s Preparing to unpack .../091-r-cran-rlang_1.1.3-1_arm64.deb ... 175s Unpacking r-cran-rlang (1.1.3-1) ... 175s Selecting previously unselected package r-cran-cli. 175s Preparing to unpack .../092-r-cran-cli_3.6.2-1_arm64.deb ... 175s Unpacking r-cran-cli (3.6.2-1) ... 175s Selecting previously unselected package r-cran-glue. 175s Preparing to unpack .../093-r-cran-glue_1.7.0-1_arm64.deb ... 175s Unpacking r-cran-glue (1.7.0-1) ... 175s Selecting previously unselected package r-cran-lifecycle. 175s Preparing to unpack .../094-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 175s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 175s Selecting previously unselected package r-cran-vctrs. 176s Preparing to unpack .../095-r-cran-vctrs_0.6.5-1_arm64.deb ... 176s Unpacking r-cran-vctrs (0.6.5-1) ... 176s Selecting previously unselected package r-cran-blob. 176s Preparing to unpack .../096-r-cran-blob_1.2.4-1_all.deb ... 176s Unpacking r-cran-blob (1.2.4-1) ... 176s Selecting previously unselected package r-cran-fastmap. 176s Preparing to unpack .../097-r-cran-fastmap_1.1.1-1_arm64.deb ... 176s Unpacking r-cran-fastmap (1.1.1-1) ... 176s Selecting previously unselected package r-cran-cachem. 176s Preparing to unpack .../098-r-cran-cachem_1.0.8-1_arm64.deb ... 176s Unpacking r-cran-cachem (1.0.8-1) ... 176s Selecting previously unselected package r-cran-memoise. 176s Preparing to unpack .../099-r-cran-memoise_2.0.1-1_all.deb ... 176s Unpacking r-cran-memoise (2.0.1-1) ... 176s Selecting previously unselected package r-cran-pkgconfig. 176s Preparing to unpack .../100-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 176s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 176s Selecting previously unselected package r-cran-plogr. 176s Preparing to unpack .../101-r-cran-plogr_0.2.0-3build1_all.deb ... 176s Unpacking r-cran-plogr (0.2.0-3build1) ... 176s Selecting previously unselected package r-cran-cpp11. 176s Preparing to unpack .../102-r-cran-cpp11_0.4.7-1_all.deb ... 176s Unpacking r-cran-cpp11 (0.4.7-1) ... 176s Selecting previously unselected package r-cran-rsqlite. 176s Preparing to unpack .../103-r-cran-rsqlite_2.3.4-1_arm64.deb ... 176s Unpacking r-cran-rsqlite (2.3.4-1) ... 176s Selecting previously unselected package r-cran-curl. 177s Preparing to unpack .../104-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 177s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 177s Selecting previously unselected package r-cran-jsonlite. 177s Preparing to unpack .../105-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 177s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 177s Selecting previously unselected package r-cran-mime. 177s Preparing to unpack .../106-r-cran-mime_0.12-1_arm64.deb ... 177s Unpacking r-cran-mime (0.12-1) ... 177s Selecting previously unselected package r-cran-sys. 177s Preparing to unpack .../107-r-cran-sys_3.4.2-1_arm64.deb ... 177s Unpacking r-cran-sys (3.4.2-1) ... 177s Selecting previously unselected package r-cran-askpass. 177s Preparing to unpack .../108-r-cran-askpass_1.2.0-1_arm64.deb ... 177s Unpacking r-cran-askpass (1.2.0-1) ... 177s Selecting previously unselected package r-cran-openssl. 177s Preparing to unpack .../109-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 177s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 177s Selecting previously unselected package r-cran-r6. 177s Preparing to unpack .../110-r-cran-r6_2.5.1-1_all.deb ... 177s Unpacking r-cran-r6 (2.5.1-1) ... 177s Selecting previously unselected package r-cran-httr. 177s Preparing to unpack .../111-r-cran-httr_1.4.7+dfsg-1_all.deb ... 177s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 177s Selecting previously unselected package r-cran-png. 177s Preparing to unpack .../112-r-cran-png_0.1-8-1_arm64.deb ... 177s Unpacking r-cran-png (0.1-8-1) ... 177s Selecting previously unselected package r-bioc-zlibbioc. 177s Preparing to unpack .../113-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 177s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 177s Selecting previously unselected package r-bioc-xvector. 178s Preparing to unpack .../114-r-bioc-xvector_0.42.0-1_arm64.deb ... 178s Unpacking r-bioc-xvector (0.42.0-1) ... 178s Selecting previously unselected package r-cran-bitops. 178s Preparing to unpack .../115-r-cran-bitops_1.0-7-1_arm64.deb ... 178s Unpacking r-cran-bitops (1.0-7-1) ... 178s Selecting previously unselected package r-cran-rcurl. 178s Preparing to unpack .../116-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 178s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 178s Selecting previously unselected package r-bioc-genomeinfodbdata. 178s Preparing to unpack .../117-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 178s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 178s Selecting previously unselected package r-bioc-genomeinfodb. 178s Preparing to unpack .../118-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 178s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 178s Selecting previously unselected package r-cran-crayon. 178s Preparing to unpack .../119-r-cran-crayon_1.5.2-1_all.deb ... 178s Unpacking r-cran-crayon (1.5.2-1) ... 178s Selecting previously unselected package r-bioc-biostrings. 178s Preparing to unpack .../120-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 178s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 179s Selecting previously unselected package r-bioc-keggrest. 179s Preparing to unpack .../121-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 179s Selecting previously unselected package r-bioc-annotationdbi. 179s Preparing to unpack .../122-r-bioc-annotationdbi_1.64.1-1_all.deb ... 179s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 179s Selecting previously unselected package r-cran-xml. 179s Preparing to unpack .../123-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 179s Unpacking r-cran-xml (3.99-0.16.1-1) ... 179s Selecting previously unselected package r-cran-xtable. 179s Preparing to unpack .../124-r-cran-xtable_1%3a1.8-4-2_all.deb ... 179s Unpacking r-cran-xtable (1:1.8-4-2) ... 179s Selecting previously unselected package r-bioc-annotate. 179s Preparing to unpack .../125-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 179s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 179s Selecting previously unselected package r-cran-lattice. 180s Preparing to unpack .../126-r-cran-lattice_0.22-5-1_arm64.deb ... 180s Unpacking r-cran-lattice (0.22-5-1) ... 180s Selecting previously unselected package r-cran-matrix. 180s Preparing to unpack .../127-r-cran-matrix_1.6-5-1_arm64.deb ... 180s Unpacking r-cran-matrix (1.6-5-1) ... 180s Selecting previously unselected package r-cran-matrixstats. 180s Preparing to unpack .../128-r-cran-matrixstats_1.2.0-1_arm64.deb ... 180s Unpacking r-cran-matrixstats (1.2.0-1) ... 180s Selecting previously unselected package r-bioc-matrixgenerics. 180s Preparing to unpack .../129-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 180s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 180s Selecting previously unselected package r-cran-abind. 180s Preparing to unpack .../130-r-cran-abind_1.4-5-2_all.deb ... 180s Unpacking r-cran-abind (1.4-5-2) ... 180s Selecting previously unselected package r-bioc-s4arrays. 180s Preparing to unpack .../131-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 180s Selecting previously unselected package r-bioc-sparsearray. 180s Preparing to unpack .../132-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 180s Selecting previously unselected package r-bioc-delayedarray. 180s Preparing to unpack .../133-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 180s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 181s Selecting previously unselected package r-cran-pkgkitten. 181s Preparing to unpack .../134-r-cran-pkgkitten_0.2.3-1_all.deb ... 181s Unpacking r-cran-pkgkitten (0.2.3-1) ... 181s Selecting previously unselected package r-cran-rcpp. 181s Preparing to unpack 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r-cran-irlba. 182s Preparing to unpack .../146-r-cran-irlba_2.3.5.1-2_arm64.deb ... 182s Unpacking r-cran-irlba (2.3.5.1-2) ... 182s Selecting previously unselected package r-cran-rsvd. 183s Preparing to unpack .../147-r-cran-rsvd_1.0.5-1_all.deb ... 183s Unpacking r-cran-rsvd (1.0.5-1) ... 183s Selecting previously unselected package r-bioc-biocsingular. 183s Preparing to unpack .../148-r-bioc-biocsingular_1.18.0+ds-1_arm64.deb ... 183s Unpacking r-bioc-biocsingular (1.18.0+ds-1) ... 183s Selecting previously unselected package r-bioc-sparsematrixstats. 183s Preparing to unpack .../149-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 183s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 183s Selecting previously unselected package r-bioc-delayedmatrixstats. 183s Preparing to unpack .../150-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 183s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 183s Selecting previously unselected package r-bioc-genomicranges. 183s 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(1:1.2.1-1.2) ... 189s Setting up libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 189s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 189s Setting up libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 189s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 189s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 189s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 189s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 189s Setting up r-base-core (4.3.3-2build1) ... 190s 190s Creating config file /etc/R/Renviron with new version 190s Setting up r-cran-crayon (1.5.2-1) ... 190s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 190s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 190s Setting up r-cran-fastmatch (1.1-4-1) ... 190s Setting up r-cran-futile.options (1.0.1-3build1) ... 190s Setting up r-cran-lattice (0.22-5-1) ... 190s Setting up r-cran-formatr (1.14-1) ... 190s Setting up r-cran-xml (3.99-0.16.1-1) ... 190s Setting up r-cran-r6 (2.5.1-1) ... 190s Setting up r-cran-pkgkitten (0.2.3-1) ... 190s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 190s Setting up r-cran-littler (0.3.19-1) ... 190s Setting up r-cran-bh (1.84.0-1) ... 190s Setting up r-cran-rcpp (1.0.12-1) ... 190s Setting up r-cran-curl (5.2.0+dfsg-1) ... 190s Setting up r-cran-codetools (0.2-19-1) ... 190s Setting up r-bioc-biocgenerics (0.48.1-2) ... 190s Setting up r-cran-rlang (1.1.3-1) ... 190s Setting up r-cran-matrixstats (1.2.0-1) ... 190s Setting up littler (0.3.19-1) ... 190s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 190s Setting up r-cran-sys (3.4.2-1) ... 190s Setting up r-cran-plogr (0.2.0-3build1) ... 190s Setting up r-cran-mime (0.12-1) ... 190s Setting up r-cran-abind (1.4-5-2) ... 190s Setting up r-cran-lambda.r (1.2.4-2build1) ... 190s Setting up r-cran-dbi (1.2.2-1) ... 190s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 190s Setting up r-cran-snow (1:0.4.4-2) ... 190s Setting up r-cran-glue (1.7.0-1) ... 190s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 190s Setting up r-cran-bit (4.0.5-1) ... 190s Setting up r-cran-xtable (1:1.8-4-2) ... 190s Setting up r-cran-cli (3.6.2-1) ... 190s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 190s Setting up r-cran-bitops (1.0-7-1) ... 190s Setting up r-cran-bit64 (4.0.5-1) ... 190s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 190s Setting up r-cran-askpass (1.2.0-1) ... 190s Setting up r-cran-fastmap (1.1.1-1) ... 190s Setting up r-cran-png (0.1-8-1) ... 190s Setting up r-bioc-biobase (2.62.0-1) ... 190s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 190s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 190s Setting up r-cran-cpp11 (0.4.7-1) ... 190s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 190s Setting up r-cran-runit (0.4.32-3) ... 190s Setting up r-cran-futile.logger (1.4.3-4build1) ... 190s Setting up r-cran-matrix (1.6-5-1) ... 190s Setting up r-cran-irlba (2.3.5.1-2) ... 190s Setting up r-cran-cachem (1.0.8-1) ... 190s Setting up r-bioc-iranges (2.36.0-1) ... 190s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 190s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 190s Setting up r-cran-vctrs (0.6.5-1) ... 190s Setting up r-bioc-graph (1.80.0-1) ... 190s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 190s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 190s Setting up r-bioc-biocparallel (1.36.0-1) ... 190s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 190s Setting up r-cran-rsvd (1.0.5-1) ... 190s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 190s Setting up r-cran-httr (1.4.7+dfsg-1) ... 190s Setting up r-cran-memoise (2.0.1-1) ... 190s Setting up r-cran-blob (1.2.4-1) ... 190s Setting up r-bioc-xvector (0.42.0-1) ... 190s Setting up r-cran-rsqlite (2.3.4-1) ... 190s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 190s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 190s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 190s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 190s Setting up r-bioc-hdf5array (1.30.1-1) ... 190s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 190s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 190s Setting up r-bioc-annotationdbi (1.64.1-1) ... 190s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 190s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 190s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 190s Setting up r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 190s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 190s Setting up r-bioc-gseabase (1.64.0+ds-1) ... 190s Setting up r-bioc-biocsingular (1.18.0+ds-1) ... 190s Setting up r-bioc-gsva (1.50.0+ds-1) ... 190s Setting up autopkgtest-satdep (0) ... 190s Processing triggers for man-db (2.12.0-3) ... 191s Processing triggers for install-info (7.1-3) ... 192s Processing triggers for libc-bin (2.39-0ubuntu2) ... 211s (Reading database ... 104430 files and directories currently installed.) 211s Removing autopkgtest-satdep (0) ... 212s autopkgtest [17:37:38]: test run-unit-test: [----------------------- 212s BEGIN TEST runTests.R 212s 212s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 212s Copyright (C) 2024 The R Foundation for Statistical Computing 212s Platform: aarch64-unknown-linux-gnu (64-bit) 212s 212s R is free software and comes with ABSOLUTELY NO WARRANTY. 212s You are welcome to redistribute it under certain conditions. 212s Type 'license()' or 'licence()' for distribution details. 212s 212s R is a collaborative project with many contributors. 212s Type 'contributors()' for more information and 212s 'citation()' on how to cite R or R packages in publications. 212s 212s Type 'demo()' for some demos, 'help()' for on-line help, or 212s 'help.start()' for an HTML browser interface to help. 212s Type 'q()' to quit R. 212s 213s > BiocGenerics:::testPackage("GSVA") 239s Estimating PLAGE scores for 2 gene sets. 239s | | | 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100% 272s 272s [1] "Normalizing..." 272s Estimating GSVA scores for 2 gene sets. 272s Estimating ECDFs with Gaussian kernels 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating GSVA scores for 2 gene sets. 272s Estimating ECDFs with Gaussian kernels 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating PLAGE scores for 2 gene sets. 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating PLAGE scores for 2 gene sets. 272s Please bear in mind that this method first scales the values of the gene 272s expression data. In order to take advantage of the sparse Matrix type, the scaling 272s will only be applied to the non-zero values of the data. This is a provisional 272s solution in order to give support to the dgCMatrix format. 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating combined z-scores for 2 gene sets. 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating combined z-scores for Please bear in mind that this method first scales the values of the gene 272s expression data. In order to take advantage of the 2 gene sets. 272s sparse Matrix type, the scaling 272s will only be applied to the non-zero values of the data. This is a provisional 272s solution in order to give support to the dgCMatrix format. 272s | | | 0% | |=================================== | 50% | |======================================================================| 100% 272s 272s Estimating ssGSEA scores for 2 gene sets. 272s [1] "Calculating ranks..." 272s [1] "Calculating absolute values from ranks..." 272s | | | 0% | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100% 272s 272s [1] "Normalizing..." 273s Estimating ssGSEA scores for 2 gene sets. 273s [1] "Calculating ranks..." 273s [1] "Calculating absolute values from ranks..." 273s | | | 0% | |======= | 10% | |============== | 20% | |===================== | 30% | |============================ | 40% | |=================================== | 50% | |========================================== | 60% | |================================================= | 70% | |======================================================== | 80% | |=============================================================== | 90% | |======================================================================| 100% 273s 273s [1] "Normalizing..." 273s [1] "Calculating ranks..." 273s [1] "Calculating absolute values from ranks..." 273s [1] "Normalizing..." 