0s autopkgtest [13:49:37]: starting date and time: 2024-03-16 13:49:37+0000 0s autopkgtest [13:49:37]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:49:37]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.lg3bdh9v/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-variantannotation,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-ggbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-variantannotation/1.48.1-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-ggbio-20240316-134937-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 85s autopkgtest [13:51:02]: testbed dpkg architecture: arm64 85s autopkgtest [13:51:02]: testbed apt version: 2.7.12 85s autopkgtest [13:51:02]: @@@@@@@@@@@@@@@@@@@@ test bed setup 86s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 86s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 86s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 86s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 86s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 86s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 86s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 86s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 86s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 86s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 87s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 87s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 87s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 88s Fetched 9092 kB in 2s (5450 kB/s) 89s Reading package lists... 92s Reading package lists... 93s Building dependency tree... 93s Reading state information... 93s Calculating upgrade... 93s The following packages will be REMOVED: 93s libssl3 93s The following NEW packages will be installed: 93s libssl3t64 93s The following packages have been kept back: 93s curl 93s The following packages will be upgraded: 93s openssl ubuntu-minimal ubuntu-standard 94s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 94s Need to get 2775 kB of archives. 94s After this operation, 72.7 kB of additional disk space will be used. 94s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 95s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 95s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 95s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 96s Fetched 2775 kB in 1s (2610 kB/s) 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 96s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 96s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 96s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 96s wget depends on libssl3 (>= 3.0.0). 96s u-boot-tools depends on libssl3 (>= 3.0.0). 96s tnftp depends on libssl3 (>= 3.0.0). 96s tcpdump depends on libssl3 (>= 3.0.0). 96s systemd-resolved depends on libssl3 (>= 3.0.0). 96s systemd depends on libssl3 (>= 3.0.0). 96s sudo depends on libssl3 (>= 3.0.0). 96s sbsigntool depends on libssl3 (>= 3.0.0). 96s rsync depends on libssl3 (>= 3.0.0). 96s python3-cryptography depends on libssl3 (>= 3.0.0). 96s openssh-server depends on libssl3 (>= 3.0.10). 96s openssh-client depends on libssl3 (>= 3.0.10). 96s mtd-utils depends on libssl3 (>= 3.0.0). 96s mokutil depends on libssl3 (>= 3.0.0). 96s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 96s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 96s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 96s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 96s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 96s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 96s libnvme1 depends on libssl3 (>= 3.0.0). 96s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 96s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 96s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 96s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 96s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 96s kmod depends on libssl3 (>= 3.0.0). 96s dhcpcd-base depends on libssl3 (>= 3.0.0). 96s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 96s 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 96s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 96s Selecting previously unselected package libssl3t64:arm64. 96s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 96s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 96s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 96s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 96s Unpacking ubuntu-minimal (1.536) over (1.535) ... 96s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 96s Unpacking ubuntu-standard (1.536) over (1.535) ... 96s Setting up ubuntu-minimal (1.536) ... 96s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 96s Setting up ubuntu-standard (1.536) ... 96s Setting up openssl (3.0.13-0ubuntu1) ... 96s Processing triggers for man-db (2.12.0-3) ... 97s Processing triggers for libc-bin (2.39-0ubuntu2) ... 97s Reading package lists... 98s Building dependency tree... 98s Reading state information... 98s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 99s sh: Attempting to set up Debian/Ubuntu apt sources automatically 99s sh: Distribution appears to be Ubuntu 100s Reading package lists... 100s Building dependency tree... 100s Reading state information... 101s eatmydata is already the newest version (131-1). 101s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 101s Reading package lists... 101s Building dependency tree... 101s Reading state information... 102s dbus is already the newest version (1.14.10-4ubuntu1). 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Reading package lists... 102s Building dependency tree... 102s Reading state information... 103s rng-tools-debian is already the newest version (2.4). 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Reading package lists... 103s Building dependency tree... 103s Reading state information... 104s The following packages will be REMOVED: 104s cloud-init* python3-configobj* python3-debconf* 105s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 105s After this operation, 3252 kB disk space will be freed. 105s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 105s Removing cloud-init (24.1.1-0ubuntu1) ... 106s Removing python3-configobj (5.0.8-3) ... 107s Removing python3-debconf (1.5.86) ... 107s Processing triggers for man-db (2.12.0-3) ... 107s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 107s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 108s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 108s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 108s invoke-rc.d: policy-rc.d denied execution of try-restart. 108s Reading package lists... 108s Building dependency tree... 108s Reading state information... 109s linux-generic is already the newest version (6.8.0-11.11+1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Reading package lists... 112s Reading package lists... 112s Building dependency tree... 112s Reading state information... 112s Calculating upgrade... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s autopkgtest [13:51:31]: rebooting testbed after setup commands that affected boot 333s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 340s autopkgtest [13:55:17]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 344s autopkgtest [13:55:21]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ggbio 346s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (dsc) [2564 B] 346s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (tar) [3252 kB] 346s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (diff) [5428 B] 347s gpgv: Signature made Fri Dec 8 14:52:19 2023 UTC 347s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 347s gpgv: issuer "tille@debian.org" 347s gpgv: Can't check signature: No public key 347s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.50.0-1.dsc: no acceptable signature found 347s autopkgtest [13:55:24]: testing package r-bioc-ggbio version 1.50.0-1 347s autopkgtest [13:55:24]: build not needed 349s autopkgtest [13:55:26]: test pkg-r-autopkgtest: preparing testbed 350s Reading package lists... 350s Building dependency tree... 350s Reading state information... 351s Starting pkgProblemResolver with broken count: 0 351s Starting 2 pkgProblemResolver with broken count: 0 351s Done 351s The following additional packages will be installed: 351s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 351s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 351s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 351s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 351s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 351s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 351s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 351s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 351s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 351s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 351s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 351s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 351s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 351s libjs-highlight.js libjs-jquery libjs-jquery-datatables 351s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 351s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 351s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 351s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 351s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 351s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 351s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 351s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 351s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 351s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 351s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 351s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 351s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 351s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 351s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 351s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 351s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 351s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 351s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 351s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 351s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 351s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 351s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 351s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 351s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 351s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 351s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 351s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 351s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 351s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 351s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 351s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 351s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 351s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 351s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 351s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 351s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 351s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 351s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 351s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 351s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 351s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 351s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 351s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 351s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 351s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 351s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 351s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 351s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 351s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 351s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 351s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 351s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 351s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 351s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 351s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 351s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 351s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 351s xdg-utils zip zlib1g-dev 351s Suggested packages: 351s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 351s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 351s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 351s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 351s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 