0s autopkgtest [17:33:57]: starting date and time: 2024-03-16 17:33:57+0000 0s autopkgtest [17:33:57]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:33:57]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work._e5m0pu7/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-gseabase --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-23.secgroup --name adt-noble-arm64-r-bioc-gseabase-20240316-173357-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 64s autopkgtest [17:35:01]: testbed dpkg architecture: arm64 65s autopkgtest [17:35:02]: testbed apt version: 2.7.12 65s autopkgtest [17:35:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 65s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 66s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 66s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 66s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 66s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 66s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 66s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 66s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 66s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 66s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 66s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 66s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 66s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 68s Fetched 9060 kB in 2s (4201 kB/s) 68s Reading package lists... 71s Reading package lists... 71s Building dependency tree... 71s Reading state information... 72s Calculating upgrade... 72s The following packages will be REMOVED: 72s libglib2.0-0 libssl3 72s The following NEW packages will be installed: 72s libglib2.0-0t64 libssl3t64 xdg-user-dirs 72s The following packages have been kept back: 72s curl 72s The following packages will be upgraded: 72s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 72s ubuntu-minimal ubuntu-standard 72s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 72s Need to get 4613 kB of archives. 72s After this operation, 211 kB of additional disk space will be used. 72s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 73s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 73s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 73s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 73s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 73s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 73s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 73s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 73s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 73s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 73s Fetched 4613 kB in 1s (6357 kB/s) 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 74s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 74s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 74s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 74s udisks2 depends on libglib2.0-0 (>= 2.77.0). 74s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 74s python3-gi depends on libglib2.0-0 (>= 2.77.0). 74s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 74s netplan.io depends on libglib2.0-0 (>= 2.70.0). 74s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 74s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 74s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 74s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 74s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 74s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 74s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 74s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 74s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 74s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 74s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 74s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 74s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 74s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 74s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 74s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 74s fwupd depends on libglib2.0-0 (>= 2.79.0). 74s bolt depends on libglib2.0-0 (>= 2.56.0). 74s 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 74s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 74s Selecting previously unselected package libglib2.0-0t64:arm64. 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 74s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 74s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 74s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 74s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 74s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 74s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 74s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 74s wget depends on libssl3 (>= 3.0.0). 74s u-boot-tools depends on libssl3 (>= 3.0.0). 74s tnftp depends on libssl3 (>= 3.0.0). 74s tcpdump depends on libssl3 (>= 3.0.0). 74s systemd-resolved depends on libssl3 (>= 3.0.0). 74s systemd depends on libssl3 (>= 3.0.0). 74s sudo depends on libssl3 (>= 3.0.0). 74s sbsigntool depends on libssl3 (>= 3.0.0). 74s rsync depends on libssl3 (>= 3.0.0). 74s python3-cryptography depends on libssl3 (>= 3.0.0). 74s openssh-server depends on libssl3 (>= 3.0.10). 74s openssh-client depends on libssl3 (>= 3.0.10). 74s mtd-utils depends on libssl3 (>= 3.0.0). 74s mokutil depends on libssl3 (>= 3.0.0). 74s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 74s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 74s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 74s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 74s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 74s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 74s libnvme1 depends on libssl3 (>= 3.0.0). 74s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 74s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 74s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 74s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 74s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 74s kmod depends on libssl3 (>= 3.0.0). 74s dhcpcd-base depends on libssl3 (>= 3.0.0). 74s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 74s 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 74s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 74s Selecting previously unselected package libssl3t64:arm64. 74s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 74s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 74s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 74s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 74s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 74s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 74s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 74s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 74s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 74s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 74s Unpacking ubuntu-minimal (1.536) over (1.535) ... 74s Selecting previously unselected package xdg-user-dirs. 74s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 74s Unpacking xdg-user-dirs (0.18-1) ... 74s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 74s Unpacking ubuntu-standard (1.536) over (1.535) ... 74s Setting up ubuntu-minimal (1.536) ... 74s Setting up xdg-user-dirs (0.18-1) ... 74s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 74s Setting up libtirpc-common (1.3.4+ds-1.1) ... 74s Setting up ubuntu-standard (1.536) ... 74s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 75s No schema files found: doing nothing. 75s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 75s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 75s Setting up openssl (3.0.13-0ubuntu1) ... 75s Setting up readline-common (8.2-3.1) ... 75s Processing triggers for man-db (2.12.0-3) ... 75s Processing triggers for install-info (7.1-3) ... 76s Processing triggers for libc-bin (2.39-0ubuntu2) ... 76s Reading package lists... 77s Building dependency tree... 77s Reading state information... 77s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 78s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 78s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 78s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 78s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 79s Reading package lists... 79s Reading package lists... 80s Building dependency tree... 80s Reading state information... 80s Calculating upgrade... 80s The following packages have been kept back: 80s curl 80s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 80s Reading package lists... 81s Building dependency tree... 81s Reading state information... 81s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 84s autopkgtest [17:35:21]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 84s autopkgtest [17:35:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-gseabase 86s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (dsc) [2199 B] 86s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (tar) [63.2 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-gseabase 1.64.0+ds-1 (diff) [14.0 kB] 87s gpgv: Signature made Thu Nov 30 16:58:02 2023 UTC 87s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 87s gpgv: issuer "tille@debian.org" 87s gpgv: Can't check signature: No public key 87s dpkg-source: warning: cannot verify inline signature for ./r-bioc-gseabase_1.64.0+ds-1.dsc: no acceptable signature found 87s autopkgtest [17:35:24]: testing package r-bioc-gseabase version 1.64.0+ds-1 88s autopkgtest [17:35:25]: build not needed 89s autopkgtest [17:35:26]: test pkg-r-autopkgtest: preparing testbed 90s Reading package lists... 90s Building dependency tree... 90s Reading state information... 