273s 273s 273s RUNIT TEST PROTOCOL -- Sat Mar 16 17:38:39 2024 273s There were 30 warnings (use warnings() to see them)*********************************************** 273s Number of test functions: 9 273s Number of errors: 0 273s Number of failures: 0 273s 273s 273s 1 Test Suite : 273s GSVA RUnit Tests - 9 test functions, 0 errors, 0 failures 273s Number of test functions: 9 273s Number of errors: 0 273s Number of failures: 0 273s 273s > 273s autopkgtest [17:38:39]: test run-unit-test: -----------------------] 274s autopkgtest [17:38:40]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - 274s run-unit-test PASS 275s autopkgtest [17:38:41]: test pkg-r-autopkgtest: preparing testbed 405s autopkgtest [17:40:51]: testbed dpkg architecture: arm64 405s autopkgtest [17:40:51]: testbed apt version: 2.7.12 405s autopkgtest [17:40:51]: @@@@@@@@@@@@@@@@@@@@ test bed setup 406s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 407s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 408s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 408s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 408s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 408s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 408s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 408s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 408s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 408s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 409s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 409s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 409s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 421s Fetched 9060 kB in 6s (1511 kB/s) 422s Reading package lists... 428s Reading package lists... 429s Building dependency tree... 429s Reading state information... 431s Calculating upgrade... 433s The following packages will be REMOVED: 433s libglib2.0-0 libssl3 433s The following NEW packages will be installed: 433s libglib2.0-0t64 libssl3t64 xdg-user-dirs 433s The following packages have been kept back: 433s curl 433s The following packages will be upgraded: 433s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 433s 5 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 433s Need to get 4592 kB of archives. 433s After this operation, 211 kB of additional disk space will be used. 433s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 433s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 434s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 434s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 434s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 434s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 434s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 434s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 436s Fetched 4592 kB in 2s (2602 kB/s) 436s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 436s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 436s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 437s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 437s udisks2 depends on libglib2.0-0 (>= 2.77.0). 437s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 437s python3-gi depends on libglib2.0-0 (>= 2.77.0). 437s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 437s netplan.io depends on libglib2.0-0 (>= 2.70.0). 437s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 437s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 437s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 437s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 437s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 437s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 437s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 437s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 437s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 437s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 437s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 437s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 437s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 437s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 437s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 437s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 437s fwupd depends on libglib2.0-0 (>= 2.79.0). 437s bolt depends on libglib2.0-0 (>= 2.56.0). 437s 437s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 437s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 437s Selecting previously unselected package libglib2.0-0t64:arm64. 437s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75825 files and directories currently installed.) 437s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 437s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 438s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 438s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 438s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 438s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 438s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 438s wget depends on libssl3 (>= 3.0.0). 438s u-boot-tools depends on libssl3 (>= 3.0.0). 438s tnftp depends on libssl3 (>= 3.0.0). 438s tcpdump depends on libssl3 (>= 3.0.0). 438s systemd-resolved depends on libssl3 (>= 3.0.0). 438s systemd depends on libssl3 (>= 3.0.0). 438s sudo depends on libssl3 (>= 3.0.0). 438s sbsigntool depends on libssl3 (>= 3.0.0). 438s rsync depends on libssl3 (>= 3.0.0). 438s python3-cryptography depends on libssl3 (>= 3.0.0). 438s openssh-server depends on libssl3 (>= 3.0.10). 438s openssh-client depends on libssl3 (>= 3.0.10). 438s mtd-utils depends on libssl3 (>= 3.0.0). 438s mokutil depends on libssl3 (>= 3.0.0). 438s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 438s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 438s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 438s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 438s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 438s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 438s libpython3.11-minimal:arm64 depends on libssl3 (>= 3.0.0). 438s libnvme1 depends on libssl3 (>= 3.0.0). 438s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 438s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 438s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 438s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 438s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 438s kmod depends on libssl3 (>= 3.0.0). 438s dhcpcd-base depends on libssl3 (>= 3.0.0). 438s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 438s 439s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75850 files and directories currently installed.) 439s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 439s Selecting previously unselected package libssl3t64:arm64. 439s (Reading database ... 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(1.3.4+ds-1build1) ... 440s Preparing to unpack .../readline-common_8.2-3.1_all.deb ... 440s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 440s Selecting previously unselected package xdg-user-dirs. 440s Preparing to unpack .../xdg-user-dirs_0.18-1_arm64.deb ... 440s Unpacking xdg-user-dirs (0.18-1) ... 440s Setting up xdg-user-dirs (0.18-1) ... 440s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 440s Setting up libtirpc-common (1.3.4+ds-1.1) ... 440s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 440s No schema files found: doing nothing. 440s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 440s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 440s Setting up openssl (3.0.13-0ubuntu1) ... 440s Setting up readline-common (8.2-3.1) ... 440s Processing triggers for man-db (2.12.0-3) ... 442s Processing triggers for install-info (7.1-3) ... 442s Processing triggers for libc-bin (2.39-0ubuntu2) ... 444s Reading package lists... 445s Building dependency tree... 445s Reading state information... 447s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 448s Hit:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease 448s Hit:2 http://ftpmaster.internal/ubuntu noble InRelease 448s Hit:3 http://ftpmaster.internal/ubuntu noble-updates InRelease 449s Hit:4 http://ftpmaster.internal/ubuntu noble-security InRelease 457s Reading package lists... 457s Reading package lists... 458s Building dependency tree... 458s Reading state information... 461s Calculating upgrade... 462s The following packages have been kept back: 462s curl 462s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 463s Reading package lists... 464s Building dependency tree... 464s Reading state information... 466s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 476s Reading package lists... 477s Building dependency tree... 477s Reading state information... 479s Starting pkgProblemResolver with broken count: 0 479s Starting 2 pkgProblemResolver with broken count: 0 479s Done 481s The following additional packages will be installed: 481s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 481s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 481s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 481s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 481s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 481s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 481s gfortran-aarch64-linux-gnu hdf5-helpers icu-devtools javascript-common 481s libaec-dev libaec0 libasan8 libatomic1 libbibtex-parser-perl libblas-dev 481s libblas3 libblosc1 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin 481s libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4-openssl-dev libcurl4t64 481s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 481s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhdf5-103-1 481s libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102 libhdf5-hl-100 481s libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libhwasan0 libice6 libicu-dev 481s libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 481s libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 481s libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 481s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 481s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 481s libjs-popper.js libjs-prettify libjs-sifter.js 481s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 481s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 481s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 481s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 481s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 481s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 481s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 481s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 481s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 481s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 481s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 481s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 481s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 481s r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase 481s r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle 481s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger 481s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 481s r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva 481s r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-limma 481s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhdf5 r-bioc-rhdf5filters 481s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 481s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 481s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 481s r-cran-askpass r-cran-backports r-cran-base64enc r-cran-base64url 481s r-cran-batchtools r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 481s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brew r-cran-bslib 481s r-cran-cachem r-cran-checkmate r-cran-cli r-cran-codetools r-cran-colorspace 481s r-cran-colourpicker r-cran-commonmark r-cran-cpp11 r-cran-crayon 481s r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-digest 481s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 481s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 481s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 481s r-cran-future.batchtools r-cran-generics r-cran-ggplot2 r-cran-globals 481s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 481s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-irlba r-cran-isoband 481s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 481s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 481s r-cran-listenv r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 481s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 481s r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly 481s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plotly 481s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 481s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 481s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-rsvd r-cran-runit 481s r-cran-sass r-cran-scales r-cran-shiny r-cran-shinydashboard r-cran-shinyjs 481s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 481s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 481s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 481s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 481s tex-common texlive-base texlive-bibtex-extra texlive-binaries 481s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 481s Suggested packages: 481s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 481s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 481s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 481s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 481s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 481s libboost-context1.83-dev libboost-contract1.83-dev 481s libboost-coroutine1.83-dev libboost-date-time1.83-dev 481s libboost-exception1.83-dev libboost-fiber1.83-dev 481s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 481s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 481s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 481s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 481s libboost-numpy1.83-dev libboost-program-options1.83-dev 481s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 481s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 481s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 481s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 481s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 481s glibc-doc libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev 481s libssh2-1-dev libhdf5-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras 481s fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libssl-doc 481s libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex 481s texlive-luatex pandoc-citeproc texlive-latex-extra context wkhtmltopdf 481s librsvg2-bin groff ghc php python ruby libjs-katex 481s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 481s r-base-html texlive-plain-generic texlive-fonts-recommended 481s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-go.db r-cran-testthat 481s r-cran-rcmdcheck r-bioc-all r-bioc-rsamtools r-bioc-affy r-bioc-deseq2 481s r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation 481s r-bioc-genomicalignments r-bioc-shortread r-bioc-residualmatrix 481s r-bioc-bsgenome r-bioc-genomicfeatures r-cran-lobstr r-cran-profmem 481s r-cran-readr r-cran-seuratobject r-cran-class r-cran-r.utils 481s r-bioc-rtracklayer r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq 481s r-cran-sparsem r-bioc-rbgl r-cran-cluster r-bioc-experimenthub 481s r-cran-markdown r-cran-biasedurn r-cran-ellipse r-cran-gplots r-cran-bench 481s r-cran-mockery r-cran-tinytest r-bioc-scrnaseq r-cran-rtsne r-cran-e1071 481s r-cran-parallelmap r-cran-rpart r-cran-roxygen2 r-cran-ff r-cran-covr 481s r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-jpeg 481s r-cran-viridis r-cran-rstudioapi r-cran-rmysql gridengine-client 481s slurm-client r-cran-lubridate r-cran-magick r-cran-sf r-cran-getopt 481s r-cran-interp r-cran-gam r-cran-formattable r-cran-nanotime 481s r-cran-palmerpenguins r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi 481s r-cran-rlecuyer r-cran-spelling r-cran-brio r-cran-callr r-cran-here 481s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 481s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 481s hintview texlive-latex-base-doc wp2latex 481s Recommended packages: 481s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 481s r-recommended r-doc-html r-cran-fastmatch r-cran-testthat r-cran-ranger 481s r-bioc-biocversion r-cran-remotes r-cran-downlit r-cran-rstudioapi 481s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot 481s r-cran-thematic r-cran-devtools r-cran-tinytest r-cran-callr r-cran-covr 481s r-cran-mockery r-cran-processx r-cran-ps r-cran-rprojroot r-cran-whoami 481s r-cran-bench r-cran-brio r-cran-decor r-cran-desc r-cran-lobstr 481s r-cran-spelling r-cran-webutils r-cran-r.utils r-cran-xts r-cran-nanotime 481s r-cran-zoo r-cran-broom r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql 481s r-cran-unitizer r-cran-rsvg r-cran-rhpcblasctl r-cran-r.rsp r-cran-markdown 481s r-cran-pkgload r-cran-hexbin r-cran-hmisc r-cran-mapproj r-cran-maps 481s r-cran-multcomp r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-rpart 481s r-cran-sf r-cran-svglite r-cran-vdiffr r-cran-waldo r-cran-cairo r-cran-jpeg 