0s autopkgtest [13:43:29]: starting date and time: 2024-03-16 13:43:29+0000 0s autopkgtest [13:43:29]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [13:43:29]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.9_jc01yh/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-bioc-rsamtools,src:curl,src:libpsl,src:openssl,src:orthanc-python --apt-upgrade r-bioc-ggbio --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-bioc-rsamtools/2.18.0+dfsg-1build1 curl/8.5.0-2ubuntu7 libpsl/0.21.2-1.1 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-22.secgroup --name adt-noble-arm64-r-bioc-ggbio-20240316-134329-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 80s autopkgtest [13:44:49]: testbed dpkg architecture: arm64 80s autopkgtest [13:44:49]: testbed apt version: 2.7.12 80s autopkgtest [13:44:49]: @@@@@@@@@@@@@@@@@@@@ test bed setup 81s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 81s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3690 kB] 81s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [474 kB] 81s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 81s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 81s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 81s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 81s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 81s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 81s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [4006 kB] 82s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 82s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.8 kB] 82s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 84s Fetched 9092 kB in 2s (5073 kB/s) 84s Reading package lists... 90s Reading package lists... 94s Building dependency tree... 94s Reading state information... 94s Calculating upgrade... 95s The following packages will be REMOVED: 95s libssl3 95s The following NEW packages will be installed: 95s libssl3t64 95s The following packages have been kept back: 95s curl 95s The following packages will be upgraded: 95s openssl ubuntu-minimal ubuntu-standard 96s 3 upgraded, 1 newly installed, 1 to remove and 1 not upgraded. 96s Need to get 2775 kB of archives. 96s After this operation, 72.7 kB of additional disk space will be used. 96s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 96s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 96s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 96s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 97s Fetched 2775 kB in 1s (3177 kB/s) 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 97s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 97s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 97s wget depends on libssl3 (>= 3.0.0). 97s u-boot-tools depends on libssl3 (>= 3.0.0). 97s tnftp depends on libssl3 (>= 3.0.0). 97s tcpdump depends on libssl3 (>= 3.0.0). 97s systemd-resolved depends on libssl3 (>= 3.0.0). 97s systemd depends on libssl3 (>= 3.0.0). 97s sudo depends on libssl3 (>= 3.0.0). 97s sbsigntool depends on libssl3 (>= 3.0.0). 97s rsync depends on libssl3 (>= 3.0.0). 97s python3-cryptography depends on libssl3 (>= 3.0.0). 97s openssh-server depends on libssl3 (>= 3.0.10). 97s openssh-client depends on libssl3 (>= 3.0.10). 97s mtd-utils depends on libssl3 (>= 3.0.0). 97s mokutil depends on libssl3 (>= 3.0.0). 97s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 97s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 97s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 97s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 97s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 97s libnvme1 depends on libssl3 (>= 3.0.0). 97s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 97s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 97s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 97s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 97s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 97s kmod depends on libssl3 (>= 3.0.0). 97s dhcpcd-base depends on libssl3 (>= 3.0.0). 97s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 97s 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 97s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 97s Selecting previously unselected package libssl3t64:arm64. 97s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 97s Preparing to unpack .../libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 97s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 97s Preparing to unpack .../ubuntu-minimal_1.536_arm64.deb ... 97s Unpacking ubuntu-minimal (1.536) over (1.535) ... 97s Preparing to unpack .../ubuntu-standard_1.536_arm64.deb ... 97s Unpacking ubuntu-standard (1.536) over (1.535) ... 98s Setting up ubuntu-minimal (1.536) ... 98s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 98s Setting up ubuntu-standard (1.536) ... 98s Setting up openssl (3.0.13-0ubuntu1) ... 98s Processing triggers for man-db (2.12.0-3) ... 98s Processing triggers for libc-bin (2.39-0ubuntu2) ... 99s Reading package lists... 99s Building dependency tree... 99s Reading state information... 100s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 101s sh: Attempting to set up Debian/Ubuntu apt sources automatically 101s sh: Distribution appears to be Ubuntu 101s Reading package lists... 102s Building dependency tree... 102s Reading state information... 102s eatmydata is already the newest version (131-1). 102s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 102s Reading package lists... 103s Building dependency tree... 103s Reading state information... 103s dbus is already the newest version (1.14.10-4ubuntu1). 103s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 103s Reading package lists... 104s Building dependency tree... 104s Reading state information... 104s rng-tools-debian is already the newest version (2.4). 104s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 104s Reading package lists... 105s Building dependency tree... 105s Reading state information... 106s The following packages will be REMOVED: 106s cloud-init* python3-configobj* python3-debconf* 106s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 106s After this operation, 3252 kB disk space will be freed. 106s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74760 files and directories currently installed.) 106s Removing cloud-init (24.1.1-0ubuntu1) ... 107s Removing python3-configobj (5.0.8-3) ... 107s Removing python3-debconf (1.5.86) ... 107s Processing triggers for man-db (2.12.0-3) ... 108s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74371 files and directories currently installed.) 108s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 108s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 108s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 108s invoke-rc.d: policy-rc.d denied execution of try-restart. 109s Reading package lists... 109s Building dependency tree... 109s Reading state information... 109s linux-generic is already the newest version (6.8.0-11.11+1). 109s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 110s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 110s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 110s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 112s Reading package lists... 113s Reading package lists... 113s Building dependency tree... 113s Reading state information... 113s Calculating upgrade... 114s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 114s Reading package lists... 114s Building dependency tree... 114s Reading state information... 115s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 115s autopkgtest [13:45:24]: rebooting testbed after setup commands that affected boot 153s autopkgtest-virt-ssh: WARNING: ssh connection failed. Retrying in 3 seconds... 164s autopkgtest [13:46:13]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 167s autopkgtest [13:46:16]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-ggbio 170s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (dsc) [2564 B] 170s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (tar) [3252 kB] 170s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-ggbio 1.50.0-1 (diff) [5428 B] 170s gpgv: Signature made Fri Dec 8 14:52:19 2023 UTC 170s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 170s gpgv: issuer "tille@debian.org" 170s gpgv: Can't check signature: No public key 170s dpkg-source: warning: cannot verify inline signature for ./r-bioc-ggbio_1.50.0-1.dsc: no acceptable signature found 171s autopkgtest [13:46:20]: testing package r-bioc-ggbio version 1.50.0-1 171s autopkgtest [13:46:20]: build not needed 172s autopkgtest [13:46:21]: test pkg-r-autopkgtest: preparing testbed 174s Reading package lists... 174s Building dependency tree... 174s Reading state information... 174s Starting pkgProblemResolver with broken count: 0 174s Starting 2 pkgProblemResolver with broken count: 0 174s Done 175s The following additional packages will be installed: 175s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 175s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 175s fonts-font-awesome fonts-glyphicons-halflings fonts-lmodern fonts-mathjax 175s g++ g++-13 g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 175s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 175s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 175s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 175s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 175s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 175s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 175s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 175s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 175s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 175s libjs-highlight.js libjs-jquery libjs-jquery-datatables 175s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 175s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 175s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 175s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 175s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 175s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 175s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 175s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 175s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 175s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 175s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 175s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 175s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 175s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 175s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 175s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 175s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 175s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 175s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 175s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 175s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 175s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 175s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 175s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 175s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 175s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 175s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 175s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 175s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 175s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 175s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 175s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 175s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 175s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 175s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 175s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 175s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 175s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 175s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 175s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 175s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 175s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 175s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 175s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 175s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 175s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 175s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 175s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 175s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 175s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 175s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 175s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 175s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 175s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 175s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 175s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 175s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 175s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 175s xdg-utils zip zlib1g-dev 175s Suggested packages: 175s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 175s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 175s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 