0s autopkgtest [17:33:39]: starting date and time: 2024-03-16 17:33:39+0000 0s autopkgtest [17:33:39]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:33:39]: host juju-7f2275-prod-proposed-migration-environment-2; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.hvze8dy0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-grohmm --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-2@bos03-arm64-7.secgroup --name adt-noble-arm64-r-bioc-grohmm-20240316-173339-juju-7f2275-prod-proposed-migration-environment-2 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-2 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 68s autopkgtest [17:34:47]: testbed dpkg architecture: arm64 68s autopkgtest [17:34:47]: testbed apt version: 2.7.12 68s autopkgtest [17:34:47]: @@@@@@@@@@@@@@@@@@@@ test bed setup 69s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 69s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 69s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 69s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 70s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 70s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 70s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 70s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 70s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 70s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 70s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 70s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 70s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 72s Fetched 9060 kB in 2s (5177 kB/s) 72s Reading package lists... 75s Reading package lists... 76s Building dependency tree... 76s Reading state information... 76s Calculating upgrade... 77s The following packages will be REMOVED: 77s libglib2.0-0 libssl3 77s The following NEW packages will be installed: 77s libglib2.0-0t64 libssl3t64 xdg-user-dirs 77s The following packages have been kept back: 77s curl 77s The following packages will be upgraded: 77s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 77s ubuntu-minimal ubuntu-standard 78s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 78s Need to get 4613 kB of archives. 78s After this operation, 211 kB of additional disk space will be used. 78s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 78s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 78s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 78s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 78s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 78s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 78s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 78s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 78s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 78s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 79s Fetched 4613 kB in 1s (6558 kB/s) 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 79s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 79s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 79s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 79s udisks2 depends on libglib2.0-0 (>= 2.77.0). 79s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 79s python3-gi depends on libglib2.0-0 (>= 2.77.0). 79s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 79s netplan.io depends on libglib2.0-0 (>= 2.70.0). 79s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 79s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 79s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 79s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 79s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 79s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 79s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 79s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 79s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 79s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 79s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 79s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 79s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 79s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 79s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 79s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 79s fwupd depends on libglib2.0-0 (>= 2.79.0). 79s bolt depends on libglib2.0-0 (>= 2.56.0). 79s 79s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 79s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 79s Selecting previously unselected package libglib2.0-0t64:arm64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 80s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 80s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 80s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 80s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 80s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 80s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 80s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 80s wget depends on libssl3 (>= 3.0.0). 80s u-boot-tools depends on libssl3 (>= 3.0.0). 80s tnftp depends on libssl3 (>= 3.0.0). 80s tcpdump depends on libssl3 (>= 3.0.0). 80s systemd-resolved depends on libssl3 (>= 3.0.0). 80s systemd depends on libssl3 (>= 3.0.0). 80s sudo depends on libssl3 (>= 3.0.0). 80s sbsigntool depends on libssl3 (>= 3.0.0). 80s rsync depends on libssl3 (>= 3.0.0). 80s python3-cryptography depends on libssl3 (>= 3.0.0). 80s openssh-server depends on libssl3 (>= 3.0.10). 80s openssh-client depends on libssl3 (>= 3.0.10). 80s mtd-utils depends on libssl3 (>= 3.0.0). 80s mokutil depends on libssl3 (>= 3.0.0). 80s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 80s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 80s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 80s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 80s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 80s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 80s libnvme1 depends on libssl3 (>= 3.0.0). 80s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 80s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 80s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 80s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 80s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 80s kmod depends on libssl3 (>= 3.0.0). 80s dhcpcd-base depends on libssl3 (>= 3.0.0). 80s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 80s 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 80s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 80s Selecting previously unselected package libssl3t64:arm64. 80s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 80s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 80s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 80s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 80s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 80s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 80s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 80s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 80s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 80s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 80s Unpacking ubuntu-minimal (1.536) over (1.535) ... 80s Selecting previously unselected package xdg-user-dirs. 80s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 80s Unpacking xdg-user-dirs (0.18-1) ... 80s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 80s Unpacking ubuntu-standard (1.536) over (1.535) ... 80s Setting up ubuntu-minimal (1.536) ... 80s Setting up xdg-user-dirs (0.18-1) ... 80s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 80s Setting up libtirpc-common (1.3.4+ds-1.1) ... 80s Setting up ubuntu-standard (1.536) ... 80s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 81s No schema files found: doing nothing. 81s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 81s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 81s Setting up openssl (3.0.13-0ubuntu1) ... 81s Setting up readline-common (8.2-3.1) ... 81s Processing triggers for man-db (2.12.0-3) ... 82s Processing triggers for install-info (7.1-3) ... 82s Processing triggers for libc-bin (2.39-0ubuntu2) ... 82s Reading package lists... 83s Building dependency tree... 83s Reading state information... 83s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 84s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 84s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 84s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 84s Hit:4 http://ftpmaster.internal/ubuntu noble-proposed InRelease 87s Reading package lists... 87s Reading package lists... 87s Building dependency tree... 87s Reading state information... 88s Calculating upgrade... 89s The following packages have been kept back: 89s curl 89s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 89s Reading package lists... 90s Building dependency tree... 90s Reading state information... 91s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 94s autopkgtest [17:35:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 94s autopkgtest [17:35:13]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-grohmm 97s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-grohmm 1.36.0-1 (dsc) [2187 B] 97s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-grohmm 1.36.0-1 (tar) [4360 kB] 97s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-grohmm 1.36.0-1 (diff) [3384 B] 97s gpgv: Signature made Fri Dec 1 06:52:15 2023 UTC 97s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 97s gpgv: issuer "tillea@rki.de" 97s gpgv: Can't check signature: No public key 97s dpkg-source: warning: cannot verify inline signature for ./r-bioc-grohmm_1.36.0-1.dsc: no acceptable signature found 98s autopkgtest [17:35:17]: testing package r-bioc-grohmm version 1.36.0-1 98s autopkgtest [17:35:17]: build not needed 99s autopkgtest [17:35:18]: test pkg-r-autopkgtest: preparing testbed 100s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s Starting pkgProblemResolver with broken count: 0 102s Starting 2 pkgProblemResolver with broken count: 0 102s Done 103s The following additional packages will be installed: 103s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 103s curl dctrl-tools fontconfig fontconfig-config fonts-dejavu-core 103s fonts-dejavu-mono fonts-font-awesome fonts-glyphicons-halflings 103s fonts-lmodern fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 103s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 103s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 103s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 103s libatomic1 libbibtex-parser-perl libblas-dev libblas3 libboost-dev 103s libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev libcairo2 libcc1-0 103s libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 103s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 103s libhwasan0 libice6 libicu-dev libio-string-perl libisl23 libitm1 libjbig0 103s libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev 103s libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js 103s libjs-jquery libjs-jquery-datatables libjs-jquery-selectize.js 103s libjs-jquery-ui libjs-json libjs-lunr libjs-mathjax libjs-microplugin.js 103s libjs-modernizr libjs-popper.js libjs-prettify libjs-sifter.js 103s libjs-twitter-bootstrap-datepicker libkpathsea6 liblapack-dev liblapack3 103s liblatex-tounicode-perl liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 103s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 103s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 103s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 103s libpng16-16t64 libpotrace0 libpsl5t64 libptexenc1 libreadline-dev 103s libreadline8t64 libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 103s libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev 103s libtirpc3t64 libtk8.6 libtsan2 libubsan1 libwebp7 libxaw7 libxcb-render0 103s libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 libxrender1 libxss1 libxt6t64 103s libzzip-0-13 linux-libc-dev node-bootstrap-sass node-html5shiv 103s node-normalize.css pandoc pandoc-data pkg-config pkg-r-autopkgtest pkgconf 103s pkgconf-bin r-base-core r-base-dev r-bioc-annotationdbi r-bioc-biobase 103s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 103s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-delayedarray 103s r-bioc-edger r-bioc-genomeinfodb