0s autopkgtest [17:31:43]: starting date and time: 2024-03-16 17:31:43+0000 0s autopkgtest [17:31:43]: git checkout: b506e79c ssh-setup/nova: fix ARCH having two lines of data 0s autopkgtest [17:31:43]: host juju-7f2275-prod-proposed-migration-environment-3; command line: /home/ubuntu/autopkgtest/runner/autopkgtest --output-dir /tmp/autopkgtest-work.kb13lrw0/out --timeout-copy=6000 --setup-commands /home/ubuntu/autopkgtest-cloud/worker-config-production/setup-canonical.sh --setup-commands /home/ubuntu/autopkgtest/setup-commands/setup-testbed --apt-pocket=proposed=src:r-base,src:curl,src:glib2.0,src:libpng1.6,src:libpsl,src:libtirpc,src:libxt,src:openssl,src:orthanc-python,src:readline,src:wp2latex --apt-upgrade r-bioc-geoquery --timeout-short=300 --timeout-copy=20000 --timeout-build=20000 '--env=ADT_TEST_TRIGGERS=r-base/4.3.3-2build1 curl/8.5.0-2ubuntu7 glib2.0/2.79.3-3ubuntu5 libpng1.6/1.6.43-3 libpsl/0.21.2-1.1 libtirpc/1.3.4+ds-1.1 libxt/1:1.2.1-1.2 openssl/3.0.13-0ubuntu1 orthanc-python/4.1+ds-2build3 readline/8.2-3.1 wp2latex/4.4~ds-1build1' -- ssh -s /home/ubuntu/autopkgtest/ssh-setup/nova -- --flavor autopkgtest --security-groups autopkgtest-juju-7f2275-prod-proposed-migration-environment-3@bos03-arm64-25.secgroup --name adt-noble-arm64-r-bioc-geoquery-20240316-173143-juju-7f2275-prod-proposed-migration-environment-3 --image adt/ubuntu-noble-arm64-server --keyname testbed-juju-7f2275-prod-proposed-migration-environment-3 --net-id=net_prod-proposed-migration -e TERM=linux -e ''"'"'http_proxy=http://squid.internal:3128'"'"'' -e ''"'"'https_proxy=http://squid.internal:3128'"'"'' -e ''"'"'no_proxy=127.0.0.1,127.0.1.1,login.ubuntu.com,localhost,localdomain,novalocal,internal,archive.ubuntu.com,ports.ubuntu.com,security.ubuntu.com,ddebs.ubuntu.com,changelogs.ubuntu.com,launchpadlibrarian.net,launchpadcontent.net,launchpad.net,10.24.0.0/24,keystone.ps5.canonical.com,objectstorage.prodstack5.canonical.com'"'"'' --mirror=http://ftpmaster.internal/ubuntu/ 110s autopkgtest [17:33:33]: testbed dpkg architecture: arm64 110s autopkgtest [17:33:33]: testbed apt version: 2.7.12 110s autopkgtest [17:33:33]: @@@@@@@@@@@@@@@@@@@@ test bed setup 111s Get:1 http://ftpmaster.internal/ubuntu noble-proposed InRelease [117 kB] 111s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/restricted Sources [6540 B] 111s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/multiverse Sources [51.4 kB] 111s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/universe Sources [3670 kB] 111s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main Sources [473 kB] 112s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 Packages [646 kB] 112s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 c-n-f Metadata [3144 B] 112s Get:8 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 Packages [33.6 kB] 112s Get:9 http://ftpmaster.internal/ubuntu noble-proposed/restricted arm64 c-n-f Metadata [116 B] 112s Get:10 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 Packages [3995 kB] 112s Get:11 http://ftpmaster.internal/ubuntu noble-proposed/universe arm64 c-n-f Metadata [8528 B] 112s Get:12 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 Packages [55.6 kB] 112s Get:13 http://ftpmaster.internal/ubuntu noble-proposed/multiverse arm64 c-n-f Metadata [116 B] 113s Fetched 9060 kB in 2s (5339 kB/s) 114s Reading package lists... 116s Reading package lists... 117s Building dependency tree... 117s Reading state information... 117s Calculating upgrade... 118s The following packages will be REMOVED: 118s libglib2.0-0 libssl3 118s The following NEW packages will be installed: 118s libglib2.0-0t64 libssl3t64 xdg-user-dirs 118s The following packages have been kept back: 118s curl 118s The following packages will be upgraded: 118s gir1.2-glib-2.0 libglib2.0-data libtirpc-common openssl readline-common 118s ubuntu-minimal ubuntu-standard 118s 7 upgraded, 3 newly installed, 2 to remove and 1 not upgraded. 118s Need to get 4613 kB of archives. 118s After this operation, 211 kB of additional disk space will be used. 118s Get:1 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 gir1.2-glib-2.0 arm64 2.79.3-3ubuntu5 [182 kB] 118s Get:2 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-0t64 arm64 2.79.3-3ubuntu5 [1527 kB] 118s Get:3 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 openssl arm64 3.0.13-0ubuntu1 [983 kB] 118s Get:4 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libssl3t64 arm64 3.0.13-0ubuntu1 [1770 kB] 118s Get:5 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libglib2.0-data all 2.79.3-3ubuntu5 [46.6 kB] 118s Get:6 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 libtirpc-common all 1.3.4+ds-1.1 [8018 B] 118s Get:7 http://ftpmaster.internal/ubuntu noble-proposed/main arm64 readline-common all 8.2-3.1 [56.4 kB] 118s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-minimal arm64 1.536 [10.7 kB] 118s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-user-dirs arm64 0.18-1 [18.1 kB] 118s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 ubuntu-standard arm64 1.536 [10.7 kB] 120s Fetched 4613 kB in 1s (6666 kB/s) 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 121s Preparing to unpack .../gir1.2-glib-2.0_2.79.3-3ubuntu5_arm64.deb ... 121s Unpacking gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 121s dpkg: libglib2.0-0:arm64: dependency problems, but removing anyway as you requested: 121s udisks2 depends on libglib2.0-0 (>= 2.77.0). 121s shared-mime-info depends on libglib2.0-0 (>= 2.75.3). 121s python3-gi depends on libglib2.0-0 (>= 2.77.0). 121s python3-dbus depends on libglib2.0-0 (>= 2.16.0). 121s netplan.io depends on libglib2.0-0 (>= 2.70.0). 121s netplan-generator depends on libglib2.0-0 (>= 2.70.0). 121s libxmlb2:arm64 depends on libglib2.0-0 (>= 2.54.0). 121s libvolume-key1:arm64 depends on libglib2.0-0 (>= 2.18.0). 121s libudisks2-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libqrtr-glib0:arm64 depends on libglib2.0-0 (>= 2.56). 121s libqmi-proxy depends on libglib2.0-0 (>= 2.30.0). 121s libqmi-glib5:arm64 depends on libglib2.0-0 (>= 2.54.0). 121s libpolkit-gobject-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 121s libpolkit-agent-1-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 121s libnetplan0:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libmm-glib0:arm64 depends on libglib2.0-0 (>= 2.62.0). 121s libmbim-proxy depends on libglib2.0-0 (>= 2.56). 121s libmbim-glib4:arm64 depends on libglib2.0-0 (>= 2.56). 121s libjson-glib-1.0-0:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libjcat1:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libgusb2:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libgudev-1.0-0:arm64 depends on libglib2.0-0 (>= 2.38.0). 121s libgirepository-1.0-1:arm64 depends on libglib2.0-0 (>= 2.79.0). 121s libfwupd2:arm64 depends on libglib2.0-0 (>= 2.79.0). 121s libblockdev3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-utils3:arm64 depends on libglib2.0-0 (>= 2.75.3). 121s libblockdev-swap3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-part3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-nvme3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-mdraid3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-loop3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-fs3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s libblockdev-crypto3:arm64 depends on libglib2.0-0 (>= 2.42.2). 121s fwupd depends on libglib2.0-0 (>= 2.79.0). 121s bolt depends on libglib2.0-0 (>= 2.56.0). 121s 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 121s Removing libglib2.0-0:arm64 (2.79.2-1~ubuntu1) ... 121s Selecting previously unselected package libglib2.0-0t64:arm64. 121s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74733 files and directories currently installed.) 121s Preparing to unpack .../libglib2.0-0t64_2.79.3-3ubuntu5_arm64.deb ... 121s libglib2.0-0t64.preinst: Removing /var/lib/dpkg/info/libglib2.0-0:arm64.postrm to avoid loss of /usr/share/glib-2.0/schemas/gschemas.compiled... 121s removed '/var/lib/dpkg/info/libglib2.0-0:arm64.postrm' 121s Unpacking libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 121s Preparing to unpack .../openssl_3.0.13-0ubuntu1_arm64.deb ... 121s Unpacking openssl (3.0.13-0ubuntu1) over (3.0.10-1ubuntu4) ... 122s dpkg: libssl3:arm64: dependency problems, but removing anyway as you requested: 122s wget depends on libssl3 (>= 3.0.0). 122s u-boot-tools depends on libssl3 (>= 3.0.0). 122s tnftp depends on libssl3 (>= 3.0.0). 122s tcpdump depends on libssl3 (>= 3.0.0). 122s systemd-resolved depends on libssl3 (>= 3.0.0). 122s systemd depends on libssl3 (>= 3.0.0). 122s sudo depends on libssl3 (>= 3.0.0). 122s sbsigntool depends on libssl3 (>= 3.0.0). 122s rsync depends on libssl3 (>= 3.0.0). 122s python3-cryptography depends on libssl3 (>= 3.0.0). 122s openssh-server depends on libssl3 (>= 3.0.10). 