351s libboost-context1.83-dev libboost-contract1.83-dev 351s libboost-coroutine1.83-dev libboost-date-time1.83-dev 351s libboost-exception1.83-dev libboost-fiber1.83-dev 351s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 351s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 351s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 351s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 351s libboost-numpy1.83-dev libboost-program-options1.83-dev 351s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 351s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 351s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 351s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 351s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 351s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 351s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 351s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 351s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 351s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 351s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 351s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 351s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-all r-bioc-affy 351s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 351s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 351s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 351s r-bioc-gviz r-bioc-annotationhub r-cran-r.utils r-bioc-edger r-cran-markdown 351s r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats r-bioc-limma 351s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 351s r-cran-aer r-cran-bbmle r-cran-boot r-cran-car r-cran-cardata r-cran-caret 351s r-cran-cmprsk r-cran-coda r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam 351s r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-irlba r-cran-ks 351s r-cran-lavaan r-cran-leaps r-cran-lme4 r-cran-lmtest r-cran-lsmeans 351s r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata r-cran-multcomp 351s r-cran-network r-cran-ordinal r-cran-plm r-cran-psych r-cran-quantreg 351s r-cran-robust r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-sp 351s r-cran-spdep r-cran-spatialreg r-cran-spelling r-cran-survey 351s r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-kernsmooth r-cran-kernlab 351s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip 351s r-cran-lubridate r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 351s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 351s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench 351s r-cran-here debhelper ghostscript gv | postscript-viewer perl-tk xpdf 351s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 351s wp2latex 351s Recommended packages: 351s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 351s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 351s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 351s r-cran-covr r-cran-brms r-cran-broom.mixed r-cran-cmprsk r-cran-effects 351s r-cran-emmeans r-cran-gam r-cran-gee r-cran-geepack r-cran-ggeffects 351s r-cran-glmmtmb r-cran-lavaan r-cran-lme4 r-cran-mice r-cran-ordinal 351s r-cran-parameters r-cran-plm r-cran-pscl r-cran-rstanarm r-cran-spelling 351s r-cran-survey r-cran-vgam r-cran-thematic r-cran-cliapp r-cran-mockery 351s r-cran-fastmatch r-cran-devtools r-cran-tinytest r-cran-whoami r-cran-bench 351s r-cran-decor r-cran-lobstr r-cran-webutils r-cran-r.utils r-cran-xts 351s r-cran-nanotime r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-rmysql 351s r-cran-unitizer r-cran-rsvg r-cran-geosphere r-cran-ggforce r-cran-igraph 351s r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network r-cran-sna 351s r-cran-roxygen2 r-cran-crosstalk r-cran-vdiffr r-cran-hexbin r-cran-multcomp 351s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite 351s r-cran-reshape r-cran-cairo r-cran-markdown r-cran-r.rsp r-cran-gridsvg 351s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 351s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-tidyverse 351s r-cran-r.devices r-cran-sodium r-cran-gridgraphics r-cran-lubridate 351s r-cran-mathjaxr r-cran-mockr r-cran-doparallel r-cran-foreach 351s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-future r-cran-pingr 351s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 351s r-cran-rvest r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 351s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 351s x11-utils x11-xserver-utils 351s The following NEW packages will be installed: 351s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 351s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 351s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 351s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 351s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 351s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 351s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 351s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 351s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 351s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 351s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 351s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 351s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 351s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 351s libjs-highlight.js libjs-jquery libjs-jquery-datatables 351s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 351s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 351s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 351s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 351s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 351s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 351s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 351s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 351s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 351s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 351s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 351s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 351s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 351s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 351s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 351s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 351s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 351s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 351s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 351s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 351s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 351s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 351s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 351s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 351s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 351s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 351s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 351s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 351s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 351s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 351s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 351s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 351s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 351s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 351s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 351s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 351s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 351s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 351s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 351s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 351s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 351s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 351s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 351s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 351s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 351s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 351s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 351s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 351s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 351s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 351s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 351s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 351s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 351s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 351s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 351s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 351s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 351s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 351s xdg-utils zip zlib1g-dev 352s 0 upgraded, 349 newly installed, 0 to remove and 0 not upgraded. 352s Need to get 493 MB/493 MB of archives. 352s After this operation, 1460 MB of additional disk space will be used. 352s Get:1 /tmp/autopkgtest.VVbPm8/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [756 B] 352s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 352s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 352s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 352s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 352s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 352s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 352s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 352s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 352s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 352s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 352s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 352s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 352s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 352s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 352s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 352s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 352s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 352s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 353s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 353s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 353s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 353s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 353s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 353s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 353s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 353s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 353s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 353s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 353s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 354s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 354s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 354s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 354s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 354s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 354s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 354s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 354s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 354s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 354s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 354s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 354s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 354s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 354s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 354s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 354s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 354s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 354s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 354s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 354s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 354s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 354s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 354s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 354s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 354s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 354s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 354s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 354s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 354s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 354s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 354s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 354s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 354s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 354s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 354s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 