r-bioc-genomeinfodbdata 103s r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges 103s r-bioc-grohmm r-bioc-iranges r-bioc-keggrest r-bioc-limma 103s r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib r-bioc-rsamtools 103s r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 103s r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind 103s r-cran-askpass r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit 103s r-cran-bit64 r-cran-bitops r-cran-blob r-cran-bookdown r-cran-bslib 103s r-cran-cachem r-cran-cli r-cran-codetools r-cran-commonmark r-cran-cpp11 103s r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest 103s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 103s r-cran-filelock r-cran-fontawesome r-cran-formatr r-cran-fs 103s r-cran-futile.logger r-cran-futile.options r-cran-generics r-cran-glue 103s r-cran-highr r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr 103s r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-lambda.r r-cran-later 103s r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-locfit r-cran-magrittr 103s r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime 103s r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr 103s r-cran-png r-cran-prettyunits r-cran-progress r-cran-promises r-cran-purrr 103s r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-rcurl r-cran-restfulr 103s r-cran-rjson r-cran-rlang r-cran-rmarkdown r-cran-rsqlite r-cran-sass 103s r-cran-shiny r-cran-snow r-cran-sourcetools r-cran-statmod r-cran-stringi 103s r-cran-stringr r-cran-sys r-cran-tibble r-cran-tidyr r-cran-tidyselect 103s r-cran-tinytex r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xfun r-cran-xml 103s r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common 103s texlive-base texlive-bibtex-extra texlive-binaries texlive-latex-base unzip 103s x11-common xdg-utils zip zlib1g-dev 103s Suggested packages: 103s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 103s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 103s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 103s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 103s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 103s libboost-context1.83-dev libboost-contract1.83-dev 103s libboost-coroutine1.83-dev libboost-date-time1.83-dev 103s libboost-exception1.83-dev libboost-fiber1.83-dev 103s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 103s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 103s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 103s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 103s libboost-numpy1.83-dev libboost-program-options1.83-dev 103s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 103s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 103s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 103s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 103s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 103s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 103s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 103s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 103s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 103s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 103s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 103s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 103s r-bioc-go.db r-cran-runit r-bioc-graph r-bioc-all r-cran-testthat 103s r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc 103s r-cran-doparallel r-bioc-variantannotation r-bioc-shortread 103s r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr 103s r-bioc-bsgenome r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr 103s r-bioc-delayedmatrixstats r-cran-readr r-bioc-rhdf5 r-cran-seuratobject 103s r-cran-r.utils r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown 103s r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-cran-biasedurn 103s r-cran-ellipse r-cran-gplots r-bioc-sparsematrixstats r-cran-roxygen2 103s r-cran-ff r-cran-covr r-cran-rstudioapi r-cran-rmysql r-cran-lubridate 103s r-cran-getopt r-cran-interp r-cran-gam r-cran-formattable r-cran-ggplot2 103s r-cran-nanotime r-cran-palmerpenguins r-cran-scales r-cran-survival 103s r-cran-units r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer 103s r-cran-spelling r-cran-bench r-cran-brio r-cran-callr r-cran-here 103s r-cran-pkgbuild r-cran-pkgload r-cran-plm r-cran-zoo debhelper ghostscript 103s gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 103s hintview texlive-latex-base-doc wp2latex 103s Recommended packages: 103s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 103s r-recommended r-doc-html r-cran-testthat r-bioc-biocversion r-cran-remotes 103s r-cran-downlit r-cran-htmlwidgets r-cran-rstudioapi r-cran-miniui 103s r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot r-cran-ggplot2 103s r-cran-thematic r-cran-callr r-cran-covr r-cran-mockery r-cran-processx 103s r-cran-ps r-cran-rprojroot r-cran-whoami r-cran-bench r-cran-brio 103s r-cran-decor r-cran-desc r-cran-lobstr r-cran-scales r-cran-spelling 103s r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql 103s r-cran-unitizer r-cran-rsvg r-cran-survival r-cran-pkgload r-cran-waldo 103s r-cran-cairo r-cran-markdown r-cran-ragg r-cran-jpeg r-cran-readr 103s r-cran-r.rsp r-cran-sf r-cran-gridsvg r-cran-magick r-cran-reticulate 103s r-cran-rgl r-cran-tikzdevice r-cran-svglite node-highlight.js r-cran-lintr 103s r-cran-tidyverse r-cran-r.devices r-cran-sodium r-cran-lubridate 103s r-cran-future r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest 103s r-cran-gert r-cran-gh r-cran-rvest r-cran-data.table r-cran-mockr 103s r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv lmodern dvisvgm 103s libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils 103s x11-xserver-utils 103s The following packages will be REMOVED: 103s libcurl4 libpng16-16 libpsl5 libreadline8 libtirpc3 103s The following NEW packages will be installed: 103s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 103s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 103s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 103s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 103s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 103s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 103s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 103s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 103s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 103s libcairo2 libcc1-0 libcrypt-dev libcurl4t64 libdatrie1 libdeflate0 103s libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 103s libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl 103s libisl23 libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev 103s libjpeg8 libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 103s libjs-es5-shim libjs-highlight.js libjs-jquery libjs-jquery-datatables 103s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 103s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 103s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 103s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 103s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 103s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 103s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 103s libpixman-1-0 libpkgconf3 libpng-dev libpng16-16t64 libpotrace0 libpsl5t64 103s libptexenc1 libreadline-dev libreadline8t64 libsharpyuv0 libsm6 103s libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 libtexlua53-5 libthai-data 103s libthai0 libtiff6 libtirpc-dev libtirpc3t64 libtk8.6 libtsan2 libubsan1 103s libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 libxpm4 103s libxrender1 libxss1 libxt6t64 libzzip-0-13 linux-libc-dev 103s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 103s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 103s r-bioc-annotationdbi r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics 103s r-bioc-biocio r-bioc-biocparallel r-bioc-biocstyle r-bioc-biomart 103s r-bioc-biostrings r-bioc-delayedarray r-bioc-edger r-bioc-genomeinfodb 103s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 103s r-bioc-genomicranges r-bioc-grohmm r-bioc-iranges r-bioc-keggrest 103s r-bioc-limma r-bioc-matrixgenerics r-bioc-org.hs.eg.db r-bioc-rhtslib 103s r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors 103s r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector 103s r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-base64enc r-cran-bh 103s r-cran-biocmanager r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob 103s r-cran-bookdown r-cran-bslib r-cran-cachem r-cran-cli r-cran-codetools 103s r-cran-commonmark r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi 103s r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-ellipsis r-cran-evaluate 103s r-cran-fansi r-cran-fastmap r-cran-filelock r-cran-fontawesome 103s r-cran-formatr r-cran-fs r-cran-futile.logger r-cran-futile.options 103s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 103s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 103s r-cran-lambda.r r-cran-later r-cran-lattice r-cran-lifecycle r-cran-littler 103s r-cran-locfit r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats 103s r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar r-cran-pkgconfig 103s r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits r-cran-progress 103s r-cran-promises r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp 103s r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rmarkdown 103s r-cran-rsqlite r-cran-sass r-cran-shiny r-cran-snow r-cran-sourcetools 103s r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble 103s r-cran-tidyr r-cran-tidyselect r-cran-tinytex r-cran-utf8 r-cran-vctrs 103s r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 r-cran-xtable r-cran-yaml 103s rpcsvc-proto t1utils tex-common texlive-base texlive-bibtex-extra 103s texlive-binaries texlive-latex-base unzip x11-common xdg-utils zip 103s zlib1g-dev 103s The following packages will be upgraded: 103s curl 103s 1 upgraded, 286 newly installed, 5 to remove and 0 not upgraded. 103s Need to get 489 MB/489 MB of archives. 103s After this operation, 1728 MB of additional disk space will be used. 103s Get:1 /tmp/autopkgtest.Uk6DLZ/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [764 B] 103s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpsl5t64 arm64 0.21.2-1.1 [57.4 kB] 103s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 curl arm64 8.5.0-2ubuntu7 [222 kB] 103s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libcurl4t64 arm64 8.5.0-2ubuntu7 [332 kB] 104s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng16-16t64 arm64 1.6.43-3 [185 kB] 104s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline8t64 arm64 8.2-3.1 [153 kB] 104s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.1 [83.5 kB] 104s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 104s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 104s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 104s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-dev arm64 1.3.4+ds-1.1 [201 kB] 104s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 104s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 104s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 104s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 104s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 104s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 104s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 104s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 104s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 104s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 104s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 104s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 104s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 104s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 104s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 104s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 104s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 104s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 104s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 104s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 105s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 105s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 