481s r-cran-readr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 481s r-cran-tikzdevice node-highlight.js r-cran-lintr r-cran-tidyverse 481s r-cran-r.devices r-cran-sodium r-cran-lubridate r-cran-ggthemes 481s r-cran-ggally r-cran-ggalluvial r-cran-dendextend r-cran-irdisplay 481s r-cran-forcats r-cran-palmerpenguins r-cran-rversions r-cran-usethis 481s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-gh r-cran-rvest 481s r-cran-plyr r-cran-dichromat r-cran-mockr r-cran-formattable r-cran-pkgdown 481s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 481s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 482s The following packages will be REMOVED: 482s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 482s The following NEW packages will be installed: 482s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 482s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 482s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 482s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 482s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 482s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 482s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu hdf5-helpers 482s icu-devtools javascript-common libaec-dev libaec0 libasan8 libatomic1 482s libbibtex-parser-perl libblas-dev libblas3 libblosc1 libboost-dev 483s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 483s libcrypt-dev libcurl4-openssl-dev libcurl4t64 libdatrie1 libdeflate0 483s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 483s libgraphite2-3 libharfbuzz0b libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev 483s libhdf5-fortran-102 libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 483s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 483s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 483s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 483s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 483s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 483s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 483s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 483s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 483s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 483s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 483s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 483s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 483s libreadline8t64 libsharpyuv0 libsm6 libsnappy1v5 libssl-dev libstdc++-13-dev 483s libsynctex2 libsz2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data libthai0 483s libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 483s libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 483s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev littler 483s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 483s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 483s r-bioc-annotate r-bioc-annotationdbi r-bioc-beachmat r-bioc-biobase 483s r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biocsingular r-bioc-biocstyle 483s r-bioc-biostrings r-bioc-delayedarray r-bioc-delayedmatrixstats r-bioc-edger 483s r-bioc-genefilter r-bioc-genomeinfodb r-bioc-genomeinfodbdata 483s r-bioc-genomicranges r-bioc-graph r-bioc-gseabase r-bioc-gsva 483s r-bioc-hdf5array r-bioc-iranges r-bioc-keggrest r-bioc-limma 483s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhdf5 r-bioc-rhdf5filters 483s r-bioc-rhdf5lib r-bioc-s4arrays r-bioc-s4vectors r-bioc-scaledmatrix 483s r-bioc-singlecellexperiment r-bioc-sparsearray r-bioc-sparsematrixstats 483s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 483s r-cran-askpass r-cran-backports r-cran-base64enc r-cran-base64url 483s r-cran-batchtools r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 483s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brew r-cran-bslib 483s r-cran-cachem r-cran-checkmate r-cran-cli r-cran-codetools r-cran-colorspace 483s r-cran-colourpicker r-cran-commonmark r-cran-cpp11 r-cran-crayon 483s r-cran-crosstalk r-cran-curl r-cran-data.table r-cran-dbi r-cran-digest 483s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 483s r-cran-fastmap r-cran-fontawesome r-cran-formatr r-cran-fs 483s r-cran-futile.logger r-cran-futile.options r-cran-future r-cran-future.apply 483s r-cran-future.batchtools r-cran-generics r-cran-ggplot2 r-cran-globals 483s r-cran-glue r-cran-gtable r-cran-highr r-cran-hms r-cran-htmltools 483s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-irlba r-cran-isoband 483s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 483s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lazyeval r-cran-lifecycle 483s r-cran-listenv r-cran-littler r-cran-locfit r-cran-magrittr r-cran-mass 483s r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime 483s r-cran-miniui r-cran-munsell r-cran-nlme r-cran-openssl r-cran-parallelly 483s r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plotly 483s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 483s r-cran-r6 r-cran-rappdirs r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl 483s r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-rsvd r-cran-runit 483s r-cran-sass r-cran-scales r-cran-shiny r-cran-shinydashboard r-cran-shinyjs 483s r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr 483s r-cran-survival r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 483s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-withr 483s r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto t1utils 483s tex-common texlive-base texlive-bibtex-extra texlive-binaries 483s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 483s The following packages will be upgraded: 483s curl 483s 1 upgraded, 339 newly installed, 5 to remove and 0 not upgraded. 483s Need to get 532 MB/532 MB of archives. 483s After this operation, 1844 MB of additional disk space will be used. 483s Get:1 /tmp/autopkgtest.dr8pZL/2-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [876 B] 483s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 483s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 483s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 483s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 484s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 484s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 484s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 484s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 484s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 484s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 484s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 484s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 484s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 484s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 485s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 485s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 486s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 486s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 486s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 486s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 486s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 486s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 486s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 486s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 487s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 487s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 487s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 487s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 487s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 487s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 489s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 489s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 489s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 489s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 489s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 491s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 491s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 491s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 491s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 491s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 491s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 491s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 491s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 491s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 491s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 491s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 491s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 491s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 492s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 492s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 492s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 492s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 493s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 493s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 493s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 493s Get:57 http://ftpmaster.internal/ubuntu noble/universe arm64 hdf5-helpers arm64 1.10.10+repack-3ubuntu1 [15.5 kB] 493s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 493s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 493s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec0 arm64 1.1.2-1 [21.7 kB] 493s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 493s Get:62 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 493s Get:63 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 493s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 493s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 493s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libsnappy1v5 arm64 1.1.10-1 [28.2 kB] 493s Get:67 http://ftpmaster.internal/ubuntu noble/universe arm64 libblosc1 arm64 1.21.5+ds-1 [25.5 kB] 493s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 495s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 495s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 495s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 495s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 495s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 495s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 495s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 495s Get:76 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4-openssl-dev arm64 8.5.0-2ubuntu7 [454 kB] 495s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 495s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 495s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 495s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 495s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libsz2 arm64 1.1.2-1 [5168 B] 495s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-103-1 arm64 1.10.10+repack-3ubuntu1 [1189 kB] 495s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-cpp-103-1 arm64 1.10.10+repack-3ubuntu1 [120 kB] 495s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-fortran-102 arm64 1.10.10+repack-3ubuntu1 [86.3 kB] 495s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-100 arm64 1.10.10+repack-3ubuntu1 [55.5 kB] 495s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-fortran-100 arm64 1.10.10+repack-3ubuntu1 [30.7 kB] 495s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-hl-cpp-100 arm64 1.10.10+repack-3ubuntu1 [10.7 kB] 495s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 495s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 495s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 495s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 495s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 495s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 495s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libaec-dev arm64 1.1.2-1 [18.8 kB] 495s Get:95 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl-dev arm64 3.0.13-0ubuntu1 [2335 kB] 495s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libhdf5-dev arm64 1.10.10+repack-3ubuntu1 [3036 kB] 496s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 496s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 496s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 497s Get:100 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 497s Get:101 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 497s Get:102 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 497s Get:103 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 498s Get:104 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 498s Get:105 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 498s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 498s Get:107 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 498s Get:108 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 498s Get:109 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 498s Get:110 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 498s Get:111 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 498s Get:112 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 498s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 498s Get:114 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 498s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 498s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 499s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 501s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 501s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 501s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 501s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 501s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 501s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 501s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 501s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 501s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 501s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 501s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 501s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 501s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 501s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 501s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 501s Get:133 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 501s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 501s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 502s Get:136 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 502s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 502s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 502s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 502s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 502s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 502s Get:142 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 502s Get:143 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 502s Get:144 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 502s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 502s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 502s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 502s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 502s Get:149 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 502s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 502s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 502s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 502s Get:153 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 502s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 502s Get:155 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 502s Get:156 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 502s Get:157 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 502s Get:158 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 509s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 509s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 509s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 509s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 509s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 509s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 509s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 515s Get:166 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 515s Get:167 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 515s Get:168 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 515s Get:169 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 515s Get:170 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 515s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 515s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 515s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 515s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 515s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 516s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 516s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 516s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 516s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 516s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 517s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 517s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 517s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 517s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 