122s openssh-client depends on libssl3 (>= 3.0.10). 122s mtd-utils depends on libssl3 (>= 3.0.0). 122s mokutil depends on libssl3 (>= 3.0.0). 122s linux-headers-6.8.0-11-generic depends on libssl3 (>= 3.0.0). 122s libsystemd-shared:arm64 depends on libssl3 (>= 3.0.0). 122s libssh-4:arm64 depends on libssl3 (>= 3.0.0). 122s libsasl2-modules:arm64 depends on libssl3 (>= 3.0.0). 122s libsasl2-2:arm64 depends on libssl3 (>= 3.0.0). 122s libpython3.12-minimal:arm64 depends on libssl3 (>= 3.0.0). 122s libnvme1 depends on libssl3 (>= 3.0.0). 122s libkrb5-3:arm64 depends on libssl3 (>= 3.0.0). 122s libkmod2:arm64 depends on libssl3 (>= 3.0.0). 122s libfido2-1:arm64 depends on libssl3 (>= 3.0.0). 122s libcurl4:arm64 depends on libssl3 (>= 3.0.0). 122s libcryptsetup12:arm64 depends on libssl3 (>= 3.0.0). 122s kmod depends on libssl3 (>= 3.0.0). 122s dhcpcd-base depends on libssl3 (>= 3.0.0). 122s bind9-libs:arm64 depends on libssl3 (>= 3.0.0). 122s 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74758 files and directories currently installed.) 122s Removing libssl3:arm64 (3.0.10-1ubuntu4) ... 122s Selecting previously unselected package libssl3t64:arm64. 122s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74747 files and directories currently installed.) 122s Preparing to unpack .../0-libssl3t64_3.0.13-0ubuntu1_arm64.deb ... 122s Unpacking libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Preparing to unpack .../1-libglib2.0-data_2.79.3-3ubuntu5_all.deb ... 122s Unpacking libglib2.0-data (2.79.3-3ubuntu5) over (2.79.2-1~ubuntu1) ... 122s Preparing to unpack .../2-libtirpc-common_1.3.4+ds-1.1_all.deb ... 122s Unpacking libtirpc-common (1.3.4+ds-1.1) over (1.3.4+ds-1build1) ... 122s Preparing to unpack .../3-readline-common_8.2-3.1_all.deb ... 122s Unpacking readline-common (8.2-3.1) over (8.2-3) ... 122s Preparing to unpack .../4-ubuntu-minimal_1.536_arm64.deb ... 122s Unpacking ubuntu-minimal (1.536) over (1.535) ... 122s Selecting previously unselected package xdg-user-dirs. 122s Preparing to unpack .../5-xdg-user-dirs_0.18-1_arm64.deb ... 122s Unpacking xdg-user-dirs (0.18-1) ... 122s Preparing to unpack .../6-ubuntu-standard_1.536_arm64.deb ... 122s Unpacking ubuntu-standard (1.536) over (1.535) ... 122s Setting up ubuntu-minimal (1.536) ... 122s Setting up xdg-user-dirs (0.18-1) ... 122s Setting up libssl3t64:arm64 (3.0.13-0ubuntu1) ... 122s Setting up libtirpc-common (1.3.4+ds-1.1) ... 122s Setting up ubuntu-standard (1.536) ... 122s Setting up libglib2.0-0t64:arm64 (2.79.3-3ubuntu5) ... 123s No schema files found: doing nothing. 123s Setting up libglib2.0-data (2.79.3-3ubuntu5) ... 123s Setting up gir1.2-glib-2.0:arm64 (2.79.3-3ubuntu5) ... 123s Setting up openssl (3.0.13-0ubuntu1) ... 123s Setting up readline-common (8.2-3.1) ... 123s Processing triggers for man-db (2.12.0-3) ... 123s Processing triggers for install-info (7.1-3) ... 124s Processing triggers for libc-bin (2.39-0ubuntu2) ... 124s Reading package lists... 124s Building dependency tree... 124s Reading state information... 125s 0 upgraded, 0 newly installed, 0 to remove and 1 not upgraded. 126s sh: Attempting to set up Debian/Ubuntu apt sources automatically 126s sh: Distribution appears to be Ubuntu 127s Reading package lists... 127s Building dependency tree... 127s Reading state information... 128s eatmydata is already the newest version (131-1). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 128s Building dependency tree... 128s Reading state information... 128s dbus is already the newest version (1.14.10-4ubuntu1). 128s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 128s Reading package lists... 129s Building dependency tree... 129s Reading state information... 130s rng-tools-debian is already the newest version (2.4). 130s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 130s Reading package lists... 130s Building dependency tree... 130s Reading state information... 131s The following packages will be REMOVED: 131s cloud-init* python3-configobj* python3-debconf* 131s 0 upgraded, 0 newly installed, 3 to remove and 0 not upgraded. 131s After this operation, 3252 kB disk space will be freed. 131s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74774 files and directories currently installed.) 131s Removing cloud-init (24.1.1-0ubuntu1) ... 133s Removing python3-configobj (5.0.8-3) ... 133s Removing python3-debconf (1.5.86) ... 133s Processing triggers for man-db (2.12.0-3) ... 133s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74385 files and directories currently installed.) 133s Purging configuration files for cloud-init (24.1.1-0ubuntu1) ... 135s dpkg: warning: while removing cloud-init, directory '/etc/cloud/cloud.cfg.d' not empty so not removed 135s Processing triggers for rsyslog (8.2312.0-3ubuntu3) ... 135s invoke-rc.d: policy-rc.d denied execution of try-restart. 135s Reading package lists... 135s Building dependency tree... 135s Reading state information... 136s linux-generic is already the newest version (6.8.0-11.11+1). 136s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 137s Hit:1 http://ftpmaster.internal/ubuntu noble InRelease 137s Hit:2 http://ftpmaster.internal/ubuntu noble-updates InRelease 137s Hit:3 http://ftpmaster.internal/ubuntu noble-security InRelease 140s Reading package lists... 140s Reading package lists... 140s Building dependency tree... 140s Reading state information... 140s Calculating upgrade... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 141s Reading package lists... 141s Building dependency tree... 141s Reading state information... 141s 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. 142s autopkgtest [17:34:05]: rebooting testbed after setup commands that affected boot 169s autopkgtest [17:34:32]: testbed running kernel: Linux 6.8.0-11-generic #11-Ubuntu SMP PREEMPT_DYNAMIC Wed Feb 14 02:53:31 UTC 2024 172s autopkgtest [17:34:35]: @@@@@@@@@@@@@@@@@@@@ apt-source r-bioc-geoquery 175s Get:1 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (dsc) [2267 B] 175s Get:2 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (tar) [13.4 MB] 175s Get:3 http://ftpmaster.internal/ubuntu noble/universe r-bioc-geoquery 2.70.0+dfsg-1 (diff) [2972 B] 176s gpgv: Signature made Thu Nov 30 07:43:50 2023 UTC 176s gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 176s gpgv: issuer "tille@debian.org" 176s gpgv: Can't check signature: No public key 176s dpkg-source: warning: cannot verify inline signature for ./r-bioc-geoquery_2.70.0+dfsg-1.dsc: no acceptable signature found 176s autopkgtest [17:34:39]: testing package r-bioc-geoquery version 2.70.0+dfsg-1 176s autopkgtest [17:34:39]: build not needed 178s autopkgtest [17:34:41]: test pkg-r-autopkgtest: preparing testbed 179s Reading package lists... 180s Building dependency tree... 180s Reading state information... 180s Starting pkgProblemResolver with broken count: 0 181s Starting 2 pkgProblemResolver with broken count: 0 181s Done 182s The following additional packages will be installed: 182s build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu 182s dctrl-tools fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono 182s fonts-font-awesome fonts-glyphicons-halflings fonts-mathjax g++ g++-13 182s g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc gcc-13 182s gcc-13-aarch64-linux-gnu gcc-aarch64-linux-gnu gfortran gfortran-13 182s gfortran-13-aarch64-linux-gnu gfortran-aarch64-linux-gnu icu-devtools 182s javascript-common libasan8 libatomic1 libblas-dev libblas3 libbz2-dev 182s libc-dev-bin libc6-dev libcairo2 libcc1-0 libcrypt-dev libdatrie1 182s libdeflate0 libfontconfig1 libgcc-13-dev libgfortran-13-dev libgfortran5 182s libgomp1 libgraphite2-3 libharfbuzz0b libhwasan0 libice6 libicu-dev libisl23 182s libitm1 libjbig0 libjpeg-dev libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 182s libjpeg8-dev libjs-bootstrap libjs-bootstrap4 libjs-d3 libjs-es5-shim 182s libjs-highlight.js libjs-jquery libjs-jquery-datatables 182s libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-mathjax 182s libjs-microplugin.js libjs-modernizr libjs-popper.js libjs-prettify 182s libjs-sifter.js libjs-twitter-bootstrap-datepicker liblapack-dev liblapack3 182s liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 libncurses-dev libnsl-dev 182s libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils 182s libpaper1 libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3 182s libpixman-1-0 libpkgconf3 libpng-dev libreadline-dev libsharpyuv0 libsm6 182s libstdc++-13-dev libtcl8.6 libthai-data libthai0 libtiff6 libtirpc-dev 182s libtk8.6 libtsan2 libubsan1 libwebp7 libxcb-render0 libxcb-shm0 libxft2 182s libxrender1 libxss1 libxt6 linux-libc-dev littler node-bootstrap-sass 182s node-html5shiv node-normalize.css pandoc pandoc-data pkg-config 182s pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core r-base-dev r-bioc-biobase 182s r-bioc-biocgenerics r-bioc-geoquery r-bioc-limma