354s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 354s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 354s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 354s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 355s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 355s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 355s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 355s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 355s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 355s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 355s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 355s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 355s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 355s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 355s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 355s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 355s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 355s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 355s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 355s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 355s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 355s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 355s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 355s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 355s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 355s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 355s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 355s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 355s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 355s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 355s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 355s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 355s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 355s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 355s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 355s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 355s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 355s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 356s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 356s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 356s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 356s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 356s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 356s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 356s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 356s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 356s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 356s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 356s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 356s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 356s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 356s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 356s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 356s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 356s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 356s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 356s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 356s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 356s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 356s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 356s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 356s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 356s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 356s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 356s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 356s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 356s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 356s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 356s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 356s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 356s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 356s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 358s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 358s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 358s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 358s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 358s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 358s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 358s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 359s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 359s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 359s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 359s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 359s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 359s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 359s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 359s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 359s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 359s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 359s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 359s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 359s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 359s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 359s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 359s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 359s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 359s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 359s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 359s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 359s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 359s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 359s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 359s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 359s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 359s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 359s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 359s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 359s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 359s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 359s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 359s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 359s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 359s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 359s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 359s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 359s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 359s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 359s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 359s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 360s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 360s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 360s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 360s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 360s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 361s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 361s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 361s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 361s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 361s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 361s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 361s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 361s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 361s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 361s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 361s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 361s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 361s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 361s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 361s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 361s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 361s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 362s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 362s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 362s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 362s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 362s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 362s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 362s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 362s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 362s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 362s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 362s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 362s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 362s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 362s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 362s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 362s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 362s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 362s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 362s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 362s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 362s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 362s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 362s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 362s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 362s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 362s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 362s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 362s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 362s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 362s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 362s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 362s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 362s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 362s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 362s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 362s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 362s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 362s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 362s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 362s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 362s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 362s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 362s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 362s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 362s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 362s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 363s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 363s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 365s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 365s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 365s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 365s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 365s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 365s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 365s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 365s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 365s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 365s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 365s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 365s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 365s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 365s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 365s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 365s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 365s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 365s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 365s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 365s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 365s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 365s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 365s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 365s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 366s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 366s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 366s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 366s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 366s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 366s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 366s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 366s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 366s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 