105s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 105s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 105s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 105s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 105s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 105s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 105s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 105s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 105s Get:42 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 105s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 105s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 105s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 105s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 105s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 105s Get:48 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 105s Get:49 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 105s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 105s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 105s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 105s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 106s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 106s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 106s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 106s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 106s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 106s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 106s Get:60 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 106s Get:61 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 106s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 106s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 106s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 106s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 106s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 106s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 106s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 106s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 106s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 106s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 106s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 106s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 106s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 106s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 106s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 106s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 106s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 106s Get:79 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 106s Get:80 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 106s Get:81 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 106s Get:82 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 106s Get:83 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 106s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 106s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 107s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 107s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 107s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 107s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 107s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 107s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 107s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 107s Get:93 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 107s Get:94 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 107s Get:95 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 107s Get:96 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 107s Get:97 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 107s Get:98 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 107s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 107s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 107s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 107s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 107s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 107s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 107s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 107s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 107s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 107s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 107s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 107s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 107s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 107s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 107s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 107s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 107s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 107s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 107s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 108s Get:118 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libpng-dev arm64 1.6.43-3 [267 kB] 108s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 108s Get:120 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 108s Get:121 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libreadline-dev arm64 8.2-3.1 [177 kB] 108s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 108s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 108s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 108s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 108s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 108s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 108s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 108s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 108s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 108s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 108s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 108s Get:133 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 108s Get:134 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libxt6t64 arm64 1:1.2.1-1.2 [168 kB] 108s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 108s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 108s Get:137 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 108s Get:138 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 108s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 108s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 108s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 108s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 108s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 108s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 109s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 109s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 109s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 109s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 109s Get:149 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 109s Get:150 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 109s Get:151 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-core arm64 4.3.3-2build1 [26.8 MB] 110s Get:152 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 110s Get:153 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 r-base-dev all 4.3.3-2build1 [4334 B] 110s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 110s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 110s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 110s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 110s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 110s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 111s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 111s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 111s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 111s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 111s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 111s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 111s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 111s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 111s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 111s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 111s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 111s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 111s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 111s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 111s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 111s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 111s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 111s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 111s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 111s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 111s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 111s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 111s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 111s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 111s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 111s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 111s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 111s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 111s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 111s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 112s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 112s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 112s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 112s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 112s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 112s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 112s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 112s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 112s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 112s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 112s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 112s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 112s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 112s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 113s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 113s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 113s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 113s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 113s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 113s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 113s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 113s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 113s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 113s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 113s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 113s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 113s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 113s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 113s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 113s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 113s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 113s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 113s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 113s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 113s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 113s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 113s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 113s Get:227 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 114s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 114s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 114s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 114s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 114s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 114s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 114s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 114s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 114s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 114s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 114s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 114s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 114s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 114s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 