r-cran-askpass 182s r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-brio r-cran-bslib 182s r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr r-cran-commonmark 182s r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-data.table 182s r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr r-cran-ellipsis 182s r-cran-evaluate r-cran-fansi r-cran-fastmap r-cran-fontawesome r-cran-fs 182s r-cran-generics r-cran-glue r-cran-highr r-cran-hms r-cran-htmltools 182s r-cran-httpuv r-cran-httr r-cran-jquerylib r-cran-jsonlite r-cran-knitr 182s r-cran-later r-cran-lazyeval r-cran-lifecycle r-cran-littler r-cran-magrittr 182s r-cran-markdown r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar 182s r-cran-pkgbuild r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload 182s r-cran-praise r-cran-prettyunits r-cran-processx r-cran-progress 182s r-cran-promises r-cran-ps r-cran-purrr r-cran-r.methodss3 r-cran-r.oo 182s r-cran-r.utils r-cran-r6 r-cran-rappdirs r-cran-rcpp r-cran-readr 182s r-cran-rematch2 r-cran-rex r-cran-rlang r-cran-rmarkdown r-cran-rprojroot 182s r-cran-sass r-cran-shiny r-cran-sourcetools r-cran-statmod r-cran-stringi 182s r-cran-stringr r-cran-sys r-cran-testthat r-cran-tibble r-cran-tidyr 182s r-cran-tidyselect r-cran-tinytex r-cran-tzdb r-cran-utf8 r-cran-vctrs 182s r-cran-vroom r-cran-waldo r-cran-withr r-cran-xfun r-cran-xml2 r-cran-xtable 182s r-cran-yaml rpcsvc-proto unzip x11-common xdg-utils zip zlib1g-dev 182s Suggested packages: 182s cpp-doc gcc-13-locales cpp-13-doc debtags gcc-13-doc gcc-multilib 182s manpages-dev autoconf automake libtool flex bison gdb gcc-doc 182s gdb-aarch64-linux-gnu gfortran-doc gfortran-13-doc libcoarrays-dev apache2 182s | lighttpd | httpd liblapack-doc glibc-doc icu-doc libjs-jquery-ui-docs 182s fonts-mathjax-extras fonts-stix libjs-mathjax-doc liblzma-doc ncurses-doc 182s readline-doc libstdc++-13-doc tcl8.6 tk8.6 nodejs texlive-latex-recommended 182s texlive-xetex texlive-luatex pandoc-citeproc texlive-latex-extra context 182s wkhtmltopdf librsvg2-bin groff ghc php python ruby libjs-katex 182s citation-style-language-styles elpa-ess r-doc-info | r-doc-pdf r-mathlib 182s r-base-html texlive-base texlive-latex-base texlive-plain-generic 182s texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils texinfo 182s r-bioc-all r-cran-runit r-bioc-biocstyle r-bioc-s4vectors r-bioc-iranges 182s r-bioc-genomicranges r-bioc-delayedarray r-bioc-biostrings r-bioc-rsamtools 182s r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate 182s r-cran-biasedurn r-cran-ellipse r-cran-gplots r-cran-locfit r-cran-mass 182s r-bioc-go.db r-bioc-org.hs.eg.db r-cran-roxygen2 r-cran-ff r-cran-spelling 182s r-cran-rstudioapi r-cran-lubridate r-cran-getopt r-cran-dbi 182s r-cran-formattable r-cran-ggplot2 r-cran-nanotime r-cran-palmerpenguins 182s r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-codetools 182s r-cran-inline r-cran-hmisc r-cran-rvest r-cran-bench r-cran-blob r-cran-here 182s r-cran-plm r-cran-zoo 182s Recommended packages: 182s bzip2-doc manpages manpages-dev libc-devtools node-jquery libpng-tools 182s r-recommended r-doc-html r-cran-ggplot2 r-cran-thematic r-cran-cliapp 182s r-cran-mockery r-cran-htmlwidgets r-cran-rstudioapi r-cran-whoami r-cran-dt 182s r-cran-bench r-cran-decor r-cran-lobstr r-cran-scales r-cran-spelling 182s r-cran-webutils r-cran-xts r-cran-nanotime r-cran-zoo r-cran-gh r-cran-broom 182s r-cran-dbi r-cran-dbplyr r-cran-rmysql r-cran-rpostgresql r-cran-rsqlite 182s r-cran-lattice r-cran-unitizer r-cran-rsvg r-cran-testit r-cran-cairo 182s r-cran-ragg r-cran-jpeg r-cran-png r-cran-r.rsp r-cran-sf r-cran-codetools 182s r-cran-formatr r-cran-gridsvg r-cran-magick r-cran-reticulate r-cran-rgl 182s r-cran-tikzdevice r-cran-webshot r-cran-svglite node-highlight.js 182s r-cran-lintr r-cran-tidyverse r-cran-rcurl r-cran-sodium r-cran-lubridate 182s r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-remotes r-cran-webfakes 182s r-cran-future r-cran-pingr r-cran-usethis r-cran-dygraphs r-cran-rsconnect 182s r-cran-downlit r-cran-formattable r-cran-pkgdown r-cran-zeallot r-cran-renv 182s r-cran-runit libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl 182s x11-utils x11-xserver-utils 183s The following NEW packages will be installed: 183s autopkgtest-satdep build-essential cpp cpp-13 cpp-13-aarch64-linux-gnu 183s cpp-aarch64-linux-gnu dctrl-tools fontconfig fontconfig-config 183s fonts-dejavu-core fonts-dejavu-mono fonts-font-awesome 183s fonts-glyphicons-halflings fonts-mathjax g++ g++-13 g++-13-aarch64-linux-gnu 183s g++-aarch64-linux-gnu gcc gcc-13 gcc-13-aarch64-linux-gnu 183s gcc-aarch64-linux-gnu gfortran gfortran-13 gfortran-13-aarch64-linux-gnu 183s gfortran-aarch64-linux-gnu icu-devtools javascript-common libasan8 183s libatomic1 libblas-dev libblas3 libbz2-dev libc-dev-bin libc6-dev libcairo2 183s libcc1-0 libcrypt-dev libdatrie1 libdeflate0 libfontconfig1 libgcc-13-dev 183s libgfortran-13-dev libgfortran5 libgomp1 libgraphite2-3 libharfbuzz0b 183s libhwasan0 libice6 libicu-dev libisl23 libitm1 libjbig0 libjpeg-dev 183s libjpeg-turbo8 libjpeg-turbo8-dev libjpeg8 libjpeg8-dev libjs-bootstrap 183s libjs-bootstrap4 libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery 183s libjs-jquery-datatables libjs-jquery-selectize.js libjs-jquery-ui libjs-json 183s libjs-mathjax libjs-microplugin.js libjs-modernizr libjs-popper.js 183s libjs-prettify libjs-sifter.js libjs-twitter-bootstrap-datepicker 183s liblapack-dev liblapack3 liblerc4 liblsan0 liblua5.4-0 liblzma-dev libmpc3 183s libncurses-dev libnsl-dev libpango-1.0-0 libpangocairo-1.0-0 183s libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre2-16-0 libpcre2-32-0 183s libpcre2-dev libpcre2-posix3 libpixman-1-0 libpkgconf3 libpng-dev 183s libreadline-dev libsharpyuv0 libsm6 libstdc++-13-dev libtcl8.6 libthai-data 183s libthai0 libtiff6 libtirpc-dev libtk8.6 libtsan2 libubsan1 libwebp7 183s libxcb-render0 libxcb-shm0 libxft2 libxrender1 libxss1 libxt6 linux-libc-dev 183s littler node-bootstrap-sass node-html5shiv node-normalize.css pandoc 183s pandoc-data pkg-config pkg-r-autopkgtest pkgconf pkgconf-bin r-base-core 183s r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-geoquery r-bioc-limma 183s r-cran-askpass r-cran-base64enc r-cran-bit r-cran-bit64 r-cran-brio 183s r-cran-bslib r-cran-cachem r-cran-callr r-cran-cli r-cran-clipr 183s r-cran-commonmark r-cran-covr r-cran-cpp11 r-cran-crayon r-cran-curl 183s r-cran-data.table r-cran-desc r-cran-diffobj r-cran-digest r-cran-dplyr 183s r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fastmap 183s r-cran-fontawesome r-cran-fs r-cran-generics r-cran-glue r-cran-highr 183s r-cran-hms r-cran-htmltools r-cran-httpuv r-cran-httr r-cran-jquerylib 183s r-cran-jsonlite r-cran-knitr r-cran-later r-cran-lazyeval r-cran-lifecycle 183s r-cran-littler r-cran-magrittr r-cran-markdown r-cran-memoise r-cran-mime 183s r-cran-openssl r-cran-pillar r-cran-pkgbuild r-cran-pkgconfig 183s r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-prettyunits 183s r-cran-processx r-cran-progress r-cran-promises r-cran-ps r-cran-purrr 183s r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rappdirs 183s r-cran-rcpp r-cran-readr r-cran-rematch2 r-cran-rex r-cran-rlang 183s r-cran-rmarkdown r-cran-rprojroot r-cran-sass r-cran-shiny 183s r-cran-sourcetools r-cran-statmod r-cran-stringi r-cran-stringr r-cran-sys 183s r-cran-testthat r-cran-tibble r-cran-tidyr r-cran-tidyselect r-cran-tinytex 183s r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-vroom r-cran-waldo r-cran-withr 183s r-cran-xfun r-cran-xml2 r-cran-xtable r-cran-yaml rpcsvc-proto unzip 183s x11-common xdg-utils zip zlib1g-dev 183s 0 upgraded, 229 newly installed, 0 to remove and 0 not upgraded. 183s Need to get 233 MB/233 MB of archives. 