90s Starting pkgProblemResolver with broken count: 0 91s Starting 2 pkgProblemResolver with broken count: 0 91s Done 91s The following additional packages will be installed: 91s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 91s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 91s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 91s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 91s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 91s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 91s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 91s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libbz2-dev 91s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libcurl4t64 91s libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev 91s libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 91s libicu-dev libio-string-perl libisl23 libitm1 libjbig0 libjpeg-dev 91s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 91s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 91s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 91s libjs-lunr libjs-mathjax libjs-microplugin.js libjs-modernizr 91s libjs-popper.js libjs-prettify libjs-sifter.js 91s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 91s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 91s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 91s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 91s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 91s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 91s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 91s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 91s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 91s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 91s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 91s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 91s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 91s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biostrings 91s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-graph 91s r-bioc-gseabase r-bioc-iranges r-bioc-keggrest r-bioc-org.hs.eg.db 91s r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 91s r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 91s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 91s r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 r-cran-crayon 91s r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest 91s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 91s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 91s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 91s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 91s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 91s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 91s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 91s r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-rlang r-cran-rmarkdown 91s r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 91s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 91s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 91s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto 91s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 91s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 91s Suggested packages: 91s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 91s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 91s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 91s | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs 91s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 91s readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 91s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 91s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 91s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 91s r-base-html texlive-plain-generic texlive-fonts-recommended 91s texlive-fonts-extra texlive-extra-utils texinfo r-bioc-genefilter r-bioc-all 91s r-bioc-genomicranges r-bioc-delayedarray r-bioc-rsamtools r-bioc-affy 91s r-bioc-deseq2 r-bioc-bsgenome r-bioc-genomicfeatures r-cran-r.utils 91s r-cran-data.table r-bioc-genomicalignments r-cran-sparsem r-bioc-rbgl 91s r-cran-cluster r-cran-markdown r-bioc-summarizedexperiment r-cran-matrix 91s r-bioc-shortread r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-spelling 91s r-cran-rstudioapi r-cran-rmysql r-cran-getopt r-cran-dplyr 91s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 91s r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-inline 91s r-cran-bench r-cran-here r-cran-hms r-cran-purrr r-cran-tidyr r-cran-plm 91s r-cran-zoo debhelper ghostscript gv | postscript-viewer perl-tk xpdf 91s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 91s wp2latex 91s Recommended packages: 91s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 91s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 91s r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui r-cran-rsconnect 91s r-cran-testit r-cran-tufte r-cran-xml2 r-cran-webshot r-cran-covr 91s r-cran-ggplot2 r-cran-thematic r-cran-cliapp r-cran-mockery r-cran-whoami 91s r-cran-bench r-cran-decor r-cran-lobstr r-cran-progress r-cran-scales 91s r-cran-spelling r-cran-webutils r-cran-gh r-cran-lattice r-cran-unitizer 91s r-cran-dplyr r-cran-rsvg r-cran-cairo r-cran-markdown r-cran-ragg 91s r-cran-jpeg r-cran-readr r-cran-r.rsp r-cran-sf r-cran-codetools 91s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 91s r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 91s r-cran-tidyverse r-cran-sodium r-cran-lubridate r-cran-mathjaxr r-cran-mockr 91s r-cran-webfakes r-cran-future r-cran-purrr r-cran-pingr r-cran-usethis 91s r-cran-dygraphs r-cran-dbitest r-cran-gert r-cran-hms r-cran-rvest 91s r-cran-data.table r-cran-formattable r-cran-generics r-cran-pkgdown 91s r-cran-zeallot r-cran-renv lmodern dvisvgm libfile-mimeinfo-perl 91s libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils 91s The following packages will be REMOVED: 91s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 91s The following NEW packages will be installed: 91s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 91s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 91s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 91s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 91s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 91s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 91s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 91s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 91s libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev 91s libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 91s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 91s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 91s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 91s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 91s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 91s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 91s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 91s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 91s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 91s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 91s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 91s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 91s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 91s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 91s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 91s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 91s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 91s libzzip-0-13 linux-libc-dev littler node-bootstrap-sass node-html5shiv 91s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 91s pkgconf-bin r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi 91s r-bioc-biobase r-bioc-biocgenerics r-bioc-biocstyle r-bioc-biostrings 91s r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-go.db r-bioc-graph 91s r-bioc-gseabase r-bioc-iranges r-bioc-keggrest r-bioc-org.hs.eg.db 91s r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-askpass 91s r-cran-base64enc r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops 91s r-cran-blob r-cran-bookdown r-cran-brio r-cran-bslib r-cran-cachem 91s r-cran-callr r-cran-cli r-cran-commonmark r-cran-cpp11 r-cran-crayon 91s r-cran-curl r-cran-dbi r-cran-desc r-cran-diffobj r-cran-digest 91s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 91s r-cran-fontawesome r-cran-fs r-cran-glue r-cran-highr r-cran-htmltools 91s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 91s r-cran-later r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-memoise 91s r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 91s r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-png r-cran-praise 91s r-cran-processx r-cran-promises r-cran-ps r-cran-r6 r-cran-rappdirs 91s r-cran-rcpp r-cran-rcurl r-cran-rematch2 r-cran-rlang r-cran-rmarkdown 91s r-cran-rprojroot r-cran-rsqlite r-cran-runit r-cran-sass r-cran-shiny 91s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-sys r-cran-testthat 91s r-cran-tibble r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-waldo 91s r-cran-withr r-cran-xfun r-cran-xml r-cran-xtable r-cran-yaml rpcsvc-proto 91s t1utils tex-common texlive-base texlive-bibtex-extra texlive-binaries 91s texlive-latex-base unzip x11-common xdg-utils zip zlib1g-dev 91s The following packages will be upgraded: 91s curl 91s 1 upgraded, 258 newly installed, 5 to remove and 0 not upgraded. 91s Need to get 457 MB/457 MB of archives. 91s After this operation, 1592 MB of additional disk space will be used. 91s Get:1 /tmp/autopkgtest.fJEjQq/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [776 B] 91s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 92s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 92s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 92s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 92s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 92s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 92s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 92s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 92s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 92s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 92s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 92s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 92s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 92s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 92s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 92s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 92s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 92s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 92s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 92s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 92s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 93s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 93s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 93s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 93s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 93s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 93s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 93s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 93s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 93s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 93s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 93s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 93s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 93s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 93s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 94s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 94s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 94s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 94s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 94s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 94s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 94s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 94s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 94s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 94s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 94s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 94s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 94s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 94s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 94s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 94s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 94s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 94s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 94s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 