175s | lighttpd | httpd liblapack-doc libboost-doc libboost1.83-doc 175s libboost-atomic1.83-dev libboost-chrono1.83-dev libboost-container1.83-dev 175s libboost-context1.83-dev libboost-contract1.83-dev 175s libboost-coroutine1.83-dev libboost-date-time1.83-dev 175s libboost-exception1.83-dev libboost-fiber1.83-dev 175s libboost-filesystem1.83-dev libboost-graph-parallel1.83-dev 175s libboost-graph1.83-dev libboost-iostreams1.83-dev libboost-json1.83-dev 175s libboost-locale1.83-dev libboost-log1.83-dev libboost-math1.83-dev 175s libboost-mpi-python1.83-dev libboost-mpi1.83-dev libboost-nowide1.83-dev 175s libboost-numpy1.83-dev libboost-program-options1.83-dev 175s libboost-python1.83-dev libboost-random1.83-dev libboost-regex1.83-dev 175s libboost-serialization1.83-dev libboost-stacktrace1.83-dev 175s libboost-system1.83-dev libboost-test1.83-dev libboost-thread1.83-dev 175s libboost-timer1.83-dev libboost-type-erasure1.83-dev libboost-url1.83-dev 175s libboost-wave1.83-dev libboost1.83-tools-dev libmpfrc++-dev libntl-dev 175s glibc-doc icu-doc libjs-jquery-ui-docs fonts-mathjax-extras fonts-stix 175s libjs-mathjax-doc liblzma-doc ncurses-doc readline-doc libstdc++-13-doc 175s tcl8.6 tk8.6 nodejs texlive-latex-recommended texlive-xetex texlive-luatex 175s pandoc-citeproc texlive-latex-extra context wkhtmltopdf librsvg2-bin groff 175s ghc php python ruby libjs-katex citation-style-language-styles elpa-ess 175s r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-plain-generic 175s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 175s r-bioc-go.db r-cran-runit r-bioc-org.hs.eg.db r-bioc-all r-bioc-affy 175s r-bioc-deseq2 r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel 175s r-bioc-shortread r-cran-batchtools r-cran-mockery r-cran-webmockr 175s r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats 175s r-bioc-gviz r-bioc-annotationhub r-cran-r.utils r-bioc-edger r-cran-markdown 175s r-bioc-dexseq r-cran-sparsem r-bioc-sparsematrixstats r-bioc-limma 175s r-bioc-rhdf5 r-bioc-snpstats r-cran-roxygen2 r-cran-ff r-cran-covr 175s r-cran-aer r-cran-bbmle r-cran-boot r-cran-car r-cran-cardata r-cran-caret 175s r-cran-cmprsk r-cran-coda r-cran-e1071 r-cran-emmeans r-cran-epir r-cran-gam 175s r-cran-gee r-cran-geepack r-cran-glmnet r-cran-gmm r-cran-irlba r-cran-ks 175s r-cran-lavaan r-cran-leaps r-cran-lme4 r-cran-lmtest r-cran-lsmeans 175s r-cran-maps r-cran-mclust r-cran-metafor r-cran-modeldata r-cran-multcomp 175s r-cran-network r-cran-ordinal r-cran-plm r-cran-psych r-cran-quantreg 175s r-cran-robust r-cran-robustbase r-cran-rsample r-cran-sandwich r-cran-sp 175s r-cran-spdep r-cran-spatialreg r-cran-spelling r-cran-survey 175s r-cran-systemfit r-cran-tseries r-cran-zoo r-cran-kernsmooth r-cran-kernlab 175s r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-rmysql r-cran-polyclip 175s r-cran-lubridate r-cran-scatterplot3d r-cran-magick r-cran-sf r-cran-getopt 175s r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-units 175s r-cran-vdiffr r-cran-inline r-cran-rmpi r-cran-rlecuyer r-cran-bench 175s r-cran-here debhelper ghostscript gv | postscript-viewer perl-tk xpdf 175s | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-latex-base-doc 175s wp2latex 175s Recommended packages: 175s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 175s r-recommended r-doc-html r-bioc-biocversion r-cran-remotes r-cran-downlit 175s r-cran-miniui r-cran-rsconnect r-cran-testit r-cran-tufte r-cran-webshot 175s r-cran-covr r-cran-brms r-cran-broom.mixed r-cran-cmprsk r-cran-effects 175s r-cran-emmeans r-cran-gam r-cran-gee r-cran-geepack r-cran-ggeffects 175s r-cran-glmmtmb r-cran-lavaan r-cran-lme4 r-cran-mice r-cran-ordinal 175s r-cran-parameters r-cran-plm r-cran-pscl r-cran-rstanarm r-cran-spelling 175s r-cran-survey r-cran-vgam r-cran-thematic r-cran-cliapp r-cran-mockery 175s r-cran-fastmatch r-cran-devtools r-cran-tinytest r-cran-whoami r-cran-bench 175s r-cran-decor r-cran-lobstr r-cran-webutils r-cran-r.utils r-cran-xts 175s r-cran-nanotime r-cran-zoo r-cran-rpostgresql r-cran-gh r-cran-rmysql 175s r-cran-unitizer r-cran-rsvg r-cran-geosphere r-cran-ggforce r-cran-igraph 175s r-cran-intergraph r-cran-maps r-cran-mapproj r-cran-network r-cran-sna 175s r-cran-roxygen2 r-cran-crosstalk r-cran-vdiffr r-cran-hexbin r-cran-multcomp 175s r-cran-profvis r-cran-quantreg r-cran-ragg r-cran-sf r-cran-svglite 175s r-cran-reshape r-cran-cairo r-cran-markdown r-cran-r.rsp r-cran-gridsvg 175s r-cran-magick r-cran-reticulate r-cran-rgl r-cran-tikzdevice 175s node-highlight.js r-cran-snakecase r-cran-lintr r-cran-tidyverse 175s r-cran-r.devices r-cran-sodium r-cran-gridgraphics r-cran-lubridate 175s r-cran-mathjaxr r-cran-mockr r-cran-doparallel r-cran-foreach 175s r-cran-iterators r-cran-itertools r-cran-webfakes r-cran-future r-cran-pingr 175s r-cran-runit r-cran-usethis r-cran-dygraphs r-cran-dbitest r-cran-gert 175s r-cran-rvest r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 175s lmodern dvisvgm libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 175s x11-utils x11-xserver-utils 175s The following NEW packages will be installed: 175s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 175s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 175s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 175s fonts-glyphicons-halflings fonts-lmodern fonts-mathjax g++ g++-13 175s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 175s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 175s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 175s javascript-common libasan8 libatomic1 libbibtex-parser-perl libblas-dev 175s libblas3 libboost-dev libboost1.83-dev libbz2-dev libc-dev-bin libc6-dev 175s libcairo2 libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 175s libgcc-13-dev libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 175s libharfbuzz0b libhwasan0 libice6 libicu-dev libio-string-perl libisl23 175s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 175s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 175s libjs-highlight.js libjs-jquery libjs-jquery-datatables 175s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-lunr 175s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 175s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 175s libkpathsea6 liblapack-dev liblapack3 liblatex-tounicode-perl liblerc4 175s liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 175s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 175s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 175s libpixman-1-0 libpkgconf3 libpng-dev libpotrace0 libptexenc1 libreadline-dev 175s libsharpyuv0 libsm6 libstdc++-13-dev libsynctex2 libtcl8.6 libteckit0 175s libtexlua53-5 libthai-data libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 175s libubsan1 libwebp7 libxaw7 libxcb-render0 libxcb-shm0 libxft2 libxi6 libxmu6 175s libxpm4 libxrender1 libxss1 libxt6 libzzip-0-13 linux-libc-dev littler 175s node-bootstrap-sass node-html5shiv node-normalize.css pandoc pandoc-data 175s pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev 175s r-bioc-annotationdbi r-bioc-annotationfilter r-bioc-biobase 175s r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel 175s r-bioc-biocstyle r-bioc-biomart r-bioc-biostrings r-bioc-biovizbase 175s r-bioc-bsgenome r-bioc-delayedarray r-bioc-ensembldb r-bioc-genomeinfodb 175s r-bioc-genomeinfodbdata r-bioc-genomicalignments r-bioc-genomicfeatures 175s r-bioc-genomicranges r-bioc-ggbio r-bioc-graph r-bioc-iranges 175s r-bioc-keggrest r-bioc-matrixgenerics r-bioc-organismdbi r-bioc-protgenerics 175s r-bioc-rbgl r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer 175s r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray 175s r-bioc-summarizedexperiment r-bioc-variantannotation r-bioc-xvector 175s r-bioc-zlibbioc r-cran-abind r-cran-acepack r-cran-askpass r-cran-backports 175s r-cran-base64enc r-cran-bh r-cran-biocmanager r-cran-bit r-cran-bit64 175s r-cran-bitops r-cran-blob r-cran-bookdown r-cran-brio r-cran-broom 175s r-cran-broom.helpers r-cran-bslib r-cran-cachem r-cran-callr 175s r-cran-checkmate r-cran-chron r-cran-cli r-cran-clipr r-cran-cluster 175s r-cran-codetools r-cran-colorspace r-cran-commonmark r-cran-cpp11 175s r-cran-crayon r-cran-curl r-cran-data.table r-cran-dbi r-cran-dbplyr 175s r-cran-deldir r-cran-desc r-cran-dichromat r-cran-diffobj r-cran-digest 175s r-cran-dplyr r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-farver 175s r-cran-fastmap r-cran-filelock r-cran-fontawesome r-cran-forcats 175s r-cran-foreign r-cran-formatr r-cran-formula r-cran-fs r-cran-futile.logger 175s r-cran-futile.options r-cran-generics r-cran-ggally r-cran-ggplot2 175s r-cran-ggstats r-cran-glue r-cran-gridextra r-cran-gtable r-cran-haven 175s r-cran-highr r-cran-hmisc r-cran-hms r-cran-htmltable r-cran-htmltools 175s r-cran-htmlwidgets r-cran-httpuv r-cran-httr r-cran-interp r-cran-isoband 175s r-cran-jpeg r-cran-jquerylib r-cran-jsonlite r-cran-knitr r-cran-labeling 175s r-cran-labelled r-cran-lambda.r r-cran-later r-cran-lattice 175s r-cran-latticeextra r-cran-lazyeval r-cran-lifecycle r-cran-littler 175s r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise 175s r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-nnet 175s r-cran-openssl r-cran-patchwork r-cran-pillar r-cran-pkgbuild 175s r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr 175s r-cran-png r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 175s r-cran-promises r-cran-ps r-cran-purrr r-cran-r6 r-cran-rappdirs 175s r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen r-cran-rcurl r-cran-readr 175s r-cran-rematch2 r-cran-reshape2 r-cran-restfulr r-cran-rjson r-cran-rlang 175s r-cran-rmarkdown r-cran-rpart r-cran-rprojroot r-cran-rsqlite 175s r-cran-rstudioapi r-cran-sass r-cran-scales r-cran-shiny r-cran-snow 175s r-cran-sourcetools r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys 175s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 175s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridis r-cran-viridislite 175s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml r-cran-xml2 175s r-cran-xtable r-cran-yaml rpcsvc-proto t1utils tex-common texlive-base 175s texlive-bibtex-extra texlive-binaries texlive-latex-base unzip x11-common 175s xdg-utils zip zlib1g-dev 175s 0 upgraded, 349 newly installed, 0 to remove and 0 not upgraded. 175s Need to get 493 MB/493 MB of archives. 175s After this operation, 1460 MB of additional disk space will be used. 175s Get:1 /tmp/autopkgtest.cQpFJV/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [752 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 175s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 176s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 176s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 176s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 176s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 176s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 176s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 176s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 176s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 176s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 176s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 176s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 176s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 176s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 176s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 176s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 176s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 176s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 177s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 177s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 177s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 177s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 177s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 177s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 177s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 177s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 177s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 177s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 178s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 178s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 178s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 178s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 178s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 178s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 178s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 178s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 178s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 178s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 178s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 178s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 178s Get:43 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-lmodern all 2.005-1 [4799 kB] 178s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 178s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 178s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 178s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 178s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 