183s After this operation, 818 MB of additional disk space will be used. 183s Get:1 /tmp/autopkgtest.YFXvcT/1-autopkgtest-satdep.deb autopkgtest-satdep arm64 0 [772 B] 183s Get:2 http://ftpmaster.internal/ubuntu noble/main arm64 libc-dev-bin arm64 2.39-0ubuntu2 [19.7 kB] 183s Get:3 http://ftpmaster.internal/ubuntu noble/main arm64 linux-libc-dev arm64 6.8.0-11.11 [1569 kB] 183s Get:4 http://ftpmaster.internal/ubuntu noble/main arm64 libcrypt-dev arm64 1:4.4.36-4 [136 kB] 183s Get:5 http://ftpmaster.internal/ubuntu noble/main arm64 libtirpc-dev arm64 1.3.4+ds-1build1 [232 kB] 183s Get:6 http://ftpmaster.internal/ubuntu noble/main arm64 libnsl-dev arm64 1.3.0-3 [71.9 kB] 183s Get:7 http://ftpmaster.internal/ubuntu noble/main arm64 rpcsvc-proto arm64 1.4.2-0ubuntu6 [65.4 kB] 183s Get:8 http://ftpmaster.internal/ubuntu noble/main arm64 libc6-dev arm64 2.39-0ubuntu2 [1596 kB] 183s Get:9 http://ftpmaster.internal/ubuntu noble/main arm64 libisl23 arm64 0.26-3 [713 kB] 183s Get:10 http://ftpmaster.internal/ubuntu noble/main arm64 libmpc3 arm64 1.3.1-1 [55.3 kB] 183s Get:11 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.3 MB] 184s Get:12 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-13 arm64 13.2.0-17ubuntu2 [1028 B] 184s Get:13 http://ftpmaster.internal/ubuntu noble/main arm64 cpp-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [5316 B] 184s Get:14 http://ftpmaster.internal/ubuntu noble/main arm64 cpp arm64 4:13.2.0-7ubuntu1 [22.4 kB] 184s Get:15 http://ftpmaster.internal/ubuntu noble/main arm64 libcc1-0 arm64 14-20240303-1ubuntu1 [44.7 kB] 184s Get:16 http://ftpmaster.internal/ubuntu noble/main arm64 libgomp1 arm64 14-20240303-1ubuntu1 [144 kB] 184s Get:17 http://ftpmaster.internal/ubuntu noble/main arm64 libitm1 arm64 14-20240303-1ubuntu1 [27.7 kB] 184s Get:18 http://ftpmaster.internal/ubuntu noble/main arm64 libatomic1 arm64 14-20240303-1ubuntu1 [11.4 kB] 184s Get:19 http://ftpmaster.internal/ubuntu noble/main arm64 libasan8 arm64 14-20240303-1ubuntu1 [2919 kB] 184s Get:20 http://ftpmaster.internal/ubuntu noble/main arm64 liblsan0 arm64 14-20240303-1ubuntu1 [1282 kB] 184s Get:21 http://ftpmaster.internal/ubuntu noble/main arm64 libtsan2 arm64 14-20240303-1ubuntu1 [2687 kB] 184s Get:22 http://ftpmaster.internal/ubuntu noble/main arm64 libubsan1 arm64 14-20240303-1ubuntu1 [1151 kB] 184s Get:23 http://ftpmaster.internal/ubuntu noble/main arm64 libhwasan0 arm64 14-20240303-1ubuntu1 [1597 kB] 184s Get:24 http://ftpmaster.internal/ubuntu noble/main arm64 libgcc-13-dev arm64 13.2.0-17ubuntu2 [2464 kB] 184s Get:25 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [20.1 MB] 185s Get:26 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-13 arm64 13.2.0-17ubuntu2 [467 kB] 185s Get:27 http://ftpmaster.internal/ubuntu noble/main arm64 gcc-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1198 B] 185s Get:28 http://ftpmaster.internal/ubuntu noble/main arm64 gcc arm64 4:13.2.0-7ubuntu1 [5018 B] 185s Get:29 http://ftpmaster.internal/ubuntu noble/main arm64 libstdc++-13-dev arm64 13.2.0-17ubuntu2 [2322 kB] 185s Get:30 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [11.7 MB] 185s Get:31 http://ftpmaster.internal/ubuntu noble/main arm64 g++-13 arm64 13.2.0-17ubuntu2 [14.4 kB] 185s Get:32 http://ftpmaster.internal/ubuntu noble/main arm64 g++-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [962 B] 185s Get:33 http://ftpmaster.internal/ubuntu noble/main arm64 g++ arm64 4:13.2.0-7ubuntu1 [1082 B] 185s Get:34 http://ftpmaster.internal/ubuntu noble/main arm64 build-essential arm64 12.10ubuntu1 [4932 B] 185s Get:35 http://ftpmaster.internal/ubuntu noble/main arm64 dctrl-tools arm64 2.24-3build2 [65.2 kB] 185s Get:36 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-mono all 2.37-8 [502 kB] 185s Get:37 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-dejavu-core all 2.37-8 [835 kB] 185s Get:38 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig-config arm64 2.15.0-1ubuntu1 [37.0 kB] 185s Get:39 http://ftpmaster.internal/ubuntu noble/main arm64 libfontconfig1 arm64 2.15.0-1ubuntu1 [142 kB] 185s Get:40 http://ftpmaster.internal/ubuntu noble/main arm64 fontconfig arm64 2.15.0-1ubuntu1 [190 kB] 185s Get:41 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [516 kB] 185s Get:42 http://ftpmaster.internal/ubuntu noble/universe arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [118 kB] 185s Get:43 http://ftpmaster.internal/ubuntu noble/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2208 kB] 185s Get:44 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran5 arm64 14-20240303-1ubuntu1 [444 kB] 185s Get:45 http://ftpmaster.internal/ubuntu noble/main arm64 libgfortran-13-dev arm64 13.2.0-17ubuntu2 [478 kB] 185s Get:46 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13-aarch64-linux-gnu arm64 13.2.0-17ubuntu2 [10.8 MB] 185s Get:47 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-13 arm64 13.2.0-17ubuntu2 [10.3 kB] 185s Get:48 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran-aarch64-linux-gnu arm64 4:13.2.0-7ubuntu1 [1022 B] 185s Get:49 http://ftpmaster.internal/ubuntu noble/main arm64 gfortran arm64 4:13.2.0-7ubuntu1 [1164 B] 185s Get:50 http://ftpmaster.internal/ubuntu noble/main arm64 icu-devtools arm64 74.2-1ubuntu1 [209 kB] 185s Get:51 http://ftpmaster.internal/ubuntu noble/main arm64 javascript-common all 11+nmu1 [5936 B] 185s Get:52 http://ftpmaster.internal/ubuntu noble/main arm64 libblas3 arm64 3.12.0-3 [143 kB] 185s Get:53 http://ftpmaster.internal/ubuntu noble/main arm64 libblas-dev arm64 3.12.0-3 [111 kB] 185s Get:54 http://ftpmaster.internal/ubuntu noble/main arm64 libbz2-dev arm64 1.0.8-5ubuntu1 [35.8 kB] 185s Get:55 http://ftpmaster.internal/ubuntu noble/main arm64 libpixman-1-0 arm64 0.42.2-1 [193 kB] 185s Get:56 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-render0 arm64 1.15-1 [16.1 kB] 185s Get:57 http://ftpmaster.internal/ubuntu noble/main arm64 libxcb-shm0 arm64 1.15-1 [5780 B] 185s Get:58 http://ftpmaster.internal/ubuntu noble/main arm64 libxrender1 arm64 1:0.9.10-1.1 [19.1 kB] 185s Get:59 http://ftpmaster.internal/ubuntu noble/main arm64 libcairo2 arm64 1.18.0-1 [550 kB] 185s Get:60 http://ftpmaster.internal/ubuntu noble/main arm64 libdatrie1 arm64 0.2.13-3 [21.7 kB] 185s Get:61 http://ftpmaster.internal/ubuntu noble/main arm64 libdeflate0 arm64 1.19-1 [43.4 kB] 185s Get:62 http://ftpmaster.internal/ubuntu noble/main arm64 libgraphite2-3 arm64 1.3.14-2 [81.5 kB] 185s Get:63 http://ftpmaster.internal/ubuntu noble/main arm64 libharfbuzz0b arm64 8.3.0-2 [463 kB] 185s Get:64 http://ftpmaster.internal/ubuntu noble/main arm64 x11-common all 1:7.7+23ubuntu2 [23.4 kB] 185s Get:65 http://ftpmaster.internal/ubuntu noble/main arm64 libice6 arm64 2:1.0.10-1build2 [41.7 kB] 185s Get:66 http://ftpmaster.internal/ubuntu noble/main arm64 libicu-dev arm64 74.2-1ubuntu1 [11.9 MB] 186s Get:67 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8 arm64 2.1.5-2ubuntu1 [160 kB] 186s Get:68 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-turbo8-dev arm64 2.1.5-2ubuntu1 [304 kB] 186s Get:69 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8 arm64 8c-2ubuntu11 [2148 B] 186s Get:70 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg8-dev arm64 8c-2ubuntu11 [1484 B] 186s Get:71 http://ftpmaster.internal/ubuntu noble/main arm64 libjpeg-dev arm64 8c-2ubuntu11 [1482 B] 186s Get:72 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap all 3.4.1+dfsg-3 [129 kB] 186s Get:73 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-popper.js all 1.16.1+ds-6 [54.1 kB] 186s Get:74 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [537 kB] 186s Get:75 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-d3 all 3.5.17-4 [132 kB] 186s Get:76 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-es5-shim all 4.6.7-2 [39.8 kB] 186s Get:77 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [385 kB] 186s Get:78 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [328 kB] 186s Get:79 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [146 kB] 186s Get:80 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.6 kB] 186s Get:81 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3712 B] 186s Get:82 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [51.0 kB] 186s Get:83 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [252 kB] 186s Get:84 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-json all 0~20221030+~1.0.8-1 [20.6 kB] 186s Get:85 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [39.3 kB] 186s Get:86 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack3 arm64 3.12.0-3 [2241 kB] 186s Get:87 http://ftpmaster.internal/ubuntu noble/main arm64 liblapack-dev arm64 3.12.0-3 [4293 kB] 186s Get:88 http://ftpmaster.internal/ubuntu noble/main arm64 liblerc4 arm64 4.0.0+ds-4ubuntu1 [153 kB] 186s Get:89 http://ftpmaster.internal/ubuntu noble/main arm64 liblua5.4-0 arm64 5.4.6-3 [158 kB] 186s Get:90 http://ftpmaster.internal/ubuntu noble/main arm64 libncurses-dev arm64 6.4+20240113-1ubuntu1 [385 kB] 186s Get:91 http://ftpmaster.internal/ubuntu noble/main arm64 libthai-data all 0.1.29-2 [158 kB] 186s Get:92 http://ftpmaster.internal/ubuntu noble/main arm64 libthai0 arm64 0.1.29-2 [18.1 kB] 186s Get:93 http://ftpmaster.internal/ubuntu noble/main arm64 libpango-1.0-0 arm64 1.51.0+ds-4 [226 kB] 186s Get:94 http://ftpmaster.internal/ubuntu noble/main arm64 libpangoft2-1.0-0 arm64 1.51.0+ds-4 [41.2 kB] 186s Get:95 http://ftpmaster.internal/ubuntu noble/main arm64 libpangocairo-1.0-0 arm64 1.51.0+ds-4 [27.6 kB] 186s Get:96 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper1 arm64 1.1.29 [13.1 kB] 186s Get:97 http://ftpmaster.internal/ubuntu noble/main arm64 libpaper-utils arm64 1.1.29 [8480 B] 186s Get:98 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-16-0 arm64 10.42-4ubuntu1 [195 kB] 186s Get:99 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-32-0 arm64 10.42-4ubuntu1 [183 kB] 186s Get:100 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-posix3 arm64 