366s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 366s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 366s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 366s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 366s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 366s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 366s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 366s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 366s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 366s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 366s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 366s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 366s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 366s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 366s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 366s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 366s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 366s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 367s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 367s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 367s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 367s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 367s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 367s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 367s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 367s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 367s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 367s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 368s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 368s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 368s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 368s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 368s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 368s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 368s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 368s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 368s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 368s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 368s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 368s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 368s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 368s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 368s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 368s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 368s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 368s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 368s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 368s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 368s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 368s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 368s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 368s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 368s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 368s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 368s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 368s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 368s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 368s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 368s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 368s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 368s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 368s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 370s Preconfiguring packages ... 370s Fetched 493 MB in 17s (29.1 MB/s) 370s Selecting previously unselected package libc-dev-bin. 370s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 370s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 370s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 370s Selecting previously unselected package linux-libc-dev:arm64. 370s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 370s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 371s Selecting previously unselected package libcrypt-dev:arm64. 371s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 371s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 371s Selecting previously unselected package libtirpc-dev:arm64. 371s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 371s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 371s Selecting previously unselected package libnsl-dev:arm64. 371s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 371s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 371s Selecting previously unselected package rpcsvc-proto. 371s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 371s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 371s Selecting previously unselected package libc6-dev:arm64. 371s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 371s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 371s Selecting previously unselected package libisl23:arm64. 371s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 371s Unpacking libisl23:arm64 (0.26-3) ... 371s Selecting previously unselected package libmpc3:arm64. 371s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 371s Unpacking libmpc3:arm64 (1.3.1-1) ... 371s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 371s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 371s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 371s Selecting previously unselected package cpp-13. 371s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 371s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 371s Selecting previously unselected package cpp-aarch64-linux-gnu. 371s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 371s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 371s Selecting previously unselected package cpp. 371s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 371s Unpacking cpp (4:13.2.0-7ubuntu1) ... 371s Selecting previously unselected package libcc1-0:arm64. 371s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 371s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 371s Selecting previously unselected package libgomp1:arm64. 371s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 371s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 371s Selecting previously unselected package libitm1:arm64. 371s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 371s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 371s Selecting previously unselected package libatomic1:arm64. 371s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 371s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 371s Selecting previously unselected package libasan8:arm64. 372s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 372s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 372s Selecting previously unselected package liblsan0:arm64. 372s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 372s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 372s Selecting previously unselected package libtsan2:arm64. 372s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 372s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 372s Selecting previously unselected package libubsan1:arm64. 372s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 372s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 372s Selecting previously unselected package libhwasan0:arm64. 372s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 372s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 372s Selecting previously unselected package libgcc-13-dev:arm64. 372s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 372s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 372s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 372s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 372s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 373s Selecting previously unselected package gcc-13. 373s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 373s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 373s Selecting previously unselected package gcc-aarch64-linux-gnu. 373s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 373s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 373s Selecting previously unselected package gcc. 373s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 373s Unpacking gcc (4:13.2.0-7ubuntu1) ... 373s Selecting previously unselected package libstdc++-13-dev:arm64. 373s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 373s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 374s Selecting previously unselected package g++-13-aarch64-linux-gnu. 374s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 374s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 374s Selecting previously unselected package g++-13. 374s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 374s Unpacking g++-13 (13.2.0-17ubuntu2) ... 374s Selecting previously unselected package g++-aarch64-linux-gnu. 374s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 374s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 374s Selecting previously unselected package g++. 374s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 374s Unpacking g++ (4:13.2.0-7ubuntu1) ... 374s Selecting previously unselected package build-essential. 374s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 374s Unpacking build-essential (12.10ubuntu1) ... 374s Selecting previously unselected package dctrl-tools. 374s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 374s Unpacking dctrl-tools (2.24-3build2) ... 374s Selecting previously unselected package fonts-dejavu-mono. 374s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 374s Unpacking fonts-dejavu-mono (2.37-8) ... 374s Selecting previously unselected package fonts-dejavu-core. 374s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 374s Unpacking fonts-dejavu-core (2.37-8) ... 374s Selecting previously unselected package fontconfig-config. 374s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 375s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 375s Selecting previously unselected package libfontconfig1:arm64. 375s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 375s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 375s Selecting previously unselected package fontconfig. 375s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 375s Unpacking fontconfig (2.15.0-1ubuntu1) ... 375s Selecting previously unselected package fonts-font-awesome. 375s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 375s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 375s Selecting previously unselected package fonts-glyphicons-halflings. 375s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 375s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 375s Selecting previously unselected package fonts-lmodern. 375s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 375s Unpacking fonts-lmodern (2.005-1) ... 375s Selecting previously unselected package fonts-mathjax. 375s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 375s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 375s Selecting previously unselected package libgfortran5:arm64. 375s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 375s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 375s Selecting previously unselected package libgfortran-13-dev:arm64. 375s Preparing to unpack .../044-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 375s Unpacking libgfortran-13-dev:arm64 (13.2.0-17ubuntu2) ... 375s Selecting previously unselected package gfortran-13-aarch64-linux-gnu. 375s Preparing to unpack .../045-gfortran-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 375s Unpacking gfortran-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 375s Selecting previously unselected package gfortran-13. 375s Preparing to unpack .../046-gfortran-13_13.2.0-17ubuntu2_arm64.deb ... 375s Unpacking gfortran-13 (13.2.0-17ubuntu2) ... 375s Selecting previously unselected package gfortran-aarch64-linux-gnu. 375s Preparing to unpack .../047-gfortran-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 375s Unpacking gfortran-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 375s Selecting previously unselected package gfortran. 375s Preparing to unpack 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Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 376s Selecting previously unselected package libblas3:arm64. 376s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 376s Unpacking libblas3:arm64 (3.12.0-3) ... 376s Selecting previously unselected package libblas-dev:arm64. 376s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 376s Unpacking libblas-dev:arm64 (3.12.0-3) ... 376s Selecting previously unselected package libboost1.83-dev:arm64. 