114s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 114s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 114s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 114s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 114s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 114s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 114s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 114s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 114s Get:250 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 114s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 114s Get:252 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 114s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 115s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 115s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 115s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 117s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 117s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 117s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 117s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 117s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 117s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 117s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 117s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 117s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 117s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 117s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 117s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 117s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 117s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 117s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 117s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 117s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 117s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-locfit arm64 1.5-9.8-1 [507 kB] 117s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-edger arm64 4.0.16+dfsg-1 [1141 kB] 117s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 117s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 117s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 117s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 117s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 118s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 118s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 118s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 118s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 118s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 118s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-grohmm arm64 1.36.0-1 [4459 kB] 118s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-org.hs.eg.db all 3.18.0-1 [64.1 MB] 121s Preconfiguring packages ... 121s Fetched 489 MB in 16s (29.9 MB/s) 121s dpkg: libpsl5:arm64: dependency problems, but removing anyway as you requested: 121s wget depends on libpsl5 (>= 0.16.0). 121s libcurl4:arm64 depends on libpsl5 (>= 0.16.0). 121s libcurl3-gnutls:arm64 depends on libpsl5 (>= 0.16.0). 121s 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 121s Removing libpsl5:arm64 (0.21.2-1build1) ... 121s Selecting previously unselected package libpsl5t64:arm64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74769 files and directories currently installed.) 121s Preparing to unpack .../libpsl5t64_0.21.2-1.1_arm64.deb ... 121s Unpacking libpsl5t64:arm64 (0.21.2-1.1) ... 121s Preparing to unpack .../curl_8.5.0-2ubuntu7_arm64.deb ... 121s Unpacking curl (8.5.0-2ubuntu7) over (8.5.0-2ubuntu2) ... 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74775 files and directories currently installed.) 121s Removing libcurl4:arm64 (8.5.0-2ubuntu2) ... 121s Selecting previously unselected package libcurl4t64:arm64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74770 files and directories currently installed.) 121s Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu7_arm64.deb ... 121s Unpacking libcurl4t64:arm64 (8.5.0-2ubuntu7) ... 121s dpkg: libpng16-16:arm64: dependency problems, but removing anyway as you requested: 121s libplymouth5:arm64 depends on libpng16-16 (>= 1.6.2). 121s libfreetype6:arm64 depends on libpng16-16 (>= 1.6.2-1). 121s 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74776 files and directories currently installed.) 121s Removing libpng16-16:arm64 (1.6.43-1) ... 121s Selecting previously unselected package libpng16-16t64:arm64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74766 files and directories currently installed.) 121s Preparing to unpack .../libpng16-16t64_1.6.43-3_arm64.deb ... 121s Unpacking libpng16-16t64:arm64 (1.6.43-3) ... 122s dpkg: libreadline8:arm64: dependency problems, but removing anyway as you requested: 122s parted depends on libreadline8 (>= 6.0). 122s libpython3.12-stdlib:arm64 depends on libreadline8 (>= 7.0~beta). 122s gpgsm depends on libreadline8 (>= 6.0). 122s gpgconf depends on libreadline8 (>= 6.0). 122s gpg depends on libreadline8 (>= 6.0). 122s gawk depends on libreadline8 (>= 6.0). 122s fdisk depends on libreadline8 (>= 6.0). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74777 files and directories currently installed.) 122s Removing libreadline8:arm64 (8.2-3) ... 122s Selecting previously unselected package libreadline8t64:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74765 files and directories currently installed.) 122s Preparing to unpack .../libreadline8t64_8.2-3.1_arm64.deb ... 122s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' 122s Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' 122s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' 122s Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' 122s Unpacking libreadline8t64:arm64 (8.2-3.1) ... 122s dpkg: libtirpc3:arm64: dependency problems, but removing anyway as you requested: 122s lsof depends on libtirpc3 (>= 1.0.2). 122s libpython3.12-stdlib:arm64 depends on libtirpc3 (>= 1.0.2). 122s libnss-nisplus:arm64 depends on libtirpc3 (>= 1.0.2). 122s libnsl2:arm64 depends on libtirpc3 (>= 1.0.2). 122s iproute2 depends on libtirpc3 (>= 1.0.2). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74785 files and directories currently installed.) 122s Removing libtirpc3:arm64 (1.3.4+ds-1build1) ... 122s Selecting previously unselected package libtirpc3t64:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74779 files and directories currently installed.) 122s Preparing to unpack .../000-libtirpc3t64_1.3.4+ds-1.1_arm64.deb ... 122s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' 122s Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' 122s Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 122s Selecting previously unselected package libc-dev-bin. 122s Preparing to unpack .../001-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 122s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 122s Selecting previously unselected package linux-libc-dev:arm64. 122s Preparing to unpack .../002-linux-libc-dev_6.8.0-11.11_arm64.deb ... 122s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 122s Selecting previously unselected package libcrypt-dev:arm64. 122s Preparing to unpack .../003-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 122s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 122s Selecting previously unselected package libtirpc-dev:arm64. 122s Preparing to unpack .../004-libtirpc-dev_1.3.4+ds-1.1_arm64.deb ... 122s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1.1) ... 122s Selecting previously unselected package libnsl-dev:arm64. 122s Preparing to unpack .../005-libnsl-dev_1.3.0-3_arm64.deb ... 122s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 122s Selecting previously unselected package rpcsvc-proto. 122s Preparing to unpack .../006-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 122s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 122s Selecting previously unselected package libc6-dev:arm64. 122s Preparing to unpack .../007-libc6-dev_2.39-0ubuntu2_arm64.deb ... 122s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 122s Selecting previously unselected package libisl23:arm64. 122s Preparing to unpack .../008-libisl23_0.26-3_arm64.deb ... 122s Unpacking libisl23:arm64 (0.26-3) ... 122s Selecting previously unselected package libmpc3:arm64. 122s Preparing to unpack .../009-libmpc3_1.3.1-1_arm64.deb ... 122s Unpacking libmpc3:arm64 (1.3.1-1) ... 123s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 123s Preparing to unpack .../010-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 123s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 123s Selecting previously unselected package cpp-13. 123s Preparing to unpack .../011-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 123s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 123s Selecting previously unselected package cpp-aarch64-linux-gnu. 123s Preparing to unpack .../012-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 123s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 123s Selecting previously unselected package cpp. 123s Preparing to unpack .../013-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 123s Unpacking cpp (4:13.2.0-7ubuntu1) ... 123s Selecting previously unselected package libcc1-0:arm64. 123s Preparing to unpack .../014-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libgomp1:arm64. 123s Preparing to unpack .../015-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libitm1:arm64. 123s Preparing to unpack .../016-libitm1_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libatomic1:arm64. 123s Preparing to unpack .../017-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libasan8:arm64. 123s Preparing to unpack .../018-libasan8_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package liblsan0:arm64. 123s Preparing to unpack .../019-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libtsan2:arm64. 123s Preparing to unpack .../020-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libubsan1:arm64. 123s Preparing to unpack .../021-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libhwasan0:arm64. 123s Preparing to unpack .../022-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 123s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 123s Selecting previously unselected package libgcc-13-dev:arm64. 123s Preparing to unpack .../023-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 123s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 124s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 124s Preparing to unpack .../024-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 124s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package gcc-13. 125s Preparing to unpack .../025-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package gcc-aarch64-linux-gnu. 125s Preparing to unpack .../026-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 125s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 125s Selecting previously unselected package gcc. 125s Preparing to unpack .../027-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 125s Unpacking gcc (4:13.2.0-7ubuntu1) ... 125s Selecting previously unselected package libstdc++-13-dev:arm64. 125s Preparing to unpack .../028-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package g++-13-aarch64-linux-gnu. 125s Preparing to unpack .../029-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package g++-13. 125s Preparing to unpack .../030-g++-13_13.2.0-17ubuntu2_arm64.deb ... 125s Unpacking g++-13 (13.2.0-17ubuntu2) ... 125s Selecting previously unselected package g++-aarch64-linux-gnu. 125s Preparing to unpack .../031-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 125s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package g++. 126s Preparing to unpack .../032-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 126s Unpacking g++ (4:13.2.0-7ubuntu1) ... 126s Selecting previously unselected package build-essential. 126s Preparing to unpack .../033-build-essential_12.10ubuntu1_arm64.deb ... 126s Unpacking build-essential (12.10ubuntu1) ... 126s Selecting previously unselected package dctrl-tools. 126s Preparing to unpack .../034-dctrl-tools_2.24-3build2_arm64.deb ... 126s Unpacking dctrl-tools (2.24-3build2) ... 126s Selecting previously unselected package fonts-dejavu-mono. 126s Preparing to unpack .../035-fonts-dejavu-mono_2.37-8_all.deb ... 