94s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 94s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 94s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 94s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 94s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 94s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 94s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 94s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 94s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 94s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 95s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 95s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 95s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 95s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 95s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 95s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 95s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 95s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 95s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 95s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 95s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 95s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 95s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 95s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 95s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 95s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 95s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 95s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 95s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 95s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 95s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 95s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 95s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 95s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 95s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 95s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 95s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 95s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 95s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 95s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 95s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 95s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 95s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 95s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 95s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 95s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 95s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 95s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 96s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 96s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 96s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 96s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 96s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 96s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 96s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 96s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 96s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 96s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 96s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 96s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 96s Get:116 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 96s Get:117 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 96s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 96s Get:119 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 96s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 96s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 96s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 96s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 96s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 96s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 96s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 96s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 96s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 96s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 96s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 96s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 96s Get:132 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 96s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 96s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 96s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 96s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 96s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 96s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 96s Get:139 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 96s Get:140 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 96s Get:141 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 97s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 97s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 97s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 97s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 97s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 97s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 97s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 98s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 98s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 98s Get:151 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 98s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 98s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 98s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 98s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 98s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 98s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 98s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 99s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 99s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 99s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 99s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 99s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 99s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 99s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 99s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 99s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 99s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 99s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 99s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 99s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 99s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 99s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 99s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 99s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 99s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 99s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 99s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 99s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 99s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 99s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 99s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 99s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 99s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 99s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 99s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 99s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 99s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 99s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 100s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 100s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 100s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 100s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 100s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 100s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 100s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotate all 1.80.0+dfsg-1 [1730 kB] 100s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 100s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 100s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 100s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 100s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 100s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 100s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 101s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 101s Get:205 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 101s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 101s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 101s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 101s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 101s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 101s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 101s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 101s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 101s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 102s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 102s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 102s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 102s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 102s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 102s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 102s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 102s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 102s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 102s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 102s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 102s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 102s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 102s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 102s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 102s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 102s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 102s Get:232 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 102s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 102s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 103s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 103s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 106s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 106s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-go.db all 3.18.0-1 [18.7 MB] 106s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 106s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-gseabase all 1.64.0+ds-1 [717 kB] 106s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 108s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 108s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 108s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 108s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 108s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 108s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 108s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 108s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 108s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 108s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 108s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 108s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 108s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 108s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 108s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 108s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-runit all 0.4.32-3 [283 kB] 108s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 108s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 110s Preconfiguring packages ... 