376s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 376s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 378s Selecting previously unselected package libboost-dev:arm64. 378s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 378s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 378s Selecting previously unselected package libbz2-dev:arm64. 378s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 378s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 378s Selecting previously unselected package libpixman-1-0:arm64. 378s Preparing to unpack .../059-libpixman-1-0_0.42.2-1_arm64.deb ... 378s Unpacking libpixman-1-0:arm64 (0.42.2-1) ... 378s Selecting previously unselected package libxcb-render0:arm64. 378s Preparing to unpack .../060-libxcb-render0_1.15-1_arm64.deb ... 378s Unpacking libxcb-render0:arm64 (1.15-1) ... 378s Selecting previously unselected package libxcb-shm0:arm64. 378s Preparing to unpack .../061-libxcb-shm0_1.15-1_arm64.deb ... 378s Unpacking libxcb-shm0:arm64 (1.15-1) ... 378s Selecting previously unselected package libxrender1:arm64. 378s Preparing to unpack .../062-libxrender1_1%3a0.9.10-1.1_arm64.deb ... 378s Unpacking libxrender1:arm64 (1:0.9.10-1.1) ... 378s Selecting previously unselected package libcairo2:arm64. 378s Preparing to unpack .../063-libcairo2_1.18.0-1_arm64.deb ... 378s Unpacking libcairo2:arm64 (1.18.0-1) ... 378s Selecting previously unselected package libdatrie1:arm64. 378s Preparing to unpack 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unselected package libjpeg-dev:arm64. 379s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 379s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 379s Selecting previously unselected package libjs-bootstrap. 379s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 379s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 379s Selecting previously unselected package libjs-popper.js. 379s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 380s Unpacking libjs-popper.js (1.16.1+ds-6) ... 380s Selecting previously unselected package libjs-bootstrap4. 380s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 380s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 380s Selecting previously unselected package libjs-d3. 380s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 380s Unpacking libjs-d3 (3.5.17-4) ... 380s Selecting previously unselected package libjs-es5-shim. 380s Preparing to unpack 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libpcre2-posix3:arm64. 382s Preparing to unpack .../106-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 382s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 382s Selecting previously unselected package libpcre2-dev:arm64. 382s Preparing to unpack .../107-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 382s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 382s Selecting previously unselected package libpkgconf3:arm64. 382s Preparing to unpack .../108-libpkgconf3_1.8.1-2_arm64.deb ... 382s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 382s Selecting previously unselected package zlib1g-dev:arm64. 382s Preparing to unpack .../109-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 382s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 382s Selecting previously unselected package libpng-dev:arm64. 382s Preparing to unpack .../110-libpng-dev_1.6.43-1_arm64.deb ... 382s Unpacking libpng-dev:arm64 (1.6.43-1) ... 382s Selecting previously unselected package libpotrace0:arm64. 382s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 383s Selecting previously unselected package libtcl8.6:arm64. 383s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 383s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 383s Selecting previously unselected package libteckit0:arm64. 383s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 383s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 383s Selecting previously unselected package libtexlua53-5:arm64. 383s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 383s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 383s Selecting previously unselected package libjbig0:arm64. 383s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 383s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 383s Selecting previously unselected package libwebp7:arm64. 383s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 383s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 383s Selecting previously unselected package libtiff6:arm64. 383s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 383s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 383s Selecting previously unselected package libxft2:arm64. 383s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 383s Unpacking libxft2:arm64 (2.3.6-1) ... 383s Selecting previously unselected package libxss1:arm64. 383s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 383s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 383s Selecting previously unselected package libtk8.6:arm64. 383s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 383s Unpacking libtk8.6:arm64 (8.6.13-2) ... 383s Selecting previously unselected package libxt6:arm64. 383s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 383s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 383s Selecting previously unselected package libxmu6:arm64. 383s Preparing to unpack .../127-libxmu6_2%3a1.1.3-3_arm64.deb ... 383s Unpacking libxmu6:arm64 (2:1.1.3-3) ... 383s Selecting previously unselected package libxpm4:arm64. 383s Preparing to unpack .../128-libxpm4_1%3a3.5.17-1_arm64.deb ... 383s Unpacking libxpm4:arm64 (1:3.5.17-1) ... 383s Selecting previously unselected package libxaw7:arm64. 383s Preparing to unpack .../129-libxaw7_2%3a1.0.14-1_arm64.deb ... 383s Unpacking libxaw7:arm64 (2:1.0.14-1) ... 383s Selecting previously unselected package libxi6:arm64. 383s Preparing to unpack .../130-libxi6_2%3a1.8.1-1_arm64.deb ... 383s Unpacking libxi6:arm64 (2:1.8.1-1) ... 383s Selecting previously unselected package libzzip-0-13:arm64. 383s Preparing to unpack .../131-libzzip-0-13_0.13.72+dfsg.1-1.1_arm64.deb ... 383s Unpacking libzzip-0-13:arm64 (0.13.72+dfsg.1-1.1) ... 384s Selecting previously unselected package zip. 384s Preparing to unpack .../132-zip_3.0-13_arm64.deb ... 384s Unpacking zip (3.0-13) ... 384s Selecting previously unselected package unzip. 384s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 384s Unpacking unzip (6.0-28ubuntu3) ... 384s Selecting previously unselected package xdg-utils. 384s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 384s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 384s Selecting previously unselected package r-base-core. 384s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 384s Unpacking r-base-core (4.3.2-1build1) ... 384s Selecting previously unselected package r-cran-littler. 384s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 384s Unpacking r-cran-littler (0.3.19-1) ... 384s Selecting previously unselected package littler. 384s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 384s Unpacking littler (0.3.19-1) ... 385s Selecting previously unselected package node-bootstrap-sass. 385s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 385s Unpacking node-bootstrap-sass (3.4.3-2) ... 385s Selecting previously unselected package node-html5shiv. 385s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 385s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 385s Selecting previously unselected package node-normalize.css. 385s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 385s Unpacking node-normalize.css (8.0.1-5) ... 385s Selecting previously unselected package pandoc-data. 385s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 385s Unpacking pandoc-data (3.1.3-1) ... 385s Selecting previously unselected package pandoc. 385s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 385s Unpacking pandoc (3.1.3+ds-2) ... 387s Selecting previously unselected package pkgconf-bin. 387s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 387s Unpacking pkgconf-bin (1.8.1-2) ... 387s Selecting previously unselected package pkgconf:arm64. 387s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 387s Unpacking pkgconf:arm64 (1.8.1-2) ... 387s Selecting previously unselected package pkg-config:arm64. 387s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 387s Unpacking pkg-config:arm64 (1.8.1-2) ... 387s Selecting previously unselected package liblzma-dev:arm64. 387s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 387s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 387s Selecting previously unselected package r-base-dev. 387s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 387s Unpacking r-base-dev (4.3.2-1build1) ... 387s Selecting previously unselected package pkg-r-autopkgtest. 387s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 387s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 387s Selecting previously unselected package r-bioc-biocgenerics. 387s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 387s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 387s Selecting previously unselected package r-bioc-biobase. 387s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 387s Unpacking r-bioc-biobase (2.62.0-1) ... 387s Selecting previously unselected package r-bioc-s4vectors. 387s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 387s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 387s Selecting previously unselected package r-bioc-iranges. 388s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 388s Unpacking r-bioc-iranges (2.36.0-1) ... 388s Selecting previously unselected package r-cran-dbi. 388s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 388s Unpacking r-cran-dbi (1.2.2-1) ... 388s Selecting previously unselected package r-cran-bit. 388s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 388s Unpacking r-cran-bit (4.0.5-1) ... 388s Selecting previously unselected package r-cran-bit64. 388s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 388s Unpacking r-cran-bit64 (4.0.5-1) ... 388s Selecting previously unselected package r-cran-rlang. 388s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 388s Unpacking r-cran-rlang (1.1.3-1) ... 388s Selecting previously unselected package r-cran-cli. 388s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 388s Unpacking r-cran-cli (3.6.2-1) ... 388s Selecting previously unselected package r-cran-glue. 388s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 388s Unpacking r-cran-glue (1.7.0-1) ... 388s Selecting previously unselected package r-cran-lifecycle. 388s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 388s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 389s Selecting previously unselected package r-cran-vctrs. 389s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 389s Unpacking r-cran-vctrs (0.6.5-1) ... 389s Selecting previously unselected package r-cran-blob. 389s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 389s Unpacking r-cran-blob (1.2.4-1) ... 389s Selecting previously unselected package r-cran-fastmap. 389s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 389s Unpacking r-cran-fastmap (1.1.1-1) ... 389s Selecting previously unselected package r-cran-cachem. 389s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 389s Unpacking r-cran-cachem (1.0.8-1) ... 389s Selecting previously unselected package r-cran-memoise. 389s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 389s Unpacking r-cran-memoise (2.0.1-1) ... 389s Selecting previously unselected package r-cran-pkgconfig. 389s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 389s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 389s Selecting previously unselected package r-cran-plogr. 389s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 389s Unpacking r-cran-plogr (0.2.0-3build1) ... 389s Selecting previously unselected package r-cran-cpp11. 389s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 389s Unpacking r-cran-cpp11 (0.4.7-1) ... 389s Selecting previously unselected package r-cran-rsqlite. 389s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 389s Unpacking r-cran-rsqlite (2.3.4-1) ... 389s Selecting previously unselected package r-cran-curl. 390s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 390s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 390s Selecting previously unselected package r-cran-jsonlite. 390s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 390s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 390s Selecting previously unselected package r-cran-mime. 390s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 390s Unpacking r-cran-mime (0.12-1) ... 