517s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 517s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 517s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 517s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 517s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 517s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 517s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 517s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 517s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 517s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 517s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 517s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 517s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 517s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 517s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 517s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 517s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 517s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 517s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 517s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 518s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 522s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 522s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 523s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 526s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 526s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 527s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 527s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 527s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 528s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 528s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 529s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 529s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 529s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 529s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 529s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 529s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 530s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 530s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 530s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-beachmat arm64 2.18.1+ds-1 [1561 kB] 531s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 531s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 531s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 531s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 531s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 531s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 531s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 531s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 531s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-scaledmatrix all 1.10.0+dfsg-1 [320 kB] 531s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-irlba arm64 2.3.5.1-2 [293 kB] 531s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsvd all 1.0.5-1 [3589 kB] 532s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocsingular arm64 1.18.0+ds-1 [350 kB] 532s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 532s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 532s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 532s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 532s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 532s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 532s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 532s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 532s Get:245 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 533s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 534s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 534s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 534s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 534s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 534s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 535s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 535s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 535s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 535s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 535s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 535s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 535s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 535s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 535s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 536s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 536s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 536s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 536s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 536s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 536s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 536s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 536s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 536s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 536s Get:270 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 536s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 537s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 539s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 539s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 546s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 546s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsematrixstats arm64 1.14.0+dfsg-1 [815 kB] 546s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedmatrixstats all 1.24.0+ds-1 [483 kB] 546s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 546s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 546s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 546s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 546s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 546s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genefilter arm64 1.84.0-1 [1122 kB] 546s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 547s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 547s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gseabase all 1.64.0+ds-1 [717 kB] 547s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 547s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-singlecellexperiment all 1.24.0+ds-1 [828 kB] 547s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5lib arm64 1.24.2+dfsg-1 [96.1 kB] 547s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5filters arm64 1.14.1+dfsg-3 [135 kB] 547s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhdf5 arm64 2.46.1+dfsg-1 [805 kB] 547s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-hdf5array arm64 1.30.1-1 [8757 kB] 548s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gsva arm64 1.50.0+ds-1 [1081 kB] 548s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 552s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 552s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64url arm64 1.4-2build1 [26.4 kB] 552s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brew all 1.0-10-1 [77.7 kB] 552s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 552s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 552s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 552s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 552s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 552s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-batchtools arm64 0.9.17+dfsg-1 [712 kB] 553s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 553s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 553s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 554s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 554s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 554s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 555s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 555s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 555s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 555s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 555s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 555s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 555s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 555s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 555s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 555s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 555s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 556s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 556s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-miniui all 0.1.1.1-3build1 [36.1 kB] 556s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shinyjs all 2.1.0-1 [967 kB] 556s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colourpicker all 1.3.0+dfsg-1 [1191 kB] 556s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 556s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crosstalk all 1.2.1+dfsg-1 [177 kB] 556s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 556s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 556s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 556s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-globals all 0.16.2-1 [117 kB] 556s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-listenv all 0.9.1+dfsg-1 [112 kB] 556s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-parallelly arm64 1.37.1-1 [364 kB] 556s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future all 1.33.1+dfsg-1 [634 kB] 556s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.apply all 1.11.1+dfsg-1 [171 kB] 556s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-future.batchtools all 0.12.1+dfsg-1 [185 kB] 556s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 556s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 556s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plotly all 4.10.4+dfsg-2 [3666 kB] 556s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 556s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shinydashboard all 0.7.2-1 [269 kB] 559s Preconfiguring packages ... 560s Fetched 532 MB in 1min 14s (7233 kB/s) 560s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 560s wget depends on libpsl5 (>= 0.16.0). 560s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 560s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 560s 560s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75866 files and directories currently installed.) 560s Removing libpsl5:arm64 (0.21.2-1build1) ... 560s Selecting previously unselected package libpsl5t64:arm64. 560s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75861 files and directories currently installed.) 560s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 560s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 560s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 560s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75867 files and directories currently installed.) 561s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 561s Selecting previously unselected package libcurl4t64:arm64. 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75862 files and directories currently installed.) 561s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 561s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 561s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 561s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 561s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 561s 561s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75868 files and directories currently installed.) 561s Removing libpng16-16:arm64 (1.6.43-1) ... 561s Selecting previously unselected package libpng16-16t64:arm64. 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75858 files and directories currently installed.) 562s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 562s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 562s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 562s parted depends on libreadline8 (>= 6.0). 562s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 562s libpython3.11-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 562s gpgsm depends on libreadline8 (>= 6.0). 562s gpgconf depends on libreadline8 (>= 6.0). 562s gpg depends on libreadline8 (>= 6.0). 562s gawk depends on libreadline8 (>= 6.0). 562s fdisk depends on libreadline8 (>= 6.0). 562s 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75869 files and directories currently installed.) 562s Removing libreadline8:arm64 (8.2-3) ... 562s Selecting previously unselected package libreadline8t64:arm64. 562s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75857 files and directories currently installed.) 562s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 562s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 562s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 562s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 563s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 563s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 563s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 563s lsof depends on libtirpc3 (>= 1.0.2). 563s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 563s libpython3.11-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 563s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 563s iproute2 depends on libtirpc3 (>= 1.0.2). 563s 563s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75877 files and directories currently installed.) 563s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 563s Selecting previously unselected package libtirpc3t64:arm64. 563s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 75871 files and directories currently installed.) 563s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 563s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 563s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 563s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 563s Selecting previously unselected package libc-dev-bin. 564s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 564s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 564s Selecting previously unselected package linux-libc-dev:arm64. 564s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 564s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 565s Selecting previously unselected package libcrypt-dev:arm64. 565s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 565s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 565s Selecting previously unselected package libtirpc-dev:arm64. 565s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 565s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 565s Selecting previously unselected package libnsl-dev:arm64. 565s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 565s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 565s Selecting previously unselected package rpcsvc-proto. 565s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 565s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 565s Selecting previously unselected package libc6-dev:arm64. 565s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 565s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 566s Selecting previously unselected package libisl23:arm64. 566s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 566s Unpacking libisl23:arm64 (0.26-3) ... 566s Selecting previously unselected package libmpc3:arm64. 566s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 566s Unpacking libmpc3:arm64 (1.3.1-1) ... 566s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 566s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 566s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 567s Selecting previously unselected package cpp-13. 567s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 567s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 567s Selecting previously unselected package cpp-aarch64-linux-gnu. 567s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 567s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 567s Selecting previously unselected package cpp. 567s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 567s Unpacking cpp (4:13.2.0-7ubuntu1) ... 567s Selecting previously unselected package libcc1-0:arm64. 567s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 567s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 567s Selecting previously unselected package libgomp1:arm64. 567s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 567s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 567s Selecting previously unselected package libitm1:arm64. 567s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 567s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libatomic1:arm64. 568s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libasan8:arm64. 568s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package liblsan0:arm64. 568s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 568s Selecting previously unselected package libtsan2:arm64. 568s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 568s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package libubsan1:arm64. 569s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 569s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package libhwasan0:arm64. 569s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 569s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 569s Selecting previously unselected package libgcc-13-dev:arm64. 