10.42-4ubuntu1 [6654 B] 186s Get:101 http://ftpmaster.internal/ubuntu noble/main arm64 libpcre2-dev arm64 10.42-4ubuntu1 [679 kB] 186s Get:102 http://ftpmaster.internal/ubuntu noble/main arm64 libpkgconf3 arm64 1.8.1-2 [31.2 kB] 186s Get:103 http://ftpmaster.internal/ubuntu noble/main arm64 zlib1g-dev arm64 1:1.3.dfsg-3ubuntu1 [895 kB] 187s Get:104 http://ftpmaster.internal/ubuntu noble/main arm64 libpng-dev arm64 1.6.43-1 [266 kB] 187s Get:105 http://ftpmaster.internal/ubuntu noble/main arm64 libreadline-dev arm64 8.2-3 [177 kB] 187s Get:106 http://ftpmaster.internal/ubuntu noble/main arm64 libsharpyuv0 arm64 1.3.2-0.4 [14.4 kB] 187s Get:107 http://ftpmaster.internal/ubuntu noble/main arm64 libsm6 arm64 2:1.2.3-1build2 [16.1 kB] 187s Get:108 http://ftpmaster.internal/ubuntu noble/main arm64 libtcl8.6 arm64 8.6.13+dfsg-2 [980 kB] 187s Get:109 http://ftpmaster.internal/ubuntu noble/main arm64 libjbig0 arm64 2.1-6.1ubuntu1 [28.9 kB] 187s Get:110 http://ftpmaster.internal/ubuntu noble/main arm64 libwebp7 arm64 1.3.2-0.4 [191 kB] 187s Get:111 http://ftpmaster.internal/ubuntu noble/main arm64 libtiff6 arm64 4.5.1+git230720-3ubuntu1 [226 kB] 187s Get:112 http://ftpmaster.internal/ubuntu noble/main arm64 libxft2 arm64 2.3.6-1 [43.3 kB] 187s Get:113 http://ftpmaster.internal/ubuntu noble/main arm64 libxss1 arm64 1:1.2.3-1build2 [8252 B] 187s Get:114 http://ftpmaster.internal/ubuntu noble/main arm64 libtk8.6 arm64 8.6.13-2 [760 kB] 187s Get:115 http://ftpmaster.internal/ubuntu noble/main arm64 libxt6 arm64 1:1.2.1-1.1 [167 kB] 187s Get:116 http://ftpmaster.internal/ubuntu noble/main arm64 zip arm64 3.0-13 [172 kB] 187s Get:117 http://ftpmaster.internal/ubuntu noble/main arm64 unzip arm64 6.0-28ubuntu3 [171 kB] 187s Get:118 http://ftpmaster.internal/ubuntu noble/main arm64 xdg-utils all 1.1.3-4.1ubuntu3 [62.0 kB] 187s Get:119 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-core arm64 4.3.2-1build1 [26.8 MB] 188s Get:120 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-littler arm64 0.3.19-1 [93.4 kB] 188s Get:121 http://ftpmaster.internal/ubuntu noble/universe arm64 littler all 0.3.19-1 [2472 B] 188s Get:122 http://ftpmaster.internal/ubuntu noble/universe arm64 node-bootstrap-sass all 3.4.3-2 [187 kB] 188s Get:123 http://ftpmaster.internal/ubuntu noble/universe arm64 node-html5shiv all 3.7.3+dfsg-5 [13.5 kB] 188s Get:124 http://ftpmaster.internal/ubuntu noble/universe arm64 node-normalize.css all 8.0.1-5 [10.8 kB] 188s Get:125 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc-data all 3.1.3-1 [92.4 kB] 188s Get:126 http://ftpmaster.internal/ubuntu noble/universe arm64 pandoc arm64 3.1.3+ds-2 [27.7 MB] 188s Get:127 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf-bin arm64 1.8.1-2 [20.4 kB] 188s Get:128 http://ftpmaster.internal/ubuntu noble/main arm64 pkgconf arm64 1.8.1-2 [16.7 kB] 188s Get:129 http://ftpmaster.internal/ubuntu noble/main arm64 pkg-config arm64 1.8.1-2 [7170 B] 188s Get:130 http://ftpmaster.internal/ubuntu noble/main arm64 liblzma-dev arm64 5.4.5-0.3 [209 kB] 188s Get:131 http://ftpmaster.internal/ubuntu noble/universe arm64 r-base-dev all 4.3.2-1build1 [4336 B] 188s Get:132 http://ftpmaster.internal/ubuntu noble/universe arm64 pkg-r-autopkgtest all 20231212ubuntu1 [6448 B] 188s Get:133 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biocgenerics all 0.48.1-2 [595 kB] 188s Get:134 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-biobase arm64 2.62.0-1 [2136 kB] 188s Get:135 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cli arm64 3.6.2-1 [1377 kB] 188s Get:136 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-clipr all 0.8.0-1 [53.5 kB] 188s Get:137 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-crayon all 1.5.2-1 [164 kB] 188s Get:138 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-glue arm64 1.7.0-1 [154 kB] 188s Get:139 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rlang arm64 1.1.3-1 [1663 kB] 188s Get:140 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] 188s Get:141 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgconfig all 2.0.3-2build1 [19.7 kB] 188s Get:142 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vctrs arm64 0.6.5-1 [1327 kB] 188s Get:143 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-hms all 1.1.3-1 [96.5 kB] 188s Get:144 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r6 all 2.5.1-1 [99.0 kB] 188s Get:145 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fansi arm64 1.0.5-1 [616 kB] 188s Get:146 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-magrittr arm64 2.0.3-1 [154 kB] 188s Get:147 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-utf8 arm64 1.2.4-1 [140 kB] 189s Get:148 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pillar all 1.9.0+dfsg-1 [464 kB] 189s Get:149 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tibble arm64 3.2.1+dfsg-2 [415 kB] 189s Get:150 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit arm64 4.0.5-1 [1057 kB] 189s Get:151 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bit64 arm64 4.0.5-1 [467 kB] 189s Get:152 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-withr all 2.5.0-1 [225 kB] 189s Get:153 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyselect arm64 1.2.0+dfsg-1 [218 kB] 189s Get:154 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cpp11 all 0.4.7-1 [266 kB] 189s Get:155 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tzdb arm64 0.4.0-2 [512 kB] 189s Get:156 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-prettyunits all 1.2.0-1 [162 kB] 189s Get:157 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-progress all 1.2.3-1 [91.9 kB] 189s Get:158 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-vroom arm64 1.6.5-1 [832 kB] 189s Get:159 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgkitten all 0.2.3-1 [25.1 kB] 189s Get:160 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rcpp arm64 1.0.12-1 [1971 kB] 189s Get:161 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-readr arm64 2.1.5-1 [756 kB] 189s Get:162 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xml2 arm64 1.3.6-1 [321 kB] 189s Get:163 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-generics all 0.1.3-1 [81.3 kB] 189s Get:164 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-dplyr arm64 1.1.4-1 [1513 kB] 189s Get:165 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-data.table arm64 1.14.10+dfsg-1 [1844 kB] 189s Get:166 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-purrr arm64 1.0.2-1 [501 kB] 189s Get:167 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringi arm64 1.8.3-1 [869 kB] 189s Get:168 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-stringr all 1.5.1-1 [290 kB] 189s Get:169 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tidyr arm64 1.3.1-1 [1154 kB] 189s Get:170 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-statmod arm64 1.5.0-1 [294 kB] 189s Get:171 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-limma arm64 3.58.1+dfsg-1 [1897 kB] 189s Get:172 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-curl arm64 5.2.0+dfsg-1 [189 kB] 189s Get:173 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.methodss3 all 1.8.2-1 [84.0 kB] 189s Get:174 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.oo all 1.26.0-1 [955 kB] 189s Get:175 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-r.utils all 2.12.3-1 [1386 kB] 189s Get:176 http://ftpmaster.internal/ubuntu noble/universe arm64 r-bioc-geoquery all 2.70.0+dfsg-1 [13.7 MB] 189s Get:177 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sys arm64 3.4.2-1 [44.3 kB] 189s Get:178 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-askpass arm64 1.2.0-1 [24.4 kB] 189s Get:179 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-base64enc arm64 0.1-3-3 [27.4 kB] 189s Get:180 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-brio arm64 1.1.4-1 [37.7 kB] 189s Get:181 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fastmap arm64 1.1.1-1 [69.6 kB] 189s Get:182 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-cachem arm64 1.0.8-1 [72.3 kB] 189s Get:183 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-digest arm64 0.6.34-1 [182 kB] 189s Get:184 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ellipsis arm64 0.3.2-2 [35.5 kB] 189s Get:185 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-htmltools arm64 0.5.7-1 [369 kB] 189s Get:186 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.5 kB] 189s Get:187 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-jsonlite arm64 1.8.8+dfsg-1 [441 kB] 189s Get:188 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-memoise all 2.0.1-1 [53.9 kB] 189s Get:189 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-mime arm64 0.12-1 [35.8 kB] 189s Get:190 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fs arm64 1.6.3+dfsg-1 [227 kB] 189s Get:191 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rappdirs