126s Unpacking fonts-dejavu-mono (2.37-8) ... 126s Selecting previously unselected package fonts-dejavu-core. 126s Preparing to unpack .../036-fonts-dejavu-core_2.37-8_all.deb ... 126s Unpacking fonts-dejavu-core (2.37-8) ... 126s Selecting previously unselected package fontconfig-config. 126s Preparing to unpack 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fonts-lmodern. 126s Preparing to unpack .../042-fonts-lmodern_2.005-1_all.deb ... 126s Unpacking fonts-lmodern (2.005-1) ... 126s Selecting previously unselected package fonts-mathjax. 126s Preparing to unpack .../043-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 126s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 126s Selecting previously unselected package libgfortran5:arm64. 126s Preparing to unpack .../044-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 126s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 126s Selecting previously unselected package libgfortran-13-dev:arm64. 126s Preparing to unpack .../045-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 126s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 127s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 127s Preparing to unpack .../046-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 127s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 127s Selecting previously unselected package gfortran-13. 127s Preparing to unpack .../047-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 127s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 127s Selecting previously unselected package gfortran-aarch64-linux-gnu. 127s Preparing to unpack .../048-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 127s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 127s Selecting previously unselected package gfortran. 127s Preparing to unpack .../049-gfortran_4%3a13.2.0-7ubuntu1_arm64.deb ... 127s Unpacking gfortran (4:13.2.0-7ubuntu1) ... 127s Selecting previously unselected package icu-devtools. 127s Preparing to unpack .../050-icu-devtools_74.2-1ubuntu1_arm64.deb ... 127s Unpacking icu-devtools (74.2-1ubuntu1) ... 127s Selecting previously unselected package javascript-common. 127s Preparing to unpack .../051-javascript-common_11+nmu1_all.deb ... 127s Unpacking javascript-common (11+nmu1) ... 127s Selecting previously unselected package libio-string-perl. 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libharfbuzz0b:arm64. 129s Preparing to unpack .../068-libharfbuzz0b_8.3.0-2_arm64.deb ... 129s Unpacking libharfbuzz0b:arm64 (8.3.0-2) ... 129s Selecting previously unselected package x11-common. 130s Preparing to unpack .../069-x11-common_1%3a7.7+23ubuntu2_all.deb ... 130s Unpacking x11-common (1:7.7+23ubuntu2) ... 130s Selecting previously unselected package libice6:arm64. 130s Preparing to unpack .../070-libice6_2%3a1.0.10-1build2_arm64.deb ... 130s Unpacking libice6:arm64 (2:1.0.10-1build2) ... 130s Selecting previously unselected package libicu-dev:arm64. 130s Preparing to unpack .../071-libicu-dev_74.2-1ubuntu1_arm64.deb ... 130s Unpacking libicu-dev:arm64 (74.2-1ubuntu1) ... 130s Selecting previously unselected package libjpeg-turbo8:arm64. 130s Preparing to unpack .../072-libjpeg-turbo8_2.1.5-2ubuntu1_arm64.deb ... 130s Unpacking libjpeg-turbo8:arm64 (2.1.5-2ubuntu1) ... 130s Selecting previously unselected package libjpeg-turbo8-dev:arm64. 130s Preparing to unpack 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package libjs-jquery-datatables. 130s Preparing to unpack .../084-libjs-jquery-datatables_1.11.5+dfsg-2_all.deb ... 130s Unpacking libjs-jquery-datatables (1.11.5+dfsg-2) ... 130s Selecting previously unselected package libjs-sifter.js. 130s Preparing to unpack .../085-libjs-sifter.js_0.6.0+dfsg-3_all.deb ... 130s Unpacking libjs-sifter.js (0.6.0+dfsg-3) ... 130s Selecting previously unselected package libjs-microplugin.js. 130s Preparing to unpack .../086-libjs-microplugin.js_0.0.3+dfsg-1.1_all.deb ... 130s Unpacking libjs-microplugin.js (0.0.3+dfsg-1.1) ... 130s Selecting previously unselected package libjs-jquery-selectize.js. 131s Preparing to unpack .../087-libjs-jquery-selectize.js_0.12.6+dfsg-1.1_all.deb ... 131s Unpacking libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 131s Selecting previously unselected package libjs-jquery-ui. 131s Preparing to unpack .../088-libjs-jquery-ui_1.13.2+dfsg-1_all.deb ... 131s Unpacking libjs-jquery-ui (1.13.2+dfsg-1) ... 131s Selecting previously unselected package libjs-json. 131s Preparing to unpack .../089-libjs-json_0~20221030+~1.0.8-1_all.deb ... 131s Unpacking libjs-json (0~20221030+~1.0.8-1) ... 131s Selecting previously unselected package libjs-lunr. 131s Preparing to unpack .../090-libjs-lunr_2.3.9~dfsg-2_all.deb ... 131s Unpacking libjs-lunr (2.3.9~dfsg-2) ... 131s Selecting previously unselected package libjs-prettify. 131s Preparing to unpack .../091-libjs-prettify_2015.12.04+dfsg-1.1_all.deb ... 131s Unpacking libjs-prettify (2015.12.04+dfsg-1.1) ... 131s Selecting previously unselected package libkpathsea6:arm64. 131s Preparing to unpack .../092-libkpathsea6_2023.20230311.66589-9_arm64.deb ... 131s Unpacking libkpathsea6:arm64 (2023.20230311.66589-9) ... 131s Selecting previously unselected package liblapack3:arm64. 131s Preparing to unpack .../093-liblapack3_3.12.0-3_arm64.deb ... 131s Unpacking liblapack3:arm64 (3.12.0-3) ... 131s Selecting previously unselected package liblapack-dev:arm64. 131s Preparing to unpack .../094-liblapack-dev_3.12.0-3_arm64.deb ... 131s Unpacking liblapack-dev:arm64 (3.12.0-3) ... 131s Selecting previously unselected package liblerc4:arm64. 131s Preparing to unpack .../095-liblerc4_4.0.0+ds-4ubuntu1_arm64.deb ... 131s Unpacking liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 131s Selecting previously unselected package liblua5.4-0:arm64. 131s Preparing to unpack .../096-liblua5.4-0_5.4.6-3_arm64.deb ... 131s Unpacking liblua5.4-0:arm64 (5.4.6-3) ... 131s Selecting previously unselected package libncurses-dev:arm64. 131s Preparing to unpack .../097-libncurses-dev_6.4+20240113-1ubuntu1_arm64.deb ... 131s Unpacking libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 131s Selecting previously unselected package libthai-data. 131s Preparing to unpack .../098-libthai-data_0.1.29-2_all.deb ... 131s Unpacking libthai-data (0.1.29-2) ... 131s Selecting previously unselected package libthai0:arm64. 131s Preparing to unpack .../099-libthai0_0.1.29-2_arm64.deb ... 131s Unpacking libthai0:arm64 (0.1.29-2) ... 131s Selecting previously unselected package libpango-1.0-0:arm64. 131s Preparing to unpack .../100-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 131s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 131s Selecting previously unselected package libpangoft2-1.0-0:arm64. 131s Preparing to unpack .../101-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 131s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 131s Selecting previously unselected package libpangocairo-1.0-0:arm64. 131s Preparing to unpack .../102-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 131s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 131s Selecting previously unselected package libpaper1:arm64. 131s Preparing to unpack .../103-libpaper1_1.1.29_arm64.deb ... 131s Unpacking libpaper1:arm64 (1.1.29) ... 131s Selecting previously unselected package libpaper-utils. 131s Preparing to unpack .../104-libpaper-utils_1.1.29_arm64.deb ... 131s Unpacking libpaper-utils (1.1.29) ... 131s Selecting previously unselected package libpcre2-16-0:arm64. 132s Preparing to unpack .../105-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 132s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 132s Selecting previously unselected package libpcre2-32-0:arm64. 132s Preparing to unpack .../106-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 132s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 132s Selecting previously unselected package libpcre2-posix3:arm64. 132s Preparing to unpack .../107-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 132s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 132s Selecting previously unselected package libpcre2-dev:arm64. 132s Preparing to unpack .../108-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 132s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 132s Selecting previously unselected package libpkgconf3:arm64. 132s Preparing to unpack .../109-libpkgconf3_1.8.1-2_arm64.deb ... 132s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 132s Selecting previously unselected package zlib1g-dev:arm64. 132s Preparing to unpack .../110-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 132s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 132s Selecting previously unselected package libpng-dev:arm64. 132s Preparing to unpack .../111-libpng-dev_1.6.43-3_arm64.deb ... 132s Unpacking libpng-dev:arm64 (1.6.43-3) ... 132s Selecting previously unselected package libpotrace0:arm64. 132s Preparing to unpack .../112-libpotrace0_1.16-2_arm64.deb ... 132s Unpacking libpotrace0:arm64 (1.16-2) ... 132s Selecting previously unselected package libptexenc1:arm64. 132s Preparing to unpack .../113-libptexenc1_2023.20230311.66589-9_arm64.deb ... 132s Unpacking libptexenc1:arm64 (2023.20230311.66589-9) ... 132s Selecting previously unselected package libreadline-dev:arm64. 132s Preparing to unpack .../114-libreadline-dev_8.2-3.1_arm64.deb ... 132s Unpacking libreadline-dev:arm64 (8.2-3.1) ... 132s Selecting previously unselected package libsharpyuv0:arm64. 132s Preparing to unpack .../115-libsharpyuv0_1.3.2-0.4_arm64.deb ... 132s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 132s Selecting previously unselected package libsm6:arm64. 132s Preparing to unpack .../116-libsm6_2%3a1.2.3-1build2_arm64.deb ... 132s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 132s Selecting previously unselected package libsynctex2:arm64. 132s Preparing to unpack .../117-libsynctex2_2023.20230311.66589-9_arm64.deb ... 132s Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 132s Selecting previously unselected package libtcl8.6:arm64. 132s Preparing to unpack .../118-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 132s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 132s Selecting previously unselected package libteckit0:arm64. 133s Preparing to unpack .../119-libteckit0_2.5.12+ds1-1_arm64.deb ... 133s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 133s Selecting previously unselected package libtexlua53-5:arm64. 133s Preparing to unpack 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libxss1:arm64 (1:1.2.3-1build2) ... 133s Selecting previously unselected package libtk8.6:arm64. 133s Preparing to unpack .../126-libtk8.6_8.6.13-2_arm64.deb ... 133s Unpacking libtk8.6:arm64 (8.6.13-2) ... 133s Selecting previously unselected package libxt6t64:arm64. 133s Preparing to unpack .../127-libxt6t64_1%3a1.2.1-1.2_arm64.deb ... 133s Unpacking libxt6t64:arm64 (1:1.2.1-1.2) ... 133s Selecting previously unselected package libxmu6:arm64. 133s Preparing to unpack .../128-libxmu6_2%3a1.1.3-3_arm64.deb ... 133s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 133s Selecting previously unselected package libxpm4:arm64. 133s Preparing to unpack .../129-libxpm4_1%3a3.5.17-1_arm64.deb ... 133s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 133s Selecting previously unselected package libxaw7:arm64. 133s Preparing to unpack .../130-libxaw7_2%3a1.0.14-1_arm64.deb ... 133s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 133s Selecting previously unselected package libxi6:arm64. 133s Preparing to unpack .../131-libxi6_2%3a1.8.1-1_arm64.deb ... 133s Unpacking libxi6:arm64 (2:1.8.1-1) ... 133s Selecting previously unselected package libzzip-0-13:arm64. 133s Preparing to unpack .../132-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 133s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 133s Selecting previously unselected package node-bootstrap-sass. 133s Preparing to unpack .../133-node-bootstrap-sass_3.4.3-2_all.deb ... 133s Unpacking node-bootstrap-sass (3.4.3-2) ... 133s Selecting previously unselected package node-html5shiv. 133s Preparing to unpack .../134-node-html5shiv_3.7.3+dfsg-5_all.deb ... 133s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 133s Selecting previously unselected package node-normalize.css. 133s Preparing to unpack .../135-node-normalize.css_8.0.1-5_all.deb ... 