110s Fetched 457 MB in 17s (26.6 MB/s) 110s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 110s wget depends on libpsl5 (>= 0.16.0). 110s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 110s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 110s 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 110s Removing libpsl5:arm64 (0.21.2-1build1) ... 110s Selecting previously unselected package libpsl5t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 110s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 110s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 110s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 110s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 110s Selecting previously unselected package libcurl4t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 110s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 110s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 110s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 110s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 110s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 110s 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 110s Removing libpng16-16:arm64 (1.6.43-1) ... 110s Selecting previously unselected package libpng16-16t64:arm64. 110s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 110s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 110s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 111s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 111s parted depends on libreadline8 (>= 6.0). 111s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 111s gpgsm depends on libreadline8 (>= 6.0). 111s gpgconf depends on libreadline8 (>= 6.0). 111s gpg depends on libreadline8 (>= 6.0). 111s gawk depends on libreadline8 (>= 6.0). 111s fdisk depends on libreadline8 (>= 6.0). 111s 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 111s Removing libreadline8:arm64 (8.2-3) ... 111s Selecting previously unselected package libreadline8t64:arm64. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 111s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 111s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 111s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 111s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 111s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 111s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 111s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 111s lsof depends on libtirpc3 (>= 1.0.2). 111s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 111s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 111s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 111s iproute2 depends on libtirpc3 (>= 1.0.2). 111s 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 111s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 111s Selecting previously unselected package libtirpc3t64:arm64. 111s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 111s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 111s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 111s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 111s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 111s Selecting previously unselected package libc-dev-bin. 111s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 111s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 111s Selecting previously unselected package linux-libc-dev:arm64. 111s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 111s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 111s Selecting previously unselected package libcrypt-dev:arm64. 111s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 111s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 111s Selecting previously unselected package libtirpc-dev:arm64. 111s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 111s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 111s Selecting previously unselected package libnsl-dev:arm64. 111s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 111s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 111s Selecting previously unselected package rpcsvc-proto. 111s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 111s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 111s Selecting previously unselected package libc6-dev:arm64. 111s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 111s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 111s Selecting previously unselected package libisl23:arm64. 111s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 111s Unpacking libisl23:arm64 (0.26-3) ... 111s Selecting previously unselected package libmpc3:arm64. 111s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 111s Unpacking libmpc3:arm64 (1.3.1-1) ... 112s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 112s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package cpp-13. 112s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package cpp-aarch64-linux-gnu. 112s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package cpp. 112s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 112s Unpacking cpp (4:13.2.0-7ubuntu1) ... 112s Selecting previously unselected package libcc1-0:arm64. 112s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libgomp1:arm64. 112s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libitm1:arm64. 112s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libatomic1:arm64. 112s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libasan8:arm64. 112s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package liblsan0:arm64. 112s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libtsan2:arm64. 112s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libubsan1:arm64. 112s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libhwasan0:arm64. 112s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 112s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 112s Selecting previously unselected package libgcc-13-dev:arm64. 112s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 112s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 112s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 112s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package gcc-13. 113s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package gcc-aarch64-linux-gnu. 113s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 113s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 113s Selecting previously unselected package gcc. 113s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 113s Unpacking gcc (4:13.2.0-7ubuntu1) ... 113s Selecting previously unselected package libstdc++-13-dev:arm64. 113s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package g++-13-aarch64-linux-gnu. 113s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package g++-13. 113s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 113s Unpacking g++-13 (13.2.0-17ubuntu2) ... 113s Selecting previously unselected package g++-aarch64-linux-gnu. 113s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 113s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 113s Selecting previously unselected package g++. 114s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 114s Unpacking g++ (4:13.2.0-7ubuntu1) ... 114s Selecting previously unselected package build-essential. 114s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 114s Unpacking build-essential (12.10ubuntu1) ... 114s Selecting previously unselected package dctrl-tools. 114s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 114s Unpacking dctrl-tools (2.24-3build2) ... 114s Selecting previously unselected package fonts-dejavu-mono. 114s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 114s Unpacking fonts-dejavu-mono (2.37-8) ... 114s Selecting previously unselected package fonts-dejavu-core. 114s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 114s Unpacking fonts-dejavu-core (2.37-8) ... 114s Selecting previously unselected package fontconfig-config. 114s Preparing to unpack .../037-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 114s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 115s Selecting previously unselected package libfontconfig1:arm64. 115s Preparing to unpack .../038-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 115s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 115s Selecting previously unselected package fontconfig. 115s Preparing to unpack .../039-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 115s Unpacking fontconfig (2.15.0-1ubuntu1) ... 115s Selecting previously unselected package fonts-font-awesome. 115s Preparing to unpack .../040-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 115s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 115s Selecting previously unselected package fonts-glyphicons-halflings. 115s Preparing to unpack .../041-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 115s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 115s Selecting previously unselected package fonts-lmodern. 115s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 115s Unpacking fonts-lmodern (2.005-1) ... 115s Selecting previously unselected package fonts-mathjax. 115s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 115s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 115s Selecting previously unselected package libgfortran5:arm64. 115s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 115s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 115s Selecting previously unselected package libgfortran-13-dev:arm64. 115s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 115s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-13. 115s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 115s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 115s Selecting previously unselected package gfortran-aarch64-linux-gnu. 115s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 115s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 115s Selecting previously unselected package gfortran. 115s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 115s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 116s Selecting previously unselected package icu-devtools. 116s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 116s Unpacking icu-devtools (74.2-1ubuntu1) ... 116s Selecting previously unselected package javascript-common. 116s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 116s Unpacking javascript-common (11+nmu1) ... 116s Selecting previously unselected package libio-string-perl. 116s Preparing to unpack .../052-libio-string-perl_1.08-4_all.deb ... 116s Unpacking libio-string-perl (1.08-4) ... 116s Selecting previously unselected package liblatex-tounicode-perl. 116s Preparing to unpack .../053-liblatex-tounicode-perl_0.54-2_all.deb ... 