arm64 0.3.3-1 [47.5 kB] 189s Get:192 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sass arm64 0.4.8+dfsg-1 [952 kB] 190s Get:193 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-bslib all 0.6.1+dfsg-1 [5138 kB] 190s Get:194 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-ps arm64 1.7.6-1 [313 kB] 190s Get:195 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-processx arm64 3.8.3-1 [345 kB] 190s Get:196 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-callr all 3.7.3-2 [425 kB] 190s Get:197 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-commonmark arm64 1.9.1-1 [127 kB] 190s Get:198 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-lazyeval arm64 0.2.2-1build1 [143 kB] 190s Get:199 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rex all 1.2.1-1 [129 kB] 190s Get:200 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-openssl arm64 2.1.1+dfsg-2 [402 kB] 190s Get:201 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] 190s Get:202 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-yaml arm64 2.3.8-1 [107 kB] 190s Get:203 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-covr arm64 3.6.4+dfsg-1 [302 kB] 190s Get:204 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-desc all 1.4.3-1 [359 kB] 191s Get:205 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-diffobj arm64 0.3.5-1 [1116 kB] 191s Get:206 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-evaluate all 0.23-1 [90.2 kB] 191s Get:207 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-fontawesome all 0.5.2-1 [1300 kB] 191s Get:208 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xfun arm64 0.41+dfsg-1 [415 kB] 191s Get:209 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-highr all 0.10+dfsg-1 [38.3 kB] 191s Get:210 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-later arm64 1.3.2+dfsg-1 [120 kB] 191s Get:211 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-promises arm64 1.2.1+dfsg-1 [282 kB] 191s Get:212 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-httpuv arm64 1.6.14+dfsg-1 [496 kB] 191s Get:213 http://ftpmaster.internal/ubuntu noble/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5665 kB] 192s Get:214 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-knitr all 1.45+dfsg-1 [917 kB] 192s Get:215 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-markdown all 1.12+dfsg-1 [179 kB] 192s Get:216 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgbuild all 1.4.3-1 [209 kB] 192s Get:217 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rprojroot all 2.0.4-1 [124 kB] 192s Get:218 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-pkgload all 1.3.4-1 [207 kB] 192s Get:219 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-praise all 1.0.0-4build1 [20.3 kB] 192s Get:220 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rematch2 all 2.1.2-2build1 [46.5 kB] 192s Get:221 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-tinytex all 0.49-1 [141 kB] 192s Get:222 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-modernizr all 2.6.2+ds1-5 [48.3 kB] 192s Get:223 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] 192s Get:224 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-sourcetools arm64 0.1.7-1-1 [47.2 kB] 192s Get:225 http://ftpmaster.internal/ubuntu noble/universe arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [28.5 kB] 192s Get:226 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-shiny all 1.8.0+dfsg-1 [2762 kB] 192s Get:227 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-rmarkdown all 2.25+dfsg-3 [1481 kB] 192s Get:228 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-waldo all 0.5.2-1build1 [120 kB] 192s Get:229 http://ftpmaster.internal/ubuntu noble/universe arm64 r-cran-testthat arm64 3.2.1-1 [1678 kB] 194s Preconfiguring packages ... 194s Fetched 233 MB in 10s (24.3 MB/s) 194s Selecting previously unselected package libc-dev-bin. 195s (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 74330 files and directories currently installed.) 195s Preparing to unpack .../000-libc-dev-bin_2.39-0ubuntu2_arm64.deb ... 195s Unpacking libc-dev-bin (2.39-0ubuntu2) ... 195s Selecting previously unselected package linux-libc-dev:arm64. 195s Preparing to unpack .../001-linux-libc-dev_6.8.0-11.11_arm64.deb ... 195s Unpacking linux-libc-dev:arm64 (6.8.0-11.11) ... 195s Selecting previously unselected package libcrypt-dev:arm64. 196s Preparing to unpack .../002-libcrypt-dev_1%3a4.4.36-4_arm64.deb ... 196s Unpacking libcrypt-dev:arm64 (1:4.4.36-4) ... 196s Selecting previously unselected package libtirpc-dev:arm64. 196s Preparing to unpack .../003-libtirpc-dev_1.3.4+ds-1build1_arm64.deb ... 196s Unpacking libtirpc-dev:arm64 (1.3.4+ds-1build1) ... 196s Selecting previously unselected package libnsl-dev:arm64. 196s Preparing to unpack .../004-libnsl-dev_1.3.0-3_arm64.deb ... 196s Unpacking libnsl-dev:arm64 (1.3.0-3) ... 196s Selecting previously unselected package rpcsvc-proto. 196s Preparing to unpack .../005-rpcsvc-proto_1.4.2-0ubuntu6_arm64.deb ... 196s Unpacking rpcsvc-proto (1.4.2-0ubuntu6) ... 196s Selecting previously unselected package libc6-dev:arm64. 196s Preparing to unpack .../006-libc6-dev_2.39-0ubuntu2_arm64.deb ... 196s Unpacking libc6-dev:arm64 (2.39-0ubuntu2) ... 197s Selecting previously unselected package libisl23:arm64. 197s Preparing to unpack .../007-libisl23_0.26-3_arm64.deb ... 197s Unpacking libisl23:arm64 (0.26-3) ... 197s Selecting previously unselected package libmpc3:arm64. 197s Preparing to unpack .../008-libmpc3_1.3.1-1_arm64.deb ... 197s Unpacking libmpc3:arm64 (1.3.1-1) ... 197s Selecting previously unselected package cpp-13-aarch64-linux-gnu. 197s Preparing to unpack .../009-cpp-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking cpp-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-13. 197s Preparing to unpack .../010-cpp-13_13.2.0-17ubuntu2_arm64.deb ... 197s Unpacking cpp-13 (13.2.0-17ubuntu2) ... 197s Selecting previously unselected package cpp-aarch64-linux-gnu. 197s Preparing to unpack .../011-cpp-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 197s Unpacking cpp-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package cpp. 198s Preparing to unpack .../012-cpp_4%3a13.2.0-7ubuntu1_arm64.deb ... 198s Unpacking cpp (4:13.2.0-7ubuntu1) ... 198s Selecting previously unselected package libcc1-0:arm64. 198s Preparing to unpack .../013-libcc1-0_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libcc1-0:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libgomp1:arm64. 198s Preparing to unpack .../014-libgomp1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libgomp1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libitm1:arm64. 198s Preparing to unpack .../015-libitm1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libitm1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libatomic1:arm64. 198s Preparing to unpack .../016-libatomic1_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libatomic1:arm64 (14-20240303-1ubuntu1) ... 198s Selecting previously unselected package libasan8:arm64. 198s Preparing to unpack .../017-libasan8_14-20240303-1ubuntu1_arm64.deb ... 198s Unpacking libasan8:arm64 (14-20240303-1ubuntu1) ... 199s Selecting previously unselected package liblsan0:arm64. 199s 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unpack .../028-g++-13-aarch64-linux-gnu_13.2.0-17ubuntu2_arm64.deb ... 200s Unpacking g++-13-aarch64-linux-gnu (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package g++-13. 201s Preparing to unpack .../029-g++-13_13.2.0-17ubuntu2_arm64.deb ... 201s Unpacking g++-13 (13.2.0-17ubuntu2) ... 201s Selecting previously unselected package g++-aarch64-linux-gnu. 201s Preparing to unpack .../030-g++-aarch64-linux-gnu_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking g++-aarch64-linux-gnu (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package g++. 201s Preparing to unpack .../031-g++_4%3a13.2.0-7ubuntu1_arm64.deb ... 201s Unpacking g++ (4:13.2.0-7ubuntu1) ... 201s Selecting previously unselected package build-essential. 201s Preparing to unpack .../032-build-essential_12.10ubuntu1_arm64.deb ... 201s Unpacking build-essential (12.10ubuntu1) ... 201s Selecting previously unselected package dctrl-tools. 201s Preparing to unpack .../033-dctrl-tools_2.24-3build2_arm64.deb 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Selecting previously unselected package fonts-font-awesome. 202s Preparing to unpack .../039-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... 202s Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... 202s Selecting previously unselected package fonts-glyphicons-halflings. 202s Preparing to unpack .../040-fonts-glyphicons-halflings_1.009~3.4.1+dfsg-3_all.deb ... 202s Unpacking fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 202s Selecting previously unselected package fonts-mathjax. 