133s Unpacking node-normalize.css (8.0.1-5) ... 133s Selecting previously unselected package pandoc-data. 133s Preparing to unpack .../136-pandoc-data_3.1.3-1_all.deb ... 133s Unpacking pandoc-data (3.1.3-1) ... 133s Selecting previously unselected package pandoc. 133s Preparing to unpack .../137-pandoc_3.1.3+ds-2_arm64.deb ... 133s Unpacking pandoc (3.1.3+ds-2) ... 134s Selecting previously unselected package pkgconf-bin. 135s Preparing to unpack .../138-pkgconf-bin_1.8.1-2_arm64.deb ... 135s Unpacking pkgconf-bin (1.8.1-2) ... 135s Selecting previously unselected package pkgconf:arm64. 135s Preparing to unpack .../139-pkgconf_1.8.1-2_arm64.deb ... 135s Unpacking pkgconf:arm64 (1.8.1-2) ... 135s Selecting previously unselected package pkg-config:arm64. 135s Preparing to unpack .../140-pkg-config_1.8.1-2_arm64.deb ... 135s Unpacking pkg-config:arm64 (1.8.1-2) ... 135s Selecting previously unselected package zip. 135s Preparing to unpack .../141-zip_3.0-13_arm64.deb ... 135s Unpacking zip (3.0-13) ... 135s Selecting previously unselected package unzip. 135s Preparing to unpack .../142-unzip_6.0-28ubuntu3_arm64.deb ... 135s Unpacking unzip (6.0-28ubuntu3) ... 135s Selecting previously unselected package xdg-utils. 135s Preparing to unpack .../143-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 135s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 135s Selecting previously unselected package r-base-core. 135s Preparing to unpack .../144-r-base-core_4.3.3-2build1_arm64.deb ... 135s Unpacking r-base-core (4.3.3-2build1) ... 135s Selecting previously unselected package liblzma-dev:arm64. 135s Preparing to unpack .../145-liblzma-dev_5.4.5-0.3_arm64.deb ... 135s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 135s Selecting previously unselected package r-base-dev. 135s Preparing to unpack .../146-r-base-dev_4.3.3-2build1_all.deb ... 135s Unpacking r-base-dev (4.3.3-2build1) ... 135s Selecting previously unselected package pkg-r-autopkgtest. 135s Preparing to unpack .../147-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 135s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 135s Selecting previously unselected package r-bioc-biocgenerics. 135s Preparing to unpack .../148-r-bioc-biocgenerics_0.48.1-2_all.deb ... 135s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 135s Selecting previously unselected package r-bioc-biobase. 135s Preparing to unpack .../149-r-bioc-biobase_2.62.0-1_arm64.deb ... 135s Unpacking r-bioc-biobase (2.62.0-1) ... 135s Selecting previously unselected package r-bioc-s4vectors. 135s Preparing to unpack .../150-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 135s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 135s Selecting previously unselected package r-bioc-iranges. 135s Preparing to unpack .../151-r-bioc-iranges_2.36.0-1_arm64.deb ... 135s Unpacking r-bioc-iranges (2.36.0-1) ... 136s Selecting previously unselected package r-cran-dbi. 136s Preparing to unpack .../152-r-cran-dbi_1.2.2-1_all.deb ... 136s Unpacking r-cran-dbi (1.2.2-1) ... 136s Selecting previously unselected package r-cran-bit. 136s Preparing to unpack .../153-r-cran-bit_4.0.5-1_arm64.deb ... 136s Unpacking r-cran-bit (4.0.5-1) ... 136s Selecting previously unselected package r-cran-bit64. 137s Preparing to unpack .../154-r-cran-bit64_4.0.5-1_arm64.deb ... 137s Unpacking r-cran-bit64 (4.0.5-1) ... 137s Selecting previously unselected package r-cran-rlang. 137s Preparing to unpack .../155-r-cran-rlang_1.1.3-1_arm64.deb ... 137s Unpacking r-cran-rlang (1.1.3-1) ... 137s Selecting previously unselected package r-cran-cli. 137s Preparing to unpack .../156-r-cran-cli_3.6.2-1_arm64.deb ... 137s Unpacking r-cran-cli (3.6.2-1) ... 137s Selecting previously unselected package r-cran-glue. 137s Preparing to unpack .../157-r-cran-glue_1.7.0-1_arm64.deb ... 137s Unpacking r-cran-glue (1.7.0-1) ... 137s Selecting previously unselected package r-cran-lifecycle. 137s Preparing to unpack .../158-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 137s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 137s Selecting previously unselected package r-cran-vctrs. 137s Preparing to unpack .../159-r-cran-vctrs_0.6.5-1_arm64.deb ... 137s Unpacking r-cran-vctrs (0.6.5-1) ... 137s Selecting previously unselected package r-cran-blob. 137s Preparing to unpack .../160-r-cran-blob_1.2.4-1_all.deb ... 137s Unpacking r-cran-blob (1.2.4-1) ... 137s Selecting previously unselected package r-cran-fastmap. 137s Preparing to unpack .../161-r-cran-fastmap_1.1.1-1_arm64.deb ... 137s Unpacking r-cran-fastmap (1.1.1-1) ... 137s Selecting previously unselected package r-cran-cachem. 137s Preparing to unpack .../162-r-cran-cachem_1.0.8-1_arm64.deb ... 137s Unpacking r-cran-cachem (1.0.8-1) ... 137s Selecting previously unselected package r-cran-memoise. 137s Preparing to unpack .../163-r-cran-memoise_2.0.1-1_all.deb ... 137s Unpacking r-cran-memoise (2.0.1-1) ... 137s Selecting previously unselected package r-cran-pkgconfig. 137s Preparing to unpack .../164-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 137s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 137s Selecting previously unselected package r-cran-plogr. 137s Preparing to unpack .../165-r-cran-plogr_0.2.0-3build1_all.deb ... 137s Unpacking r-cran-plogr (0.2.0-3build1) ... 137s Selecting previously unselected package r-cran-cpp11. 137s Preparing to unpack .../166-r-cran-cpp11_0.4.7-1_all.deb ... 137s Unpacking r-cran-cpp11 (0.4.7-1) ... 138s Selecting previously unselected package r-cran-rsqlite. 138s Preparing to unpack .../167-r-cran-rsqlite_2.3.4-1_arm64.deb ... 138s Unpacking r-cran-rsqlite (2.3.4-1) ... 138s Selecting previously unselected package r-cran-curl. 138s Preparing to unpack .../168-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 138s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 138s Selecting previously unselected package r-cran-jsonlite. 138s Preparing to unpack .../169-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 138s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 138s Selecting previously unselected package r-cran-mime. 138s Preparing to unpack .../170-r-cran-mime_0.12-1_arm64.deb ... 138s Unpacking r-cran-mime (0.12-1) ... 138s Selecting previously unselected package r-cran-sys. 138s Preparing to unpack .../171-r-cran-sys_3.4.2-1_arm64.deb ... 138s Unpacking r-cran-sys (3.4.2-1) ... 138s Selecting previously unselected package r-cran-askpass. 138s Preparing to unpack .../172-r-cran-askpass_1.2.0-1_arm64.deb ... 138s Unpacking r-cran-askpass (1.2.0-1) ... 138s Selecting previously unselected package r-cran-openssl. 138s Preparing to unpack .../173-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 138s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 138s Selecting previously unselected package r-cran-r6. 138s Preparing to unpack .../174-r-cran-r6_2.5.1-1_all.deb ... 138s Unpacking r-cran-r6 (2.5.1-1) ... 138s Selecting previously unselected package r-cran-httr. 138s Preparing to unpack .../175-r-cran-httr_1.4.7+dfsg-1_all.deb ... 138s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 138s Selecting previously unselected package r-cran-png. 138s Preparing to unpack .../176-r-cran-png_0.1-8-1_arm64.deb ... 138s Unpacking r-cran-png (0.1-8-1) ... 138s Selecting previously unselected package r-bioc-zlibbioc. 138s Preparing to unpack .../177-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 138s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 138s Selecting previously unselected package r-bioc-xvector. 138s Preparing to unpack .../178-r-bioc-xvector_0.42.0-1_arm64.deb ... 138s Unpacking r-bioc-xvector (0.42.0-1) ... 138s Selecting previously unselected package r-cran-bitops. 138s Preparing to unpack .../179-r-cran-bitops_1.0-7-1_arm64.deb ... 138s Unpacking r-cran-bitops (1.0-7-1) ... 138s Selecting previously unselected package r-cran-rcurl. 138s Preparing to unpack .../180-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 138s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 138s Selecting previously unselected package r-bioc-genomeinfodbdata. 138s Preparing to unpack .../181-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 138s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 138s Selecting previously unselected package r-bioc-genomeinfodb. 138s Preparing to unpack .../182-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 138s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 138s Selecting previously unselected package r-cran-crayon. 138s Preparing to unpack .../183-r-cran-crayon_1.5.2-1_all.deb ... 138s Unpacking r-cran-crayon (1.5.2-1) ... 138s Selecting previously unselected package r-bioc-biostrings. 138s Preparing to unpack .../184-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 138s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 139s Selecting previously unselected package r-bioc-keggrest. 139s Preparing to unpack .../185-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 139s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 139s Selecting previously unselected package r-bioc-annotationdbi. 139s Preparing to unpack .../186-r-bioc-annotationdbi_1.64.1-1_all.deb ... 139s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 139s Selecting previously unselected package r-cran-generics. 139s Preparing to unpack .../187-r-cran-generics_0.1.3-1_all.deb ... 139s Unpacking r-cran-generics (0.1.3-1) ... 139s Selecting previously unselected package r-cran-magrittr. 139s Preparing to unpack .../188-r-cran-magrittr_2.0.3-1_arm64.deb ... 139s Unpacking r-cran-magrittr (2.0.3-1) ... 139s Selecting previously unselected package r-cran-fansi. 139s Preparing to unpack .../189-r-cran-fansi_1.0.5-1_arm64.deb ... 139s Unpacking r-cran-fansi (1.0.5-1) ... 139s Selecting previously unselected package r-cran-utf8. 139s Preparing to unpack .../190-r-cran-utf8_1.2.4-1_arm64.deb ... 139s Unpacking r-cran-utf8 (1.2.4-1) ... 139s Selecting previously unselected package r-cran-pillar. 139s Preparing to unpack .../191-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 139s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 139s Selecting previously unselected package r-cran-tibble. 139s Preparing to unpack .../192-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 139s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 139s Selecting previously unselected package r-cran-withr. 139s Preparing to unpack .../193-r-cran-withr_2.5.0-1_all.deb ... 139s Unpacking r-cran-withr (2.5.0-1) ... 140s Selecting previously unselected package r-cran-tidyselect. 140s Preparing to unpack .../194-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 140s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 140s Selecting previously unselected package r-cran-dplyr. 140s Preparing to unpack .../195-r-cran-dplyr_1.1.4-1_arm64.deb ... 140s Unpacking r-cran-dplyr (1.1.4-1) ... 140s Selecting previously unselected package r-cran-purrr. 140s Preparing to unpack .../196-r-cran-purrr_1.0.2-1_arm64.deb ... 140s Unpacking r-cran-purrr (1.0.2-1) ... 140s Selecting previously unselected package r-cran-stringi. 140s Preparing to unpack .../197-r-cran-stringi_1.8.3-1_arm64.deb ... 140s Unpacking r-cran-stringi (1.8.3-1) ... 140s Selecting previously unselected package r-cran-stringr. 140s Preparing to unpack .../198-r-cran-stringr_1.5.1-1_all.deb ... 140s Unpacking r-cran-stringr (1.5.1-1) ... 140s Selecting previously unselected package r-cran-tidyr. 140s Preparing to unpack .../199-r-cran-tidyr_1.3.1-1_arm64.deb ... 140s Unpacking r-cran-tidyr (1.3.1-1) ... 140s Selecting previously unselected package r-cran-dbplyr. 140s Preparing to unpack .../200-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 140s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 140s Selecting previously unselected package r-cran-filelock. 140s Preparing to unpack .../201-r-cran-filelock_1.0.3-1_arm64.deb ... 140s Unpacking r-cran-filelock (1.0.3-1) ... 140s Selecting previously unselected package r-bioc-biocfilecache. 140s Preparing to unpack .../202-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 140s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 140s Selecting previously unselected package r-bioc-biocio. 140s Preparing to unpack .../203-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 140s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 140s Selecting previously unselected package r-cran-formatr. 