178s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 178s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 178s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 178s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 178s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libio-string-perl all 1.08-4 [11.1 kB] 178s Get:54 http://ftpmaster.internal/ubuntu noble/universe arm64 liblatex-tounicode-perl all 0.54-2 [29.0 kB] 178s Get:55 http://ftpmaster.internal/ubuntu noble/universe arm64 libbibtex-parser-perl all 1.04+dfsg-1 [16.7 kB] 178s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 178s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 178s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libboost1.83-dev arm64 1.83.0-2ubuntu1 [15.3 MB] 178s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libboost-dev arm64 1.83.0.1ubuntu2 [4308 B] 178s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 178s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 178s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 178s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 178s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 178s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 179s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 179s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 179s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 179s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 179s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 179s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 179s Get:72 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 179s Get:73 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 179s Get:74 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 179s Get:75 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 179s Get:76 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 179s Get:77 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 179s Get:78 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 179s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 179s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 179s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 179s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 179s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 179s Get:84 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 179s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 179s Get:86 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 179s Get:87 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 179s Get:88 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 179s Get:89 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 179s Get:90 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 179s Get:91 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-lunr all 2.3.9~dfsg-2 [66.8 kB] 179s Get:92 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 179s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libkpathsea6 arm64 2023.20230311.66589-9 [62.7 kB] 179s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 179s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 179s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 179s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 179s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 179s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 179s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 179s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 179s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 179s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 180s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 180s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 180s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 180s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 180s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 180s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 180s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 180s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 180s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 180s Get:113 http://ftpmaster.internal/ubuntu noble/universe arm64 libpotrace0 arm64 1.16-2 [15.2 kB] 180s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libptexenc1 arm64 2023.20230311.66589-9 [40.0 kB] 180s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 180s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 180s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 180s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 libsynctex2 arm64 2023.20230311.66589-9 [59.1 kB] 180s Get:119 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 180s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 libteckit0 arm64 2.5.12+ds1-1 [405 kB] 180s Get:121 http://ftpmaster.internal/ubuntu noble/main arm64 libtexlua53-5 arm64 2023.20230311.66589-9 [120 kB] 180s Get:122 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 180s Get:123 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 180s Get:124 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 180s Get:125 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 180s Get:126 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 180s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 180s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 180s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 libxmu6 arm64 2:1.1.3-3 [48.9 kB] 180s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 libxpm4 arm64 1:3.5.17-1 [34.5 kB] 180s Get:131 http://ftpmaster.internal/ubuntu noble/main arm64 libxaw7 arm64 2:1.0.14-1 [184 kB] 180s Get:132 http://ftpmaster.internal/ubuntu noble/main arm64 libxi6 arm64 2:1.8.1-1 [31.9 kB] 180s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 libzzip-0-13 arm64 0.13.72+dfsg.1-1.1 [26.6 kB] 180s Get:134 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 180s Get:135 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 180s Get:136 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 180s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 181s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 181s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 181s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 181s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 181s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 181s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 181s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 182s Get:145 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 182s Get:146 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 182s Get:147 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 182s Get:148 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 182s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 182s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 182s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 182s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 182s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4vectors arm64 0.40.2+dfsg-1 [2055 kB] 182s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-iranges arm64 2.36.0-1 [2250 kB] 182s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbi all 1.2.2-1 [823 kB] 182s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 182s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 182s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 182s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 183s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 183s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 183s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 183s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-blob all 1.2.4-1 [49.8 kB] 183s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 183s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 183s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 183s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 183s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plogr all 0.2.0-3build1 [15.1 kB] 183s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 183s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rsqlite arm64 2.3.4-1 [1371 kB] 183s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 183s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 183s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 183s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 183s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 183s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 183s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 183s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 183s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-png arm64 0.1-8-1 [39.9 kB] 183s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-zlibbioc all 1.48.0+dfsg-1 [9596 B] 183s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-xvector arm64 0.42.0-1 [620 kB] 183s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bitops arm64 1.0-7-1 [29.5 kB] 183s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcurl arm64 1.98-1.14+dfsg-1 [793 kB] 183s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodbdata all 1.2.11-2 [12.3 MB] 183s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomeinfodb all 1.38.6+dfsg-1 [3886 kB] 183s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 183s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biostrings arm64 2.70.2+dfsg-1 [13.6 MB] 184s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB] 184s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationdbi all 1.64.1-1 [4897 kB] 184s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicranges arm64 1.54.1+dfsg-1 [1822 kB] 184s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 184s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-annotationfilter all 1.26.0+dfsg-1 [239 kB] 184s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 184s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 184s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 184s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 184s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 184s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 184s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 184s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 184s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 184s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 184s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 184s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 185s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 185s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dbplyr all 2.4.0+dfsg-1 [1172 kB] 185s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-filelock arm64 1.0.3-1 [29.7 kB] 185s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocfilecache all 2.10.1+dfsg-1 [300 kB] 185s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocio all 1.12.0+dfsg-1 [213 kB] 185s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formatr all 1.14-1 [152 kB] 185s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lambda.r all 1.2.4-2build1 [119 kB] 185s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.options all 1.0.1-3build1 [20.2 kB] 185s Get:213 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-futile.logger all 1.4.3-4build1 [99.3 kB] 185s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-snow all 1:0.4.4-2 [97.6 kB] 185s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-codetools all 0.2-19-1 [90.5 kB] 185s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bh all 1.84.0-1 [5962 B] 185s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocparallel arm64 1.36.0-1 [1345 kB] 185s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 185s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 185s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 185s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 185s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 185s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 185s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 185s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 185s Get:226 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 185s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 185s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 185s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 185s Get:230 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 185s Get:231 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 185s Get:232 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 185s Get:233 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 186s Get:234 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 186s Get:235 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 186s Get:236 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 186s Get:237 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 186s Get:238 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 186s Get:239 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 186s Get:240 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 186s Get:241 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 186s Get:242 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 186s Get:243 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 186s