116s Unpacking liblatex-tounicode-perl (0.54-2) ... 116s Selecting previously unselected package libbibtex-parser-perl. 116s Preparing to unpack .../054-libbibtex-parser-perl_1.04+dfsg-1_all.deb ... 116s Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 116s Selecting previously unselected package libblas3:arm64. 116s Preparing to unpack .../055-libblas3_3.12.0-3_arm64.deb ... 116s Unpacking libblas3:arm64 (3.12.0-3) ... 116s Selecting previously unselected package libblas-dev:arm64. 116s Preparing to unpack .../056-libblas-dev_3.12.0-3_arm64.deb ... 116s Unpacking libblas-dev:arm64 (3.12.0-3) ... 116s Selecting previously unselected package libbz2-dev:arm64. 116s Preparing to unpack .../057-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 116s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 116s Selecting previously unselected package libpixman-1-0:arm64. 116s Preparing to unpack .../058-libpixman-1-0_0.42.2-1_arm64.deb ... 116s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 116s Selecting previously unselected package libxcb-render0:arm64. 116s Preparing to unpack .../059-libxcb-render0_1.15-1_arm64.deb ... 116s Unpacking libxcb-render0:arm64 (1.15-1) ... 116s Selecting previously unselected package libxcb-shm0:arm64. 116s Preparing to unpack .../060-libxcb-shm0_1.15-1_arm64.deb ... 116s Unpacking libxcb-shm0:arm64 (1.15-1) ... 116s Selecting previously unselected package libxrender1:arm64. 116s Preparing to unpack .../061-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 116s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 116s Selecting previously unselected package libcairo2:arm64. 116s Preparing to unpack .../062-libcairo2_1.18.0-1_arm64.deb ... 116s Unpacking libcairo2:arm64 (1.18.0-1) ... 116s Selecting previously unselected package libdatrie1:arm64. 116s Preparing to unpack .../063-libdatrie1_0.2.13-3_arm64.deb ... 116s Unpacking libdatrie1:arm64 (0.2.13-3) ... 116s Selecting previously unselected package libdeflate0:arm64. 116s Preparing to unpack .../064-libdeflate0_1.19-1_arm64.deb ... 116s Unpacking libdeflate0:arm64 (1.19-1) ... 116s Selecting previously unselected package libgraphite2-3:arm64. 116s Preparing to unpack .../065-libgraphite2-3_1.3.14-2_arm64.deb ... 116s Unpacking libgraphite2-3:arm64 (1.3.14-2) ... 116s Selecting previously unselected package libharfbuzz0b:arm64. 116s Preparing to unpack .../066-libharfbuzz0b_8.3.0-2_arm64.deb ... 116s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 116s Selecting previously unselected package x11-common. 116s Preparing to unpack .../067-x11-common_1%3a7.7+23ubuntu2_all.deb ... 116s Unpacking x11-common (1:7.7+23ubuntu2) ... 116s Selecting previously unselected package libice6:arm64. 116s Preparing to unpack .../068-libice6_2%3a1.0.10-1build2_arm64.deb ... 116s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 116s Selecting previously unselected package libicu-dev:arm64. 116s Preparing to unpack .../069-libicu-dev_74.2-1ubuntu1_arm64.deb ... 116s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 116s Selecting previously unselected package libjpeg-turbo8:arm64. 116s Preparing to unpack .../070-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 116s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 117s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 117s Preparing to unpack .../071-libjpeg-turbo8-dev_2.1.5-2ubuntu1_arm64.deb ... 117s Unpacking libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 117s Selecting previously unselected package libjpeg8:arm64. 117s Preparing to unpack .../072-libjpeg8_8c-2ubuntu11_arm64.deb ... 117s Unpacking libjpeg8:arm64 (8c-2ubuntu11) ... 117s Selecting previously unselected package libjpeg8-dev:arm64. 117s Preparing to unpack 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previously unselected package libjs-microplugin.js. 117s Preparing to unpack .../084-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 117s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 117s Selecting previously unselected package libjs-jquery-selectize.js. 117s Preparing to unpack .../085-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 117s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 117s Selecting previously unselected package libjs-jquery-ui. 117s Preparing to unpack .../086-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 117s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 117s Selecting previously unselected package libjs-json. 117s Preparing to unpack .../087-libjs-json_0~20221030+~1.0.8-1_all.deb ... 117s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 117s Selecting previously unselected package libjs-lunr. 117s Preparing to unpack .../088-libjs-lunr_2.3.9~dfsg-2_all.deb ... 117s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 117s Selecting previously unselected package libjs-prettify. 117s Preparing to unpack .../089-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 117s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 117s Selecting previously unselected package libkpathsea6:arm64. 117s Preparing to unpack .../090-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 117s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 118s Selecting previously unselected package liblapack3:arm64. 118s Preparing to unpack .../091-liblapack3_3.12.0-3_arm64.deb ... 118s Unpacking liblapack3:arm64 (3.12.0-3) ... 118s Selecting previously unselected package liblapack-dev:arm64. 118s Preparing to unpack .../092-liblapack-dev_3.12.0-3_arm64.deb ... 118s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 118s Selecting previously unselected package liblerc4:arm64. 118s Preparing to unpack .../093-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 118s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 118s Selecting previously unselected package liblua5.4-0:arm64. 118s Preparing to unpack .../094-liblua5.4-0_5.4.6-3_arm64.deb ... 118s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 118s Selecting previously unselected package libncurses-dev:arm64. 118s Preparing to unpack .../095-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 118s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 118s Selecting previously unselected package libthai-data. 119s Preparing to unpack .../096-libthai-data_0.1.29-2_all.deb ... 119s Unpacking libthai-data (0.1.29-2) ... 119s Selecting previously unselected package libthai0:arm64. 119s Preparing to unpack .../097-libthai0_0.1.29-2_arm64.deb ... 119s Unpacking libthai0:arm64 (0.1.29-2) ... 119s Selecting previously unselected package libpango-1.0-0:arm64. 119s Preparing to unpack .../098-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 119s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 119s Selecting previously unselected package libpangoft2-1.0-0:arm64. 119s Preparing to unpack .../099-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 119s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 119s Selecting previously unselected package libpangocairo-1.0-0:arm64. 119s Preparing to unpack .../100-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 119s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 119s Selecting previously unselected package libpaper1:arm64. 119s Preparing to unpack .../101-libpaper1_1.1.29_arm64.deb ... 119s Unpacking libpaper1:arm64 (1.1.29) ... 119s Selecting previously unselected package libpaper-utils. 119s Preparing to unpack .../102-libpaper-utils_1.1.29_arm64.deb ... 119s Unpacking libpaper-utils (1.1.29) ... 119s Selecting previously unselected package libpcre2-16-0:arm64. 119s Preparing to unpack .../103-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 119s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 119s Selecting previously unselected package libpcre2-32-0:arm64. 119s Preparing to unpack .../104-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 119s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 119s Selecting previously unselected package libpcre2-posix3:arm64. 119s Preparing to unpack .../105-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 119s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 119s Selecting previously unselected package libpcre2-dev:arm64. 119s Preparing to unpack .../106-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 119s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 119s Selecting previously unselected package libpkgconf3:arm64. 119s Preparing to unpack .../107-libpkgconf3_1.8.1-2_arm64.deb ... 119s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 119s Selecting previously unselected package zlib1g-dev:arm64. 119s Preparing to unpack .../108-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 119s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 119s Selecting previously unselected package libpng-dev:arm64. 119s Preparing to unpack .../109-libpng-dev_1.6.43-3_arm64.deb ... 119s Unpacking libpng-dev:arm64 (1.6.43-3) ... 119s Selecting previously unselected package libpotrace0:arm64. 119s Preparing to unpack .../110-libpotrace0_1.16-2_arm64.deb ... 119s Unpacking libpotrace0:arm64 (1.16-2) ... 119s Selecting previously unselected package libptexenc1:arm64. 119s Preparing to unpack .../111-libptexenc1_2023.20230311.66589-9_arm64.deb ... 119s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 119s Selecting previously unselected package libreadline-dev:arm64. 119s Preparing to unpack .../112-libreadline-dev_8.2-3.1_arm64.deb ... 119s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 119s Selecting previously unselected package libsharpyuv0:arm64. 120s Preparing to unpack .../113-libsharpyuv0_1.3.2-0.4_arm64.deb ... 120s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 120s Selecting previously unselected package libsm6:arm64. 120s Preparing to unpack .../114-libsm6_2%3a1.2.3-1build2_arm64.deb ... 120s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 120s Selecting previously unselected package libsynctex2:arm64. 120s Preparing to unpack .../115-libsynctex2_2023.20230311.66589-9_arm64.deb ... 120s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 120s Selecting previously unselected package libtcl8.6:arm64. 120s Preparing to unpack .../116-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 120s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 120s Selecting previously unselected package libteckit0:arm64. 120s Preparing to unpack .../117-libteckit0_2.5.12+ds1-1_arm64.deb ... 120s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 120s Selecting previously unselected package libtexlua53-5:arm64. 120s Preparing to unpack .../118-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 120s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 120s Selecting previously unselected package libjbig0:arm64. 120s Preparing to unpack .../119-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 120s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 120s Selecting previously unselected package libwebp7:arm64. 120s Preparing to unpack .../120-libwebp7_1.3.2-0.4_arm64.deb ... 120s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 120s Selecting previously unselected package libtiff6:arm64. 120s Preparing to unpack .../121-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 120s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 120s Selecting previously unselected package libxft2:arm64. 