202s Preparing to unpack .../041-fonts-mathjax_2.7.9+dfsg-1_all.deb ... 202s Unpacking fonts-mathjax (2.7.9+dfsg-1) ... 202s Selecting previously unselected package libgfortran5:arm64. 202s Preparing to unpack .../042-libgfortran5_14-20240303-1ubuntu1_arm64.deb ... 202s Unpacking libgfortran5:arm64 (14-20240303-1ubuntu1) ... 202s Selecting previously unselected package libgfortran-13-dev:arm64. 202s Preparing to unpack .../043-libgfortran-13-dev_13.2.0-17ubuntu2_arm64.deb ... 202s 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libthai0:arm64 (0.1.29-2) ... 205s Selecting previously unselected package libpango-1.0-0:arm64. 205s Preparing to unpack .../091-libpango-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpango-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangoft2-1.0-0:arm64. 205s Preparing to unpack .../092-libpangoft2-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpangoft2-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpangocairo-1.0-0:arm64. 205s Preparing to unpack .../093-libpangocairo-1.0-0_1.51.0+ds-4_arm64.deb ... 205s Unpacking libpangocairo-1.0-0:arm64 (1.51.0+ds-4) ... 205s Selecting previously unselected package libpaper1:arm64. 205s Preparing to unpack .../094-libpaper1_1.1.29_arm64.deb ... 205s Unpacking libpaper1:arm64 (1.1.29) ... 205s Selecting previously unselected package libpaper-utils. 205s Preparing to unpack .../095-libpaper-utils_1.1.29_arm64.deb ... 205s Unpacking libpaper-utils (1.1.29) ... 205s Selecting previously unselected package libpcre2-16-0:arm64. 205s Preparing to unpack .../096-libpcre2-16-0_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-16-0:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-32-0:arm64. 205s Preparing to unpack .../097-libpcre2-32-0_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-32-0:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-posix3:arm64. 205s Preparing to unpack .../098-libpcre2-posix3_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-posix3:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpcre2-dev:arm64. 205s Preparing to unpack .../099-libpcre2-dev_10.42-4ubuntu1_arm64.deb ... 205s Unpacking libpcre2-dev:arm64 (10.42-4ubuntu1) ... 205s Selecting previously unselected package libpkgconf3:arm64. 205s Preparing to unpack .../100-libpkgconf3_1.8.1-2_arm64.deb ... 205s Unpacking libpkgconf3:arm64 (1.8.1-2) ... 205s Selecting previously unselected package zlib1g-dev:arm64. 205s Preparing to unpack .../101-zlib1g-dev_1%3a1.3.dfsg-3ubuntu1_arm64.deb ... 205s Unpacking zlib1g-dev:arm64 (1:1.3.dfsg-3ubuntu1) ... 205s Selecting previously unselected package libpng-dev:arm64. 205s Preparing to unpack .../102-libpng-dev_1.6.43-1_arm64.deb ... 205s Unpacking libpng-dev:arm64 (1.6.43-1) ... 205s Selecting previously unselected package libreadline-dev:arm64. 206s Preparing to unpack .../103-libreadline-dev_8.2-3_arm64.deb ... 206s Unpacking libreadline-dev:arm64 (8.2-3) ... 206s Selecting previously unselected package libsharpyuv0:arm64. 206s Preparing to unpack .../104-libsharpyuv0_1.3.2-0.4_arm64.deb ... 206s Unpacking libsharpyuv0:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libsm6:arm64. 206s Preparing to unpack .../105-libsm6_2%3a1.2.3-1build2_arm64.deb ... 206s Unpacking libsm6:arm64 (2:1.2.3-1build2) ... 206s Selecting previously unselected package libtcl8.6:arm64. 206s Preparing to unpack .../106-libtcl8.6_8.6.13+dfsg-2_arm64.deb ... 206s Unpacking libtcl8.6:arm64 (8.6.13+dfsg-2) ... 206s Selecting previously unselected package libjbig0:arm64. 206s Preparing to unpack .../107-libjbig0_2.1-6.1ubuntu1_arm64.deb ... 206s Unpacking libjbig0:arm64 (2.1-6.1ubuntu1) ... 206s Selecting previously unselected package libwebp7:arm64. 206s Preparing to unpack .../108-libwebp7_1.3.2-0.4_arm64.deb ... 206s Unpacking libwebp7:arm64 (1.3.2-0.4) ... 206s Selecting previously unselected package libtiff6:arm64. 206s Preparing to unpack .../109-libtiff6_4.5.1+git230720-3ubuntu1_arm64.deb ... 206s Unpacking libtiff6:arm64 (4.5.1+git230720-3ubuntu1) ... 206s Selecting previously unselected package libxft2:arm64. 206s Preparing to unpack .../110-libxft2_2.3.6-1_arm64.deb ... 206s Unpacking libxft2:arm64 (2.3.6-1) ... 206s Selecting previously unselected package libxss1:arm64. 206s Preparing to unpack .../111-libxss1_1%3a1.2.3-1build2_arm64.deb ... 206s Unpacking libxss1:arm64 (1:1.2.3-1build2) ... 206s Selecting previously unselected package libtk8.6:arm64. 206s Preparing to unpack .../112-libtk8.6_8.6.13-2_arm64.deb ... 206s Unpacking libtk8.6:arm64 (8.6.13-2) ... 206s Selecting previously unselected package libxt6:arm64. 206s Preparing to unpack .../113-libxt6_1%3a1.2.1-1.1_arm64.deb ... 206s Unpacking libxt6:arm64 (1:1.2.1-1.1) ... 206s Selecting previously unselected package zip. 206s Preparing to unpack .../114-zip_3.0-13_arm64.deb ... 206s Unpacking zip (3.0-13) ... 206s Selecting previously unselected package unzip. 206s Preparing to unpack .../115-unzip_6.0-28ubuntu3_arm64.deb ... 206s Unpacking unzip (6.0-28ubuntu3) ... 206s Selecting previously unselected package xdg-utils. 206s Preparing to unpack .../116-xdg-utils_1.1.3-4.1ubuntu3_all.deb ... 206s Unpacking xdg-utils (1.1.3-4.1ubuntu3) ... 206s Selecting previously unselected package r-base-core. 206s Preparing to unpack .../117-r-base-core_4.3.2-1build1_arm64.deb ... 206s Unpacking r-base-core (4.3.2-1build1) ... 206s Selecting previously unselected package r-cran-littler. 206s Preparing to unpack .../118-r-cran-littler_0.3.19-1_arm64.deb ... 206s Unpacking r-cran-littler (0.3.19-1) ... 207s Selecting previously unselected package littler. 207s Preparing to unpack .../119-littler_0.3.19-1_all.deb ... 207s Unpacking littler (0.3.19-1) ... 207s Selecting previously unselected package node-bootstrap-sass. 207s Preparing to unpack .../120-node-bootstrap-sass_3.4.3-2_all.deb ... 207s Unpacking node-bootstrap-sass (3.4.3-2) ... 207s Selecting previously unselected package node-html5shiv. 207s Preparing to unpack .../121-node-html5shiv_3.7.3+dfsg-5_all.deb ... 207s Unpacking node-html5shiv (3.7.3+dfsg-5) ... 207s Selecting previously unselected package node-normalize.css. 207s Preparing to unpack .../122-node-normalize.css_8.0.1-5_all.deb ... 207s Unpacking node-normalize.css (8.0.1-5) ... 207s Selecting previously unselected package pandoc-data. 207s Preparing to unpack .../123-pandoc-data_3.1.3-1_all.deb ... 207s Unpacking pandoc-data (3.1.3-1) ... 207s Selecting previously unselected package pandoc. 207s Preparing to unpack .../124-pandoc_3.1.3+ds-2_arm64.deb ... 207s Unpacking pandoc (3.1.3+ds-2) ... 208s Selecting previously unselected package pkgconf-bin. 208s Preparing to unpack .../125-pkgconf-bin_1.8.1-2_arm64.deb ... 208s Unpacking pkgconf-bin (1.8.1-2) ... 208s Selecting previously unselected package pkgconf:arm64. 208s Preparing to unpack .../126-pkgconf_1.8.1-2_arm64.deb ... 208s Unpacking pkgconf:arm64 (1.8.1-2) ... 208s Selecting previously unselected package pkg-config:arm64. 208s Preparing to unpack .../127-pkg-config_1.8.1-2_arm64.deb ... 208s Unpacking pkg-config:arm64 (1.8.1-2) ... 208s Selecting previously unselected package liblzma-dev:arm64. 208s Preparing to unpack .../128-liblzma-dev_5.4.5-0.3_arm64.deb ... 208s Unpacking liblzma-dev:arm64 (5.4.5-0.3) ... 208s Selecting previously unselected package r-base-dev. 209s Preparing to unpack .../129-r-base-dev_4.3.2-1build1_all.deb ... 209s Unpacking r-base-dev (4.3.2-1build1) ... 209s Selecting previously unselected package pkg-r-autopkgtest. 209s Preparing to unpack .../130-pkg-r-autopkgtest_20231212ubuntu1_all.deb ... 209s Unpacking pkg-r-autopkgtest (20231212ubuntu1) ... 209s Selecting previously unselected package r-bioc-biocgenerics. 209s Preparing to unpack .../131-r-bioc-biocgenerics_0.48.1-2_all.deb ... 209s Unpacking r-bioc-biocgenerics (0.48.1-2) ... 209s Selecting previously unselected package r-bioc-biobase. 209s Preparing to unpack .../132-r-bioc-biobase_2.62.0-1_arm64.deb ... 209s Unpacking r-bioc-biobase (2.62.0-1) ... 209s Selecting previously unselected package r-cran-cli. 209s Preparing to unpack .../133-r-cran-cli_3.6.2-1_arm64.deb ... 209s Unpacking r-cran-cli (3.6.2-1) ... 209s Selecting previously unselected package r-cran-clipr. 209s Preparing to unpack .../134-r-cran-clipr_0.8.0-1_all.deb ... 209s Unpacking r-cran-clipr (0.8.0-1) ... 209s Selecting previously unselected package r-cran-crayon. 209s Preparing to unpack .../135-r-cran-crayon_1.5.2-1_all.deb ... 209s Unpacking r-cran-crayon (1.5.2-1) ... 209s Selecting previously unselected package r-cran-glue. 209s Preparing to unpack .../136-r-cran-glue_1.7.0-1_arm64.deb ... 209s Unpacking r-cran-glue (1.7.0-1) ... 209s Selecting previously unselected package r-cran-rlang. 209s Preparing to unpack .../137-r-cran-rlang_1.1.3-1_arm64.deb ... 209s Unpacking r-cran-rlang (1.1.3-1) ... 209s Selecting previously unselected package r-cran-lifecycle. 