Get:244 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 186s Get:245 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 186s Get:246 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 186s Get:247 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bookdown all 0.37+dfsg-1 [1408 kB] 186s Get:248 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-biocmanager all 1.30.22+dfsg-2 [125 kB] 186s Get:249 http://ftpmaster.internal/ubuntu noble/universe arm64 tex-common all 6.18 [32.8 kB] 186s Get:250 http://ftpmaster.internal/ubuntu noble/main arm64 t1utils arm64 1.41-4build2 [61.5 kB] 186s Get:251 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-binaries arm64 2023.20230311.66589-9 [8364 kB] 186s Get:252 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-base all 2023.20240207-1 [21.7 MB] 187s Get:253 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-latex-base all 2023.20240207-1 [1238 kB] 187s Get:254 http://ftpmaster.internal/ubuntu noble/universe arm64 texlive-bibtex-extra all 2023.20240207-1 [79.1 MB] 190s Get:255 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocstyle all 2.30.0+dfsg-1 [451 kB] 190s Get:256 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml arm64 3.99-0.16.1-1 [1734 kB] 190s Get:257 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 190s Get:258 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 190s Get:259 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 190s Get:260 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 190s Get:261 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biomart all 2.58.2+dfsg-1 [433 kB] 190s Get:262 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-farver arm64 2.1.1-1 [1336 kB] 190s Get:263 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labeling all 0.4.3-1 [62.1 kB] 190s Get:264 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-colorspace arm64 2.1-0+dfsg-1 [1540 kB] 190s Get:265 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-munsell all 0.5.0-2build1 [208 kB] 190s Get:266 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcolorbrewer all 1.1-3-1build1 [55.4 kB] 190s Get:267 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridislite all 0.4.2-2 [1088 kB] 190s Get:268 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-scales all 1.3.0-1 [603 kB] 190s Get:269 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gtable all 0.3.4+dfsg-1 [191 kB] 191s Get:270 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-isoband arm64 0.2.7-1 [1481 kB] 191s Get:271 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mass arm64 7.3-60.0.1-1 [1119 kB] 191s Get:272 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lattice arm64 0.22-5-1 [1342 kB] 191s Get:273 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nlme arm64 3.1.164-1 [2259 kB] 191s Get:274 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrix arm64 1.6-5-1 [3776 kB] 191s Get:275 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mgcv arm64 1.9-1-1 [3248 kB] 191s Get:276 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggplot2 all 3.4.4+dfsg-1 [3411 kB] 191s Get:277 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cluster arm64 2.1.6-1 [552 kB] 191s Get:278 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-survival arm64 3.5-8-1 [6116 kB] 191s Get:279 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rpart arm64 4.1.23-1 [660 kB] 191s Get:280 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-nnet arm64 7.3-19-2 [111 kB] 191s Get:281 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-foreign arm64 0.8.86-1 [240 kB] 191s Get:282 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-gridextra all 2.3-3build1 [1024 kB] 191s Get:283 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 191s Get:284 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-backports arm64 1.4.1-1 [101 kB] 191s Get:285 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-checkmate arm64 2.3.1-1 [711 kB] 192s Get:286 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmlwidgets all 1.6.4+dfsg-1 [123 kB] 192s Get:287 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rstudioapi all 0.15.0-1 [277 kB] 192s Get:288 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltable all 2.4.2-1 [381 kB] 192s Get:289 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-viridis all 0.6.5-1 [2770 kB] 192s Get:290 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-formula all 1.2-5-1 [158 kB] 192s Get:291 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-chron arm64 2.3-61-2 [186 kB] 192s Get:292 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jpeg arm64 0.1-10-1 [30.8 kB] 192s Get:293 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-deldir arm64 2.0-4-1 [270 kB] 192s Get:294 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcppeigen arm64 0.3.3.9.4-1 [1180 kB] 192s Get:295 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-interp arm64 1.1-6-1 [1433 kB] 192s Get:296 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-latticeextra all 0.6-30-1 [2198 kB] 192s Get:297 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-acepack arm64 1.4.2-1 [60.5 kB] 192s Get:298 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hmisc arm64 5.1-1-1 [3486 kB] 192s Get:299 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dichromat all 1:2.0-0.1-1 [148 kB] 192s Get:300 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-matrixstats arm64 1.2.0-1 [475 kB] 192s Get:301 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-matrixgenerics all 1.14.0-1 [407 kB] 192s Get:302 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-abind all 1.4-5-2 [63.6 kB] 192s Get:303 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-s4arrays arm64 1.2.0+dfsg-1 [501 kB] 192s Get:304 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-sparsearray arm64 1.2.4+dfsg-1 [1195 kB] 192s Get:305 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-delayedarray arm64 0.28.0+dfsg-1 [1786 kB] 193s Get:306 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1134 kB] 193s Get:307 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rhtslib arm64 2.4.1+dfsg-1 [1357 kB] 193s Get:308 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rsamtools arm64 2.18.0+dfsg-1 [3629 kB] 193s Get:309 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicalignments arm64 1.38.2-1 [2133 kB] 193s Get:310 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rjson arm64 0.2.21-1 [142 kB] 193s Get:311 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-restfulr arm64 0.0.15-1 [380 kB] 193s Get:312 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rtracklayer arm64 1.62.0-1 [5104 kB] 193s Get:313 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1817 kB] 193s Get:314 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-bsgenome all 1.70.2-1 [6975 kB] 193s Get:315 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-variantannotation arm64 1.48.1-1 [3526 kB] 194s Get:316 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-protgenerics all 1.34.0-1 [225 kB] 194s Get:317 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ensembldb all 2.26.0+dfsg-1 [1489 kB] 194s Get:318 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biovizbase arm64 1.50.0-1 [2665 kB] 194s Get:319 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-plyr arm64 1.8.9-1 [831 kB] 194s Get:320 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-reshape2 arm64 1.4.4-2build1 [110 kB] 194s Get:321 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-graph arm64 1.80.0-1 [1289 kB] 194s Get:322 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-rbgl arm64 1.78.0+dfsg-1 [541 kB] 194s Get:323 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-organismdbi all 1.44.0+dfsg-1 [456 kB] 194s Get:324 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom all 1.0.5+dfsg-1 [1729 kB] 194s Get:325 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-forcats all 1.0.0-1 [369 kB] 194s Get:326 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 194s Get:327 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 194s Get:328 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 194s Get:329 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 194s Get:330 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-haven arm64 2.5.4-1 [338 kB] 194s Get:331 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-labelled all 2.12.0-2 [312 kB] 194s Get:332 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-broom.helpers all 1.14.0-2 [557 kB] 194s Get:333 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-patchwork all 1.2.0-1 [3161 kB] 194s Get:334 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggstats all 0.5.1-2 [839 kB] 194s Get:335 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ggally all 2.2.1-1 [2022 kB] 194s Get:336 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-ggbio all 1.50.0-1 [2939 kB] 194s Get:337 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 194s Get:338 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 194s Get:339 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 194s Get:340 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 194s Get:341 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 194s Get:342 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 194s Get:343 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 194s Get:344 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 194s Get:345 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 194s Get:346 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 194s Get:347 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 194s Get:348 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 194s Get:349 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 196s Preconfiguring packages ... 196s Fetched 493 MB in 19s (25.7 MB/s) 196s Selecting previously unselected package libc-dev-bin. 196s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74316 files and directories currently installed.) 196s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 196s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 196s Selecting previously unselected package linux-libc-dev:arm64. 196s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 196s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 196s Selecting previously unselected package libcrypt-dev:arm64. 196s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 196s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 196s Selecting previously unselected package libtirpc-dev:arm64. 196s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 196s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 197s Selecting previously unselected package libnsl-dev:arm64. 197s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 197s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 197s Selecting previously unselected package rpcsvc-proto. 197s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 197s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 197s Selecting previously unselected package libc6-dev:arm64. 197s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 197s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 197s Selecting previously unselected package libisl23:arm64. 197s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 197s Unpacking libisl23:arm64 (0.26-3) ... 197s Selecting previously unselected package libmpc3:arm64. 197s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 197s Unpacking libmpc3:arm64 (1.3.1-1) ... 197s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 197s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-13. 197s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-aarch64-linux-gnu. 197s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package cpp. 197s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking cpp (4:13.2.0-7ubuntu1) ... 197s Selecting previously unselected package libcc1-0:arm64. 197s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libgomp1:arm64. 197s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libitm1:arm64. 197s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 197s Selecting previously unselected package libatomic1:arm64. 197s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 197s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libasan8:arm64. 198s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package liblsan0:arm64. 198s Preparing to unpack .../018-liblsan0_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking liblsan0:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libtsan2:arm64. 198s Preparing to unpack .../019-libtsan2_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libtsan2:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libubsan1:arm64. 198s Preparing to unpack .../020-libubsan1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libubsan1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libhwasan0:arm64. 198s Preparing to unpack .../021-libhwasan0_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libhwasan0:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libgcc-13-dev:arm64. 198s Preparing to unpack .../022-libgcc-13-dev_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking libgcc-13-dev:arm64 (13.2.0-17ubuntu2) ... 198s Selecting previously unselected package gcc-13-aarch64-linux-gnu. 198s Preparing to unpack .../023-gcc-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 198s Unpacking gcc-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gcc-13. 