569s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 569s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 569s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 569s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 569s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 571s Selecting previously unselected package gcc-13. 571s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 571s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 572s Selecting previously unselected package gcc-aarch64-linux-gnu. 572s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 572s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 572s Selecting previously unselected package gcc. 572s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 572s Unpacking gcc (4:13.2.0-7ubuntu1) ... 572s Selecting previously unselected package libstdc++-13-dev:arm64. 572s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 572s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 573s Selecting previously unselected package g++-13-aarch64-linux-gnu. 573s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 573s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 574s Selecting previously unselected package g++-13. 574s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 574s Unpacking g++-13 (13.2.0-17ubuntu2) ... 574s Selecting previously unselected package g++-aarch64-linux-gnu. 574s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 574s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 574s Selecting previously unselected package g++. 574s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 574s Unpacking g++ (4:13.2.0-7ubuntu1) ... 575s Selecting previously unselected package build-essential. 575s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 575s Unpacking build-essential (12.10ubuntu1) ... 575s Selecting previously unselected package dctrl-tools. 575s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 575s Unpacking dctrl-tools (2.24-3build2) ... 575s Selecting previously unselected package fonts-dejavu-mono. 575s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 575s Unpacking fonts-dejavu-mono (2.37-8) ... 575s Selecting previously unselected package fonts-dejavu-core. 575s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 576s Unpacking fonts-dejavu-core (2.37-8) ... 576s Selecting previously unselected package fontconfig-config. 576s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 576s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 576s Selecting previously unselected package libfontconfig1:arm64. 576s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 576s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 576s Selecting previously unselected package fontconfig. 576s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 576s Unpacking fontconfig (2.15.0-1ubuntu1) ... 577s Selecting previously unselected package fonts-font-awesome. 577s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 577s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 577s Selecting previously unselected package fonts-glyphicons-halflings. 577s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 577s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 577s Selecting previously unselected package fonts-lmodern. 577s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 577s Unpacking fonts-lmodern (2.005-1) ... 578s Selecting previously unselected package fonts-mathjax. 578s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 578s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 578s Selecting previously unselected package libgfortran5:arm64. 578s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 578s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 578s Selecting previously unselected package libgfortran-13-dev:arm64. 578s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 578s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 578s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 578s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 578s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 580s Selecting previously unselected package gfortran-13. 580s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 580s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 580s Selecting previously unselected package gfortran-aarch64-linux-gnu. 580s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 580s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 580s Selecting previously unselected package gfortran. 580s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 580s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 580s Selecting previously unselected package hdf5-helpers. 580s Preparing to unpack .../050-hdf5-helpers_1.10.10+repack-3ubuntu1_arm64.deb ... 580s Unpacking hdf5-helpers (1.10.10+repack-3ubuntu1) ... 580s Selecting previously unselected package icu-devtools. 580s Preparing to unpack .../051-icu-devtools_74.2-1ubuntu1_arm64.deb ... 580s Unpacking icu-devtools (74.2-1ubuntu1) ... 580s Selecting previously unselected package javascript-common. 580s Preparing to unpack .../052-javascript-common_11+nmu1_all.deb ... 580s Unpacking javascript-common (11+nmu1) ... 581s Selecting previously unselected package libaec0:arm64. 581s Preparing to unpack .../053-libaec0_1.1.2-1_arm64.deb ... 581s Unpacking libaec0:arm64 (1.1.2-1) ... 581s Selecting previously unselected package libio-string-perl. 581s Preparing to unpack .../054-libio-string-perl_1.08-4_all.deb ... 581s Unpacking libio-string-perl (1.08-4) ... 581s Selecting previously unselected package liblatex-tounicode-perl. 581s Preparing to unpack .../055-liblatex-tounicode-perl_0.54-2_all.deb ... 581s Unpacking liblatex-tounicode-perl (0.54-2) ... 581s Selecting previously unselected package libbibtex-parser-perl. 581s Preparing to unpack .../056-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 581s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 581s Selecting previously unselected package libblas3:arm64. 581s Preparing to unpack .../057-libblas3_3.12.0-3_arm64.deb ... 581s Unpacking libblas3:arm64 (3.12.0-3) ... 581s Selecting previously unselected package libblas-dev:arm64. 581s Preparing to unpack .../058-libblas-dev_3.12.0-3_arm64.deb ... 581s Unpacking libblas-dev:arm64 (3.12.0-3) ... 581s Selecting previously unselected package libsnappy1v5:arm64. 581s Preparing to unpack .../059-libsnappy1v5_1.1.10-1_arm64.deb ... 581s Unpacking libsnappy1v5:arm64 (1.1.10-1) ... 581s Selecting previously unselected package libblosc1:arm64. 581s Preparing to unpack .../060-libblosc1_1.21.5+ds-1_arm64.deb ... 581s Unpacking libblosc1:arm64 (1.21.5+ds-1) ... 582s Selecting previously unselected package libboost1.83-dev:arm64. 582s Preparing to unpack .../061-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 582s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 596s Selecting previously unselected package libboost-dev:arm64. 596s Preparing to unpack .../062-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 596s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 596s Selecting previously unselected package libbz2-dev:arm64. 596s Preparing to unpack .../063-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 597s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 597s Selecting previously unselected package libpixman-1-0:arm64. 597s Preparing to unpack .../064-libpixman-1-0_0.42.2-1_arm64.deb ... 597s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 597s Selecting previously unselected package libxcb-render0:arm64. 597s Preparing to unpack .../065-libxcb-render0_1.15-1_arm64.deb ... 597s Unpacking libxcb-render0:arm64 (1.15-1) ... 597s Selecting previously unselected package libxcb-shm0:arm64. 597s Preparing to unpack .../066-libxcb-shm0_1.15-1_arm64.deb ... 597s Unpacking libxcb-shm0:arm64 (1.15-1) ... 597s Selecting previously unselected package libxrender1:arm64. 597s Preparing to unpack .../067-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 597s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 597s Selecting previously unselected package libcairo2:arm64. 597s Preparing to unpack .../068-libcairo2_1.18.0-1_arm64.deb ... 597s Unpacking libcairo2:arm64 (1.18.0-1) ... 597s Selecting previously unselected package libcurl4-openssl-dev:arm64. 597s Preparing to unpack .../069-libcurl4-openssl-dev_8.5.0-2ubuntu7_arm64.deb ... 597s Unpacking libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 597s Selecting previously unselected package libdatrie1:arm64. 597s Preparing to unpack .../070-libdatrie1_0.2.13-3_arm64.deb ... 597s Unpacking libdatrie1:arm64 (0.2.13-3) ... 598s Selecting previously unselected package libdeflate0:arm64. 598s Preparing to unpack .../071-libdeflate0_1.19-1_arm64.deb ... 598s Unpacking libdeflate0:arm64 (1.19-1) ... 598s Selecting previously unselected package libgraphite2-3:arm64. 598s Preparing to unpack .../072-libgraphite2-3_1.3.14-2_arm64.deb ... 598s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 598s Selecting previously unselected package libharfbuzz0b:arm64. 598s Preparing to unpack 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599s Preparing to unpack .../078-libhdf5-hl-100_1.10.10+repack-3ubuntu1_arm64.deb ... 599s Unpacking libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 599s Selecting previously unselected package libhdf5-hl-fortran-100:arm64. 599s Preparing to unpack .../079-libhdf5-hl-fortran-100_1.10.10+repack-3ubuntu1_arm64.deb ... 599s Unpacking libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 599s Selecting previously unselected package libhdf5-hl-cpp-100:arm64. 599s Preparing to unpack .../080-libhdf5-hl-cpp-100_1.10.10+repack-3ubuntu1_arm64.deb ... 599s Unpacking libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 599s Selecting previously unselected package zlib1g-dev:arm64. 599s Preparing to unpack .../081-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 599s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 599s Selecting previously unselected package libjpeg-turbo8:arm64. 599s Preparing to unpack .../082-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 599s Unpacking 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Selecting previously unselected package libssl-dev:arm64. 600s Preparing to unpack .../088-libssl-dev_3.0.13-0ubuntu1_arm64.deb ... 600s Unpacking libssl-dev:arm64 (3.0.13-0ubuntu1) ... 600s Selecting previously unselected package libhdf5-dev. 600s Preparing to unpack .../089-libhdf5-dev_1.10.10+repack-3ubuntu1_arm64.deb ... 600s Unpacking libhdf5-dev (1.10.10+repack-3ubuntu1) ... 601s Selecting previously unselected package x11-common. 601s Preparing to unpack .../090-x11-common_1%3a7.7+23ubuntu2_all.deb ... 601s Unpacking x11-common (1:7.7+23ubuntu2) ... 601s Selecting previously unselected package libice6:arm64. 601s Preparing to unpack .../091-libice6_2%3a1.0.10-1build2_arm64.deb ... 601s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 601s Selecting previously unselected package libicu-dev:arm64. 601s Preparing to unpack .../092-libicu-dev_74.2-1ubuntu1_arm64.deb ... 601s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 603s Selecting previously unselected package libjs-bootstrap. 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(2023.20230311.66589-9) ... 606s Selecting previously unselected package liblapack3:arm64. 606s Preparing to unpack .../109-liblapack3_3.12.0-3_arm64.deb ... 606s Unpacking liblapack3:arm64 (3.12.0-3) ... 606s Selecting previously unselected package liblapack-dev:arm64. 606s Preparing to unpack .../110-liblapack-dev_3.12.0-3_arm64.deb ... 606s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 607s Selecting previously unselected package liblerc4:arm64. 607s Preparing to unpack .../111-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 607s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 607s Selecting previously unselected package liblua5.4-0:arm64. 607s Preparing to unpack .../112-liblua5.4-0_5.4.6-3_arm64.deb ... 607s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 607s Selecting previously unselected package libncurses-dev:arm64. 607s Preparing to unpack .../113-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 607s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 608s Selecting previously unselected package libthai-data. 608s Preparing to unpack .../114-libthai-data_0.1.29-2_all.deb ... 608s Unpacking libthai-data (0.1.29-2) ... 608s Selecting previously unselected package libthai0:arm64. 608s Preparing to unpack .../115-libthai0_0.1.29-2_arm64.deb ... 608s Unpacking libthai0:arm64 (0.1.29-2) ... 608s Selecting previously unselected package libpango-1.0-0:arm64. 608s Preparing to unpack .../116-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 608s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 608s Selecting previously unselected package libpangoft2-1.0-0:arm64. 608s Preparing to unpack .../117-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 608s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 608s Selecting previously unselected package libpangocairo-1.0-0:arm64. 608s Preparing to unpack .../118-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 608s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 608s Selecting previously unselected package libpaper1:arm64. 608s Preparing 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libreadline-dev:arm64 (8.2-3.1) ... 610s Selecting previously unselected package libsharpyuv0:arm64. 610s Preparing to unpack .../130-libsharpyuv0_1.3.2-0.4_arm64.deb ... 610s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 610s Selecting previously unselected package libsm6:arm64. 610s Preparing to unpack .../131-libsm6_2%3a1.2.3-1build2_arm64.deb ... 610s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 610s Selecting previously unselected package libsynctex2:arm64. 610s Preparing to unpack .../132-libsynctex2_2023.20230311.66589-9_arm64.deb ... 610s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 610s Selecting previously unselected package libtcl8.6:arm64. 610s Preparing to unpack .../133-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 610s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 611s Selecting previously unselected package libteckit0:arm64. 611s Preparing to unpack .../134-libteckit0_2.5.12+ds1-1_arm64.deb ... 611s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 611s Selecting previously unselected package libtexlua53-5:arm64. 611s Preparing to unpack .../135-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 611s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 611s Selecting previously unselected package libjbig0:arm64. 611s Preparing to unpack .../136-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 611s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 611s Selecting previously unselected package libwebp7:arm64. 611s Preparing to unpack .../137-libwebp7_1.3.2-0.4_arm64.deb ... 611s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 611s Selecting previously unselected package libtiff6:arm64. 611s Preparing to unpack .../138-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 611s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 611s Selecting previously unselected package libxft2:arm64. 611s Preparing to unpack .../139-libxft2_2.3.6-1_arm64.deb ... 611s Unpacking libxft2:arm64 (2.3.6-1) ... 611s Selecting previously unselected package libxss1:arm64. 611s Preparing to unpack .../140-libxss1_1%3a1.2.3-1build2_arm64.deb ... 611s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 612s Selecting previously unselected package libtk8.6:arm64. 612s Preparing to unpack .../141-libtk8.6_8.6.13-2_arm64.deb ... 612s Unpacking libtk8.6:arm64 (8.6.13-2) ... 612s Selecting previously unselected package libxt6t64:arm64. 612s Preparing to unpack .../142-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 612s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 612s Selecting previously unselected package libxmu6:arm64. 612s Preparing to unpack .../143-libxmu6_2%3a1.1.3-3_arm64.deb ... 612s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 612s Selecting previously unselected package libxpm4:arm64. 612s Preparing to unpack .../144-libxpm4_1%3a3.5.17-1_arm64.deb ... 612s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 612s Selecting previously unselected package libxaw7:arm64. 612s Preparing to unpack .../145-libxaw7_2%3a1.0.14-1_arm64.deb ... 612s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 612s Selecting previously unselected package libxi6:arm64. 612s Preparing to unpack .../146-libxi6_2%3a1.8.1-1_arm64.deb ... 612s Unpacking libxi6:arm64 (2:1.8.1-1) ... 612s Selecting previously unselected package libzzip-0-13:arm64. 612s Preparing to unpack .../147-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 612s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 613s Selecting previously unselected package zip. 613s Preparing to unpack .../148-zip_3.0-13_arm64.deb ... 613s Unpacking zip (3.0-13) ... 613s Selecting previously unselected package unzip. 613s Preparing to unpack .../149-unzip_6.0-28ubuntu3_arm64.deb ... 613s Unpacking unzip (6.0-28ubuntu3) ... 613s Selecting previously unselected package xdg-utils. 613s Preparing to unpack .../150-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 613s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 613s Selecting previously unselected package r-base-core. 613s Preparing to unpack .../151-r-base-core_4.3.3-2build1_arm64.deb ... 