390s Selecting previously unselected package r-cran-sys. 390s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 390s Unpacking r-cran-sys (3.4.2-1) ... 390s Selecting previously unselected package r-cran-askpass. 390s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 390s Unpacking r-cran-askpass (1.2.0-1) ... 390s Selecting previously unselected package r-cran-openssl. 390s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 390s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 390s Selecting previously unselected package r-cran-r6. 391s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 391s Unpacking r-cran-r6 (2.5.1-1) ... 391s Selecting previously unselected package r-cran-httr. 391s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 391s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 391s Selecting previously unselected package r-cran-png. 391s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 391s Unpacking r-cran-png (0.1-8-1) ... 391s Selecting previously unselected package r-bioc-zlibbioc. 391s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 391s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 391s Selecting previously unselected package r-bioc-xvector. 392s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 392s Unpacking r-bioc-xvector (0.42.0-1) ... 392s Selecting previously unselected package r-cran-bitops. 392s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 392s Unpacking r-cran-bitops (1.0-7-1) ... 392s Selecting previously unselected package r-cran-rcurl. 392s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 392s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 392s Selecting previously unselected package r-bioc-genomeinfodbdata. 392s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 392s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 392s Selecting previously unselected package r-bioc-genomeinfodb. 392s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 392s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 392s Selecting previously unselected package r-cran-crayon. 393s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 393s Unpacking r-cran-crayon (1.5.2-1) ... 393s Selecting previously unselected package r-bioc-biostrings. 393s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 393s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 393s Selecting previously unselected package r-bioc-keggrest. 393s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 393s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 393s Selecting previously unselected package r-bioc-annotationdbi. 393s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 393s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 393s Selecting previously unselected package r-bioc-genomicranges. 393s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 393s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 393s Selecting previously unselected package r-cran-lazyeval. 393s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 393s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 394s Selecting previously unselected package r-bioc-annotationfilter. 394s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 394s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 394s Selecting previously unselected package r-cran-generics. 394s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 394s Unpacking r-cran-generics (0.1.3-1) ... 394s Selecting previously unselected package r-cran-magrittr. 394s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_arm64.deb ... 394s Unpacking r-cran-magrittr (2.0.3-1) ... 394s Selecting previously unselected package r-cran-fansi. 394s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_arm64.deb ... 394s Unpacking r-cran-fansi (1.0.5-1) ... 394s Selecting previously unselected package r-cran-utf8. 394s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_arm64.deb ... 394s Unpacking r-cran-utf8 (1.2.4-1) ... 394s Selecting previously unselected package r-cran-pillar. 394s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 394s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 394s Selecting previously unselected package r-cran-tibble. 394s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 394s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 394s Selecting previously unselected package r-cran-withr. 394s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 394s Unpacking r-cran-withr (2.5.0-1) ... 395s Selecting previously unselected package r-cran-tidyselect. 395s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 395s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-dplyr. 395s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_arm64.deb ... 395s Unpacking r-cran-dplyr (1.1.4-1) ... 395s Selecting previously unselected package r-cran-purrr. 395s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_arm64.deb ... 395s Unpacking r-cran-purrr (1.0.2-1) ... 395s Selecting previously unselected package r-cran-stringi. 395s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_arm64.deb ... 395s Unpacking r-cran-stringi (1.8.3-1) ... 395s Selecting previously unselected package r-cran-stringr. 395s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 395s Unpacking r-cran-stringr (1.5.1-1) ... 395s Selecting previously unselected package r-cran-tidyr. 395s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_arm64.deb ... 395s Unpacking r-cran-tidyr (1.3.1-1) ... 395s Selecting previously unselected package r-cran-dbplyr. 395s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 395s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-filelock. 395s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_arm64.deb ... 395s Unpacking r-cran-filelock (1.0.3-1) ... 395s Selecting previously unselected package r-bioc-biocfilecache. 395s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 395s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 395s Selecting previously unselected package r-bioc-biocio. 395s Preparing to unpack .../207-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 395s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 395s Selecting previously unselected package r-cran-formatr. 395s Preparing to unpack .../208-r-cran-formatr_1.14-1_all.deb ... 395s Unpacking r-cran-formatr (1.14-1) ... 395s Selecting previously unselected package r-cran-lambda.r. 395s Preparing to unpack .../209-r-cran-lambda.r_1.2.4-2build1_all.deb ... 395s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 395s Selecting previously unselected package r-cran-futile.options. 395s Preparing to unpack .../210-r-cran-futile.options_1.0.1-3build1_all.deb ... 395s Unpacking r-cran-futile.options (1.0.1-3build1) ... 395s Selecting previously unselected package r-cran-futile.logger. 395s Preparing to unpack .../211-r-cran-futile.logger_1.4.3-4build1_all.deb ... 395s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 395s Selecting previously unselected package r-cran-snow. 395s Preparing to unpack .../212-r-cran-snow_1%3a0.4.4-2_all.deb ... 395s Unpacking r-cran-snow (1:0.4.4-2) ... 395s Selecting previously unselected package r-cran-codetools. 395s Preparing to unpack .../213-r-cran-codetools_0.2-19-1_all.deb ... 395s Unpacking r-cran-codetools (0.2-19-1) ... 395s Selecting previously unselected package r-cran-bh. 395s Preparing to unpack .../214-r-cran-bh_1.84.0-1_all.deb ... 395s Unpacking r-cran-bh (1.84.0-1) ... 395s Selecting previously unselected package r-bioc-biocparallel. 395s Preparing to unpack .../215-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 395s Unpacking r-bioc-biocparallel (1.36.0-1) ... 395s Selecting previously unselected package r-cran-base64enc. 395s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_arm64.deb ... 395s Unpacking r-cran-base64enc (0.1-3-3) ... 396s Selecting previously unselected package r-cran-digest. 396s Preparing to unpack .../217-r-cran-digest_0.6.34-1_arm64.deb ... 396s Unpacking r-cran-digest (0.6.34-1) ... 396s Selecting previously unselected package r-cran-ellipsis. 396s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_arm64.deb ... 396s Unpacking r-cran-ellipsis (0.3.2-2) ... 396s Selecting previously unselected package r-cran-htmltools. 396s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_arm64.deb ... 396s Unpacking r-cran-htmltools (0.5.7-1) ... 396s Selecting previously unselected package r-cran-evaluate. 396s Preparing to unpack .../220-r-cran-evaluate_0.23-1_all.deb ... 396s Unpacking r-cran-evaluate (0.23-1) ... 396s Selecting previously unselected package r-cran-xfun. 396s Preparing to unpack .../221-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 396s Unpacking r-cran-xfun (0.41+dfsg-1) ... 396s Selecting previously unselected package r-cran-highr. 396s Preparing to unpack .../222-r-cran-highr_0.10+dfsg-1_all.deb ... 396s Unpacking r-cran-highr (0.10+dfsg-1) ... 396s Selecting previously unselected package r-cran-yaml. 396s Preparing to unpack .../223-r-cran-yaml_2.3.8-1_arm64.deb ... 396s Unpacking r-cran-yaml (2.3.8-1) ... 396s Selecting previously unselected package libjs-mathjax. 396s Preparing to unpack .../224-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 396s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 396s Selecting previously unselected package r-cran-knitr. 397s Preparing to unpack .../225-r-cran-knitr_1.45+dfsg-1_all.deb ... 397s Unpacking r-cran-knitr (1.45+dfsg-1) ... 397s Selecting previously unselected package r-cran-jquerylib. 397s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 397s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 397s Selecting previously unselected package r-cran-fs. 397s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 397s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 397s Selecting previously unselected package r-cran-rappdirs. 397s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_arm64.deb ... 397s Unpacking r-cran-rappdirs (0.3.3-1) ... 397s Selecting previously unselected package r-cran-sass. 397s Preparing to unpack .../229-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 397s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 397s Selecting previously unselected package r-cran-bslib. 397s Preparing to unpack .../230-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 397s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 397s Selecting previously unselected package r-cran-fontawesome. 397s Preparing to unpack .../231-r-cran-fontawesome_0.5.2-1_all.deb ... 397s Unpacking r-cran-fontawesome (0.5.2-1) ... 397s Selecting previously unselected package r-cran-tinytex. 397s Preparing to unpack .../232-r-cran-tinytex_0.49-1_all.deb ... 397s Unpacking r-cran-tinytex (0.49-1) ... 397s Selecting previously unselected package libjs-modernizr. 397s Preparing to unpack .../233-libjs-modernizr_2.6.2+ds1-5_all.deb ... 397s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 397s Selecting previously unselected package r-cran-pkgkitten. 397s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 397s Unpacking r-cran-pkgkitten (0.2.3-1) ... 397s Selecting previously unselected package r-cran-rcpp. 397s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_arm64.deb ... 397s Unpacking r-cran-rcpp (1.0.12-1) ... 398s Selecting previously unselected package r-cran-later. 398s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 398s Unpacking r-cran-later (1.3.2+dfsg-1) ... 398s Selecting previously unselected package r-cran-promises. 398s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 398s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 398s Selecting previously unselected package r-cran-httpuv. 398s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 398s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 398s Selecting previously unselected package r-cran-xtable. 398s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 398s Unpacking r-cran-xtable (1:1.8-4-2) ... 398s Selecting previously unselected package r-cran-sourcetools. 398s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 398s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 398s Selecting previously unselected package r-cran-commonmark. 398s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_arm64.deb ... 398s Unpacking r-cran-commonmark (1.9.1-1) ... 398s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 398s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 398s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 398s Selecting previously unselected package r-cran-shiny. 398s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 398s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 398s Selecting previously unselected package r-cran-rmarkdown. 398s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 398s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 398s Selecting previously unselected package r-cran-bookdown. 