199s Preparing to unpack .../024-gcc-13_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking gcc-13 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package gcc-aarch64-linux-gnu. 199s Preparing to unpack .../025-gcc-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gcc-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package gcc. 199s Preparing to unpack .../026-gcc_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking gcc (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package libstdc++-13-dev:arm64. 199s Preparing to unpack .../027-libstdc++-13-dev_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking libstdc++-13-dev:arm64 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13-aarch64-linux-gnu. 199s Preparing to unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-13. 199s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 199s Unpacking g++-13 (13.2.0-17ubuntu2) ... 199s Selecting previously unselected package g++-aarch64-linux-gnu. 199s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package g++. 199s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 199s Unpacking g++ (4:13.2.0-7ubuntu1) ... 199s Selecting previously unselected package build-essential. 199s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 199s Unpacking build-essential (12.10ubuntu1) ... 199s Selecting previously unselected package dctrl-tools. 199s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb ... 199s Unpacking dctrl-tools (2.24-3build2) ... 199s Selecting previously unselected package fonts-dejavu-mono. 199s Preparing to unpack .../034-fonts-dejavu-mono_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-mono (2.37-8) ... 199s Selecting previously unselected package fonts-dejavu-core. 199s Preparing to unpack .../035-fonts-dejavu-core_2.37-8_all.deb ... 199s Unpacking fonts-dejavu-core (2.37-8) ... 199s Selecting previously unselected package fontconfig-config. 199s Preparing to unpack .../036-fontconfig-config_2.15.0-1ubuntu1_arm64.deb ... 199s Unpacking fontconfig-config (2.15.0-1ubuntu1) ... 199s Selecting previously unselected package libfontconfig1:arm64. 199s Preparing to unpack .../037-libfontconfig1_2.15.0-1ubuntu1_arm64.deb ... 199s Unpacking libfontconfig1:arm64 (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package fontconfig. 200s Preparing to unpack .../038-fontconfig_2.15.0-1ubuntu1_arm64.deb ... 200s Unpacking fontconfig (2.15.0-1ubuntu1) ... 200s Selecting previously unselected package fonts-font-awesome. 200s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 200s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 200s Selecting previously unselected package fonts-glyphicons-halflings. 200s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 200s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 200s Selecting previously unselected package fonts-lmodern. 200s Preparing to unpack .../041-fonts-lmodern_2.005-1_all.deb ... 200s Unpacking fonts-lmodern (2.005-1) ... 200s Selecting previously unselected package fonts-mathjax. 200s Preparing to unpack .../042-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 200s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 200s Selecting previously unselected package libgfortran5:arm64. 200s Preparing to unpack .../043-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 200s Unpacking libgfortran5:arm64 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Unpacking libbibtex-parser-perl (1.04+dfsg-1) ... 200s Selecting previously unselected package libblas3:arm64. 200s Preparing to unpack .../054-libblas3_3.12.0-3_arm64.deb ... 200s Unpacking libblas3:arm64 (3.12.0-3) ... 201s Selecting previously unselected package libblas-dev:arm64. 201s Preparing to unpack .../055-libblas-dev_3.12.0-3_arm64.deb ... 201s Unpacking libblas-dev:arm64 (3.12.0-3) ... 201s Selecting previously unselected package libboost1.83-dev:arm64. 201s Preparing to unpack .../056-libboost1.83-dev_1.83.0-2ubuntu1_arm64.deb ... 201s Unpacking libboost1.83-dev:arm64 (1.83.0-2ubuntu1) ... 202s Selecting previously unselected package libboost-dev:arm64. 202s Preparing to unpack .../057-libboost-dev_1.83.0.1ubuntu2_arm64.deb ... 202s Unpacking libboost-dev:arm64 (1.83.0.1ubuntu2) ... 202s Selecting previously unselected package libbz2-dev:arm64. 202s Preparing to unpack .../058-libbz2-dev_1.0.8-5ubuntu1_arm64.deb ... 202s Unpacking libbz2-dev:arm64 (1.0.8-5ubuntu1) ... 202s 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unselected package libjpeg-dev:arm64. 203s Preparing to unpack .../075-libjpeg-dev_8c-2ubuntu11_arm64.deb ... 203s Unpacking libjpeg-dev:arm64 (8c-2ubuntu11) ... 203s Selecting previously unselected package libjs-bootstrap. 203s Preparing to unpack .../076-libjs-bootstrap_3.4.1+dfsg-3_all.deb ... 203s Unpacking libjs-bootstrap (3.4.1+dfsg-3) ... 203s Selecting previously unselected package libjs-popper.js. 203s Preparing to unpack .../077-libjs-popper.js_1.16.1+ds-6_all.deb ... 203s Unpacking libjs-popper.js (1.16.1+ds-6) ... 203s Selecting previously unselected package libjs-bootstrap4. 203s Preparing to unpack .../078-libjs-bootstrap4_4.6.1+dfsg1-4_all.deb ... 203s Unpacking libjs-bootstrap4 (4.6.1+dfsg1-4) ... 204s Selecting previously unselected package libjs-d3. 204s Preparing to unpack .../079-libjs-d3_3.5.17-4_all.deb ... 204s Unpacking libjs-d3 (3.5.17-4) ... 204s Selecting previously unselected package libjs-es5-shim. 204s Preparing to unpack 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Unpacking libsynctex2:arm64 (2023.20230311.66589-9) ... 206s Selecting previously unselected package libtcl8.6:arm64. 206s Preparing to unpack .../117-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 206s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 206s Selecting previously unselected package libteckit0:arm64. 206s Preparing to unpack .../118-libteckit0_2.5.12+ds1-1_arm64.deb ... 206s Unpacking libteckit0:arm64 (2.5.12+ds1-1) ... 206s Selecting previously unselected package libtexlua53-5:arm64. 206s Preparing to unpack .../119-libtexlua53-5_2023.20230311.66589-9_arm64.deb ... 206s Unpacking libtexlua53-5:arm64 (2023.20230311.66589-9) ... 206s Selecting previously unselected package libjbig0:arm64. 206s Preparing to unpack .../120-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 206s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 206s Selecting previously unselected package libwebp7:arm64. 206s Preparing to unpack .../121-libwebp7_1.3.2-0.4_arm64.deb ... 206s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libtiff6:arm64. 206s Preparing to unpack .../122-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 206s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 206s Selecting previously unselected package libxft2:arm64. 206s Preparing to unpack .../123-libxft2_2.3.6-1_arm64.deb ... 206s Unpacking libxft2:arm64 (2.3.6-1) ... 206s Selecting previously unselected package libxss1:arm64. 206s Preparing to unpack .../124-libxss1_1%3a1.2.3-1build2_arm64.deb ... 206s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 206s Selecting previously unselected package libtk8.6:arm64. 206s Preparing to unpack .../125-libtk8.6_8.6.13-2_arm64.deb ... 206s Unpacking libtk8.6:arm64 (8.6.13-2) ... 206s Selecting previously unselected package libxt6:arm64. 206s Preparing to unpack .../126-libxt6_1%3a1.2.1-1.1_arm64.deb ... 206s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 206s Selecting previously unselected package libxmu6:arm64. 206s Preparing to unpack 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206s Preparing to unpack .../133-unzip_6.0-28ubuntu3_arm64.deb ... 206s Unpacking unzip (6.0-28ubuntu3) ... 206s Selecting previously unselected package xdg-utils. 207s Preparing to unpack .../134-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 207s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 207s Selecting previously unselected package r-base-core. 207s Preparing to unpack .../135-r-base-core_4.3.2-1build1_arm64.deb ... 207s Unpacking r-base-core (4.3.2-1build1) ... 207s Selecting previously unselected package r-cran-littler. 207s Preparing to unpack .../136-r-cran-littler_0.3.19-1_arm64.deb ... 207s Unpacking r-cran-littler (0.3.19-1) ... 207s Selecting previously unselected package littler. 207s Preparing to unpack .../137-littler_0.3.19-1_all.deb ... 207s Unpacking littler (0.3.19-1) ... 207s Selecting previously unselected package node-bootstrap-sass. 207s Preparing to unpack .../138-node-bootstrap-sass_3.4.3-2_all.deb ... 207s Unpacking node-bootstrap-sass (3.4.3-2) ... 207s Selecting previously unselected package node-html5shiv. 207s Preparing to unpack .../139-node-html5shiv_3.7.3+dfsg-5_all.deb ... 207s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 207s Selecting previously unselected package node-normalize.css. 207s Preparing to unpack .../140-node-normalize.css_8.0.1-5_all.deb ... 207s Unpacking node-normalize.css (8.0.1-5) ... 207s Selecting previously unselected package pandoc-data. 207s Preparing to unpack .../141-pandoc-data_3.1.3-1_all.deb ... 207s Unpacking pandoc-data (3.1.3-1) ... 207s Selecting previously unselected package pandoc. 207s Preparing to unpack .../142-pandoc_3.1.3+ds-2_arm64.deb ... 207s Unpacking pandoc (3.1.3+ds-2) ... 208s Selecting previously unselected package pkgconf-bin. 208s Preparing to unpack .../143-pkgconf-bin_1.8.1-2_arm64.deb ... 208s Unpacking pkgconf-bin (1.8.1-2) ... 208s Selecting previously unselected package pkgconf:arm64. 208s Preparing to unpack .../144-pkgconf_1.8.1-2_arm64.deb ... 208s Unpacking pkgconf:arm64 (1.8.1-2) ... 208s Selecting previously unselected package pkg-config:arm64. 208s Preparing to unpack .../145-pkg-config_1.8.1-2_arm64.deb ... 208s Unpacking pkg-config:arm64 (1.8.1-2) ... 208s Selecting previously unselected package liblzma-dev:arm64. 208s Preparing to unpack .../146-liblzma-dev_5.4.5-0.3_arm64.deb ... 208s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 208s Selecting previously unselected package r-base-dev. 208s Preparing to unpack .../147-r-base-dev_4.3.2-1build1_all.deb ... 208s Unpacking r-base-dev (4.3.2-1build1) ... 208s Selecting previously unselected package pkg-r-autopkgtest. 208s Preparing to unpack .../148-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 208s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 208s Selecting previously unselected package r-bioc-biocgenerics. 208s Preparing to unpack .../149-r-bioc-biocgenerics_0.48.1-2_all.deb ... 208s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 208s Selecting previously unselected package r-bioc-biobase. 208s Preparing to unpack .../150-r-bioc-biobase_2.62.0-1_arm64.deb ... 208s Unpacking r-bioc-biobase (2.62.0-1) ... 208s Selecting previously unselected package r-bioc-s4vectors. 208s Preparing to unpack .../151-r-bioc-s4vectors_0.40.2+dfsg-1_arm64.deb ... 208s Unpacking r-bioc-s4vectors (0.40.2+dfsg-1) ... 209s Selecting previously unselected package r-bioc-iranges. 209s Preparing to unpack .../152-r-bioc-iranges_2.36.0-1_arm64.deb ... 209s Unpacking r-bioc-iranges (2.36.0-1) ... 209s Selecting previously unselected package r-cran-dbi. 209s Preparing to unpack .../153-r-cran-dbi_1.2.2-1_all.deb ... 209s Unpacking r-cran-dbi (1.2.2-1) ... 209s Selecting previously unselected package r-cran-bit. 209s Preparing to unpack .../154-r-cran-bit_4.0.5-1_arm64.deb ... 209s Unpacking r-cran-bit (4.0.5-1) ... 209s Selecting previously unselected package r-cran-bit64. 209s Preparing to unpack .../155-r-cran-bit64_4.0.5-1_arm64.deb ... 209s Unpacking r-cran-bit64 (4.0.5-1) ... 209s Selecting previously unselected package r-cran-rlang. 209s Preparing to unpack .../156-r-cran-rlang_1.1.3-1_arm64.deb ... 209s Unpacking r-cran-rlang (1.1.3-1) ... 209s Selecting previously unselected package r-cran-cli. 209s Preparing to unpack .../157-r-cran-cli_3.6.2-1_arm64.deb ... 209s Unpacking r-cran-cli (3.6.2-1) ... 209s Selecting previously unselected package r-cran-glue. 209s Preparing to unpack .../158-r-cran-glue_1.7.0-1_arm64.deb ... 209s Unpacking r-cran-glue (1.7.0-1) ... 209s Selecting previously unselected package r-cran-lifecycle. 209s Preparing to unpack .../159-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 209s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 209s Selecting previously unselected package r-cran-vctrs. 209s Preparing to unpack .../160-r-cran-vctrs_0.6.5-1_arm64.deb ... 209s Unpacking r-cran-vctrs (0.6.5-1) ... 209s Selecting previously unselected package r-cran-blob. 209s Preparing to unpack .../161-r-cran-blob_1.2.4-1_all.deb ... 209s Unpacking r-cran-blob (1.2.4-1) ... 209s Selecting previously unselected package r-cran-fastmap. 209s Preparing to unpack .../162-r-cran-fastmap_1.1.1-1_arm64.deb ... 209s Unpacking r-cran-fastmap (1.1.1-1) ... 209s Selecting previously unselected package r-cran-cachem. 209s Preparing to unpack .../163-r-cran-cachem_1.0.8-1_arm64.deb ... 209s Unpacking r-cran-cachem (1.0.8-1) ... 209s Selecting previously unselected package r-cran-memoise. 209s Preparing to unpack .../164-r-cran-memoise_2.0.1-1_all.deb ... 209s Unpacking r-cran-memoise (2.0.1-1) ... 209s Selecting previously unselected package r-cran-pkgconfig. 