613s Unpacking r-base-core (4.3.3-2build1) ... 615s Selecting previously unselected package r-cran-littler. 615s Preparing to unpack .../152-r-cran-littler_0.3.19-1_arm64.deb ... 615s Unpacking r-cran-littler (0.3.19-1) ... 615s Selecting previously unselected package littler. 615s Preparing to unpack .../153-littler_0.3.19-1_all.deb ... 615s Unpacking littler (0.3.19-1) ... 615s Selecting previously unselected package node-bootstrap-sass. 615s Preparing to unpack .../154-node-bootstrap-sass_3.4.3-2_all.deb ... 615s Unpacking node-bootstrap-sass (3.4.3-2) ... 616s Selecting previously unselected package node-html5shiv. 616s Preparing to unpack .../155-node-html5shiv_3.7.3+dfsg-5_all.deb ... 616s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 616s Selecting previously unselected package node-normalize.css. 616s Preparing to unpack .../156-node-normalize.css_8.0.1-5_all.deb ... 616s Unpacking node-normalize.css (8.0.1-5) ... 616s Selecting previously unselected package pandoc-data. 616s Preparing to unpack .../157-pandoc-data_3.1.3-1_all.deb ... 616s Unpacking pandoc-data (3.1.3-1) ... 616s Selecting previously unselected package pandoc. 616s Preparing to unpack .../158-pandoc_3.1.3+ds-2_arm64.deb ... 616s Unpacking pandoc (3.1.3+ds-2) ... 620s Selecting previously unselected package pkgconf-bin. 620s Preparing to unpack .../159-pkgconf-bin_1.8.1-2_arm64.deb ... 620s Unpacking pkgconf-bin (1.8.1-2) ... 621s Selecting previously unselected package pkgconf:arm64. 621s Preparing to unpack .../160-pkgconf_1.8.1-2_arm64.deb ... 621s Unpacking pkgconf:arm64 (1.8.1-2) ... 621s Selecting previously unselected package pkg-config:arm64. 621s Preparing to unpack .../161-pkg-config_1.8.1-2_arm64.deb ... 621s Unpacking pkg-config:arm64 (1.8.1-2) ... 621s Selecting previously unselected package liblzma-dev:arm64. 621s Preparing to unpack .../162-liblzma-dev_5.4.5-0.3_arm64.deb ... 621s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 621s Selecting previously unselected package r-base-dev. 621s Preparing to unpack .../163-r-base-dev_4.3.3-2build1_all.deb ... 621s Unpacking r-base-dev (4.3.3-2build1) ... 621s Selecting previously unselected package pkg-r-autopkgtest. 621s Preparing to unpack .../164-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 621s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 621s Selecting previously unselected package r-bioc-biocgenerics. 621s Preparing to unpack .../165-r-bioc-biocgenerics_0.48.1-2_all.deb ... 621s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 621s Selecting previously unselected package r-bioc-biobase. 621s Preparing to unpack .../166-r-bioc-biobase_2.62.0-1_arm64.deb ... 621s Unpacking r-bioc-biobase (2.62.0-1) ... 622s Selecting previously unselected package r-bioc-s4vectors. 622s Preparing to unpack .../167-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 622s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 622s Selecting previously unselected package r-bioc-iranges. 622s Preparing to unpack .../168-r-bioc-iranges_2.36.0-1_arm64.deb ... 622s Unpacking r-bioc-iranges (2.36.0-1) ... 622s Selecting previously unselected package r-cran-dbi. 622s Preparing to unpack .../169-r-cran-dbi_1.2.2-1_all.deb ... 622s Unpacking r-cran-dbi (1.2.2-1) ... 623s Selecting previously unselected package r-cran-bit. 623s Preparing to unpack .../170-r-cran-bit_4.0.5-1_arm64.deb ... 623s Unpacking r-cran-bit (4.0.5-1) ... 623s Selecting previously unselected package r-cran-bit64. 623s Preparing to unpack .../171-r-cran-bit64_4.0.5-1_arm64.deb ... 623s Unpacking r-cran-bit64 (4.0.5-1) ... 623s Selecting previously unselected package r-cran-rlang. 623s Preparing to unpack .../172-r-cran-rlang_1.1.3-1_arm64.deb ... 623s Unpacking r-cran-rlang (1.1.3-1) ... 623s Selecting previously unselected package r-cran-cli. 623s Preparing to unpack .../173-r-cran-cli_3.6.2-1_arm64.deb ... 623s Unpacking r-cran-cli (3.6.2-1) ... 624s Selecting previously unselected package r-cran-glue. 624s Preparing to unpack .../174-r-cran-glue_1.7.0-1_arm64.deb ... 624s Unpacking r-cran-glue (1.7.0-1) ... 624s Selecting previously unselected package r-cran-lifecycle. 624s Preparing to unpack .../175-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 624s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 624s Selecting previously unselected package r-cran-vctrs. 624s Preparing to unpack .../176-r-cran-vctrs_0.6.5-1_arm64.deb ... 624s Unpacking r-cran-vctrs (0.6.5-1) ... 624s Selecting previously unselected package r-cran-blob. 624s Preparing to unpack .../177-r-cran-blob_1.2.4-1_all.deb ... 624s Unpacking r-cran-blob (1.2.4-1) ... 624s Selecting previously unselected package r-cran-fastmap. 624s Preparing to unpack .../178-r-cran-fastmap_1.1.1-1_arm64.deb ... 624s Unpacking r-cran-fastmap (1.1.1-1) ... 625s Selecting previously unselected package r-cran-cachem. 625s Preparing to unpack .../179-r-cran-cachem_1.0.8-1_arm64.deb ... 625s Unpacking r-cran-cachem (1.0.8-1) ... 625s Selecting previously unselected package r-cran-memoise. 625s Preparing to unpack .../180-r-cran-memoise_2.0.1-1_all.deb ... 625s Unpacking r-cran-memoise (2.0.1-1) ... 625s Selecting previously unselected package r-cran-pkgconfig. 625s Preparing to unpack .../181-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 625s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 625s Selecting previously unselected package r-cran-plogr. 625s Preparing to unpack .../182-r-cran-plogr_0.2.0-3build1_all.deb ... 625s Unpacking r-cran-plogr (0.2.0-3build1) ... 625s Selecting previously unselected package r-cran-cpp11. 625s Preparing to unpack .../183-r-cran-cpp11_0.4.7-1_all.deb ... 625s Unpacking r-cran-cpp11 (0.4.7-1) ... 625s Selecting previously unselected package r-cran-rsqlite. 625s Preparing to unpack .../184-r-cran-rsqlite_2.3.4-1_arm64.deb ... 625s Unpacking r-cran-rsqlite (2.3.4-1) ... 626s Selecting previously unselected package r-cran-curl. 626s Preparing to unpack .../185-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 626s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 626s Selecting previously unselected package r-cran-jsonlite. 626s Preparing to unpack .../186-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 626s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 626s Selecting previously unselected package r-cran-mime. 626s Preparing to unpack .../187-r-cran-mime_0.12-1_arm64.deb ... 626s Unpacking r-cran-mime (0.12-1) ... 626s Selecting previously unselected package r-cran-sys. 626s Preparing to unpack .../188-r-cran-sys_3.4.2-1_arm64.deb ... 626s Unpacking r-cran-sys (3.4.2-1) ... 626s Selecting previously unselected package r-cran-askpass. 626s Preparing to unpack .../189-r-cran-askpass_1.2.0-1_arm64.deb ... 626s Unpacking r-cran-askpass (1.2.0-1) ... 626s Selecting previously unselected package r-cran-openssl. 626s Preparing to unpack .../190-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 626s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 627s Selecting previously unselected package r-cran-r6. 627s Preparing to unpack .../191-r-cran-r6_2.5.1-1_all.deb ... 627s Unpacking r-cran-r6 (2.5.1-1) ... 627s Selecting previously unselected package r-cran-httr. 627s Preparing to unpack .../192-r-cran-httr_1.4.7+dfsg-1_all.deb ... 627s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 627s Selecting previously unselected package r-cran-png. 627s Preparing to unpack .../193-r-cran-png_0.1-8-1_arm64.deb ... 627s Unpacking r-cran-png (0.1-8-1) ... 627s Selecting previously unselected package r-bioc-zlibbioc. 627s Preparing to unpack .../194-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 627s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 627s Selecting previously unselected package r-bioc-xvector. 627s Preparing to unpack .../195-r-bioc-xvector_0.42.0-1_arm64.deb ... 627s Unpacking r-bioc-xvector (0.42.0-1) ... 627s Selecting previously unselected package r-cran-bitops. 627s Preparing to unpack .../196-r-cran-bitops_1.0-7-1_arm64.deb ... 627s Unpacking r-cran-bitops (1.0-7-1) ... 628s Selecting previously unselected package r-cran-rcurl. 628s Preparing to unpack .../197-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 628s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 628s Selecting previously unselected package r-bioc-genomeinfodbdata. 628s Preparing to unpack .../198-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 628s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 628s Selecting previously unselected package r-bioc-genomeinfodb. 628s Preparing to unpack .../199-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 628s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 629s Selecting previously unselected package r-cran-crayon. 629s Preparing to unpack .../200-r-cran-crayon_1.5.2-1_all.deb ... 629s Unpacking r-cran-crayon (1.5.2-1) ... 629s Selecting previously unselected package r-bioc-biostrings. 629s Preparing to unpack .../201-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 629s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 629s Selecting previously unselected package r-bioc-keggrest. 629s Preparing to unpack .../202-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 629s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 629s Selecting previously unselected package r-bioc-annotationdbi. 630s Preparing to unpack .../203-r-bioc-annotationdbi_1.64.1-1_all.deb ... 630s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 630s Selecting previously unselected package r-cran-xml. 630s Preparing to unpack .../204-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 630s Unpacking r-cran-xml (3.99-0.16.1-1) ... 630s Selecting previously unselected package r-cran-xtable. 630s Preparing to unpack .../205-r-cran-xtable_1%3a1.8-4-2_all.deb ... 630s Unpacking r-cran-xtable (1:1.8-4-2) ... 630s Selecting previously unselected package r-bioc-annotate. 630s Preparing to unpack .../206-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 630s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 631s Selecting previously unselected package r-cran-lattice. 631s Preparing to unpack .../207-r-cran-lattice_0.22-5-1_arm64.deb ... 631s Unpacking r-cran-lattice (0.22-5-1) ... 631s Selecting previously unselected package r-cran-matrix. 631s Preparing to unpack .../208-r-cran-matrix_1.6-5-1_arm64.deb ... 631s Unpacking r-cran-matrix (1.6-5-1) ... 631s Selecting previously unselected package r-cran-matrixstats. 631s Preparing to unpack .../209-r-cran-matrixstats_1.2.0-1_arm64.deb ... 631s Unpacking r-cran-matrixstats (1.2.0-1) ... 631s Selecting previously unselected package r-bioc-matrixgenerics. 632s Preparing to unpack .../210-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 632s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 632s Selecting previously unselected package r-cran-abind. 632s Preparing to unpack .../211-r-cran-abind_1.4-5-2_all.deb ... 632s Unpacking r-cran-abind (1.4-5-2) ... 632s Selecting previously unselected package r-bioc-s4arrays. 632s Preparing to unpack .../212-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 632s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 632s Selecting previously unselected package r-bioc-sparsearray. 632s Preparing to unpack .../213-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 632s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 632s Selecting previously unselected package r-bioc-delayedarray. 632s Preparing to unpack .../214-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 632s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 632s Selecting previously unselected package r-cran-pkgkitten. 633s Preparing to unpack .../215-r-cran-pkgkitten_0.2.3-1_all.deb ... 633s Unpacking r-cran-pkgkitten (0.2.3-1) ... 633s Selecting previously unselected package r-cran-rcpp. 633s Preparing to unpack .../216-r-cran-rcpp_1.0.12-1_arm64.deb ... 633s Unpacking r-cran-rcpp (1.0.12-1) ... 633s Selecting previously unselected package r-bioc-beachmat. 634s Preparing to unpack .../217-r-bioc-beachmat_2.18.1+ds-1_arm64.deb ... 634s Unpacking r-bioc-beachmat (2.18.1+ds-1) ... 634s Selecting previously unselected package r-cran-formatr. 634s Preparing to unpack .../218-r-cran-formatr_1.14-1_all.deb ... 634s Unpacking r-cran-formatr (1.14-1) ... 634s Selecting previously unselected package r-cran-lambda.r. 634s Preparing to unpack .../219-r-cran-lambda.r_1.2.4-2build1_all.deb ... 634s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 635s Selecting previously unselected package r-cran-futile.options. 635s Preparing to unpack .../220-r-cran-futile.options_1.0.1-3build1_all.deb ... 635s Unpacking r-cran-futile.options (1.0.1-3build1) ... 635s Selecting previously unselected package r-cran-futile.logger. 635s Preparing to unpack .../221-r-cran-futile.logger_1.4.3-4build1_all.deb ... 635s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 635s Selecting previously unselected package r-cran-snow. 635s Preparing to unpack .../222-r-cran-snow_1%3a0.4.4-2_all.deb ... 635s Unpacking r-cran-snow (1:0.4.4-2) ... 635s Selecting previously unselected package r-cran-codetools. 635s Preparing to unpack .../223-r-cran-codetools_0.2-19-1_all.deb ... 635s Unpacking r-cran-codetools (0.2-19-1) ... 635s Selecting previously unselected package r-cran-bh. 635s Preparing to unpack .../224-r-cran-bh_1.84.0-1_all.deb ... 635s Unpacking r-cran-bh (1.84.0-1) ... 635s Selecting previously unselected package r-bioc-biocparallel. 635s Preparing to unpack .../225-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 635s Unpacking r-bioc-biocparallel (1.36.0-1) ... 636s Selecting previously unselected package r-bioc-scaledmatrix. 636s Preparing to unpack .../226-r-bioc-scaledmatrix_1.10.0+dfsg-1_all.deb ... 636s Unpacking r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 636s Selecting previously unselected package r-cran-irlba. 636s Preparing to unpack .../227-r-cran-irlba_2.3.5.1-2_arm64.deb ... 636s Unpacking r-cran-irlba (2.3.5.1-2) ... 636s Selecting previously unselected package r-cran-rsvd. 636s Preparing to unpack .../228-r-cran-rsvd_1.0.5-1_all.deb ... 636s Unpacking r-cran-rsvd (1.0.5-1) ... 636s Selecting previously unselected package r-bioc-biocsingular. 636s Preparing to unpack .../229-r-bioc-biocsingular_1.18.0+ds-1_arm64.deb ... 636s Unpacking r-bioc-biocsingular (1.18.0+ds-1) ... 637s Selecting previously unselected package r-cran-base64enc. 637s Preparing to unpack .../230-r-cran-base64enc_0.1-3-3_arm64.deb ... 637s Unpacking r-cran-base64enc (0.1-3-3) ... 637s Selecting previously unselected package r-cran-digest. 637s Preparing to unpack .../231-r-cran-digest_0.6.34-1_arm64.deb ... 637s Unpacking r-cran-digest (0.6.34-1) ... 637s Selecting previously unselected package r-cran-ellipsis. 637s Preparing to unpack .../232-r-cran-ellipsis_0.3.2-2_arm64.deb ... 637s Unpacking r-cran-ellipsis (0.3.2-2) ... 637s Selecting previously unselected package r-cran-htmltools. 637s Preparing to unpack .../233-r-cran-htmltools_0.5.7-1_arm64.deb ... 637s Unpacking r-cran-htmltools (0.5.7-1) ... 637s Selecting previously unselected package r-cran-evaluate. 637s Preparing to unpack .../234-r-cran-evaluate_0.23-1_all.deb ... 637s Unpacking r-cran-evaluate (0.23-1) ... 637s Selecting previously unselected package r-cran-xfun. 638s Preparing to unpack .../235-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 638s Unpacking r-cran-xfun (0.41+dfsg-1) ... 638s Selecting previously unselected package r-cran-highr. 638s Preparing to unpack .../236-r-cran-highr_0.10+dfsg-1_all.deb ... 638s Unpacking r-cran-highr (0.10+dfsg-1) ... 638s Selecting previously unselected package r-cran-yaml. 638s Preparing to unpack .../237-r-cran-yaml_2.3.8-1_arm64.deb ... 638s Unpacking r-cran-yaml (2.3.8-1) ... 638s Selecting previously unselected package libjs-mathjax. 638s Preparing to unpack .../238-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 638s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 645s Selecting previously unselected package r-cran-knitr. 645s Preparing to unpack .../239-r-cran-knitr_1.45+dfsg-1_all.deb ... 645s Unpacking r-cran-knitr (1.45+dfsg-1) ... 645s Selecting previously unselected package r-cran-jquerylib. 646s Preparing to unpack .../240-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 646s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 646s Selecting previously unselected package r-cran-fs. 646s Preparing to unpack .../241-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 646s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 646s Selecting previously unselected package r-cran-rappdirs. 646s Preparing to unpack .../242-r-cran-rappdirs_0.3.3-1_arm64.deb ... 646s Unpacking r-cran-rappdirs (0.3.3-1) ... 646s Selecting previously unselected package r-cran-sass. 646s Preparing to unpack .../243-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 646s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 646s Selecting previously unselected package r-cran-bslib. 646s Preparing to unpack .../244-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 646s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 647s Selecting previously unselected package r-cran-fontawesome. 647s Preparing to unpack .../245-r-cran-fontawesome_0.5.2-1_all.deb ... 647s Unpacking r-cran-fontawesome (0.5.2-1) ... 647s Selecting previously unselected package r-cran-magrittr. 647s Preparing to unpack .../246-r-cran-magrittr_2.0.3-1_arm64.deb ... 