120s Preparing to unpack .../122-libxft2_2.3.6-1_arm64.deb ... 120s Unpacking libxft2:arm64 (2.3.6-1) ... 120s Selecting previously unselected package libxss1:arm64. 120s Preparing to unpack .../123-libxss1_1%3a1.2.3-1build2_arm64.deb ... 120s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 120s Selecting previously unselected package libtk8.6:arm64. 120s Preparing to unpack .../124-libtk8.6_8.6.13-2_arm64.deb ... 120s Unpacking libtk8.6:arm64 (8.6.13-2) ... 120s Selecting previously unselected package libxt6t64:arm64. 120s Preparing to unpack .../125-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 120s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 120s Selecting previously unselected package libxmu6:arm64. 120s Preparing to unpack .../126-libxmu6_2%3a1.1.3-3_arm64.deb ... 120s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 120s Selecting previously unselected package libxpm4:arm64. 120s Preparing to unpack .../127-libxpm4_1%3a3.5.17-1_arm64.deb ... 120s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 120s Selecting previously unselected package libxaw7:arm64. 120s Preparing to unpack .../128-libxaw7_2%3a1.0.14-1_arm64.deb ... 120s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 120s Selecting previously unselected package libxi6:arm64. 120s Preparing to unpack .../129-libxi6_2%3a1.8.1-1_arm64.deb ... 120s Unpacking libxi6:arm64 (2:1.8.1-1) ... 120s Selecting previously unselected package libzzip-0-13:arm64. 120s Preparing to unpack .../130-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 120s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 120s Selecting previously unselected package zip. 120s Preparing to unpack .../131-zip_3.0-13_arm64.deb ... 120s Unpacking zip (3.0-13) ... 120s Selecting previously unselected package unzip. 120s Preparing to unpack .../132-unzip_6.0-28ubuntu3_arm64.deb ... 120s Unpacking unzip (6.0-28ubuntu3) ... 120s Selecting previously unselected package xdg-utils. 120s Preparing to unpack .../133-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 120s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 120s Selecting previously unselected package r-base-core. 120s Preparing to unpack .../134-r-base-core_4.3.3-2build1_arm64.deb ... 121s Unpacking r-base-core (4.3.3-2build1) ... 121s Selecting previously unselected package r-cran-littler. 121s Preparing to unpack .../135-r-cran-littler_0.3.19-1_arm64.deb ... 121s Unpacking r-cran-littler (0.3.19-1) ... 121s Selecting previously unselected package littler. 121s Preparing to unpack .../136-littler_0.3.19-1_all.deb ... 121s Unpacking littler (0.3.19-1) ... 121s Selecting previously unselected package node-bootstrap-sass. 121s Preparing to unpack .../137-node-bootstrap-sass_3.4.3-2_all.deb ... 121s Unpacking node-bootstrap-sass (3.4.3-2) ... 121s Selecting previously unselected package node-html5shiv. 121s Preparing to unpack .../138-node-html5shiv_3.7.3+dfsg-5_all.deb ... 121s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 121s Selecting previously unselected package node-normalize.css. 121s Preparing to unpack .../139-node-normalize.css_8.0.1-5_all.deb ... 121s Unpacking node-normalize.css (8.0.1-5) ... 121s Selecting previously unselected package pandoc-data. 121s Preparing to unpack .../140-pandoc-data_3.1.3-1_all.deb ... 121s Unpacking pandoc-data (3.1.3-1) ... 122s Selecting previously unselected package pandoc. 122s Preparing to unpack .../141-pandoc_3.1.3+ds-2_arm64.deb ... 122s Unpacking pandoc (3.1.3+ds-2) ... 122s Selecting previously unselected package pkgconf-bin. 122s Preparing to unpack .../142-pkgconf-bin_1.8.1-2_arm64.deb ... 122s Unpacking pkgconf-bin (1.8.1-2) ... 123s Selecting previously unselected package pkgconf:arm64. 123s Preparing to unpack .../143-pkgconf_1.8.1-2_arm64.deb ... 123s Unpacking pkgconf:arm64 (1.8.1-2) ... 123s Selecting previously unselected package pkg-config:arm64. 123s Preparing to unpack .../144-pkg-config_1.8.1-2_arm64.deb ... 123s Unpacking pkg-config:arm64 (1.8.1-2) ... 123s Selecting previously unselected package liblzma-dev:arm64. 123s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 123s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 123s Selecting previously unselected package r-base-dev. 123s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 123s Unpacking r-base-dev (4.3.3-2build1) ... 123s Selecting previously unselected package pkg-r-autopkgtest. 123s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 123s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 123s Selecting previously unselected package r-bioc-biocgenerics. 123s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 123s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 123s Selecting previously unselected package r-bioc-biobase. 123s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 123s Unpacking r-bioc-biobase (2.62.0-1) ... 123s Selecting previously unselected package r-bioc-s4vectors. 123s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 123s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 123s Selecting previously unselected package r-bioc-iranges. 123s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 123s Unpacking r-bioc-iranges (2.36.0-1) ... 123s Selecting previously unselected package r-cran-dbi. 123s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 123s Unpacking r-cran-dbi (1.2.2-1) ... 123s Selecting previously unselected package r-cran-bit. 123s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 123s Unpacking r-cran-bit (4.0.5-1) ... 123s Selecting previously unselected package r-cran-bit64. 123s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 123s Unpacking r-cran-bit64 (4.0.5-1) ... 123s Selecting previously unselected package r-cran-rlang. 123s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 123s Unpacking r-cran-rlang (1.1.3-1) ... 123s Selecting previously unselected package r-cran-cli. 124s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 124s Unpacking r-cran-cli (3.6.2-1) ... 124s Selecting previously unselected package r-cran-glue. 124s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 124s Unpacking r-cran-glue (1.7.0-1) ... 124s Selecting previously unselected package r-cran-lifecycle. 124s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 124s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 124s Selecting previously unselected package r-cran-vctrs. 124s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 124s Unpacking r-cran-vctrs (0.6.5-1) ... 124s Selecting previously unselected package r-cran-blob. 124s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 124s Unpacking r-cran-blob (1.2.4-1) ... 124s Selecting previously unselected package r-cran-fastmap. 124s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 124s Unpacking r-cran-fastmap (1.1.1-1) ... 124s Selecting previously unselected package r-cran-cachem. 124s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 124s Unpacking r-cran-cachem (1.0.8-1) ... 124s Selecting previously unselected package r-cran-memoise. 124s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 124s Unpacking r-cran-memoise (2.0.1-1) ... 124s Selecting previously unselected package r-cran-pkgconfig. 124s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 124s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 124s Selecting previously unselected package r-cran-plogr. 124s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 124s Unpacking r-cran-plogr (0.2.0-3build1) ... 124s Selecting previously unselected package r-cran-cpp11. 124s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 124s Unpacking r-cran-cpp11 (0.4.7-1) ... 124s Selecting previously unselected package r-cran-rsqlite. 124s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 124s Unpacking r-cran-rsqlite (2.3.4-1) ... 124s Selecting previously unselected package r-cran-curl. 124s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 124s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 124s Selecting previously unselected package r-cran-jsonlite. 124s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 124s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 124s Selecting previously unselected package r-cran-mime. 124s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 124s Unpacking r-cran-mime (0.12-1) ... 124s Selecting previously unselected package r-cran-sys. 124s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 124s Unpacking r-cran-sys (3.4.2-1) ... 124s Selecting previously unselected package r-cran-askpass. 124s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 124s Unpacking r-cran-askpass (1.2.0-1) ... 124s Selecting previously unselected package r-cran-openssl. 124s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 124s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 124s Selecting previously unselected package r-cran-r6. 124s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 124s Unpacking r-cran-r6 (2.5.1-1) ... 124s Selecting previously unselected package r-cran-httr. 124s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 124s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 125s Selecting previously unselected package r-cran-png. 125s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 125s Unpacking r-cran-png (0.1-8-1) ... 125s Selecting previously unselected package r-bioc-zlibbioc. 125s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 125s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 125s Selecting previously unselected package r-bioc-xvector. 125s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 125s Unpacking r-bioc-xvector (0.42.0-1) ... 125s Selecting previously unselected package r-cran-bitops. 125s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 125s Unpacking r-cran-bitops (1.0-7-1) ... 125s Selecting previously unselected package r-cran-rcurl. 125s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 125s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 125s Selecting previously unselected package r-bioc-genomeinfodbdata. 125s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 125s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 125s Selecting previously unselected package r-bioc-genomeinfodb. 125s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 125s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 125s Selecting previously unselected package r-cran-crayon. 125s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 125s Unpacking r-cran-crayon (1.5.2-1) ... 125s Selecting previously unselected package r-bioc-biostrings. 125s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 125s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 125s Selecting previously unselected package r-bioc-keggrest. 125s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 125s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 125s Selecting previously unselected package r-bioc-annotationdbi. 125s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 125s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 125s Selecting previously unselected package r-cran-xml. 125s Preparing to unpack .../187-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 125s Unpacking r-cran-xml (3.99-0.16.1-1) ... 125s Selecting previously unselected package r-cran-xtable. 