209s Preparing to unpack .../165-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 209s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 209s Selecting previously unselected package r-cran-plogr. 209s Preparing to unpack .../166-r-cran-plogr_0.2.0-3build1_all.deb ... 209s Unpacking r-cran-plogr (0.2.0-3build1) ... 209s Selecting previously unselected package r-cran-cpp11. 209s Preparing to unpack .../167-r-cran-cpp11_0.4.7-1_all.deb ... 209s Unpacking r-cran-cpp11 (0.4.7-1) ... 209s Selecting previously unselected package r-cran-rsqlite. 209s Preparing to unpack .../168-r-cran-rsqlite_2.3.4-1_arm64.deb ... 209s Unpacking r-cran-rsqlite (2.3.4-1) ... 210s Selecting previously unselected package r-cran-curl. 210s Preparing to unpack .../169-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 210s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 210s Selecting previously unselected package r-cran-jsonlite. 210s Preparing to unpack .../170-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 210s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 210s Selecting previously unselected package r-cran-mime. 210s Preparing to unpack .../171-r-cran-mime_0.12-1_arm64.deb ... 210s Unpacking r-cran-mime (0.12-1) ... 210s Selecting previously unselected package r-cran-sys. 210s Preparing to unpack .../172-r-cran-sys_3.4.2-1_arm64.deb ... 210s Unpacking r-cran-sys (3.4.2-1) ... 210s Selecting previously unselected package r-cran-askpass. 210s Preparing to unpack .../173-r-cran-askpass_1.2.0-1_arm64.deb ... 210s Unpacking r-cran-askpass (1.2.0-1) ... 210s Selecting previously unselected package r-cran-openssl. 210s Preparing to unpack .../174-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 210s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 210s Selecting previously unselected package r-cran-r6. 210s Preparing to unpack .../175-r-cran-r6_2.5.1-1_all.deb ... 210s Unpacking r-cran-r6 (2.5.1-1) ... 210s Selecting previously unselected package r-cran-httr. 210s Preparing to unpack .../176-r-cran-httr_1.4.7+dfsg-1_all.deb ... 210s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 210s Selecting previously unselected package r-cran-png. 210s Preparing to unpack .../177-r-cran-png_0.1-8-1_arm64.deb ... 210s Unpacking r-cran-png (0.1-8-1) ... 210s Selecting previously unselected package r-bioc-zlibbioc. 210s Preparing to unpack .../178-r-bioc-zlibbioc_1.48.0+dfsg-1_all.deb ... 210s Unpacking r-bioc-zlibbioc (1.48.0+dfsg-1) ... 210s Selecting previously unselected package r-bioc-xvector. 210s Preparing to unpack .../179-r-bioc-xvector_0.42.0-1_arm64.deb ... 210s Unpacking r-bioc-xvector (0.42.0-1) ... 210s Selecting previously unselected package r-cran-bitops. 210s Preparing to unpack .../180-r-cran-bitops_1.0-7-1_arm64.deb ... 210s Unpacking r-cran-bitops (1.0-7-1) ... 210s Selecting previously unselected package r-cran-rcurl. 210s Preparing to unpack .../181-r-cran-rcurl_1.98-1.14+dfsg-1_arm64.deb ... 210s Unpacking r-cran-rcurl (1.98-1.14+dfsg-1) ... 210s Selecting previously unselected package r-bioc-genomeinfodbdata. 210s Preparing to unpack .../182-r-bioc-genomeinfodbdata_1.2.11-2_all.deb ... 210s Unpacking r-bioc-genomeinfodbdata (1.2.11-2) ... 210s Selecting previously unselected package r-bioc-genomeinfodb. 210s Preparing to unpack .../183-r-bioc-genomeinfodb_1.38.6+dfsg-1_all.deb ... 210s Unpacking r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 210s Selecting previously unselected package r-cran-crayon. 210s Preparing to unpack .../184-r-cran-crayon_1.5.2-1_all.deb ... 210s Unpacking r-cran-crayon (1.5.2-1) ... 210s Selecting previously unselected package r-bioc-biostrings. 211s Preparing to unpack .../185-r-bioc-biostrings_2.70.2+dfsg-1_arm64.deb ... 211s Unpacking r-bioc-biostrings (2.70.2+dfsg-1) ... 211s Selecting previously unselected package r-bioc-keggrest. 211s Preparing to unpack .../186-r-bioc-keggrest_1.42.0+dfsg-1_all.deb ... 211s Unpacking r-bioc-keggrest (1.42.0+dfsg-1) ... 211s Selecting previously unselected package r-bioc-annotationdbi. 211s Preparing to unpack .../187-r-bioc-annotationdbi_1.64.1-1_all.deb ... 211s Unpacking r-bioc-annotationdbi (1.64.1-1) ... 211s Selecting previously unselected package r-bioc-genomicranges. 211s Preparing to unpack .../188-r-bioc-genomicranges_1.54.1+dfsg-1_arm64.deb ... 211s Unpacking r-bioc-genomicranges (1.54.1+dfsg-1) ... 211s Selecting previously unselected package r-cran-lazyeval. 211s Preparing to unpack .../189-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 211s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 211s Selecting previously unselected package r-bioc-annotationfilter. 211s Preparing to unpack .../190-r-bioc-annotationfilter_1.26.0+dfsg-1_all.deb ... 211s Unpacking r-bioc-annotationfilter (1.26.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-generics. 211s Preparing to unpack .../191-r-cran-generics_0.1.3-1_all.deb ... 211s Unpacking r-cran-generics (0.1.3-1) ... 211s Selecting previously unselected package r-cran-magrittr. 211s Preparing to unpack .../192-r-cran-magrittr_2.0.3-1_arm64.deb ... 211s Unpacking r-cran-magrittr (2.0.3-1) ... 211s Selecting previously unselected package r-cran-fansi. 211s Preparing to unpack .../193-r-cran-fansi_1.0.5-1_arm64.deb ... 211s Unpacking r-cran-fansi (1.0.5-1) ... 211s Selecting previously unselected package r-cran-utf8. 211s Preparing to unpack .../194-r-cran-utf8_1.2.4-1_arm64.deb ... 211s Unpacking r-cran-utf8 (1.2.4-1) ... 211s Selecting previously unselected package r-cran-pillar. 211s Preparing to unpack .../195-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 211s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-tibble. 211s Preparing to unpack .../196-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 211s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 211s Selecting previously unselected package r-cran-withr. 211s Preparing to unpack .../197-r-cran-withr_2.5.0-1_all.deb ... 211s Unpacking r-cran-withr (2.5.0-1) ... 211s Selecting previously unselected package r-cran-tidyselect. 211s Preparing to unpack .../198-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 211s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-dplyr. 211s Preparing to unpack .../199-r-cran-dplyr_1.1.4-1_arm64.deb ... 211s Unpacking r-cran-dplyr (1.1.4-1) ... 211s Selecting previously unselected package r-cran-purrr. 211s Preparing to unpack .../200-r-cran-purrr_1.0.2-1_arm64.deb ... 211s Unpacking r-cran-purrr (1.0.2-1) ... 211s Selecting previously unselected package r-cran-stringi. 211s Preparing to unpack .../201-r-cran-stringi_1.8.3-1_arm64.deb ... 211s Unpacking r-cran-stringi (1.8.3-1) ... 211s Selecting previously unselected package r-cran-stringr. 212s Preparing to unpack .../202-r-cran-stringr_1.5.1-1_all.deb ... 212s Unpacking r-cran-stringr (1.5.1-1) ... 212s Selecting previously unselected package r-cran-tidyr. 212s Preparing to unpack .../203-r-cran-tidyr_1.3.1-1_arm64.deb ... 212s Unpacking r-cran-tidyr (1.3.1-1) ... 212s Selecting previously unselected package r-cran-dbplyr. 212s Preparing to unpack .../204-r-cran-dbplyr_2.4.0+dfsg-1_all.deb ... 212s Unpacking r-cran-dbplyr (2.4.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-filelock. 212s Preparing to unpack .../205-r-cran-filelock_1.0.3-1_arm64.deb ... 212s Unpacking r-cran-filelock (1.0.3-1) ... 212s Selecting previously unselected package r-bioc-biocfilecache. 212s Preparing to unpack .../206-r-bioc-biocfilecache_2.10.1+dfsg-1_all.deb ... 212s Unpacking r-bioc-biocfilecache (2.10.1+dfsg-1) ... 212s Selecting previously unselected package r-bioc-biocio. 212s Preparing to unpack .../207-r-bioc-biocio_1.12.0+dfsg-1_all.deb ... 212s Unpacking r-bioc-biocio (1.12.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-formatr. 212s Preparing to unpack .../208-r-cran-formatr_1.14-1_all.deb ... 212s Unpacking r-cran-formatr (1.14-1) ... 212s Selecting previously unselected package r-cran-lambda.r. 212s Preparing to unpack .../209-r-cran-lambda.r_1.2.4-2build1_all.deb ... 212s Unpacking r-cran-lambda.r (1.2.4-2build1) ... 212s Selecting previously unselected package r-cran-futile.options. 212s Preparing to unpack .../210-r-cran-futile.options_1.0.1-3build1_all.deb ... 212s Unpacking r-cran-futile.options (1.0.1-3build1) ... 212s Selecting previously unselected package r-cran-futile.logger. 212s Preparing to unpack .../211-r-cran-futile.logger_1.4.3-4build1_all.deb ... 212s Unpacking r-cran-futile.logger (1.4.3-4build1) ... 212s Selecting previously unselected package r-cran-snow. 212s Preparing to unpack .../212-r-cran-snow_1%3a0.4.4-2_all.deb ... 212s Unpacking r-cran-snow (1:0.4.4-2) ... 212s Selecting previously unselected package r-cran-codetools. 212s Preparing to unpack .../213-r-cran-codetools_0.2-19-1_all.deb ... 212s Unpacking r-cran-codetools (0.2-19-1) ... 212s Selecting previously unselected package r-cran-bh. 212s Preparing to unpack .../214-r-cran-bh_1.84.0-1_all.deb ... 212s Unpacking r-cran-bh (1.84.0-1) ... 212s Selecting previously unselected package r-bioc-biocparallel. 212s Preparing to unpack .../215-r-bioc-biocparallel_1.36.0-1_arm64.deb ... 212s Unpacking r-bioc-biocparallel (1.36.0-1) ... 212s Selecting previously unselected package r-cran-base64enc. 212s Preparing to unpack .../216-r-cran-base64enc_0.1-3-3_arm64.deb ... 212s Unpacking r-cran-base64enc (0.1-3-3) ... 212s Selecting previously unselected package r-cran-digest. 212s Preparing to unpack .../217-r-cran-digest_0.6.34-1_arm64.deb ... 212s Unpacking r-cran-digest (0.6.34-1) ... 212s Selecting previously unselected package r-cran-ellipsis. 212s Preparing to unpack .../218-r-cran-ellipsis_0.3.2-2_arm64.deb ... 212s Unpacking r-cran-ellipsis (0.3.2-2) ... 212s Selecting previously unselected package r-cran-htmltools. 212s Preparing to unpack .../219-r-cran-htmltools_0.5.7-1_arm64.deb ... 212s Unpacking r-cran-htmltools (0.5.7-1) ... 212s Selecting previously unselected package r-cran-evaluate. 212s Preparing to unpack .../220-r-cran-evaluate_0.23-1_all.deb ... 212s Unpacking r-cran-evaluate (0.23-1) ... 212s Selecting previously unselected package r-cran-xfun. 212s Preparing to unpack .../221-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 212s Unpacking r-cran-xfun (0.41+dfsg-1) ... 212s Selecting previously unselected package r-cran-highr. 212s Preparing to unpack .../222-r-cran-highr_0.10+dfsg-1_all.deb ... 212s Unpacking r-cran-highr (0.10+dfsg-1) ... 213s Selecting previously unselected package r-cran-yaml. 213s Preparing to unpack .../223-r-cran-yaml_2.3.8-1_arm64.deb ... 213s Unpacking r-cran-yaml (2.3.8-1) ... 213s Selecting previously unselected package libjs-mathjax. 213s Preparing to unpack .../224-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 213s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 213s Selecting previously unselected package r-cran-knitr. 213s Preparing to unpack .../225-r-cran-knitr_1.45+dfsg-1_all.deb ... 213s Unpacking r-cran-knitr (1.45+dfsg-1) ... 213s Selecting previously unselected package r-cran-jquerylib. 213s Preparing to unpack .../226-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 213s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 213s Selecting previously unselected package r-cran-fs. 213s Preparing to unpack .../227-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 213s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 213s Selecting previously unselected package r-cran-rappdirs. 213s Preparing to unpack .../228-r-cran-rappdirs_0.3.3-1_arm64.deb ... 213s Unpacking r-cran-rappdirs (0.3.3-1) ... 213s Selecting previously unselected package r-cran-sass. 213s Preparing to unpack .../229-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 213s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 213s Selecting previously unselected package r-cran-bslib. 213s Preparing to unpack .../230-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 213s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-fontawesome. 214s Preparing to unpack .../231-r-cran-fontawesome_0.5.2-1_all.deb ... 214s Unpacking r-cran-fontawesome (0.5.2-1) ... 214s Selecting previously unselected package r-cran-tinytex. 214s Preparing to unpack .../232-r-cran-tinytex_0.49-1_all.deb ... 214s Unpacking r-cran-tinytex (0.49-1) ... 214s Selecting previously unselected package libjs-modernizr. 214s Preparing to unpack .../233-libjs-modernizr_2.6.2+ds1-5_all.deb ... 214s Unpacking libjs-modernizr (2.6.2+ds1-5) ... 214s Selecting previously unselected package r-cran-pkgkitten. 214s Preparing to unpack .../234-r-cran-pkgkitten_0.2.3-1_all.deb ... 214s Unpacking r-cran-pkgkitten (0.2.3-1) ... 214s Selecting previously unselected package r-cran-rcpp. 214s Preparing to unpack .../235-r-cran-rcpp_1.0.12-1_arm64.deb ... 214s Unpacking r-cran-rcpp (1.0.12-1) ... 214s Selecting previously unselected package r-cran-later. 214s Preparing to unpack .../236-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 214s Unpacking r-cran-later (1.3.2+dfsg-1) ... 214s Selecting previously unselected package r-cran-promises. 214s Preparing to unpack .../237-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 214s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 214s Selecting previously unselected package r-cran-httpuv. 214s Preparing to unpack .../238-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 214s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 214s Selecting previously unselected package r-cran-xtable. 