140s Preparing to unpack .../204-r-cran-formatr_1.14-1_all.deb ... 140s Unpacking r-cran-formatr (1.14-1) ... 140s Selecting previously unselected package r-cran-lambda.r. 140s Preparing to unpack .../205-r-cran-lambda.r_1.2.4-2build1_all.deb ... 140s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 140s Selecting previously unselected package r-cran-futile.options. 140s Preparing to unpack .../206-r-cran-futile.options_1.0.1-3build1_all.deb ... 140s Unpacking r-cran-futile.options (1.0.1-3build1) ... 140s Selecting previously unselected package r-cran-futile.logger. 141s Preparing to unpack .../207-r-cran-futile.logger_1.4.3-4build1_all.deb ... 141s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 141s Selecting previously unselected package r-cran-snow. 141s Preparing to unpack .../208-r-cran-snow_1%3a0.4.4-2_all.deb ... 141s Unpacking r-cran-snow (1:0.4.4-2) ... 141s Selecting previously unselected package r-cran-codetools. 141s Preparing to unpack .../209-r-cran-codetools_0.2-19-1_all.deb ... 141s Unpacking r-cran-codetools (0.2-19-1) ... 141s Selecting previously unselected package r-cran-bh. 141s Preparing to unpack .../210-r-cran-bh_1.84.0-1_all.deb ... 141s Unpacking r-cran-bh (1.84.0-1) ... 141s Selecting previously unselected package r-bioc-biocparallel. 141s Preparing to unpack .../211-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 141s Unpacking r-bioc-biocparallel (1.36.0-1) ... 141s Selecting previously unselected package r-cran-base64enc. 141s Preparing to unpack .../212-r-cran-base64enc_0.1-3-3_arm64.deb ... 141s Unpacking r-cran-base64enc (0.1-3-3) ... 141s Selecting previously unselected package r-cran-digest. 141s Preparing to unpack .../213-r-cran-digest_0.6.34-1_arm64.deb ... 141s Unpacking r-cran-digest (0.6.34-1) ... 141s Selecting previously unselected package r-cran-ellipsis. 141s Preparing to unpack .../214-r-cran-ellipsis_0.3.2-2_arm64.deb ... 141s Unpacking r-cran-ellipsis (0.3.2-2) ... 141s Selecting previously unselected package r-cran-htmltools. 141s Preparing to unpack .../215-r-cran-htmltools_0.5.7-1_arm64.deb ... 141s Unpacking r-cran-htmltools (0.5.7-1) ... 141s Selecting previously unselected package r-cran-evaluate. 141s Preparing to unpack .../216-r-cran-evaluate_0.23-1_all.deb ... 141s Unpacking r-cran-evaluate (0.23-1) ... 141s Selecting previously unselected package r-cran-xfun. 141s Preparing to unpack .../217-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 141s Unpacking r-cran-xfun (0.41+dfsg-1) ... 141s Selecting previously unselected package r-cran-highr. 141s Preparing to unpack .../218-r-cran-highr_0.10+dfsg-1_all.deb ... 141s Unpacking r-cran-highr (0.10+dfsg-1) ... 141s Selecting previously unselected package r-cran-yaml. 141s Preparing to unpack .../219-r-cran-yaml_2.3.8-1_arm64.deb ... 141s Unpacking r-cran-yaml (2.3.8-1) ... 141s Selecting previously unselected package libjs-mathjax. 141s Preparing to unpack .../220-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 141s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 142s Selecting previously unselected package r-cran-knitr. 142s Preparing to unpack .../221-r-cran-knitr_1.45+dfsg-1_all.deb ... 142s Unpacking r-cran-knitr (1.45+dfsg-1) ... 142s Selecting previously unselected package r-cran-jquerylib. 142s Preparing to unpack .../222-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 142s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 142s Selecting previously unselected package r-cran-fs. 142s Preparing to unpack .../223-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 142s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 142s Selecting previously unselected package r-cran-rappdirs. 142s Preparing to unpack .../224-r-cran-rappdirs_0.3.3-1_arm64.deb ... 142s Unpacking r-cran-rappdirs (0.3.3-1) ... 142s Selecting previously unselected package r-cran-sass. 142s Preparing to unpack .../225-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 142s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 142s Selecting previously unselected package r-cran-bslib. 142s Preparing to unpack .../226-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 142s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 143s Selecting previously unselected package r-cran-fontawesome. 143s Preparing to unpack .../227-r-cran-fontawesome_0.5.2-1_all.deb ... 143s Unpacking r-cran-fontawesome (0.5.2-1) ... 143s Selecting previously unselected package r-cran-tinytex. 143s Preparing to unpack .../228-r-cran-tinytex_0.49-1_all.deb ... 143s Unpacking r-cran-tinytex (0.49-1) ... 143s Selecting previously unselected package libjs-modernizr. 143s Preparing to unpack .../229-libjs-modernizr_2.6.2+ds1-5_all.deb ... 143s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 143s Selecting previously unselected package r-cran-littler. 143s Preparing to unpack .../230-r-cran-littler_0.3.19-1_arm64.deb ... 143s Unpacking r-cran-littler (0.3.19-1) ... 143s Selecting previously unselected package r-cran-pkgkitten. 143s Preparing to unpack .../231-r-cran-pkgkitten_0.2.3-1_all.deb ... 143s Unpacking r-cran-pkgkitten (0.2.3-1) ... 143s Selecting previously unselected package r-cran-rcpp. 143s Preparing to unpack .../232-r-cran-rcpp_1.0.12-1_arm64.deb ... 143s Unpacking r-cran-rcpp (1.0.12-1) ... 143s Selecting previously unselected package r-cran-later. 143s Preparing to unpack .../233-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 143s Unpacking r-cran-later (1.3.2+dfsg-1) ... 143s Selecting previously unselected package r-cran-promises. 143s Preparing to unpack .../234-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 143s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 143s Selecting previously unselected package r-cran-httpuv. 143s Preparing to unpack .../235-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 143s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 143s Selecting previously unselected package r-cran-xtable. 143s Preparing to unpack .../236-r-cran-xtable_1%3a1.8-4-2_all.deb ... 143s Unpacking r-cran-xtable (1:1.8-4-2) ... 143s Selecting previously unselected package r-cran-sourcetools. 143s Preparing to unpack .../237-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 143s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 143s Selecting previously unselected package r-cran-commonmark. 143s Preparing to unpack .../238-r-cran-commonmark_1.9.1-1_arm64.deb ... 143s Unpacking r-cran-commonmark (1.9.1-1) ... 143s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 143s Preparing to unpack .../239-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 143s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 143s Selecting previously unselected package r-cran-shiny. 143s Preparing to unpack .../240-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 143s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 143s Selecting previously unselected package r-cran-rmarkdown. 143s Preparing to unpack .../241-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 143s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 144s Selecting previously unselected package r-cran-bookdown. 144s Preparing to unpack .../242-r-cran-bookdown_0.37+dfsg-1_all.deb ... 144s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 144s Selecting previously unselected package r-cran-biocmanager. 144s Preparing to unpack .../243-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 144s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 144s Selecting previously unselected package tex-common. 144s Preparing to unpack .../244-tex-common_6.18_all.deb ... 144s Unpacking tex-common (6.18) ... 144s Selecting previously unselected package t1utils. 144s Preparing to unpack .../245-t1utils_1.41-4build2_arm64.deb ... 144s Unpacking t1utils (1.41-4build2) ... 144s Selecting previously unselected package texlive-binaries. 144s Preparing to unpack .../246-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 144s Unpacking texlive-binaries (2023.20230311.66589-9) ... 144s Selecting previously unselected package texlive-base. 144s Preparing to unpack .../247-texlive-base_2023.20240207-1_all.deb ... 144s Unpacking texlive-base (2023.20240207-1) ... 145s Selecting previously unselected package texlive-latex-base. 145s Preparing to unpack .../248-texlive-latex-base_2023.20240207-1_all.deb ... 145s Unpacking texlive-latex-base (2023.20240207-1) ... 146s Selecting previously unselected package texlive-bibtex-extra. 146s Preparing to unpack .../249-texlive-bibtex-extra_2023.20240207-1_all.deb ... 146s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 148s Selecting previously unselected package r-bioc-biocstyle. 148s Preparing to unpack .../250-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 148s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 148s Selecting previously unselected package r-cran-xml. 148s Preparing to unpack .../251-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 148s Unpacking r-cran-xml (3.99-0.16.1-1) ... 148s Selecting previously unselected package r-cran-hms. 148s Preparing to unpack .../252-r-cran-hms_1.1.3-1_all.deb ... 148s Unpacking r-cran-hms (1.1.3-1) ... 148s Selecting previously unselected package r-cran-prettyunits. 148s Preparing to unpack .../253-r-cran-prettyunits_1.2.0-1_all.deb ... 148s Unpacking r-cran-prettyunits (1.2.0-1) ... 148s Selecting previously unselected package r-cran-progress. 149s Preparing to unpack .../254-r-cran-progress_1.2.3-1_all.deb ... 149s Unpacking r-cran-progress (1.2.3-1) ... 149s Selecting previously unselected package r-cran-xml2. 149s Preparing to unpack .../255-r-cran-xml2_1.3.6-1_arm64.deb ... 149s Unpacking r-cran-xml2 (1.3.6-1) ... 149s Selecting previously unselected package r-bioc-biomart. 149s Preparing to unpack .../256-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 149s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 149s Selecting previously unselected package r-cran-lattice. 149s Preparing to unpack .../257-r-cran-lattice_0.22-5-1_arm64.deb ... 149s Unpacking r-cran-lattice (0.22-5-1) ... 149s Selecting previously unselected package r-cran-matrix. 149s Preparing to unpack .../258-r-cran-matrix_1.6-5-1_arm64.deb ... 149s Unpacking r-cran-matrix (1.6-5-1) ... 149s Selecting previously unselected package r-cran-matrixstats. 149s Preparing to unpack .../259-r-cran-matrixstats_1.2.0-1_arm64.deb ... 149s Unpacking r-cran-matrixstats (1.2.0-1) ... 149s Selecting previously unselected package r-bioc-matrixgenerics. 149s Preparing to unpack .../260-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 149s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 149s Selecting previously unselected package r-cran-abind. 149s Preparing to unpack .../261-r-cran-abind_1.4-5-2_all.deb ... 149s Unpacking r-cran-abind (1.4-5-2) ... 149s Selecting previously unselected package r-bioc-s4arrays. 149s Preparing to unpack .../262-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 149s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 149s Selecting previously unselected package r-bioc-sparsearray. 149s Preparing to unpack .../263-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 149s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 149s Selecting previously unselected package r-bioc-delayedarray. 150s Preparing to unpack .../264-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 150s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 150s Selecting previously unselected package r-cran-statmod. 150s Preparing to unpack .../265-r-cran-statmod_1.5.0-1_arm64.deb ... 150s Unpacking r-cran-statmod (1.5.0-1) ... 150s Selecting previously unselected package r-bioc-limma. 150s Preparing to unpack .../266-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 150s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 150s Selecting previously unselected package r-cran-locfit. 150s Preparing to unpack .../267-r-cran-locfit_1.5-9.8-1_arm64.deb ... 150s Unpacking r-cran-locfit (1.5-9.8-1) ... 150s Selecting previously unselected package r-bioc-edger. 150s Preparing to unpack .../268-r-bioc-edger_4.0.16+dfsg-1_arm64.deb ... 150s Unpacking r-bioc-edger (4.0.16+dfsg-1) ... 150s Selecting previously unselected package r-bioc-genomicranges. 150s Preparing to unpack .../269-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 150s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 150s Selecting previously unselected package r-bioc-summarizedexperiment. 