125s Preparing to unpack .../188-r-cran-xtable_1%3a1.8-4-2_all.deb ... 125s Unpacking r-cran-xtable (1:1.8-4-2) ... 125s Selecting previously unselected package r-bioc-annotate. 125s Preparing to unpack .../189-r-bioc-annotate_1.80.0+dfsg-1_all.deb ... 125s Unpacking r-bioc-annotate (1.80.0+dfsg-1) ... 125s Selecting previously unselected package r-cran-base64enc. 125s Preparing to unpack .../190-r-cran-base64enc_0.1-3-3_arm64.deb ... 125s Unpacking r-cran-base64enc (0.1-3-3) ... 125s Selecting previously unselected package r-cran-digest. 125s Preparing to unpack .../191-r-cran-digest_0.6.34-1_arm64.deb ... 125s Unpacking r-cran-digest (0.6.34-1) ... 125s Selecting previously unselected package r-cran-ellipsis. 126s Preparing to unpack .../192-r-cran-ellipsis_0.3.2-2_arm64.deb ... 126s Unpacking r-cran-ellipsis (0.3.2-2) ... 126s Selecting previously unselected package r-cran-htmltools. 126s Preparing to unpack .../193-r-cran-htmltools_0.5.7-1_arm64.deb ... 126s Unpacking r-cran-htmltools (0.5.7-1) ... 126s Selecting previously unselected package r-cran-evaluate. 126s Preparing to unpack .../194-r-cran-evaluate_0.23-1_all.deb ... 126s Unpacking r-cran-evaluate (0.23-1) ... 126s Selecting previously unselected package r-cran-xfun. 126s Preparing to unpack .../195-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 126s Unpacking r-cran-xfun (0.41+dfsg-1) ... 126s Selecting previously unselected package r-cran-highr. 126s Preparing to unpack .../196-r-cran-highr_0.10+dfsg-1_all.deb ... 126s Unpacking r-cran-highr (0.10+dfsg-1) ... 126s Selecting previously unselected package r-cran-yaml. 126s Preparing to unpack .../197-r-cran-yaml_2.3.8-1_arm64.deb ... 126s Unpacking r-cran-yaml (2.3.8-1) ... 126s Selecting previously unselected package libjs-mathjax. 126s Preparing to unpack .../198-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 126s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 127s Selecting previously unselected package r-cran-knitr. 127s Preparing to unpack .../199-r-cran-knitr_1.45+dfsg-1_all.deb ... 127s Unpacking r-cran-knitr (1.45+dfsg-1) ... 127s Selecting previously unselected package r-cran-jquerylib. 127s Preparing to unpack .../200-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 127s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 127s Selecting previously unselected package r-cran-fs. 127s Preparing to unpack .../201-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 127s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 127s Selecting previously unselected package r-cran-rappdirs. 127s Preparing to unpack .../202-r-cran-rappdirs_0.3.3-1_arm64.deb ... 127s Unpacking r-cran-rappdirs (0.3.3-1) ... 127s Selecting previously unselected package r-cran-sass. 127s Preparing to unpack .../203-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 127s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 127s Selecting previously unselected package r-cran-bslib. 127s Preparing to unpack .../204-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 127s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 127s Selecting previously unselected package r-cran-fontawesome. 127s Preparing to unpack .../205-r-cran-fontawesome_0.5.2-1_all.deb ... 127s Unpacking r-cran-fontawesome (0.5.2-1) ... 127s Selecting previously unselected package r-cran-magrittr. 127s Preparing to unpack .../206-r-cran-magrittr_2.0.3-1_arm64.deb ... 127s Unpacking r-cran-magrittr (2.0.3-1) ... 127s Selecting previously unselected package r-cran-stringi. 127s Preparing to unpack .../207-r-cran-stringi_1.8.3-1_arm64.deb ... 127s Unpacking r-cran-stringi (1.8.3-1) ... 127s Selecting previously unselected package r-cran-stringr. 127s Preparing to unpack .../208-r-cran-stringr_1.5.1-1_all.deb ... 127s Unpacking r-cran-stringr (1.5.1-1) ... 127s Selecting previously unselected package r-cran-tinytex. 127s Preparing to unpack .../209-r-cran-tinytex_0.49-1_all.deb ... 127s Unpacking r-cran-tinytex (0.49-1) ... 127s Selecting previously unselected package libjs-modernizr. 127s Preparing to unpack .../210-libjs-modernizr_2.6.2+ds1-5_all.deb ... 127s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 127s Selecting previously unselected package r-cran-pkgkitten. 127s Preparing to unpack .../211-r-cran-pkgkitten_0.2.3-1_all.deb ... 127s Unpacking r-cran-pkgkitten (0.2.3-1) ... 127s Selecting previously unselected package r-cran-rcpp. 127s Preparing to unpack .../212-r-cran-rcpp_1.0.12-1_arm64.deb ... 127s Unpacking r-cran-rcpp (1.0.12-1) ... 127s Selecting previously unselected package r-cran-later. 127s Preparing to unpack .../213-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 127s Unpacking r-cran-later (1.3.2+dfsg-1) ... 127s Selecting previously unselected package r-cran-promises. 127s Preparing to unpack .../214-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 127s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 127s Selecting previously unselected package r-cran-httpuv. 127s Preparing to unpack .../215-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 127s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 127s Selecting previously unselected package r-cran-sourcetools. 128s Preparing to unpack .../216-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 128s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 128s Selecting previously unselected package r-cran-withr. 128s Preparing to unpack .../217-r-cran-withr_2.5.0-1_all.deb ... 128s Unpacking r-cran-withr (2.5.0-1) ... 128s Selecting previously unselected package r-cran-commonmark. 128s Preparing to unpack .../218-r-cran-commonmark_1.9.1-1_arm64.deb ... 128s Unpacking r-cran-commonmark (1.9.1-1) ... 128s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 128s Preparing to unpack .../219-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 128s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 128s Selecting previously unselected package r-cran-shiny. 128s Preparing to unpack .../220-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 128s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 128s Selecting previously unselected package r-cran-rmarkdown. 128s Preparing to unpack .../221-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 128s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 128s Selecting previously unselected package r-cran-bookdown. 128s Preparing to unpack .../222-r-cran-bookdown_0.37+dfsg-1_all.deb ... 128s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 128s Selecting previously unselected package r-cran-biocmanager. 128s Preparing to unpack .../223-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 128s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 128s Selecting previously unselected package tex-common. 128s Preparing to unpack .../224-tex-common_6.18_all.deb ... 128s Unpacking tex-common (6.18) ... 128s Selecting previously unselected package t1utils. 128s Preparing to unpack .../225-t1utils_1.41-4build2_arm64.deb ... 128s Unpacking t1utils (1.41-4build2) ... 128s Selecting previously unselected package texlive-binaries. 128s Preparing to unpack .../226-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 128s Unpacking texlive-binaries (2023.20230311.66589-9) ... 128s Selecting previously unselected package texlive-base. 128s Preparing to unpack .../227-texlive-base_2023.20240207-1_all.deb ... 128s Unpacking texlive-base (2023.20240207-1) ... 130s Selecting previously unselected package texlive-latex-base. 130s Preparing to unpack .../228-texlive-latex-base_2023.20240207-1_all.deb ... 130s Unpacking texlive-latex-base (2023.20240207-1) ... 130s Selecting previously unselected package texlive-bibtex-extra. 130s Preparing to unpack .../229-texlive-bibtex-extra_2023.20240207-1_all.deb ... 130s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 133s Selecting previously unselected package r-bioc-biocstyle. 133s Preparing to unpack .../230-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 133s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 133s Selecting previously unselected package r-bioc-go.db. 133s Preparing to unpack .../231-r-bioc-go.db_3.18.0-1_all.deb ... 133s Unpacking r-bioc-go.db (3.18.0-1) ... 133s Selecting previously unselected package r-bioc-graph. 133s Preparing to unpack .../232-r-bioc-graph_1.80.0-1_arm64.deb ... 133s Unpacking r-bioc-graph (1.80.0-1) ... 133s Selecting previously unselected package r-bioc-gseabase. 133s Preparing to unpack .../233-r-bioc-gseabase_1.64.0+ds-1_all.deb ... 133s Unpacking r-bioc-gseabase (1.64.0+ds-1) ... 133s Selecting previously unselected package r-bioc-org.hs.eg.db. 133s Preparing to unpack .../234-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 133s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 135s Selecting previously unselected package r-cran-brio. 135s Preparing to unpack .../235-r-cran-brio_1.1.4-1_arm64.deb ... 135s Unpacking r-cran-brio (1.1.4-1) ... 135s Selecting previously unselected package r-cran-ps. 135s Preparing to unpack .../236-r-cran-ps_1.7.6-1_arm64.deb ... 135s Unpacking r-cran-ps (1.7.6-1) ... 135s Selecting previously unselected package r-cran-processx. 135s Preparing to unpack .../237-r-cran-processx_3.8.3-1_arm64.deb ... 135s Unpacking r-cran-processx (3.8.3-1) ... 135s Selecting previously unselected package r-cran-callr. 135s Preparing to unpack .../238-r-cran-callr_3.7.3-2_all.deb ... 135s Unpacking r-cran-callr (3.7.3-2) ... 135s Selecting previously unselected package r-cran-desc. 135s Preparing to unpack .../239-r-cran-desc_1.4.3-1_all.deb ... 135s Unpacking r-cran-desc (1.4.3-1) ... 135s Selecting previously unselected package r-cran-diffobj. 136s Preparing to unpack .../240-r-cran-diffobj_0.3.5-1_arm64.deb ... 136s Unpacking r-cran-diffobj (0.3.5-1) ... 136s Selecting previously unselected package r-cran-fansi. 136s Preparing to unpack .../241-r-cran-fansi_1.0.5-1_arm64.deb ... 136s Unpacking r-cran-fansi (1.0.5-1) ... 136s Selecting previously unselected package r-cran-utf8. 136s Preparing to unpack .../242-r-cran-utf8_1.2.4-1_arm64.deb ... 136s Unpacking r-cran-utf8 (1.2.4-1) ... 136s Selecting previously unselected package r-cran-pillar. 136s Preparing to unpack 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Selecting previously unselected package r-cran-rematch2. 136s Preparing to unpack .../249-r-cran-rematch2_2.1.2-2build1_all.deb ... 136s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 136s Selecting previously unselected package r-cran-runit. 136s Preparing to unpack .../250-r-cran-runit_0.4.32-3_all.deb ... 136s Unpacking r-cran-runit (0.4.32-3) ... 136s Selecting previously unselected package r-cran-waldo. 136s Preparing to unpack .../251-r-cran-waldo_0.5.2-1build1_all.deb ... 136s Unpacking r-cran-waldo (0.5.2-1build1) ... 136s Selecting previously unselected package r-cran-testthat. 136s Preparing to unpack .../252-r-cran-testthat_3.2.1-1_arm64.deb ... 136s Unpacking r-cran-testthat (3.2.1-1) ... 136s Selecting previously unselected package autopkgtest-satdep. 136s Preparing to unpack .../253-1-autopkgtest-satdep.deb ... 136s Unpacking autopkgtest-satdep (0) ... 137s Setting up libjs-json (0~20221030+~1.0.8-1) ... 137s Setting up javascript-common (11+nmu1) ... 137s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 137s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 137s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 137s Setting up libpaper1:arm64 (1.1.29) ... 