647s Unpacking r-cran-magrittr (2.0.3-1) ... 648s Selecting previously unselected package r-cran-stringi. 648s Preparing to unpack .../247-r-cran-stringi_1.8.3-1_arm64.deb ... 648s Unpacking r-cran-stringi (1.8.3-1) ... 648s Selecting previously unselected package r-cran-stringr. 648s Preparing to unpack .../248-r-cran-stringr_1.5.1-1_all.deb ... 648s Unpacking r-cran-stringr (1.5.1-1) ... 648s Selecting previously unselected package r-cran-tinytex. 648s Preparing to unpack .../249-r-cran-tinytex_0.49-1_all.deb ... 648s Unpacking r-cran-tinytex (0.49-1) ... 648s Selecting previously unselected package libjs-modernizr. 648s Preparing to unpack .../250-libjs-modernizr_2.6.2+ds1-5_all.deb ... 648s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 649s Selecting previously unselected package r-cran-later. 649s Preparing to unpack .../251-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 649s Unpacking r-cran-later (1.3.2+dfsg-1) ... 649s Selecting previously unselected package r-cran-promises. 649s Preparing to unpack .../252-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 649s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 649s Selecting previously unselected package r-cran-httpuv. 649s Preparing to unpack .../253-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 649s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 649s Selecting previously unselected package r-cran-sourcetools. 649s Preparing to unpack .../254-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 649s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 650s Selecting previously unselected package r-cran-withr. 650s Preparing to unpack .../255-r-cran-withr_2.5.0-1_all.deb ... 650s Unpacking r-cran-withr (2.5.0-1) ... 650s Selecting previously unselected package r-cran-commonmark. 650s Preparing to unpack .../256-r-cran-commonmark_1.9.1-1_arm64.deb ... 650s Unpacking r-cran-commonmark (1.9.1-1) ... 650s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 650s Preparing to unpack .../257-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 650s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 650s Selecting previously unselected package r-cran-shiny. 650s Preparing to unpack .../258-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 650s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 651s Selecting previously unselected package r-cran-rmarkdown. 651s Preparing to unpack .../259-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 651s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 652s Selecting previously unselected package r-cran-bookdown. 652s Preparing to unpack .../260-r-cran-bookdown_0.37+dfsg-1_all.deb ... 652s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 652s Selecting previously unselected package r-cran-biocmanager. 652s Preparing to unpack .../261-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 652s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 652s Selecting previously unselected package tex-common. 652s Preparing to unpack .../262-tex-common_6.18_all.deb ... 652s Unpacking tex-common (6.18) ... 652s Selecting previously unselected package t1utils. 653s Preparing to unpack .../263-t1utils_1.41-4build2_arm64.deb ... 653s Unpacking t1utils (1.41-4build2) ... 653s Selecting previously unselected package texlive-binaries. 653s Preparing to unpack .../264-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 653s Unpacking texlive-binaries (2023.20230311.66589-9) ... 656s Selecting previously unselected package texlive-base. 656s Preparing to unpack .../265-texlive-base_2023.20240207-1_all.deb ... 656s Unpacking texlive-base (2023.20240207-1) ... 662s Selecting previously unselected package texlive-latex-base. 662s Preparing to unpack .../266-texlive-latex-base_2023.20240207-1_all.deb ... 662s Unpacking texlive-latex-base (2023.20240207-1) ... 664s Selecting previously unselected package texlive-bibtex-extra. 664s Preparing to unpack .../267-texlive-bibtex-extra_2023.20240207-1_all.deb ... 664s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 683s Selecting previously unselected package r-bioc-biocstyle. 683s Preparing to unpack .../268-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 683s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 683s Selecting previously unselected package r-bioc-sparsematrixstats. 683s Preparing to unpack .../269-r-bioc-sparsematrixstats_1.14.0+dfsg-1_arm64.deb ... 683s Unpacking r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 684s Selecting previously unselected package r-bioc-delayedmatrixstats. 684s Preparing to unpack .../270-r-bioc-delayedmatrixstats_1.24.0+ds-1_all.deb ... 684s Unpacking r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 684s Selecting previously unselected package r-cran-statmod. 684s Preparing to unpack .../271-r-cran-statmod_1.5.0-1_arm64.deb ... 684s Unpacking r-cran-statmod (1.5.0-1) ... 684s Selecting previously unselected package r-bioc-limma. 684s Preparing to unpack .../272-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 684s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 684s Selecting previously unselected package r-cran-locfit. 685s Preparing to unpack .../273-r-cran-locfit_1.5-9.8-1_arm64.deb ... 685s Unpacking r-cran-locfit (1.5-9.8-1) ... 685s Selecting previously unselected package r-bioc-edger. 685s Preparing to unpack .../274-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 685s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 686s Selecting previously unselected package r-cran-survival. 686s Preparing to unpack .../275-r-cran-survival_3.5-8-1_arm64.deb ... 686s Unpacking r-cran-survival (3.5-8-1) ... 686s Selecting previously unselected package r-bioc-genefilter. 686s Preparing to unpack .../276-r-bioc-genefilter_1.84.0-1_arm64.deb ... 686s Unpacking r-bioc-genefilter (1.84.0-1) ... 686s Selecting previously unselected package r-bioc-genomicranges. 687s Preparing to unpack .../277-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 687s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 687s Selecting previously unselected package r-bioc-graph. 687s Preparing to unpack .../278-r-bioc-graph_1.80.0-1_arm64.deb ... 687s Unpacking r-bioc-graph (1.80.0-1) ... 687s Selecting previously unselected package r-bioc-gseabase. 687s Preparing to unpack .../279-r-bioc-gseabase_1.64.0+ds-1_all.deb ... 687s Unpacking r-bioc-gseabase (1.64.0+ds-1) ... 688s Selecting previously unselected package r-bioc-summarizedexperiment. 688s Preparing to unpack .../280-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 688s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 688s Selecting previously unselected package r-bioc-singlecellexperiment. 688s Preparing to unpack .../281-r-bioc-singlecellexperiment_1.24.0+ds-1_all.deb ... 688s Unpacking r-bioc-singlecellexperiment (1.24.0+ds-1) ... 688s Selecting previously unselected package r-bioc-rhdf5lib. 688s Preparing to unpack .../282-r-bioc-rhdf5lib_1.24.2+dfsg-1_arm64.deb ... 688s Unpacking r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 688s Selecting previously unselected package r-bioc-rhdf5filters. 688s Preparing to unpack .../283-r-bioc-rhdf5filters_1.14.1+dfsg-3_arm64.deb ... 688s Unpacking r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 689s Selecting previously unselected package r-bioc-rhdf5. 689s Preparing to unpack .../284-r-bioc-rhdf5_2.46.1+dfsg-1_arm64.deb ... 689s Unpacking r-bioc-rhdf5 (2.46.1+dfsg-1) ... 689s Selecting previously unselected package r-bioc-hdf5array. 689s Preparing to unpack .../285-r-bioc-hdf5array_1.30.1-1_arm64.deb ... 689s Unpacking r-bioc-hdf5array (1.30.1-1) ... 689s Selecting previously unselected package r-bioc-gsva. 689s Preparing to unpack .../286-r-bioc-gsva_1.50.0+ds-1_arm64.deb ... 689s Unpacking r-bioc-gsva (1.50.0+ds-1) ... 690s Selecting previously unselected package r-bioc-org.hs.eg.db. 690s Preparing to unpack .../287-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 690s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 699s Selecting previously unselected package r-cran-backports. 700s Preparing to unpack .../288-r-cran-backports_1.4.1-1_arm64.deb ... 700s Unpacking r-cran-backports (1.4.1-1) ... 700s Selecting previously unselected package r-cran-base64url. 700s Preparing to unpack .../289-r-cran-base64url_1.4-2build1_arm64.deb ... 700s Unpacking r-cran-base64url (1.4-2build1) ... 700s Selecting previously unselected package r-cran-brew. 700s Preparing to unpack .../290-r-cran-brew_1.0-10-1_all.deb ... 700s Unpacking r-cran-brew (1.0-10-1) ... 700s Selecting previously unselected package r-cran-checkmate. 700s Preparing to unpack .../291-r-cran-checkmate_2.3.1-1_arm64.deb ... 700s Unpacking r-cran-checkmate (2.3.1-1) ... 700s Selecting previously unselected package r-cran-data.table. 701s Preparing to unpack .../292-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 701s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 701s Selecting previously unselected package r-cran-hms. 701s Preparing to unpack .../293-r-cran-hms_1.1.3-1_all.deb ... 701s Unpacking r-cran-hms (1.1.3-1) ... 701s Selecting previously unselected package r-cran-prettyunits. 701s Preparing to unpack .../294-r-cran-prettyunits_1.2.0-1_all.deb ... 701s Unpacking r-cran-prettyunits (1.2.0-1) ... 701s Selecting previously unselected package r-cran-progress. 701s Preparing to unpack .../295-r-cran-progress_1.2.3-1_all.deb ... 701s Unpacking r-cran-progress (1.2.3-1) ... 701s Selecting previously unselected package r-cran-batchtools. 701s Preparing to unpack .../296-r-cran-batchtools_0.9.17+dfsg-1_arm64.deb ... 701s Unpacking r-cran-batchtools (0.9.17+dfsg-1) ... 702s Selecting previously unselected package r-cran-colorspace. 702s Preparing to unpack .../297-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 702s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 702s Selecting previously unselected package r-cran-gtable. 702s Preparing to unpack .../298-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 702s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 702s Selecting previously unselected package r-cran-isoband. 702s Preparing to unpack .../299-r-cran-isoband_0.2.7-1_arm64.deb ... 702s Unpacking r-cran-isoband (0.2.7-1) ... 702s Selecting previously unselected package r-cran-mass. 702s Preparing to unpack .../300-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 702s Unpacking r-cran-mass (7.3-60.0.1-1) ... 703s Selecting previously unselected package r-cran-nlme. 703s Preparing to unpack .../301-r-cran-nlme_3.1.164-1_arm64.deb ... 703s Unpacking r-cran-nlme (3.1.164-1) ... 703s Selecting previously unselected package r-cran-mgcv. 703s Preparing to unpack .../302-r-cran-mgcv_1.9-1-1_arm64.deb ... 703s Unpacking r-cran-mgcv (1.9-1-1) ... 704s Selecting previously unselected package r-cran-farver. 704s Preparing to unpack .../303-r-cran-farver_2.1.1-1_arm64.deb ... 704s Unpacking r-cran-farver (2.1.1-1) ... 704s Selecting previously unselected package r-cran-labeling. 704s Preparing to unpack .../304-r-cran-labeling_0.4.3-1_all.deb ... 704s Unpacking r-cran-labeling (0.4.3-1) ... 704s Selecting previously unselected package r-cran-munsell. 704s Preparing to unpack .../305-r-cran-munsell_0.5.0-2build1_all.deb ... 704s Unpacking r-cran-munsell (0.5.0-2build1) ... 704s Selecting previously unselected package r-cran-rcolorbrewer. 704s Preparing to unpack .../306-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 704s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 704s Selecting previously unselected package r-cran-viridislite. 704s Preparing to unpack .../307-r-cran-viridislite_0.4.2-2_all.deb ... 704s Unpacking r-cran-viridislite (0.4.2-2) ... 705s Selecting previously unselected package r-cran-scales. 705s Preparing to unpack .../308-r-cran-scales_1.3.0-1_all.deb ... 705s Unpacking r-cran-scales (1.3.0-1) ... 705s Selecting previously unselected package r-cran-fansi. 705s Preparing to unpack .../309-r-cran-fansi_1.0.5-1_arm64.deb ... 705s Unpacking r-cran-fansi (1.0.5-1) ... 705s Selecting previously unselected package r-cran-utf8. 705s Preparing to unpack .../310-r-cran-utf8_1.2.4-1_arm64.deb ... 705s Unpacking r-cran-utf8 (1.2.4-1) ... 705s Selecting previously unselected package r-cran-pillar. 705s Preparing to unpack .../311-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 705s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 705s Selecting previously unselected package r-cran-tibble. 706s Preparing to unpack .../312-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 706s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 706s Selecting previously unselected package r-cran-ggplot2. 706s Preparing to unpack .../313-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 706s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 706s Selecting previously unselected package r-cran-htmlwidgets. 707s Preparing to unpack .../314-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 707s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 707s Selecting previously unselected package r-cran-miniui. 707s Preparing to unpack .../315-r-cran-miniui_0.1.1.1-3build1_all.deb ... 707s Unpacking r-cran-miniui (0.1.1.1-3build1) ... 707s Selecting previously unselected package r-cran-shinyjs. 707s Preparing to unpack .../316-r-cran-shinyjs_2.1.0-1_all.deb ... 707s Unpacking r-cran-shinyjs (2.1.0-1) ... 707s Selecting previously unselected package r-cran-colourpicker. 707s Preparing to unpack .../317-r-cran-colourpicker_1.3.0+dfsg-1_all.deb ... 707s Unpacking r-cran-colourpicker (1.3.0+dfsg-1) ... 707s Selecting previously unselected package r-cran-lazyeval. 707s Preparing to unpack .../318-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 707s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 708s Selecting previously unselected package r-cran-crosstalk. 708s Preparing to unpack .../319-r-cran-crosstalk_1.2.1+dfsg-1_all.deb ... 708s Unpacking r-cran-crosstalk (1.2.1+dfsg-1) ... 708s Selecting previously unselected package r-cran-generics. 708s Preparing to unpack .../320-r-cran-generics_0.1.3-1_all.deb ... 708s Unpacking r-cran-generics (0.1.3-1) ... 708s Selecting previously unselected package r-cran-tidyselect. 708s Preparing to unpack .../321-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 708s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 708s Selecting previously unselected package r-cran-dplyr. 708s Preparing to unpack .../322-r-cran-dplyr_1.1.4-1_arm64.deb ... 708s Unpacking r-cran-dplyr (1.1.4-1) ... 709s Selecting previously unselected package r-cran-globals. 709s Preparing to unpack .../323-r-cran-globals_0.16.2-1_all.deb ... 709s Unpacking r-cran-globals (0.16.2-1) ... 709s Selecting previously unselected package r-cran-listenv. 709s Preparing to unpack .../324-r-cran-listenv_0.9.1+dfsg-1_all.deb ... 709s Unpacking r-cran-listenv (0.9.1+dfsg-1) ... 709s Selecting previously unselected package r-cran-parallelly. 709s Preparing to unpack .../325-r-cran-parallelly_1.37.1-1_arm64.deb ... 709s Unpacking r-cran-parallelly (1.37.1-1) ... 709s Selecting previously unselected package r-cran-future. 709s Preparing to unpack .../326-r-cran-future_1.33.1+dfsg-1_all.deb ... 709s Unpacking r-cran-future (1.33.1+dfsg-1) ... 709s Selecting previously unselected package r-cran-future.apply. 709s Preparing to unpack .../327-r-cran-future.apply_1.11.1+dfsg-1_all.deb ... 709s Unpacking r-cran-future.apply (1.11.1+dfsg-1) ... 710s Selecting previously unselected package r-cran-future.batchtools. 710s Preparing to unpack .../328-r-cran-future.batchtools_0.12.1+dfsg-1_all.deb ... 710s Unpacking r-cran-future.batchtools (0.12.1+dfsg-1) ... 710s Selecting previously unselected package r-cran-purrr. 710s Preparing to unpack .../329-r-cran-purrr_1.0.2-1_arm64.deb ... 710s Unpacking r-cran-purrr (1.0.2-1) ... 710s Selecting previously unselected package r-cran-tidyr. 710s Preparing to unpack .../330-r-cran-tidyr_1.3.1-1_arm64.deb ... 710s Unpacking r-cran-tidyr (1.3.1-1) ... 710s Selecting previously unselected package r-cran-plotly. 710s Preparing to unpack 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Setting up fonts-mathjax (2.7.9+dfsg-1) ... 713s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 713s Setting up libxpm4:arm64 (1:3.5.17-1) ... 714s Setting up hdf5-helpers (1.10.10+repack-3ubuntu1) ... 714s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 714s Setting up libxi6:arm64 (2:1.8.1-1) ... 714s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 714s Setting up libdatrie1:arm64 (0.2.13-3) ... 714s Setting up libjs-popper.js (1.16.1+ds-6) ... 714s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 714s Setting up libxcb-render0:arm64 (1.15-1) ... 714s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 714s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 714s Setting up libjs-lunr (2.3.9~dfsg-2) ... 714s Setting up unzip (6.0-28ubuntu3) ... 714s Setting up liblatex-tounicode-perl (0.54-2) ... 714s Setting up x11-common (1:7.7+23ubuntu2) ... 716s Setting up node-html5shiv (3.7.3+dfsg-5) ... 716s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 716s Setting up libdeflate0:arm64 (1.19-1) ... 716s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 716s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 716s Setting up libxcb-shm0:arm64 (1.15-1) ... 716s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 716s Setting up libpaper-utils (1.1.29) ... 716s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 716s Setting up libjs-modernizr (2.6.2+ds1-5) ... 