398s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 398s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 398s Selecting previously unselected package r-cran-biocmanager. 398s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 398s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 398s Selecting previously unselected package tex-common. 398s Preparing to unpack .../247-tex-common_6.18_all.deb ... 398s Unpacking tex-common (6.18) ... 399s Selecting previously unselected package t1utils. 399s Preparing to unpack .../248-t1utils_1.41-4build2_arm64.deb ... 399s Unpacking t1utils (1.41-4build2) ... 399s Selecting previously unselected package texlive-binaries. 399s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 399s Unpacking texlive-binaries (2023.20230311.66589-9) ... 399s Selecting previously unselected package texlive-base. 399s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 399s Unpacking texlive-base (2023.20240207-1) ... 400s Selecting previously unselected package texlive-latex-base. 401s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 401s Unpacking texlive-latex-base (2023.20240207-1) ... 401s Selecting previously unselected package texlive-bibtex-extra. 401s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 401s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 404s Selecting previously unselected package r-bioc-biocstyle. 404s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 404s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 404s Selecting previously unselected package r-cran-xml. 404s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 404s Unpacking r-cran-xml (3.99-0.16.1-1) ... 404s Selecting previously unselected package r-cran-hms. 404s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 404s Unpacking r-cran-hms (1.1.3-1) ... 404s Selecting previously unselected package r-cran-prettyunits. 404s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 404s Unpacking r-cran-prettyunits (1.2.0-1) ... 404s Selecting previously unselected package r-cran-progress. 404s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 404s Unpacking r-cran-progress (1.2.3-1) ... 404s Selecting previously unselected package r-cran-xml2. 404s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_arm64.deb ... 404s Unpacking r-cran-xml2 (1.3.6-1) ... 404s Selecting previously unselected package r-bioc-biomart. 404s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 404s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 404s Selecting previously unselected package r-cran-farver. 404s Preparing to unpack .../260-r-cran-farver_2.1.1-1_arm64.deb ... 404s Unpacking r-cran-farver (2.1.1-1) ... 404s Selecting previously unselected package r-cran-labeling. 404s Preparing to unpack .../261-r-cran-labeling_0.4.3-1_all.deb ... 404s Unpacking r-cran-labeling (0.4.3-1) ... 404s Selecting previously unselected package r-cran-colorspace. 404s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 404s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 404s Selecting previously unselected package r-cran-munsell. 404s Preparing to unpack .../263-r-cran-munsell_0.5.0-2build1_all.deb ... 404s Unpacking r-cran-munsell (0.5.0-2build1) ... 404s Selecting previously unselected package r-cran-rcolorbrewer. 404s Preparing to unpack .../264-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 404s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 404s Selecting previously unselected package r-cran-viridislite. 404s Preparing to unpack .../265-r-cran-viridislite_0.4.2-2_all.deb ... 404s Unpacking r-cran-viridislite (0.4.2-2) ... 404s Selecting previously unselected package r-cran-scales. 404s Preparing to unpack .../266-r-cran-scales_1.3.0-1_all.deb ... 404s Unpacking r-cran-scales (1.3.0-1) ... 404s Selecting previously unselected package r-cran-gtable. 405s Preparing to unpack .../267-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 405s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 405s Selecting previously unselected package r-cran-isoband. 405s Preparing to unpack .../268-r-cran-isoband_0.2.7-1_arm64.deb ... 405s Unpacking r-cran-isoband (0.2.7-1) ... 405s Selecting previously unselected package r-cran-mass. 405s Preparing to unpack .../269-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 405s Unpacking r-cran-mass (7.3-60.0.1-1) ... 405s Selecting previously unselected package r-cran-lattice. 405s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 405s Unpacking r-cran-lattice (0.22-5-1) ... 405s Selecting previously unselected package r-cran-nlme. 405s Preparing to unpack .../271-r-cran-nlme_3.1.164-1_arm64.deb ... 405s Unpacking r-cran-nlme (3.1.164-1) ... 405s Selecting previously unselected package r-cran-matrix. 405s Preparing to unpack .../272-r-cran-matrix_1.6-5-1_arm64.deb ... 405s Unpacking r-cran-matrix (1.6-5-1) ... 405s Selecting previously unselected package r-cran-mgcv. 405s Preparing to unpack .../273-r-cran-mgcv_1.9-1-1_arm64.deb ... 405s Unpacking r-cran-mgcv (1.9-1-1) ... 405s Selecting previously unselected package r-cran-ggplot2. 405s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 405s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 405s Selecting previously unselected package r-cran-cluster. 405s Preparing to unpack .../275-r-cran-cluster_2.1.6-1_arm64.deb ... 405s Unpacking r-cran-cluster (2.1.6-1) ... 405s Selecting previously unselected package r-cran-survival. 405s Preparing to unpack .../276-r-cran-survival_3.5-8-1_arm64.deb ... 405s Unpacking r-cran-survival (3.5-8-1) ... 405s Selecting previously unselected package r-cran-rpart. 405s Preparing to unpack .../277-r-cran-rpart_4.1.23-1_arm64.deb ... 405s Unpacking r-cran-rpart (4.1.23-1) ... 405s Selecting previously unselected package r-cran-nnet. 405s Preparing to unpack .../278-r-cran-nnet_7.3-19-2_arm64.deb ... 405s Unpacking r-cran-nnet (7.3-19-2) ... 405s Selecting previously unselected package r-cran-foreign. 405s Preparing to unpack .../279-r-cran-foreign_0.8.86-1_arm64.deb ... 405s Unpacking r-cran-foreign (0.8.86-1) ... 405s Selecting previously unselected package r-cran-gridextra. 405s Preparing to unpack .../280-r-cran-gridextra_2.3-3build1_all.deb ... 405s Unpacking r-cran-gridextra (2.3-3build1) ... 405s Selecting previously unselected package r-cran-data.table. 405s Preparing to unpack .../281-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 405s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 406s Selecting previously unselected package r-cran-backports. 406s Preparing to unpack .../282-r-cran-backports_1.4.1-1_arm64.deb ... 406s Unpacking r-cran-backports (1.4.1-1) ... 406s Selecting previously unselected package r-cran-checkmate. 406s Preparing to unpack .../283-r-cran-checkmate_2.3.1-1_arm64.deb ... 406s Unpacking r-cran-checkmate (2.3.1-1) ... 406s Selecting previously unselected package r-cran-htmlwidgets. 406s Preparing to unpack .../284-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 406s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 406s Selecting previously unselected package r-cran-rstudioapi. 406s Preparing to unpack .../285-r-cran-rstudioapi_0.15.0-1_all.deb ... 406s Unpacking r-cran-rstudioapi (0.15.0-1) ... 406s Selecting previously unselected package r-cran-htmltable. 406s Preparing to unpack .../286-r-cran-htmltable_2.4.2-1_all.deb ... 406s Unpacking r-cran-htmltable (2.4.2-1) ... 406s Selecting previously unselected package r-cran-viridis. 406s Preparing to unpack .../287-r-cran-viridis_0.6.5-1_all.deb ... 406s Unpacking r-cran-viridis (0.6.5-1) ... 406s Selecting previously unselected package r-cran-formula. 406s Preparing to unpack .../288-r-cran-formula_1.2-5-1_all.deb ... 406s Unpacking r-cran-formula (1.2-5-1) ... 406s Selecting previously unselected package r-cran-chron. 406s Preparing to unpack .../289-r-cran-chron_2.3-61-2_arm64.deb ... 406s Unpacking r-cran-chron (2.3-61-2) ... 406s Selecting previously unselected package r-cran-jpeg. 406s Preparing to unpack .../290-r-cran-jpeg_0.1-10-1_arm64.deb ... 406s Unpacking r-cran-jpeg (0.1-10-1) ... 406s Selecting previously unselected package r-cran-deldir. 406s Preparing to unpack .../291-r-cran-deldir_2.0-4-1_arm64.deb ... 406s Unpacking r-cran-deldir (2.0-4-1) ... 406s Selecting previously unselected package r-cran-rcppeigen. 406s Preparing to unpack .../292-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 406s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 406s Selecting previously unselected package r-cran-interp. 406s Preparing to unpack .../293-r-cran-interp_1.1-6-1_arm64.deb ... 406s Unpacking r-cran-interp (1.1-6-1) ... 406s Selecting previously unselected package r-cran-latticeextra. 406s Preparing to unpack .../294-r-cran-latticeextra_0.6-30-1_all.deb ... 406s Unpacking r-cran-latticeextra (0.6-30-1) ... 406s Selecting previously unselected package r-cran-acepack. 406s Preparing to unpack .../295-r-cran-acepack_1.4.2-1_arm64.deb ... 406s Unpacking r-cran-acepack (1.4.2-1) ... 406s Selecting previously unselected package r-cran-hmisc. 406s Preparing to unpack .../296-r-cran-hmisc_5.1-1-1_arm64.deb ... 406s Unpacking r-cran-hmisc (5.1-1-1) ... 406s Selecting previously unselected package r-cran-dichromat. 406s Preparing to unpack .../297-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 406s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 406s Selecting previously unselected package r-cran-matrixstats. 406s Preparing to unpack .../298-r-cran-matrixstats_1.2.0-1_arm64.deb ... 406s Unpacking r-cran-matrixstats (1.2.0-1) ... 406s Selecting previously unselected package r-bioc-matrixgenerics. 406s Preparing to unpack .../299-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 406s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 407s Selecting previously unselected package r-cran-abind. 407s Preparing to unpack .../300-r-cran-abind_1.4-5-2_all.deb ... 407s Unpacking r-cran-abind (1.4-5-2) ... 407s Selecting previously unselected package r-bioc-s4arrays. 407s Preparing to unpack .../301-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 407s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 407s Selecting previously unselected package r-bioc-sparsearray. 407s Preparing to unpack .../302-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 407s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 407s Selecting previously unselected package r-bioc-delayedarray. 407s Preparing to unpack .../303-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 407s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 407s Selecting previously unselected package r-bioc-summarizedexperiment. 407s Preparing to unpack .../304-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 407s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 407s Selecting previously unselected package r-bioc-rhtslib. 407s Preparing to unpack .../305-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 407s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 407s Selecting previously unselected package r-bioc-rsamtools. 407s Preparing to unpack .../306-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 407s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 407s Selecting previously unselected package r-bioc-genomicalignments. 407s Preparing to unpack .../307-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 407s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 407s Selecting previously unselected package r-cran-rjson. 407s Preparing to unpack .../308-r-cran-rjson_0.2.21-1_arm64.deb ... 407s Unpacking r-cran-rjson (0.2.21-1) ... 407s Selecting previously unselected package r-cran-restfulr. 407s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_arm64.deb ... 407s Unpacking r-cran-restfulr (0.0.15-1) ... 407s Selecting previously unselected package r-bioc-rtracklayer. 407s Preparing to unpack .../310-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 407s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 407s Selecting previously unselected package r-bioc-genomicfeatures. 407s Preparing to unpack .../311-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 407s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 407s Selecting previously unselected package r-bioc-bsgenome. 407s Preparing to unpack .../312-r-bioc-bsgenome_1.70.2-1_all.deb ... 407s Unpacking r-bioc-bsgenome (1.70.2-1) ... 407s Selecting previously unselected package r-bioc-variantannotation. 407s Preparing to unpack .../313-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 407s Unpacking r-bioc-variantannotation (1.48.1-1) ... 407s Selecting previously unselected package r-bioc-protgenerics. 407s Preparing to unpack .../314-r-bioc-protgenerics_1.34.0-1_all.deb ... 407s Unpacking r-bioc-protgenerics (1.34.0-1) ... 408s Selecting previously unselected package r-bioc-ensembldb. 