214s Preparing to unpack .../239-r-cran-xtable_1%3a1.8-4-2_all.deb ... 214s Unpacking r-cran-xtable (1:1.8-4-2) ... 214s Selecting previously unselected package r-cran-sourcetools. 214s Preparing to unpack .../240-r-cran-sourcetools_0.1.7-1-1_arm64.deb ... 214s Unpacking r-cran-sourcetools (0.1.7-1-1) ... 214s Selecting previously unselected package r-cran-commonmark. 214s Preparing to unpack .../241-r-cran-commonmark_1.9.1-1_arm64.deb ... 214s Unpacking r-cran-commonmark (1.9.1-1) ... 214s Selecting previously unselected package libjs-twitter-bootstrap-datepicker. 214s Preparing to unpack .../242-libjs-twitter-bootstrap-datepicker_1.3.1+dfsg1-4.1_all.deb ... 214s Unpacking libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... 214s Selecting previously unselected package r-cran-shiny. 214s Preparing to unpack .../243-r-cran-shiny_1.8.0+dfsg-1_all.deb ... 214s Unpacking r-cran-shiny (1.8.0+dfsg-1) ... 214s Selecting previously unselected package r-cran-rmarkdown. 214s Preparing to unpack .../244-r-cran-rmarkdown_2.25+dfsg-3_all.deb ... 214s Unpacking r-cran-rmarkdown (2.25+dfsg-3) ... 214s Selecting previously unselected package r-cran-bookdown. 214s Preparing to unpack .../245-r-cran-bookdown_0.37+dfsg-1_all.deb ... 214s Unpacking r-cran-bookdown (0.37+dfsg-1) ... 214s Selecting previously unselected package r-cran-biocmanager. 215s Preparing to unpack .../246-r-cran-biocmanager_1.30.22+dfsg-2_all.deb ... 215s Unpacking r-cran-biocmanager (1.30.22+dfsg-2) ... 215s Selecting previously unselected package tex-common. 215s Preparing to unpack .../247-tex-common_6.18_all.deb ... 215s Unpacking tex-common (6.18) ... 215s Selecting previously unselected package t1utils. 215s Preparing to unpack .../248-t1utils_1.41-4build2_arm64.deb ... 215s Unpacking t1utils (1.41-4build2) ... 215s Selecting previously unselected package texlive-binaries. 215s Preparing to unpack .../249-texlive-binaries_2023.20230311.66589-9_arm64.deb ... 215s Unpacking texlive-binaries (2023.20230311.66589-9) ... 215s Selecting previously unselected package texlive-base. 215s Preparing to unpack .../250-texlive-base_2023.20240207-1_all.deb ... 215s Unpacking texlive-base (2023.20240207-1) ... 216s Selecting previously unselected package texlive-latex-base. 216s Preparing to unpack .../251-texlive-latex-base_2023.20240207-1_all.deb ... 216s Unpacking texlive-latex-base (2023.20240207-1) ... 216s Selecting previously unselected package texlive-bibtex-extra. 217s Preparing to unpack .../252-texlive-bibtex-extra_2023.20240207-1_all.deb ... 217s Unpacking texlive-bibtex-extra (2023.20240207-1) ... 219s Selecting previously unselected package r-bioc-biocstyle. 219s Preparing to unpack .../253-r-bioc-biocstyle_2.30.0+dfsg-1_all.deb ... 219s Unpacking r-bioc-biocstyle (2.30.0+dfsg-1) ... 219s Selecting previously unselected package r-cran-xml. 219s Preparing to unpack .../254-r-cran-xml_3.99-0.16.1-1_arm64.deb ... 219s Unpacking r-cran-xml (3.99-0.16.1-1) ... 220s Selecting previously unselected package r-cran-hms. 220s Preparing to unpack .../255-r-cran-hms_1.1.3-1_all.deb ... 220s Unpacking r-cran-hms (1.1.3-1) ... 220s Selecting previously unselected package r-cran-prettyunits. 220s Preparing to unpack .../256-r-cran-prettyunits_1.2.0-1_all.deb ... 220s Unpacking r-cran-prettyunits (1.2.0-1) ... 220s Selecting previously unselected package r-cran-progress. 220s Preparing to unpack .../257-r-cran-progress_1.2.3-1_all.deb ... 220s Unpacking r-cran-progress (1.2.3-1) ... 220s Selecting previously unselected package r-cran-xml2. 220s Preparing to unpack .../258-r-cran-xml2_1.3.6-1_arm64.deb ... 220s Unpacking r-cran-xml2 (1.3.6-1) ... 220s Selecting previously unselected package r-bioc-biomart. 220s Preparing to unpack .../259-r-bioc-biomart_2.58.2+dfsg-1_all.deb ... 220s Unpacking r-bioc-biomart (2.58.2+dfsg-1) ... 220s Selecting previously unselected package r-cran-farver. 220s Preparing to unpack .../260-r-cran-farver_2.1.1-1_arm64.deb ... 220s Unpacking r-cran-farver (2.1.1-1) ... 220s Selecting previously unselected package r-cran-labeling. 220s Preparing to unpack .../261-r-cran-labeling_0.4.3-1_all.deb ... 220s Unpacking r-cran-labeling (0.4.3-1) ... 220s Selecting previously unselected package r-cran-colorspace. 220s Preparing to unpack .../262-r-cran-colorspace_2.1-0+dfsg-1_arm64.deb ... 220s Unpacking r-cran-colorspace (2.1-0+dfsg-1) ... 220s Selecting previously unselected package r-cran-munsell. 220s Preparing to unpack .../263-r-cran-munsell_0.5.0-2build1_all.deb ... 220s Unpacking r-cran-munsell (0.5.0-2build1) ... 220s Selecting previously unselected package r-cran-rcolorbrewer. 220s Preparing to unpack .../264-r-cran-rcolorbrewer_1.1-3-1build1_all.deb ... 220s Unpacking r-cran-rcolorbrewer (1.1-3-1build1) ... 220s Selecting previously unselected package r-cran-viridislite. 220s Preparing to unpack .../265-r-cran-viridislite_0.4.2-2_all.deb ... 220s Unpacking r-cran-viridislite (0.4.2-2) ... 220s Selecting previously unselected package r-cran-scales. 220s Preparing to unpack .../266-r-cran-scales_1.3.0-1_all.deb ... 220s Unpacking r-cran-scales (1.3.0-1) ... 220s Selecting previously unselected package r-cran-gtable. 220s Preparing to unpack .../267-r-cran-gtable_0.3.4+dfsg-1_all.deb ... 220s Unpacking r-cran-gtable (0.3.4+dfsg-1) ... 221s Selecting previously unselected package r-cran-isoband. 221s Preparing to unpack .../268-r-cran-isoband_0.2.7-1_arm64.deb ... 221s Unpacking r-cran-isoband (0.2.7-1) ... 221s Selecting previously unselected package r-cran-mass. 221s Preparing to unpack .../269-r-cran-mass_7.3-60.0.1-1_arm64.deb ... 221s Unpacking r-cran-mass (7.3-60.0.1-1) ... 221s Selecting previously unselected package r-cran-lattice. 221s Preparing to unpack .../270-r-cran-lattice_0.22-5-1_arm64.deb ... 221s Unpacking r-cran-lattice (0.22-5-1) ... 221s Selecting previously unselected package r-cran-nlme. 221s Preparing to unpack .../271-r-cran-nlme_3.1.164-1_arm64.deb ... 221s Unpacking r-cran-nlme (3.1.164-1) ... 221s Selecting previously unselected package r-cran-matrix. 221s Preparing to unpack .../272-r-cran-matrix_1.6-5-1_arm64.deb ... 221s Unpacking r-cran-matrix (1.6-5-1) ... 221s Selecting previously unselected package r-cran-mgcv. 221s Preparing to unpack .../273-r-cran-mgcv_1.9-1-1_arm64.deb ... 221s Unpacking r-cran-mgcv (1.9-1-1) ... 221s Selecting previously unselected package r-cran-ggplot2. 221s Preparing to unpack .../274-r-cran-ggplot2_3.4.4+dfsg-1_all.deb ... 221s Unpacking r-cran-ggplot2 (3.4.4+dfsg-1) ... 221s Selecting previously unselected package r-cran-cluster. 221s Preparing to unpack .../275-r-cran-cluster_2.1.6-1_arm64.deb ... 221s Unpacking r-cran-cluster (2.1.6-1) ... 221s Selecting previously unselected package r-cran-survival. 221s Preparing to unpack .../276-r-cran-survival_3.5-8-1_arm64.deb ... 221s Unpacking r-cran-survival (3.5-8-1) ... 221s Selecting previously unselected package r-cran-rpart. 221s Preparing to unpack .../277-r-cran-rpart_4.1.23-1_arm64.deb ... 221s Unpacking r-cran-rpart (4.1.23-1) ... 221s Selecting previously unselected package r-cran-nnet. 221s Preparing to unpack .../278-r-cran-nnet_7.3-19-2_arm64.deb ... 221s Unpacking r-cran-nnet (7.3-19-2) ... 221s Selecting previously unselected package r-cran-foreign. 222s Preparing to unpack .../279-r-cran-foreign_0.8.86-1_arm64.deb ... 222s Unpacking r-cran-foreign (0.8.86-1) ... 222s Selecting previously unselected package r-cran-gridextra. 222s Preparing to unpack .../280-r-cran-gridextra_2.3-3build1_all.deb ... 222s Unpacking r-cran-gridextra (2.3-3build1) ... 222s Selecting previously unselected package r-cran-data.table. 222s Preparing to unpack .../281-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 222s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 222s Selecting previously unselected package r-cran-backports. 222s Preparing to unpack .../282-r-cran-backports_1.4.1-1_arm64.deb ... 222s Unpacking r-cran-backports (1.4.1-1) ... 222s Selecting previously unselected package r-cran-checkmate. 222s Preparing to unpack .../283-r-cran-checkmate_2.3.1-1_arm64.deb ... 222s Unpacking r-cran-checkmate (2.3.1-1) ... 222s Selecting previously unselected package r-cran-htmlwidgets. 222s Preparing to unpack .../284-r-cran-htmlwidgets_1.6.4+dfsg-1_all.deb ... 222s Unpacking r-cran-htmlwidgets (1.6.4+dfsg-1) ... 222s Selecting previously unselected package r-cran-rstudioapi. 222s Preparing to unpack .../285-r-cran-rstudioapi_0.15.0-1_all.deb ... 222s Unpacking r-cran-rstudioapi (0.15.0-1) ... 222s Selecting previously unselected package r-cran-htmltable. 222s Preparing to unpack .../286-r-cran-htmltable_2.4.2-1_all.deb ... 222s Unpacking r-cran-htmltable (2.4.2-1) ... 222s Selecting previously unselected package r-cran-viridis. 222s Preparing to unpack .../287-r-cran-viridis_0.6.5-1_all.deb ... 222s Unpacking r-cran-viridis (0.6.5-1) ... 222s Selecting previously unselected package r-cran-formula. 222s Preparing to unpack .../288-r-cran-formula_1.2-5-1_all.deb ... 222s Unpacking r-cran-formula (1.2-5-1) ... 222s Selecting previously unselected package r-cran-chron. 222s Preparing to unpack .../289-r-cran-chron_2.3-61-2_arm64.deb ... 222s Unpacking r-cran-chron (2.3-61-2) ... 222s Selecting previously unselected package r-cran-jpeg. 223s Preparing to unpack .../290-r-cran-jpeg_0.1-10-1_arm64.deb ... 223s Unpacking r-cran-jpeg (0.1-10-1) ... 223s Selecting previously unselected package r-cran-deldir. 223s Preparing to unpack .../291-r-cran-deldir_2.0-4-1_arm64.deb ... 223s Unpacking r-cran-deldir (2.0-4-1) ... 223s Selecting previously unselected package r-cran-rcppeigen. 223s Preparing to unpack .../292-r-cran-rcppeigen_0.3.3.9.4-1_arm64.deb ... 223s Unpacking r-cran-rcppeigen (0.3.3.9.4-1) ... 223s Selecting previously unselected package r-cran-interp. 223s Preparing to unpack .../293-r-cran-interp_1.1-6-1_arm64.deb ... 223s Unpacking r-cran-interp (1.1-6-1) ... 223s Selecting previously unselected package r-cran-latticeextra. 223s Preparing to unpack .../294-r-cran-latticeextra_0.6-30-1_all.deb ... 223s Unpacking r-cran-latticeextra (0.6-30-1) ... 223s Selecting previously unselected package r-cran-acepack. 223s Preparing to unpack .../295-r-cran-acepack_1.4.2-1_arm64.deb ... 223s Unpacking r-cran-acepack (1.4.2-1) ... 223s Selecting previously unselected package r-cran-hmisc. 223s Preparing to unpack .../296-r-cran-hmisc_5.1-1-1_arm64.deb ... 223s Unpacking r-cran-hmisc (5.1-1-1) ... 223s Selecting previously unselected package r-cran-dichromat. 223s Preparing to unpack .../297-r-cran-dichromat_1%3a2.0-0.1-1_all.deb ... 223s Unpacking r-cran-dichromat (1:2.0-0.1-1) ... 223s Selecting previously unselected package r-cran-matrixstats. 223s Preparing to unpack .../298-r-cran-matrixstats_1.2.0-1_arm64.deb ... 223s Unpacking r-cran-matrixstats (1.2.0-1) ... 223s Selecting previously unselected package r-bioc-matrixgenerics. 223s Preparing to unpack .../299-r-bioc-matrixgenerics_1.14.0-1_all.deb ... 223s Unpacking r-bioc-matrixgenerics (1.14.0-1) ... 223s Selecting previously unselected package r-cran-abind. 223s Preparing to unpack .../300-r-cran-abind_1.4-5-2_all.deb ... 223s Unpacking r-cran-abind (1.4-5-2) ... 224s Selecting previously unselected package r-bioc-s4arrays. 224s Preparing to unpack .../301-r-bioc-s4arrays_1.2.0+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-s4arrays (1.2.0+dfsg-1) ... 224s Selecting previously unselected package r-bioc-sparsearray. 224s Preparing to unpack .../302-r-bioc-sparsearray_1.2.4+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-sparsearray (1.2.4+dfsg-1) ... 224s Selecting previously unselected package r-bioc-delayedarray. 224s Preparing to unpack .../303-r-bioc-delayedarray_0.28.0+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-delayedarray (0.28.0+dfsg-1) ... 224s Selecting previously unselected package r-bioc-summarizedexperiment. 224s Preparing to unpack .../304-r-bioc-summarizedexperiment_1.32.0+dfsg-1_all.deb ... 224s Unpacking r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 224s Selecting previously unselected package r-bioc-rhtslib. 224s Preparing to unpack .../305-r-bioc-rhtslib_2.4.1+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-rhtslib (2.4.1+dfsg-1) ... 224s Selecting previously unselected package r-bioc-rsamtools. 224s Preparing to unpack .../306-r-bioc-rsamtools_2.18.0+dfsg-1_arm64.deb ... 224s Unpacking r-bioc-rsamtools (2.18.0+dfsg-1) ... 224s Selecting previously unselected package r-bioc-genomicalignments. 224s Preparing to unpack .../307-r-bioc-genomicalignments_1.38.2-1_arm64.deb ... 224s Unpacking r-bioc-genomicalignments (1.38.2-1) ... 224s Selecting previously unselected package r-cran-rjson. 224s Preparing to unpack .../308-r-cran-rjson_0.2.21-1_arm64.deb ... 224s Unpacking r-cran-rjson (0.2.21-1) ... 224s Selecting previously unselected package r-cran-restfulr. 224s Preparing to unpack .../309-r-cran-restfulr_0.0.15-1_arm64.deb ... 224s Unpacking r-cran-restfulr (0.0.15-1) ... 224s Selecting previously unselected package r-bioc-rtracklayer. 224s Preparing to unpack .../310-r-bioc-rtracklayer_1.62.0-1_arm64.deb ... 224s Unpacking r-bioc-rtracklayer (1.62.0-1) ... 224s Selecting previously unselected package r-bioc-genomicfeatures. 224s Preparing to unpack .../311-r-bioc-genomicfeatures_1.54.1+dfsg-1_all.deb ... 