150s Preparing to unpack .../270-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 150s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 150s Selecting previously unselected package r-bioc-rhtslib. 150s Preparing to unpack .../271-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 150s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 150s Selecting previously unselected package r-bioc-rsamtools. 151s Preparing to unpack .../272-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 151s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 151s Selecting previously unselected package r-bioc-genomicalignments. 151s Preparing to unpack .../273-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 151s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 151s Selecting previously unselected package r-cran-rjson. 151s Preparing to unpack .../274-r-cran-rjson_0.2.21-1_arm64.deb ... 151s Unpacking r-cran-rjson (0.2.21-1) ... 151s Selecting previously unselected package r-cran-restfulr. 151s Preparing to unpack .../275-r-cran-restfulr_0.0.15-1_arm64.deb ... 151s Unpacking r-cran-restfulr (0.0.15-1) ... 151s Selecting previously unselected package r-bioc-rtracklayer. 151s Preparing to unpack .../276-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 151s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 151s Selecting previously unselected package r-bioc-genomicfeatures. 151s Preparing to unpack .../277-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 151s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 151s Selecting previously unselected package r-cran-mass. 151s Preparing to unpack .../278-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 151s Unpacking r-cran-mass (7.3-60.0.1-1) ... 151s Selecting previously unselected package r-bioc-grohmm. 151s Preparing to unpack .../279-r-bioc-grohmm_1.36.0-1_arm64.deb ... 151s Unpacking r-bioc-grohmm (1.36.0-1) ... 151s Selecting previously unselected package r-bioc-org.hs.eg.db. 151s Preparing to unpack .../280-r-bioc-org.hs.eg.db_3.18.0-1_all.deb ... 151s Unpacking r-bioc-org.hs.eg.db (3.18.0-1) ... 153s Selecting previously unselected package autopkgtest-satdep. 153s Preparing to unpack .../281-1-autopkgtest-satdep.deb ... 153s Unpacking autopkgtest-satdep (0) ... 153s Setting up libjs-json (0~20221030+~1.0.8-1) ... 153s Setting up javascript-common (11+nmu1) ... 153s Setting up libgraphite2-3:arm64 (1.3.14-2) ... 153s Setting up libpixman-1-0:arm64 (0.42.2-1) ... 153s Setting up libsharpyuv0:arm64 (1.3.2-0.4) ... 153s Setting up libpaper1:arm64 (1.1.29) ... 154s 154s Creating config file /etc/papersize with new version 154s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 154s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 154s Setting up libxpm4:arm64 (1:3.5.17-1) ... 154s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 154s Setting up libxi6:arm64 (2:1.8.1-1) ... 154s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 154s Setting up libdatrie1:arm64 (0.2.13-3) ... 154s Setting up libjs-popper.js (1.16.1+ds-6) ... 154s Setting up libtirpc3t64:arm64 (1.3.4+ds-1.1) ... 154s Setting up libxcb-render0:arm64 (1.15-1) ... 154s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 154s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 154s Setting up libjs-lunr (2.3.9~dfsg-2) ... 154s Setting up unzip (6.0-28ubuntu3) ... 154s Setting up liblatex-tounicode-perl (0.54-2) ... 154s Setting up x11-common (1:7.7+23ubuntu2) ... 154s Setting up node-html5shiv (3.7.3+dfsg-5) ... 154s Setting up libpsl5t64:arm64 (0.21.2-1.1) ... 154s Setting up libdeflate0:arm64 (1.19-1) ... 154s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 154s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 154s Setting up libxcb-shm0:arm64 (1.15-1) ... 154s Setting up libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 154s Setting up libpaper-utils (1.1.29) ... 154s Setting up libgomp1:arm64 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155s update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode 155s Setting up libcc1-0:arm64 (14-20240303-1ubuntu1) ... 155s Setting up liblsan0:arm64 (14-20240303-1ubuntu1) ... 155s Setting up libblas-dev:arm64 (3.12.0-3) ... 155s update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode 155s Setting up dctrl-tools (2.24-3build2) ... 155s Setting up libjs-bootstrap (3.4.1+dfsg-3) ... 155s Setting up libitm1:arm64 (14-20240303-1ubuntu1) ... 155s Setting up libsynctex2:arm64 (2023.20230311.66589-9) ... 155s Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... 155s Setting up libpotrace0:arm64 (1.16-2) ... 155s Setting up libjpeg8:arm64 (8c-2ubuntu11) ... 155s Setting up libice6:arm64 (2:1.0.10-1build2) ... 155s Setting up liblapack3:arm64 (3.12.0-3) ... 155s update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide 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up pkg-config:arm64 (1.8.1-2) ... 155s Setting up libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 155s Setting up libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 155s Setting up libc6-dev:arm64 (2.39-0ubuntu2) ... 155s Setting up curl (8.5.0-2ubuntu7) ... 155s Setting up libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 155s Setting up libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 155s Setting up libsm6:arm64 (2:1.2.3-1build2) ... 155s Setting up libicu-dev:arm64 (74.2-1ubuntu1) ... 155s Setting up libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 155s Setting up libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 155s Setting up fontconfig (2.15.0-1ubuntu1) ... 157s Regenerating fonts cache... done. 157s Setting up libjpeg-turbo8-dev:arm64 (2.1.5-2ubuntu1) ... 157s Setting up libxft2:arm64 (2.3.6-1) ... 157s Setting up libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 157s Setting up libncurses-dev:arm64 (6.4+20240113-1ubuntu1) ... 157s Setting up libpcre2-dev:arm64 (10.42-4ubuntu1) ... 157s Setting up cpp-13 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up r-bioc-biocio (1.12.0+dfsg-1) ... 160s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 160s Setting up texlive-bibtex-extra (2023.20240207-1) ... 160s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 160s Setting up r-cran-httr (1.4.7+dfsg-1) ... 160s Setting up r-cran-hms (1.1.3-1) ... 160s Setting up r-cran-memoise (2.0.1-1) ... 160s Setting up r-cran-promises (1.2.1+dfsg-1) ... 160s Setting up r-cran-purrr (1.0.2-1) ... 160s Setting up r-cran-blob (1.2.4-1) ... 160s Setting up r-cran-htmltools (0.5.7-1) ... 160s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 160s Setting up r-bioc-xvector (0.42.0-1) ... 160s Setting up r-cran-sass (0.4.8+dfsg-1) ... 160s Setting up r-cran-dplyr (1.1.4-1) ... 160s Setting up r-cran-rsqlite (2.3.4-1) ... 160s Setting up r-cran-progress (1.2.3-1) ... 160s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 160s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 160s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 160s Setting up r-bioc-biostrings 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(1.54.1+dfsg-1) ... 160s Setting up r-bioc-grohmm (1.36.0-1) ... 160s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 160s Setting up autopkgtest-satdep (0) ... 160s Processing triggers for man-db (2.12.0-3) ... 161s Processing triggers for install-info (7.1-3) ... 161s Processing triggers for libc-bin (2.39-0ubuntu2) ... 161s Processing triggers for tex-common (6.18) ... 161s Running updmap-sys. This may take some time... done. 161s Running mktexlsr /var/lib/texmf ... done. 161s Building format(s) --all. 197s This may take some time... done. 210s (Reading database ... 124135 files and directories currently installed.) 210s Removing autopkgtest-satdep (0) ... 211s autopkgtest [17:37:10]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 211s autopkgtest [17:37:10]: test pkg-r-autopkgtest: [----------------------- 211s Test: Try to load the R library groHMM 212s 212s R version 4.3.3 (2024-02-29) -- "Angel Food Cake" 212s Copyright (C) 2024 The R Foundation for Statistical Computing 212s Platform: aarch64-unknown-linux-gnu (64-bit) 212s 212s R is free software and comes with ABSOLUTELY NO WARRANTY. 212s You are welcome to redistribute it under certain conditions. 212s Type 'license()' or 'licence()' for distribution details. 212s 212s R is a collaborative project with many contributors. 212s Type 'contributors()' for more information and 212s 'citation()' on how to cite R or R packages in publications. 212s 212s Type 'demo()' for some demos, 'help()' for on-line help, or 212s 'help.start()' for an HTML browser interface to help. 212s Type 'q()' to quit R. 212s 212s > library('groHMM') 212s Loading required package: MASS 212s Loading required package: parallel 212s Loading required package: S4Vectors 212s Loading required package: stats4 212s Loading required package: BiocGenerics 212s 212s Attaching package: ‘BiocGenerics’ 212s 212s The following objects are masked from ‘package:stats’: 212s 212s IQR, mad, sd, var, xtabs 212s 212s The following objects are masked from ‘package:base’: 212s 212s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 212s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 212s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 212s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 212s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 212s table, tapply, union, unique, unsplit, which.max, which.min 212s 212s 212s Attaching package: ‘S4Vectors’ 212s 212s The following object is masked from ‘package:utils’: 212s 212s findMatches 212s 212s The following objects are masked from ‘package:base’: 212s 212s expand.grid, I, unname 212s 212s Loading required package: IRanges 213s Loading required package: GenomeInfoDb 213s Loading required package: GenomicRanges 214s Loading required package: GenomicAlignments 214s Loading required package: SummarizedExperiment 214s Loading required package: MatrixGenerics 214s Loading required package: matrixStats 214s 214s Attaching package: ‘MatrixGenerics’ 214s 214s The following objects are masked from ‘package:matrixStats’: 214s 214s colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse, 214s colCounts, colCummaxs, colCummins, colCumprods, colCumsums, 214s colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs, 214s colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats, 214s colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds, 214s colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads, 214s colWeightedMeans, colWeightedMedians, colWeightedSds, 214s colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet, 214s rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods, 214s rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps, 214s rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins, 214s rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks, 214s rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars, 214s rowWeightedMads, rowWeightedMeans, rowWeightedMedians, 214s rowWeightedSds, rowWeightedVars 214s 214s Loading required package: Biobase 214s Welcome to Bioconductor 214s 214s Vignettes contain introductory material; view with 214s 'browseVignettes()'. To cite Bioconductor, see 214s 'citation("Biobase")', and for packages 'citation("pkgname")'. 214s 214s 214s Attaching package: ‘Biobase’ 214s 214s The following object is masked from ‘package:MatrixGenerics’: 214s 214s rowMedians 214s 214s The following objects are masked from ‘package:matrixStats’: 214s 214s anyMissing, rowMedians 214s 217s Loading required package: Biostrings 217s Loading required package: XVector 218s 218s Attaching package: ‘Biostrings’ 218s 218s The following object is masked from ‘package:base’: 218s 218s strsplit 218s 218s Loading required package: Rsamtools 219s Loading required package: rtracklayer 220s > 220s > 220s Other tests are currently unsupported! 220s They will be progressively added. 220s autopkgtest [17:37:19]: test pkg-r-autopkgtest: -----------------------] 221s autopkgtest [17:37:20]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 221s pkg-r-autopkgtest PASS 221s autopkgtest [17:37:20]: @@@@@@@@@@@@@@@@@@@@ summary 221s pkg-r-autopkgtest PASS 239s Creating nova instance adt-noble-arm64-r-bioc-grohmm-20240316-173339-juju-7f2275-prod-proposed-migration-environment-2 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...