137s 137s Creating config file /etc/papersize with new version 137s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 137s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 137s Setting up libxpm4:arm64 (1:3.5.17-1) ... 137s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 137s Setting up libxi6:arm64 (2:1.8.1-1) ... 137s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 137s Setting up libdatrie1:arm64 (0.2.13-3) ... 137s Setting up libjs-popper.js (1.16.1+ds-6) ... 137s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 137s Setting up libxcb-render0:arm64 (1.15-1) ... 137s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 137s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 137s Setting up libjs-lunr (2.3.9~dfsg-2) ... 137s Setting up unzip (6.0-28ubuntu3) ... 137s Setting up liblatex-tounicode-perl 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Setting up libblas3:arm64 (3.12.0-3) ... 138s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode 138s Setting up libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 138s Setting up libpkgconf3:arm64 (1.8.1-2) ... 138s Setting up rpcsvc-proto (1.4.2-0ubuntu6) ... 138s Setting up libteckit0:arm64 (2.5.12+ds1-1) ... 138s Setting up t1utils (1.41-4build2) ... 138s Setting up libtexlua53-5:arm64 (2023.20230311.66589-9) ... 138s Setting up libjs-d3 (3.5.17-4) ... 138s Setting up fonts-dejavu-mono (2.37-8) ... 138s Setting up libpng16-16t64:arm64 (1.6.43-3) ... 138s Setting up libmpc3:arm64 (1.3.1-1) ... 138s Setting up libatomic1:arm64 (14-20240303-1ubuntu1) ... 138s Setting up libtcl8.6:arm64 (8.6.13+dfsg-2) ... 138s Setting up icu-devtools (74.2-1ubuntu1) ... 138s Setting up fonts-dejavu-core (2.37-8) ... 138s Setting up pkgconf-bin (1.8.1-2) ... 138s Setting up libjpeg-turbo8:arm64 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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode 141s update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode 141s Setting up g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Setting up gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 141s Setting up r-cran-commonmark (1.9.1-1) ... 141s Setting up r-cran-r6 (2.5.1-1) ... 141s Setting up r-cran-pkgkitten (0.2.3-1) ... 141s Setting up texlive-base (2023.20240207-1) ... 142s tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps 142s tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg 142s tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper 142s tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex 143s Setting up r-cran-magrittr (2.0.3-1) ... 143s Setting up r-cran-rappdirs (0.3.3-1) ... 143s Setting up r-bioc-genomeinfodbdata (1.2.11-2) ... 143s Setting up r-cran-littler (0.3.19-1) ... 143s Setting up r-cran-fs (1.6.3+dfsg-1) ... 143s Setting up r-cran-rcpp (1.0.12-1) ... 143s Setting up r-cran-curl (5.2.0+dfsg-1) ... 143s Setting up r-cran-brio (1.1.4-1) ... 143s Setting up r-cran-diffobj (0.3.5-1) ... 143s Setting up r-bioc-biocgenerics (0.48.1-2) ... 143s Setting up r-cran-rlang (1.1.3-1) ... 143s Setting up littler (0.3.19-1) ... 143s Setting up r-cran-xfun (0.41+dfsg-1) ... 143s Setting up r-cran-sys (3.4.2-1) ... 143s Setting up r-cran-plogr (0.2.0-3build1) ... 143s Setting up r-cran-withr (2.5.0-1) ... 143s Setting up r-cran-processx (3.8.3-1) ... 143s Setting up r-cran-mime (0.12-1) ... 143s Setting up r-cran-praise (1.0.0-4build1) ... 143s Setting up r-cran-base64enc (0.1-3-3) ... 143s Setting up r-cran-digest (0.6.34-1) ... 143s Setting up r-cran-yaml (2.3.8-1) ... 143s Setting up r-cran-evaluate (0.23-1) ... 143s Setting up r-cran-dbi (1.2.2-1) ... 143s Setting up r-cran-highr (0.10+dfsg-1) ... 143s Setting up r-cran-fansi (1.0.5-1) ... 143s Setting up r-cran-glue (1.7.0-1) ... 143s Setting up r-cran-bit (4.0.5-1) ... 143s Setting up r-cran-xtable (1:1.8-4-2) ... 143s Setting up r-cran-cli (3.6.2-1) ... 143s Setting up gfortran (4:13.2.0-7ubuntu1) ... 143s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode 143s update-alternatives: warning: skip creation of /usr/share/man/man1/f95.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f95) doesn't exist 143s update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode 143s update-alternatives: warning: skip creation of /usr/share/man/man1/f77.1.gz because associated file /usr/share/man/man1/gfortran.1.gz (of link group f77) doesn't exist 143s Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... 143s Setting up r-cran-bitops (1.0-7-1) ... 143s Setting up r-cran-rprojroot (2.0.4-1) ... 143s Setting up r-cran-bit64 (4.0.5-1) ... 143s Setting up r-cran-biocmanager (1.30.22+dfsg-2) ... 143s Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ... 143s Setting up r-cran-askpass (1.2.0-1) ... 143s Setting up r-cran-fastmap (1.1.1-1) ... 143s Setting up r-cran-png (0.1-8-1) ... 143s Setting up r-bioc-biobase (2.62.0-1) ... 143s Setting up r-cran-jsonlite (1.8.8+dfsg-1) ... 143s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 143s Setting up r-cran-utf8 (1.2.4-1) ... 143s Setting up r-cran-stringi (1.8.3-1) ... 143s Setting up texlive-latex-base (2023.20240207-1) ... 143s Setting up r-cran-cpp11 (0.4.7-1) ... 143s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 143s Setting up r-cran-runit (0.4.32-3) ... 143s Setting up r-cran-later (1.3.2+dfsg-1) ... 143s Setting up r-cran-tinytex (0.49-1) ... 143s Setting up r-cran-knitr (1.45+dfsg-1) ... 143s Setting up g++ (4:13.2.0-7ubuntu1) ... 143s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 143s Setting up r-cran-cachem (1.0.8-1) ... 143s Setting up build-essential (12.10ubuntu1) ... 143s Setting up r-bioc-iranges (2.36.0-1) ... 143s Setting up r-cran-rcurl (1.98-1.14+dfsg-1) ... 143s Setting up r-cran-vctrs (0.6.5-1) ... 143s Setting up r-bioc-graph (1.80.0-1) ... 143s Setting up r-cran-pillar (1.9.0+dfsg-1) ... 143s Setting up r-cran-ellipsis (0.3.2-2) ... 143s Setting up r-cran-openssl (2.1.1+dfsg-2) ... 143s Setting up r-base-dev (4.3.3-2build1) ... 143s Setting up r-cran-stringr (1.5.1-1) ... 143s Setting up r-cran-callr (3.7.3-2) ... 143s Setting up r-cran-desc (1.4.3-1) ... 143s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 143s Setting up texlive-bibtex-extra (2023.20240207-1) ... 143s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 143s Setting up r-cran-httr (1.4.7+dfsg-1) ... 143s Setting up r-cran-memoise (2.0.1-1) ... 143s Setting up r-cran-promises (1.2.1+dfsg-1) ... 143s Setting up r-cran-blob (1.2.4-1) ... 143s Setting up r-cran-htmltools (0.5.7-1) ... 143s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 143s Setting up r-bioc-xvector (0.42.0-1) ... 143s Setting up r-cran-pkgbuild (1.4.3-1) ... 143s Setting up r-cran-sass (0.4.8+dfsg-1) ... 143s Setting up r-cran-rsqlite (2.3.4-1) ... 143s Setting up r-cran-pkgload (1.3.4-1) ... 143s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 143s Setting up r-cran-rematch2 (2.1.2-2build1) ... 143s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 143s Setting up r-cran-fontawesome (0.5.2-1) ... 143s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 143s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 143s Setting up r-cran-waldo (0.5.2-1build1) ... 143s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 143s Setting up r-bioc-annotationdbi (1.64.1-1) ... 143s Setting up r-bioc-go.db (3.18.0-1) ... 143s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 143s Setting up r-cran-testthat (3.2.1-1) ... 143s Setting up r-bioc-annotate (1.80.0+dfsg-1) ... 143s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 143s Setting up r-cran-bookdown (0.37+dfsg-1) ... 143s Setting up r-bioc-org.hs.eg.db (3.18.0-1) ... 143s Setting up r-bioc-gseabase (1.64.0+ds-1) ... 143s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 143s Setting up autopkgtest-satdep (0) ... 143s Processing triggers for man-db (2.12.0-3) ... 144s Processing triggers for install-info (7.1-3) ... 144s Processing triggers for libc-bin (2.39-0ubuntu2) ... 144s Processing triggers for tex-common (6.18) ... 144s Running updmap-sys. This may take some time... done. 144s Running mktexlsr /var/lib/texmf ... done. 144s Building format(s) --all. 182s This may take some time... done. 194s (Reading database ... 105856 files and directories currently installed.) 194s Removing autopkgtest-satdep (0) ... 194s autopkgtest [17:37:11]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 194s autopkgtest [17:37:11]: test pkg-r-autopkgtest: [----------------------- 195s Test: Try to load the R library GSEABase 195s 195s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 195s Copyright (C) 2024 The R Foundation for Statistical Computing 195s Platform: aarch64-unknown-linux-gnu (64-bit) 195s 195s R is free software and comes with ABSOLUTELY NO WARRANTY. 195s You are welcome to redistribute it under certain conditions. 195s Type 'license()' or 'licence()' for distribution details. 195s 195s R is a collaborative project with many contributors. 195s Type 'contributors()' for more information and 195s 'citation()' on how to cite R or R packages in publications. 195s 195s Type 'demo()' for some demos, 'help()' for on-line help, or 195s 'help.start()' for an HTML browser interface to help. 195s Type 'q()' to quit R. 195s 195s > library('GSEABase') 195s Loading required package: BiocGenerics 195s 195s Attaching package: ‘BiocGenerics’ 195s 195s The following objects are masked from ‘package:stats’: 195s 195s IQR, mad, sd, var, xtabs 195s 195s The following objects are masked from ‘package:base’: 195s 195s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 195s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 195s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 195s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 195s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 195s table, tapply, union, unique, unsplit, which.max, which.min 195s 195s Loading required package: Biobase 195s Welcome to Bioconductor 195s 195s Vignettes contain introductory material; view with 195s 'browseVignettes()'. To cite Bioconductor, see 195s 'citation("Biobase")', and for packages 'citation("pkgname")'. 195s 195s Loading required package: annotate 195s Loading required package: AnnotationDbi 195s Loading required package: stats4 195s Loading required package: IRanges 195s Loading required package: S4Vectors 196s 196s Attaching package: ‘S4Vectors’ 196s 196s The following object is masked from ‘package:utils’: 196s 196s findMatches 196s 196s The following objects are masked from ‘package:base’: 196s 196s expand.grid, I, unname 196s 198s Loading required package: XML 199s Loading required package: graph 199s 199s Attaching package: ‘graph’ 199s 199s The following object is masked from ‘package:XML’: 199s 199s addNode 199s 199s > 199s > 199s Other tests are currently unsupported! 199s They will be progressively added. 200s autopkgtest [17:37:17]: test pkg-r-autopkgtest: -----------------------] 200s pkg-r-autopkgtest PASS 200s autopkgtest [17:37:17]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 200s autopkgtest [17:37:17]: @@@@@@@@@@@@@@@@@@@@ summary 200s pkg-r-autopkgtest PASS 218s Creating nova instance adt-noble-arm64-r-bioc-gseabase-20240316-173357-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...