408s Preparing to unpack .../315-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 408s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 408s Selecting previously unselected package r-bioc-biovizbase. 408s Preparing to unpack .../316-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 408s Unpacking r-bioc-biovizbase (1.50.0-1) ... 408s Selecting previously unselected package r-cran-plyr. 408s Preparing to unpack .../317-r-cran-plyr_1.8.9-1_arm64.deb ... 408s Unpacking r-cran-plyr (1.8.9-1) ... 408s Selecting previously unselected package r-cran-reshape2. 408s Preparing to unpack .../318-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 408s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 408s Selecting previously unselected package r-bioc-graph. 408s Preparing to unpack .../319-r-bioc-graph_1.80.0-1_arm64.deb ... 408s Unpacking r-bioc-graph (1.80.0-1) ... 408s Selecting previously unselected package r-bioc-rbgl. 408s Preparing to unpack .../320-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 408s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 408s Selecting previously unselected package r-bioc-organismdbi. 408s Preparing to unpack .../321-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 408s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 408s Selecting previously unselected package r-cran-broom. 408s Preparing to unpack .../322-r-cran-broom_1.0.5+dfsg-1_all.deb ... 408s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 408s Selecting previously unselected package r-cran-forcats. 408s Preparing to unpack .../323-r-cran-forcats_1.0.0-1_all.deb ... 408s Unpacking r-cran-forcats (1.0.0-1) ... 408s Selecting previously unselected package r-cran-clipr. 408s Preparing to unpack .../324-r-cran-clipr_0.8.0-1_all.deb ... 408s Unpacking r-cran-clipr (0.8.0-1) ... 408s Selecting previously unselected package r-cran-tzdb. 408s Preparing to unpack .../325-r-cran-tzdb_0.4.0-2_arm64.deb ... 408s Unpacking r-cran-tzdb (0.4.0-2) ... 408s Selecting previously unselected package r-cran-vroom. 408s Preparing to unpack .../326-r-cran-vroom_1.6.5-1_arm64.deb ... 408s Unpacking r-cran-vroom (1.6.5-1) ... 408s Selecting previously unselected package r-cran-readr. 408s Preparing to unpack .../327-r-cran-readr_2.1.5-1_arm64.deb ... 408s Unpacking r-cran-readr (2.1.5-1) ... 408s Selecting previously unselected package r-cran-haven. 408s Preparing to unpack .../328-r-cran-haven_2.5.4-1_arm64.deb ... 408s Unpacking r-cran-haven (2.5.4-1) ... 408s Selecting previously unselected package r-cran-labelled. 408s Preparing to unpack .../329-r-cran-labelled_2.12.0-2_all.deb ... 408s Unpacking r-cran-labelled (2.12.0-2) ... 409s Selecting previously unselected package r-cran-broom.helpers. 409s Preparing to unpack .../330-r-cran-broom.helpers_1.14.0-2_all.deb ... 409s Unpacking r-cran-broom.helpers (1.14.0-2) ... 409s Selecting previously unselected package r-cran-patchwork. 409s Preparing to unpack .../331-r-cran-patchwork_1.2.0-1_all.deb ... 409s Unpacking r-cran-patchwork (1.2.0-1) ... 409s Selecting previously unselected package r-cran-ggstats. 409s Preparing to unpack .../332-r-cran-ggstats_0.5.1-2_all.deb ... 409s Unpacking r-cran-ggstats (0.5.1-2) ... 409s Selecting previously unselected package r-cran-ggally. 409s Preparing to unpack .../333-r-cran-ggally_2.2.1-1_all.deb ... 409s Unpacking r-cran-ggally (2.2.1-1) ... 409s Selecting previously unselected package r-bioc-ggbio. 409s Preparing to unpack .../334-r-bioc-ggbio_1.50.0-1_all.deb ... 409s Unpacking r-bioc-ggbio (1.50.0-1) ... 409s Selecting previously unselected package r-cran-brio. 409s Preparing to unpack .../335-r-cran-brio_1.1.4-1_arm64.deb ... 409s Unpacking r-cran-brio (1.1.4-1) ... 409s Selecting previously unselected package r-cran-ps. 409s Preparing to unpack .../336-r-cran-ps_1.7.6-1_arm64.deb ... 409s Unpacking r-cran-ps (1.7.6-1) ... 409s Selecting previously unselected package r-cran-processx. 409s Preparing to unpack .../337-r-cran-processx_3.8.3-1_arm64.deb ... 409s Unpacking r-cran-processx (3.8.3-1) ... 409s Selecting previously unselected package r-cran-callr. 409s Preparing to unpack .../338-r-cran-callr_3.7.3-2_all.deb ... 409s Unpacking r-cran-callr (3.7.3-2) ... 409s Selecting previously unselected package r-cran-desc. 409s Preparing to unpack .../339-r-cran-desc_1.4.3-1_all.deb ... 409s Unpacking r-cran-desc (1.4.3-1) ... 409s Selecting previously unselected package r-cran-diffobj. 409s Preparing to unpack .../340-r-cran-diffobj_0.3.5-1_arm64.deb ... 409s Unpacking r-cran-diffobj (0.3.5-1) ... 409s Selecting previously unselected package r-cran-pkgbuild. 410s Preparing to unpack .../341-r-cran-pkgbuild_1.4.3-1_all.deb ... 410s Unpacking r-cran-pkgbuild (1.4.3-1) ... 410s Selecting previously unselected package r-cran-rprojroot. 410s Preparing to unpack .../342-r-cran-rprojroot_2.0.4-1_all.deb ... 410s Unpacking 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417s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 417s Setting up r-cran-utf8 (1.2.4-1) ... 417s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 417s Setting up r-cran-stringi (1.8.3-1) ... 417s Setting up texlive-latex-base (2023.20240207-1) ... 417s Setting up r-cran-cpp11 (0.4.7-1) ... 417s Setting up r-cran-plyr (1.8.9-1) ... 417s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 417s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 417s Setting up r-cran-isoband (0.2.7-1) ... 417s Setting up r-cran-futile.logger (1.4.3-4build1) ... 417s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 417s Setting up r-cran-later (1.3.2+dfsg-1) ... 417s Setting up r-cran-matrix (1.6-5-1) ... 417s Setting up r-cran-tinytex (0.49-1) ... 417s Setting up r-cran-knitr (1.45+dfsg-1) ... 417s Setting up r-cran-mgcv (1.9-1-1) ... 417s Setting up g++ (4:13.2.0-7ubuntu1) ... 417s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 417s Setting up r-cran-cachem (1.0.8-1) ... 417s 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r-cran-munsell (0.5.0-2build1) ... 417s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 417s Setting up r-cran-survival (3.5-8-1) ... 417s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 417s Setting up r-cran-forcats (1.0.0-1) ... 417s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 417s Setting up texlive-bibtex-extra (2023.20240207-1) ... 417s Setting up r-cran-reshape2 (1.4.4-2build1) ... 417s Setting up r-cran-interp (1.1-6-1) ... 417s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 417s Setting up r-cran-httr (1.4.7+dfsg-1) ... 417s Setting up r-cran-gridextra (2.3-3build1) ... 417s Setting up r-cran-hms (1.1.3-1) ... 417s Setting up r-cran-scales (1.3.0-1) ... 417s Setting up r-cran-memoise (2.0.1-1) ... 417s Setting up r-cran-promises (1.2.1+dfsg-1) ... 417s Setting up r-cran-purrr (1.0.2-1) ... 417s Setting up r-cran-blob (1.2.4-1) ... 417s Setting up r-cran-htmltools (0.5.7-1) ... 417s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 417s Setting up r-bioc-xvector (0.42.0-1) ... 417s Setting up r-cran-pkgbuild (1.4.3-1) ... 417s Setting up r-cran-sass (0.4.8+dfsg-1) ... 417s Setting up r-cran-dplyr (1.1.4-1) ... 417s Setting up r-cran-rsqlite (2.3.4-1) ... 417s Setting up r-cran-progress (1.2.3-1) ... 417s Setting up r-cran-pkgload (1.3.4-1) ... 417s Setting up r-cran-vroom (1.6.5-1) ... 417s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 417s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 417s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 417s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 417s Setting up r-cran-rematch2 (2.1.2-2build1) ... 417s Setting up r-cran-rpart (4.1.23-1) ... 417s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 417s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 417s Setting up r-cran-fontawesome (0.5.2-1) ... 417s Setting up r-cran-latticeextra (0.6-30-1) ... 417s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 417s Setting up r-cran-viridis (0.6.5-1) ... 417s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 417s Setting up r-cran-readr (2.1.5-1) ... 417s Setting up r-cran-waldo (0.5.2-1build1) ... 417s Setting up r-cran-tidyr (1.3.1-1) ... 417s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 417s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 417s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 417s Setting up r-cran-patchwork (1.2.0-1) ... 417s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 417s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 417s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 417s Setting up r-cran-haven (2.5.4-1) ... 417s Setting up r-bioc-annotationdbi (1.64.1-1) ... 417s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 417s Setting up r-cran-testthat (3.2.1-1) ... 417s Setting up r-cran-broom (1.0.5+dfsg-1) ... 417s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 417s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 417s Setting up r-cran-labelled (2.12.0-2) ... 417s Setting up r-bioc-genomicalignments (1.38.2-1) ... 417s Setting up r-cran-bookdown (0.37+dfsg-1) ... 417s Setting up r-bioc-rtracklayer (1.62.0-1) ... 417s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 417s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 417s Setting up r-cran-broom.helpers (1.14.0-2) ... 417s Setting up r-bioc-bsgenome (1.70.2-1) ... 417s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 417s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 417s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 417s Setting up r-cran-ggstats (0.5.1-2) ... 417s Setting up r-bioc-variantannotation (1.48.1-1) ... 417s Setting up r-cran-ggally (2.2.1-1) ... 417s Setting up r-cran-htmltable (2.4.2-1) ... 417s Setting up r-cran-hmisc (5.1-1-1) ... 417s Setting up r-bioc-biovizbase (1.50.0-1) ... 417s Setting up r-bioc-ggbio (1.50.0-1) ... 417s Setting up autopkgtest-satdep (0) ... 417s Processing triggers for man-db (2.12.0-3) ... 418s Processing triggers for install-info (7.1-3) ... 418s Processing triggers for libc-bin (2.39-0ubuntu2) ... 418s Processing triggers for tex-common (6.18) ... 419s Running updmap-sys. This may take some time... done. 419s Running mktexlsr /var/lib/texmf ... done. 419s Building format(s) --all. 455s This may take some time... done. 471s (Reading database ... 130234 files and directories currently installed.) 471s Removing autopkgtest-satdep (0) ... 472s autopkgtest [13:57:29]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 472s autopkgtest [13:57:29]: test pkg-r-autopkgtest: [----------------------- 472s Test: Try to load the R library ggbio 472s 472s R version 4.3.2 (2023-10-31) -- "Eye Holes" 472s Copyright (C) 2023 The R Foundation for Statistical Computing 472s Platform: aarch64-unknown-linux-gnu (64-bit) 472s 472s R is free software and comes with ABSOLUTELY NO WARRANTY. 472s You are welcome to redistribute it under certain conditions. 472s Type 'license()' or 'licence()' for distribution details. 472s 472s R is a collaborative project with many contributors. 472s Type 'contributors()' for more information and 472s 'citation()' on how to cite R or R packages in publications. 472s 472s Type 'demo()' for some demos, 'help()' for on-line help, or 472s 'help.start()' for an HTML browser interface to help. 472s Type 'q()' to quit R. 472s 472s > library('ggbio') 472s Loading required package: BiocGenerics 472s 472s Attaching package: ‘BiocGenerics’ 472s 472s The following objects are masked from ‘package:stats’: 472s 472s IQR, mad, sd, var, xtabs 472s 472s The following objects are masked from ‘package:base’: 472s 472s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 472s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 472s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 472s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 472s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 472s table, tapply, union, unique, unsplit, which.max, which.min 472s 472s Loading required package: ggplot2 473s Registered S3 method overwritten by 'GGally': 473s method from 473s +.gg ggplot2 488s Need specific help about ggbio? try mailing 488s the maintainer or visit https://lawremi.github.io/ggbio/ 488s 488s Attaching package: 'ggbio' 488s 488s The following objects are masked from 'package:ggplot2': 488s 488s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 488s xlim 488s 488s > 488s > 490s Other tests are currently unsupported! 490s They will be progressively added. 490s autopkgtest [13:57:47]: test pkg-r-autopkgtest: -----------------------] 491s pkg-r-autopkgtest PASS 491s autopkgtest [13:57:48]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 491s autopkgtest [13:57:48]: @@@@@@@@@@@@@@@@@@@@ summary 491s pkg-r-autopkgtest PASS 502s Creating nova instance adt-noble-arm64-r-bioc-ggbio-20240316-134937-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...