716s Setting up libjbig0:arm64 (2.1-6.1ubuntu1) ... 716s Setting up libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 716s Setting up libaec0:arm64 (1.1.2-1) ... 716s Setting up libsnappy1v5:arm64 (1.1.10-1) ... 716s Setting up libjs-es5-shim (4.6.7-2) ... 716s Setting up tex-common (6.18) ... 718s update-language: texlive-base not installed and configured, doing nothing! 718s Setting up libio-string-perl (1.08-4) ... 718s Setting up zip (3.0-13) ... 718s Setting up libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 719s Setting up libblas3:arm64 (3.12.0-3) ... 719s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 719s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 719s Setting up libpkgconf3:arm64 (1.8.1-2) ... 719s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 719s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 719s Setting up t1utils (1.41-4build2) ... 719s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 719s Setting up libjs-d3 (3.5.17-4) ... 719s Setting up fonts-dejavu-mono (2.37-8) ... 719s Setting up libssl-dev:arm64 (3.0.13-0ubuntu1) ... 719s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 719s Setting up libmpc3:arm64 (1.3.1-1) ... 719s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 719s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 719s Setting up icu-devtools (74.2-1ubuntu1) ... 719s Setting up fonts-dejavu-core (2.37-8) ... 719s Setting up pkgconf-bin (1.8.1-2) ... 719s Setting up libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 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libsz2:arm64 (1.1.2-1) ... 720s Setting up dctrl-tools (2.24-3build2) ... 720s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 720s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 720s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 720s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 720s Setting up libpotrace0:arm64 (1.16-2) ... 720s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 720s Setting up libice6:arm64 (2:1.0.10-1build2) ... 720s Setting up liblapack3:arm64 (3.12.0-3) ... 720s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode 720s Setting up cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 720s Setting up libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 720s Setting up fontconfig-config (2.15.0-1ubuntu1) ... 722s Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 722s Setting up libaec-dev:arm64 (1.1.2-1) ... 722s Setting up libbibtex-parser-perl (1.04+dfsg-1) ... 722s Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... 722s Setting up pkgconf:arm64 (1.8.1-2) ... 722s Setting up libthai0:arm64 (0.1.29-2) ... 722s Setting up cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 722s Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... 722s Setting up libptexenc1:arm64 (2023.20230311.66589-9) ... 722s Setting up pandoc (3.1.3+ds-2) ... 722s Setting up libcurl4-openssl-dev:arm64 (8.5.0-2ubuntu7) ... 722s Setting up liblapack-dev:arm64 (3.12.0-3) ... 722s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode 722s Setting up pkg-config:arm64 (1.8.1-2) ... 722s Setting up libhdf5-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 722s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 722s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 722s Setting up libhdf5-cpp-103-1:arm64 (1.10.10+repack-3ubuntu1) ... 722s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 722s Setting up curl (8.5.0-2ubuntu7) ... 722s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 722s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 722s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 722s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 722s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 722s Setting up libhdf5-hl-100:arm64 (1.10.10+repack-3ubuntu1) ... 722s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 722s Setting up fontconfig (2.15.0-1ubuntu1) ... 725s Regenerating fonts cache... done. 725s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 725s Setting up libxft2:arm64 (2.3.6-1) ... 725s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 725s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 725s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 725s Setting up cpp-13 (13.2.0-17ubuntu2) ... 725s Setting up libtk8.6:arm64 (8.6.13-2) ... 725s Setting up libpango-1.0-0:arm64 (1.51.0+ds-4) ... 725s Setting up gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 725s Setting up libreadline-dev:arm64 (8.2-3.1) ... 725s Setting up libcairo2:arm64 (1.18.0-1) ... 725s Setting up libhdf5-hl-cpp-100:arm64 (1.10.10+repack-3ubuntu1) ... 725s Setting up libxt6t64:arm64 (1:1.2.1-1.2) ... 725s Setting up gcc-13 (13.2.0-17ubuntu2) ... 725s Setting up libhdf5-fortran-102:arm64 (1.10.10+repack-3ubuntu1) ... 725s Setting up zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 725s Setting up cpp (4:13.2.0-7ubuntu1) ... 725s Setting up libhdf5-hl-fortran-100:arm64 (1.10.10+repack-3ubuntu1) ... 725s Setting up libboost-dev:arm64 (1.83.0.1ubuntu2) ... 725s Setting up libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 725s Setting up libjpeg8-dev:arm64 (8c-2ubuntu11) ... 725s Setting up libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 725s Setting up g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 725s Setting up gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 725s Setting up g++-13 (13.2.0-17ubuntu2) ... 725s Setting up libxmu6:arm64 (2:1.1.3-3) ... 725s Setting up libpng-dev:arm64 (1.6.43-3) ... 725s Setting up libjpeg-dev:arm64 (8c-2ubuntu11) ... 725s Setting up gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 725s Setting up libxaw7:arm64 (2:1.0.14-1) ... 725s Setting up gcc (4:13.2.0-7ubuntu1) ... 725s Setting up gfortran-13 (13.2.0-17ubuntu2) ... 725s Setting up r-base-core (4.3.3-2build1) ... 726s 726s Creating config file /etc/R/Renviron with new version 726s Setting up r-cran-crayon (1.5.2-1) ... 726s Setting up libhdf5-dev (1.10.10+repack-3ubuntu1) ... 726s update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 726s Setting up r-cran-labeling (0.4.3-1) ... 726s Setting up r-cran-sourcetools (0.1.7-1-1) ... 726s Setting up r-cran-futile.options (1.0.1-3build1) ... 726s Setting up r-cran-lattice (0.22-5-1) ... 726s Setting up r-cran-nlme (3.1.164-1) ... 726s Setting up r-cran-farver (2.1.1-1) ... 726s Setting up r-cran-formatr (1.14-1) ... 726s Setting up r-cran-xml (3.99-0.16.1-1) ... 726s Setting up r-cran-viridislite (0.4.2-2) ... 726s Setting up r-cran-locfit (1.5-9.8-1) ... 726s Setting up texlive-binaries (2023.20230311.66589-9) ... 726s update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 726s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 726s Setting up r-cran-statmod (1.5.0-1) ... 726s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 726s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 726s Setting up r-cran-lazyeval (0.2.2-1build1) ... 726s Setting up r-cran-commonmark (1.9.1-1) ... 726s Setting up r-cran-r6 (2.5.1-1) ... 726s Setting up r-cran-pkgkitten (0.2.3-1) ... 726s Setting up texlive-base (2023.20240207-1) ... 729s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 730s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 731s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 733s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 735s Setting up r-cran-magrittr (2.0.3-1) ... 735s Setting up r-cran-rappdirs (0.3.3-1) ... 735s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 736s Setting up r-cran-littler (0.3.19-1) ... 736s Setting up r-cran-bh (1.84.0-1) ... 736s Setting up r-cran-fs (1.6.3+dfsg-1) ... 736s Setting up r-cran-rcpp (1.0.12-1) ... 736s Setting up r-cran-curl (5.2.0+dfsg-1) ... 736s Setting up r-cran-codetools (0.2-19-1) ... 736s Setting up r-bioc-biocgenerics (0.48.1-2) ... 736s Setting up r-cran-rlang (1.1.3-1) ... 736s Setting up r-cran-matrixstats (1.2.0-1) ... 736s Setting up r-cran-listenv (0.9.1+dfsg-1) ... 736s Setting up littler (0.3.19-1) ... 736s Setting up r-bioc-matrixgenerics (1.14.0-1) ... 736s Setting up r-cran-xfun (0.41+dfsg-1) ... 736s Setting up r-cran-sys (3.4.2-1) ... 736s Setting up r-cran-plogr (0.2.0-3build1) ... 736s Setting up r-cran-withr (2.5.0-1) ... 736s Setting up r-cran-backports (1.4.1-1) ... 736s Setting up r-cran-mime (0.12-1) ... 736s Setting up r-cran-generics (0.1.3-1) ... 736s Setting up r-cran-base64enc (0.1-3-3) ... 736s Setting up r-cran-abind (1.4-5-2) ... 736s Setting up r-cran-digest (0.6.34-1) ... 736s Setting up r-cran-yaml (2.3.8-1) ... 736s Setting up r-cran-lambda.r (1.2.4-2build1) ... 736s Setting up r-cran-evaluate (0.23-1) ... 736s Setting up r-cran-dbi (1.2.2-1) ... 736s Setting up r-cran-highr (0.10+dfsg-1) ... 736s Setting up r-cran-prettyunits (1.2.0-1) ... 736s Setting up r-cran-fansi (1.0.5-1) ... 736s Setting up r-bioc-rhdf5lib (1.24.2+dfsg-1) ... 736s Setting up r-cran-mass (7.3-60.0.1-1) ... 736s Setting up r-cran-checkmate (2.3.1-1) ... 736s Setting up r-cran-snow (1:0.4.4-2) ... 736s Setting up r-cran-data.table (1.14.10+dfsg-1) ... 736s Setting up r-cran-glue (1.7.0-1) ... 736s Setting up r-bioc-rhdf5filters (1.14.1+dfsg-3) ... 736s Setting up r-cran-bit (4.0.5-1) ... 736s Setting up r-cran-xtable (1:1.8-4-2) ... 736s Setting up r-cran-cli (3.6.2-1) ... 736s Setting up gfortran (4:13.2.0-7ubuntu1) ... 736s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 736s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 736s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 736s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 736s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 736s Setting up r-cran-bitops (1.0-7-1) ... 736s Setting up r-cran-bit64 (4.0.5-1) ... 736s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 736s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 736s Setting up r-cran-askpass (1.2.0-1) ... 736s Setting up r-cran-fastmap (1.1.1-1) ... 736s Setting up r-cran-png (0.1-8-1) ... 736s Setting up r-bioc-biobase (2.62.0-1) ... 736s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 736s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 736s Setting up r-cran-utf8 (1.2.4-1) ... 736s Setting up r-cran-brew (1.0-10-1) ... 736s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 736s Setting up r-cran-parallelly (1.37.1-1) ... 736s Setting up r-cran-stringi (1.8.3-1) ... 736s Setting up texlive-latex-base (2023.20240207-1) ... 736s Setting up r-cran-cpp11 (0.4.7-1) ... 736s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 736s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 736s Setting up r-cran-isoband (0.2.7-1) ... 736s Setting up r-cran-runit (0.4.32-3) ... 736s Setting up r-cran-futile.logger (1.4.3-4build1) ... 736s Setting up r-bioc-limma (3.58.1+dfsg-1) ... 736s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 736s Setting up r-cran-later (1.3.2+dfsg-1) ... 736s Setting up r-cran-matrix (1.6-5-1) ... 736s Setting up r-cran-tinytex (0.49-1) ... 736s Setting up r-cran-irlba (2.3.5.1-2) ... 736s Setting up r-cran-knitr (1.45+dfsg-1) ... 736s Setting up r-cran-mgcv (1.9-1-1) ... 736s Setting up g++ (4:13.2.0-7ubuntu1) ... 736s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 736s Setting up r-cran-cachem (1.0.8-1) ... 736s Setting up build-essential (12.10ubuntu1) ... 736s Setting up r-bioc-iranges (2.36.0-1) ... 736s Setting up r-cran-globals (0.16.2-1) ... 736s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 736s Setting up r-bioc-sparsematrixstats (1.14.0+dfsg-1) ... 736s Setting up r-cran-vctrs (0.6.5-1) ... 736s Setting up r-bioc-graph (1.80.0-1) ... 736s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 736s Setting up r-cran-ellipsis (0.3.2-2) ... 736s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 736s Setting up r-cran-base64url (1.4-2build1) ... 736s Setting up r-base-dev (4.3.3-2build1) ... 736s Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ... 736s Setting up r-cran-stringr (1.5.1-1) ... 736s Setting up r-bioc-biocparallel (1.36.0-1) ... 736s Setting up r-bioc-edger (4.0.16+dfsg-1) ... 736s Setting up r-bioc-rhdf5 (2.46.1+dfsg-1) ... 736s Setting up r-cran-munsell (0.5.0-2build1) ... 736s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 736s Setting up r-cran-survival (3.5-8-1) ... 736s Setting up r-cran-future (1.33.1+dfsg-1) ... 736s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 736s Setting up texlive-bibtex-extra (2023.20240207-1) ... 736s Setting up r-cran-rsvd (1.0.5-1) ... 736s Setting up r-cran-future.apply (1.11.1+dfsg-1) ... 736s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 736s Setting up r-cran-httr (1.4.7+dfsg-1) ... 736s Setting up r-cran-hms (1.1.3-1) ... 736s Setting up r-cran-scales (1.3.0-1) ... 736s Setting up r-cran-memoise (2.0.1-1) ... 736s Setting up r-cran-promises (1.2.1+dfsg-1) ... 736s Setting up r-cran-purrr (1.0.2-1) ... 736s Setting up r-cran-blob (1.2.4-1) ... 736s Setting up r-cran-htmltools (0.5.7-1) ... 736s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 736s Setting up r-bioc-xvector (0.42.0-1) ... 736s Setting up r-cran-sass (0.4.8+dfsg-1) ... 736s Setting up r-cran-dplyr (1.1.4-1) ... 736s Setting up r-cran-rsqlite (2.3.4-1) ... 736s Setting up r-cran-progress (1.2.3-1) ... 736s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 736s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 736s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 736s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 736s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 736s Setting up r-cran-fontawesome (0.5.2-1) ... 736s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 736s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 736s Setting up r-cran-tidyr (1.3.1-1) ... 736s Setting up r-cran-batchtools (0.9.17+dfsg-1) ... 736s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 736s Setting up r-bioc-hdf5array (1.30.1-1) ... 736s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 736s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 736s Setting up r-bioc-annotationdbi (1.64.1-1) ... 736s Setting up r-bioc-delayedmatrixstats (1.24.0+ds-1) ... 736s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 736s Setting up r-cran-shinyjs (2.1.0-1) ... 736s Setting up r-cran-miniui (0.1.1.1-3build1) ... 736s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 736s Setting up r-cran-future.batchtools (0.12.1+dfsg-1) ... 736s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 736s Setting up r-bioc-beachmat (2.18.1+ds-1) ... 736s Setting up r-bioc-genefilter (1.84.0-1) ... 736s Setting up r-bioc-scaledmatrix (1.10.0+dfsg-1) ... 736s Setting up r-cran-shinydashboard (0.7.2-1) ... 736s Setting up r-cran-bookdown (0.37+dfsg-1) ... 736s Setting up r-cran-crosstalk (1.2.1+dfsg-1) ... 736s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 736s Setting up r-bioc-singlecellexperiment (1.24.0+ds-1) ... 736s Setting up r-bioc-gseabase (1.64.0+ds-1) ... 736s Setting up r-bioc-biocsingular (1.18.0+ds-1) ... 736s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 736s Setting up r-cran-colourpicker (1.3.0+dfsg-1) ... 736s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 736s Setting up r-bioc-gsva (1.50.0+ds-1) ... 736s Setting up r-cran-plotly (4.10.4+dfsg-2) ... 736s Setting up autopkgtest-satdep (0) ... 736s Processing triggers for man-db (2.12.0-3) ... 741s Processing triggers for install-info (7.1-3) ... 741s Processing triggers for libc-bin (2.39-0ubuntu2) ... 741s Processing triggers for tex-common (6.18) ... 744s Running updmap-sys. This may take some time... done. 744s Running mktexlsr /var/lib/texmf ... done. 744s Building format(s) --all. 878s This may take some time... done. 925s (Reading database ... 129172 files and directories currently installed.) 925s Removing autopkgtest-satdep (0) ... 927s autopkgtest [17:49:33]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 927s autopkgtest [17:49:33]: test pkg-r-autopkgtest: [----------------------- 928s Test: Try to load the R library GSVA 928s 928s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 928s Copyright (C) 2024 The R Foundation for Statistical Computing 928s Platform: aarch64-unknown-linux-gnu (64-bit) 928s 928s R is free software and comes with ABSOLUTELY NO WARRANTY. 928s You are welcome to redistribute it under certain conditions. 928s Type 'license()' or 'licence()' for distribution details. 928s 928s R is a collaborative project with many contributors. 928s Type 'contributors()' for more information and 928s 'citation()' on how to cite R or R packages in publications. 928s 928s Type 'demo()' for some demos, 'help()' for on-line help, or 928s 'help.start()' for an HTML browser interface to help. 928s Type 'q()' to quit R. 928s 929s > library('GSVA') 969s > 969s > 969s Other tests are currently unsupported! 969s They will be progressively added. 970s autopkgtest [17:50:16]: test pkg-r-autopkgtest: -----------------------] 971s pkg-r-autopkgtest PASS 971s autopkgtest [17:50:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 971s autopkgtest [17:50:17]: @@@@@@@@@@@@@@@@@@@@ summary 971s run-unit-test PASS 971s pkg-r-autopkgtest PASS 983s Creating nova instance adt-noble-arm64-r-bioc-gsva-20240316-173406-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)... 983s Creating nova instance adt-noble-arm64-r-bioc-gsva-20240316-173406-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240316.img (UUID 9d2e92bf-2787-45c2-ae22-99fb4bcc175e)...