224s Unpacking r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 225s Selecting previously unselected package r-bioc-bsgenome. 225s Preparing to unpack .../312-r-bioc-bsgenome_1.70.2-1_all.deb ... 225s Unpacking r-bioc-bsgenome (1.70.2-1) ... 225s Selecting previously unselected package r-bioc-variantannotation. 225s Preparing to unpack .../313-r-bioc-variantannotation_1.48.1-1_arm64.deb ... 225s Unpacking r-bioc-variantannotation (1.48.1-1) ... 225s Selecting previously unselected package r-bioc-protgenerics. 225s Preparing to unpack .../314-r-bioc-protgenerics_1.34.0-1_all.deb ... 225s Unpacking r-bioc-protgenerics (1.34.0-1) ... 225s Selecting previously unselected package r-bioc-ensembldb. 225s Preparing to unpack .../315-r-bioc-ensembldb_2.26.0+dfsg-1_all.deb ... 225s Unpacking r-bioc-ensembldb (2.26.0+dfsg-1) ... 225s Selecting previously unselected package r-bioc-biovizbase. 225s Preparing to unpack .../316-r-bioc-biovizbase_1.50.0-1_arm64.deb ... 225s Unpacking r-bioc-biovizbase (1.50.0-1) ... 225s Selecting previously unselected package r-cran-plyr. 225s Preparing to unpack .../317-r-cran-plyr_1.8.9-1_arm64.deb ... 225s Unpacking r-cran-plyr (1.8.9-1) ... 225s Selecting previously unselected package r-cran-reshape2. 225s Preparing to unpack .../318-r-cran-reshape2_1.4.4-2build1_arm64.deb ... 225s Unpacking r-cran-reshape2 (1.4.4-2build1) ... 225s Selecting previously unselected package r-bioc-graph. 225s Preparing to unpack .../319-r-bioc-graph_1.80.0-1_arm64.deb ... 225s Unpacking r-bioc-graph (1.80.0-1) ... 225s Selecting previously unselected package r-bioc-rbgl. 225s Preparing to unpack .../320-r-bioc-rbgl_1.78.0+dfsg-1_arm64.deb ... 225s Unpacking r-bioc-rbgl (1.78.0+dfsg-1) ... 225s Selecting previously unselected package r-bioc-organismdbi. 225s Preparing to unpack .../321-r-bioc-organismdbi_1.44.0+dfsg-1_all.deb ... 225s Unpacking r-bioc-organismdbi (1.44.0+dfsg-1) ... 225s Selecting previously unselected package r-cran-broom. 225s Preparing to unpack .../322-r-cran-broom_1.0.5+dfsg-1_all.deb ... 225s Unpacking r-cran-broom (1.0.5+dfsg-1) ... 225s Selecting previously unselected package r-cran-forcats. 226s Preparing to unpack .../323-r-cran-forcats_1.0.0-1_all.deb ... 226s Unpacking r-cran-forcats (1.0.0-1) ... 226s Selecting previously unselected package r-cran-clipr. 226s Preparing to unpack .../324-r-cran-clipr_0.8.0-1_all.deb ... 226s Unpacking r-cran-clipr (0.8.0-1) ... 226s Selecting previously unselected package r-cran-tzdb. 226s Preparing to unpack .../325-r-cran-tzdb_0.4.0-2_arm64.deb ... 226s Unpacking r-cran-tzdb (0.4.0-2) ... 226s Selecting previously unselected package r-cran-vroom. 226s Preparing to unpack .../326-r-cran-vroom_1.6.5-1_arm64.deb ... 226s Unpacking r-cran-vroom (1.6.5-1) ... 226s Selecting previously unselected package r-cran-readr. 226s Preparing to unpack .../327-r-cran-readr_2.1.5-1_arm64.deb ... 226s Unpacking r-cran-readr (2.1.5-1) ... 226s Selecting previously unselected package r-cran-haven. 226s Preparing to unpack .../328-r-cran-haven_2.5.4-1_arm64.deb ... 226s Unpacking r-cran-haven (2.5.4-1) ... 226s Selecting previously unselected package r-cran-labelled. 226s Preparing to unpack .../329-r-cran-labelled_2.12.0-2_all.deb ... 226s Unpacking r-cran-labelled (2.12.0-2) ... 226s Selecting previously unselected package r-cran-broom.helpers. 227s Preparing to unpack .../330-r-cran-broom.helpers_1.14.0-2_all.deb ... 227s Unpacking r-cran-broom.helpers (1.14.0-2) ... 227s Selecting previously unselected package r-cran-patchwork. 227s Preparing to unpack .../331-r-cran-patchwork_1.2.0-1_all.deb ... 227s Unpacking r-cran-patchwork (1.2.0-1) ... 227s Selecting previously unselected package r-cran-ggstats. 227s Preparing to unpack .../332-r-cran-ggstats_0.5.1-2_all.deb ... 227s Unpacking r-cran-ggstats (0.5.1-2) ... 227s Selecting previously unselected package r-cran-ggally. 227s Preparing to unpack .../333-r-cran-ggally_2.2.1-1_all.deb ... 227s Unpacking r-cran-ggally (2.2.1-1) ... 227s Selecting previously unselected package r-bioc-ggbio. 227s Preparing to unpack .../334-r-bioc-ggbio_1.50.0-1_all.deb ... 227s Unpacking r-bioc-ggbio (1.50.0-1) ... 227s Selecting previously unselected package r-cran-brio. 227s Preparing to unpack .../335-r-cran-brio_1.1.4-1_arm64.deb ... 227s Unpacking r-cran-brio (1.1.4-1) ... 227s Selecting previously unselected package r-cran-ps. 227s Preparing to unpack .../336-r-cran-ps_1.7.6-1_arm64.deb ... 227s Unpacking r-cran-ps (1.7.6-1) ... 227s Selecting previously unselected package r-cran-processx. 227s Preparing to unpack .../337-r-cran-processx_3.8.3-1_arm64.deb ... 227s Unpacking r-cran-processx (3.8.3-1) ... 227s Selecting previously unselected package r-cran-callr. 228s Preparing to unpack .../338-r-cran-callr_3.7.3-2_all.deb ... 228s Unpacking r-cran-callr (3.7.3-2) ... 228s Selecting previously unselected package r-cran-desc. 228s Preparing to unpack .../339-r-cran-desc_1.4.3-1_all.deb ... 228s Unpacking r-cran-desc (1.4.3-1) ... 228s Selecting previously unselected package r-cran-diffobj. 228s Preparing to unpack .../340-r-cran-diffobj_0.3.5-1_arm64.deb ... 228s Unpacking r-cran-diffobj (0.3.5-1) ... 228s Selecting previously unselected package r-cran-pkgbuild. 229s Preparing to unpack .../341-r-cran-pkgbuild_1.4.3-1_all.deb ... 229s Unpacking r-cran-pkgbuild (1.4.3-1) ... 229s Selecting previously unselected package r-cran-rprojroot. 229s Preparing to unpack .../342-r-cran-rprojroot_2.0.4-1_all.deb ... 229s Unpacking 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239s Setting up r-cran-pkgconfig (2.0.3-2build1) ... 239s Setting up r-cran-utf8 (1.2.4-1) ... 239s Setting up r-cran-colorspace (2.1-0+dfsg-1) ... 239s Setting up r-cran-stringi (1.8.3-1) ... 239s Setting up texlive-latex-base (2023.20240207-1) ... 239s Setting up r-cran-cpp11 (0.4.7-1) ... 239s Setting up r-cran-plyr (1.8.9-1) ... 239s Setting up r-cran-rcolorbrewer (1.1-3-1build1) ... 239s Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ... 239s Setting up r-cran-isoband (0.2.7-1) ... 239s Setting up r-cran-futile.logger (1.4.3-4build1) ... 239s Setting up r-cran-gtable (0.3.4+dfsg-1) ... 239s Setting up r-cran-later (1.3.2+dfsg-1) ... 239s Setting up r-cran-matrix (1.6-5-1) ... 239s Setting up r-cran-tinytex (0.49-1) ... 239s Setting up r-cran-knitr (1.45+dfsg-1) ... 239s Setting up r-cran-mgcv (1.9-1-1) ... 239s Setting up g++ (4:13.2.0-7ubuntu1) ... 239s update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode 239s Setting up r-cran-cachem (1.0.8-1) ... 239s 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r-cran-munsell (0.5.0-2build1) ... 239s Setting up r-cran-tibble (3.2.1+dfsg-2) ... 239s Setting up r-cran-survival (3.5-8-1) ... 239s Setting up r-bioc-biocio (1.12.0+dfsg-1) ... 239s Setting up r-cran-forcats (1.0.0-1) ... 239s Setting up r-cran-tidyselect (1.2.0+dfsg-1) ... 239s Setting up texlive-bibtex-extra (2023.20240207-1) ... 239s Setting up r-cran-reshape2 (1.4.4-2build1) ... 239s Setting up r-cran-interp (1.1-6-1) ... 239s Setting up r-bioc-genomeinfodb (1.38.6+dfsg-1) ... 239s Setting up r-cran-httr (1.4.7+dfsg-1) ... 239s Setting up r-cran-gridextra (2.3-3build1) ... 239s Setting up r-cran-hms (1.1.3-1) ... 239s Setting up r-cran-scales (1.3.0-1) ... 239s Setting up r-cran-memoise (2.0.1-1) ... 239s Setting up r-cran-promises (1.2.1+dfsg-1) ... 239s Setting up r-cran-purrr (1.0.2-1) ... 239s Setting up r-cran-blob (1.2.4-1) ... 239s Setting up r-cran-htmltools (0.5.7-1) ... 239s Setting up pkg-r-autopkgtest (20231212ubuntu1) ... 239s Setting up r-bioc-xvector (0.42.0-1) ... 239s Setting up r-cran-pkgbuild (1.4.3-1) ... 239s Setting up r-cran-sass (0.4.8+dfsg-1) ... 239s Setting up r-cran-dplyr (1.1.4-1) ... 239s Setting up r-cran-rsqlite (2.3.4-1) ... 239s Setting up r-cran-progress (1.2.3-1) ... 239s Setting up r-cran-pkgload (1.3.4-1) ... 239s Setting up r-cran-vroom (1.6.5-1) ... 239s Setting up r-bioc-sparsearray (1.2.4+dfsg-1) ... 239s Setting up r-cran-ggplot2 (3.4.4+dfsg-1) ... 239s Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ... 239s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 239s Setting up r-cran-rematch2 (2.1.2-2build1) ... 239s Setting up r-cran-rpart (4.1.23-1) ... 239s Setting up r-bioc-biostrings (2.70.2+dfsg-1) ... 239s Setting up r-bioc-annotationfilter (1.26.0+dfsg-1) ... 239s Setting up r-cran-fontawesome (0.5.2-1) ... 239s Setting up r-cran-latticeextra (0.6-30-1) ... 239s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 239s Setting up r-cran-viridis (0.6.5-1) ... 239s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 239s Setting up r-cran-readr (2.1.5-1) ... 239s Setting up r-cran-waldo (0.5.2-1build1) ... 239s Setting up r-cran-tidyr (1.3.1-1) ... 239s Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ... 239s Setting up r-cran-dbplyr (2.4.0+dfsg-1) ... 239s Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ... 239s Setting up r-cran-patchwork (1.2.0-1) ... 239s Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ... 239s Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ... 239s Setting up r-bioc-keggrest (1.42.0+dfsg-1) ... 239s Setting up r-cran-haven (2.5.4-1) ... 239s Setting up r-bioc-annotationdbi (1.64.1-1) ... 239s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 239s Setting up r-cran-testthat (3.2.1-1) ... 239s Setting up r-cran-broom (1.0.5+dfsg-1) ... 239s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 239s Setting up r-bioc-biomart (2.58.2+dfsg-1) ... 239s Setting up r-cran-labelled (2.12.0-2) ... 239s Setting up r-bioc-genomicalignments (1.38.2-1) ... 239s Setting up r-cran-bookdown (0.37+dfsg-1) ... 239s Setting up r-bioc-rtracklayer (1.62.0-1) ... 239s Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ... 239s Setting up r-cran-htmlwidgets (1.6.4+dfsg-1) ... 239s Setting up r-cran-broom.helpers (1.14.0-2) ... 239s Setting up r-bioc-bsgenome (1.70.2-1) ... 239s Setting up r-bioc-biocstyle (2.30.0+dfsg-1) ... 239s Setting up r-bioc-ensembldb (2.26.0+dfsg-1) ... 239s Setting up r-bioc-organismdbi (1.44.0+dfsg-1) ... 239s Setting up r-cran-ggstats (0.5.1-2) ... 239s Setting up r-bioc-variantannotation (1.48.1-1) ... 239s Setting up r-cran-ggally (2.2.1-1) ... 239s Setting up r-cran-htmltable (2.4.2-1) ... 239s Setting up r-cran-hmisc (5.1-1-1) ... 239s Setting up r-bioc-biovizbase (1.50.0-1) ... 239s Setting up r-bioc-ggbio (1.50.0-1) ... 239s Setting up autopkgtest-satdep (0) ... 239s Processing triggers for man-db (2.12.0-3) ... 240s Processing triggers for install-info (7.1-3) ... 240s Processing triggers for libc-bin (2.39-0ubuntu2) ... 240s Processing triggers for tex-common (6.18) ... 241s Running updmap-sys. This may take some time... done. 241s Running mktexlsr /var/lib/texmf ... done. 241s Building format(s) --all. 280s This may take some time... done. 295s (Reading database ... 130234 files and directories currently installed.) 295s Removing autopkgtest-satdep (0) ... 296s autopkgtest [13:48:25]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 296s autopkgtest [13:48:25]: test pkg-r-autopkgtest: [----------------------- 296s Test: Try to load the R library ggbio 297s 297s R version 4.3.2 (2023-10-31) -- "Eye Holes" 297s Copyright (C) 2023 The R Foundation for Statistical Computing 297s Platform: aarch64-unknown-linux-gnu (64-bit) 297s 297s R is free software and comes with ABSOLUTELY NO WARRANTY. 297s You are welcome to redistribute it under certain conditions. 297s Type 'license()' or 'licence()' for distribution details. 297s 297s R is a collaborative project with many contributors. 297s Type 'contributors()' for more information and 297s 'citation()' on how to cite R or R packages in publications. 297s 297s Type 'demo()' for some demos, 'help()' for on-line help, or 297s 'help.start()' for an HTML browser interface to help. 297s Type 'q()' to quit R. 297s 297s > library('ggbio') 297s Loading required package: BiocGenerics 297s 297s Attaching package: ‘BiocGenerics’ 297s 297s The following objects are masked from ‘package:stats’: 297s 297s IQR, mad, sd, var, xtabs 297s 297s The following objects are masked from ‘package:base’: 297s 297s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 297s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 297s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 297s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 297s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 297s table, tapply, union, unique, unsplit, which.max, which.min 297s 297s Loading required package: ggplot2 298s Registered S3 method overwritten by 'GGally': 298s method from 298s +.gg ggplot2 314s > 314s > 314s Need specific help about ggbio? try mailing 314s the maintainer or visit https://lawremi.github.io/ggbio/ 314s 314s Attaching package: 'ggbio' 314s 314s The following objects are masked from 'package:ggplot2': 314s 314s geom_bar, geom_rect, geom_segment, ggsave, stat_bin, stat_identity, 314s xlim 314s 314s Other tests are currently unsupported! 314s They will be progressively added. 315s autopkgtest [13:48:44]: test pkg-r-autopkgtest: -----------------------] 315s pkg-r-autopkgtest PASS 315s autopkgtest [13:48:44]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 315s autopkgtest [13:48:44]: @@@@@@@@@@@@@@@@@@@@ summary 315s pkg-r-autopkgtest PASS 334s Creating nova instance adt-noble-arm64-r-bioc-ggbio-20240316-134329-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...