210s Preparing to unpack .../138-r-cran-lifecycle_1.0.4+dfsg-1_all.deb ... 210s Unpacking r-cran-lifecycle (1.0.4+dfsg-1) ... 210s Selecting previously unselected package r-cran-pkgconfig. 210s Preparing to unpack .../139-r-cran-pkgconfig_2.0.3-2build1_all.deb ... 210s Unpacking r-cran-pkgconfig (2.0.3-2build1) ... 210s Selecting previously unselected package r-cran-vctrs. 210s Preparing to unpack .../140-r-cran-vctrs_0.6.5-1_arm64.deb ... 210s Unpacking r-cran-vctrs (0.6.5-1) ... 210s Selecting previously unselected package r-cran-hms. 211s Preparing to unpack .../141-r-cran-hms_1.1.3-1_all.deb ... 211s Unpacking r-cran-hms (1.1.3-1) ... 211s Selecting previously unselected package r-cran-r6. 211s Preparing to unpack .../142-r-cran-r6_2.5.1-1_all.deb ... 211s Unpacking r-cran-r6 (2.5.1-1) ... 211s Selecting previously unselected package r-cran-fansi. 211s Preparing to unpack .../143-r-cran-fansi_1.0.5-1_arm64.deb ... 211s Unpacking r-cran-fansi (1.0.5-1) ... 211s Selecting previously unselected package r-cran-magrittr. 211s Preparing to unpack .../144-r-cran-magrittr_2.0.3-1_arm64.deb ... 211s Unpacking r-cran-magrittr (2.0.3-1) ... 211s Selecting previously unselected package r-cran-utf8. 211s Preparing to unpack .../145-r-cran-utf8_1.2.4-1_arm64.deb ... 211s Unpacking r-cran-utf8 (1.2.4-1) ... 211s Selecting previously unselected package r-cran-pillar. 211s Preparing to unpack .../146-r-cran-pillar_1.9.0+dfsg-1_all.deb ... 211s Unpacking r-cran-pillar (1.9.0+dfsg-1) ... 211s Selecting previously unselected package r-cran-tibble. 211s Preparing to unpack .../147-r-cran-tibble_3.2.1+dfsg-2_arm64.deb ... 211s Unpacking r-cran-tibble (3.2.1+dfsg-2) ... 211s Selecting previously unselected package r-cran-bit. 211s Preparing to unpack .../148-r-cran-bit_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit (4.0.5-1) ... 211s Selecting previously unselected package r-cran-bit64. 211s Preparing to unpack .../149-r-cran-bit64_4.0.5-1_arm64.deb ... 211s Unpacking r-cran-bit64 (4.0.5-1) ... 212s Selecting previously unselected package r-cran-withr. 212s Preparing to unpack .../150-r-cran-withr_2.5.0-1_all.deb ... 212s Unpacking r-cran-withr (2.5.0-1) ... 212s Selecting previously unselected package r-cran-tidyselect. 212s Preparing to unpack .../151-r-cran-tidyselect_1.2.0+dfsg-1_arm64.deb ... 212s Unpacking r-cran-tidyselect (1.2.0+dfsg-1) ... 212s Selecting previously unselected package r-cran-cpp11. 212s Preparing to unpack .../152-r-cran-cpp11_0.4.7-1_all.deb ... 212s Unpacking r-cran-cpp11 (0.4.7-1) ... 212s Selecting previously unselected package r-cran-tzdb. 212s Preparing to unpack .../153-r-cran-tzdb_0.4.0-2_arm64.deb ... 212s Unpacking r-cran-tzdb (0.4.0-2) ... 212s Selecting previously unselected package r-cran-prettyunits. 212s Preparing to unpack .../154-r-cran-prettyunits_1.2.0-1_all.deb ... 212s Unpacking r-cran-prettyunits (1.2.0-1) ... 212s Selecting previously unselected package r-cran-progress. 212s Preparing to unpack .../155-r-cran-progress_1.2.3-1_all.deb ... 212s Unpacking r-cran-progress (1.2.3-1) ... 212s Selecting previously unselected package r-cran-vroom. 212s Preparing to unpack .../156-r-cran-vroom_1.6.5-1_arm64.deb ... 212s Unpacking r-cran-vroom (1.6.5-1) ... 212s Selecting previously unselected package r-cran-pkgkitten. 212s Preparing to unpack .../157-r-cran-pkgkitten_0.2.3-1_all.deb ... 212s Unpacking r-cran-pkgkitten (0.2.3-1) ... 212s Selecting previously unselected package r-cran-rcpp. 212s Preparing to unpack .../158-r-cran-rcpp_1.0.12-1_arm64.deb ... 212s Unpacking r-cran-rcpp (1.0.12-1) ... 212s Selecting previously unselected package r-cran-readr. 212s Preparing to unpack .../159-r-cran-readr_2.1.5-1_arm64.deb ... 212s Unpacking r-cran-readr (2.1.5-1) ... 212s Selecting previously unselected package r-cran-xml2. 212s Preparing to unpack .../160-r-cran-xml2_1.3.6-1_arm64.deb ... 212s Unpacking r-cran-xml2 (1.3.6-1) ... 212s Selecting previously unselected package r-cran-generics. 212s Preparing to unpack .../161-r-cran-generics_0.1.3-1_all.deb ... 212s Unpacking r-cran-generics (0.1.3-1) ... 212s Selecting previously unselected package r-cran-dplyr. 212s Preparing to unpack .../162-r-cran-dplyr_1.1.4-1_arm64.deb ... 212s Unpacking r-cran-dplyr (1.1.4-1) ... 212s Selecting previously unselected package r-cran-data.table. 213s Preparing to unpack .../163-r-cran-data.table_1.14.10+dfsg-1_arm64.deb ... 213s Unpacking r-cran-data.table (1.14.10+dfsg-1) ... 213s Selecting previously unselected package r-cran-purrr. 213s Preparing to unpack .../164-r-cran-purrr_1.0.2-1_arm64.deb ... 213s Unpacking r-cran-purrr (1.0.2-1) ... 213s Selecting previously unselected package r-cran-stringi. 213s Preparing to unpack .../165-r-cran-stringi_1.8.3-1_arm64.deb ... 213s Unpacking r-cran-stringi (1.8.3-1) ... 213s Selecting previously unselected package r-cran-stringr. 213s Preparing to unpack .../166-r-cran-stringr_1.5.1-1_all.deb ... 213s Unpacking r-cran-stringr (1.5.1-1) ... 213s Selecting previously unselected package r-cran-tidyr. 213s Preparing to unpack .../167-r-cran-tidyr_1.3.1-1_arm64.deb ... 213s Unpacking r-cran-tidyr (1.3.1-1) ... 213s Selecting previously unselected package r-cran-statmod. 213s Preparing to unpack .../168-r-cran-statmod_1.5.0-1_arm64.deb ... 213s Unpacking r-cran-statmod (1.5.0-1) ... 213s Selecting previously unselected package r-bioc-limma. 213s Preparing to unpack .../169-r-bioc-limma_3.58.1+dfsg-1_arm64.deb ... 213s Unpacking r-bioc-limma (3.58.1+dfsg-1) ... 213s Selecting previously unselected package r-cran-curl. 213s Preparing to unpack .../170-r-cran-curl_5.2.0+dfsg-1_arm64.deb ... 213s Unpacking r-cran-curl (5.2.0+dfsg-1) ... 213s Selecting previously unselected package r-cran-r.methodss3. 213s Preparing to unpack .../171-r-cran-r.methodss3_1.8.2-1_all.deb ... 213s Unpacking r-cran-r.methodss3 (1.8.2-1) ... 214s Selecting previously unselected package r-cran-r.oo. 214s Preparing to unpack .../172-r-cran-r.oo_1.26.0-1_all.deb ... 214s Unpacking r-cran-r.oo (1.26.0-1) ... 214s Selecting previously unselected package r-cran-r.utils. 214s Preparing to unpack .../173-r-cran-r.utils_2.12.3-1_all.deb ... 214s Unpacking r-cran-r.utils (2.12.3-1) ... 214s Selecting previously unselected package r-bioc-geoquery. 214s Preparing to unpack .../174-r-bioc-geoquery_2.70.0+dfsg-1_all.deb ... 214s Unpacking r-bioc-geoquery (2.70.0+dfsg-1) ... 214s Selecting previously unselected package r-cran-sys. 214s Preparing to unpack .../175-r-cran-sys_3.4.2-1_arm64.deb ... 214s Unpacking r-cran-sys (3.4.2-1) ... 214s Selecting previously unselected package r-cran-askpass. 214s Preparing to unpack .../176-r-cran-askpass_1.2.0-1_arm64.deb ... 214s Unpacking r-cran-askpass (1.2.0-1) ... 214s Selecting previously unselected package r-cran-base64enc. 214s Preparing to unpack .../177-r-cran-base64enc_0.1-3-3_arm64.deb ... 214s Unpacking r-cran-base64enc (0.1-3-3) ... 214s Selecting previously unselected package r-cran-brio. 214s Preparing to unpack .../178-r-cran-brio_1.1.4-1_arm64.deb ... 214s Unpacking r-cran-brio (1.1.4-1) ... 214s Selecting previously unselected package r-cran-fastmap. 214s Preparing to unpack .../179-r-cran-fastmap_1.1.1-1_arm64.deb ... 214s Unpacking r-cran-fastmap (1.1.1-1) ... 214s Selecting previously unselected package r-cran-cachem. 214s Preparing to unpack .../180-r-cran-cachem_1.0.8-1_arm64.deb ... 214s Unpacking r-cran-cachem (1.0.8-1) ... 214s Selecting previously unselected package r-cran-digest. 214s Preparing to unpack .../181-r-cran-digest_0.6.34-1_arm64.deb ... 214s Unpacking r-cran-digest (0.6.34-1) ... 214s Selecting previously unselected package r-cran-ellipsis. 214s Preparing to unpack .../182-r-cran-ellipsis_0.3.2-2_arm64.deb ... 214s Unpacking r-cran-ellipsis (0.3.2-2) ... 214s Selecting previously unselected package r-cran-htmltools. 214s Preparing to unpack .../183-r-cran-htmltools_0.5.7-1_arm64.deb ... 214s Unpacking r-cran-htmltools (0.5.7-1) ... 214s Selecting previously unselected package r-cran-jquerylib. 214s Preparing to unpack .../184-r-cran-jquerylib_0.1.4+dfsg-4_all.deb ... 214s Unpacking r-cran-jquerylib (0.1.4+dfsg-4) ... 214s Selecting previously unselected package r-cran-jsonlite. 214s Preparing to unpack .../185-r-cran-jsonlite_1.8.8+dfsg-1_arm64.deb ... 214s Unpacking r-cran-jsonlite (1.8.8+dfsg-1) ... 214s Selecting previously unselected package r-cran-memoise. 214s Preparing to unpack .../186-r-cran-memoise_2.0.1-1_all.deb ... 214s Unpacking r-cran-memoise (2.0.1-1) ... 214s Selecting previously unselected package r-cran-mime. 214s Preparing to unpack .../187-r-cran-mime_0.12-1_arm64.deb ... 214s Unpacking r-cran-mime (0.12-1) ... 214s Selecting previously unselected package r-cran-fs. 214s Preparing to unpack .../188-r-cran-fs_1.6.3+dfsg-1_arm64.deb ... 214s Unpacking r-cran-fs (1.6.3+dfsg-1) ... 215s Selecting previously unselected package r-cran-rappdirs. 215s Preparing to unpack .../189-r-cran-rappdirs_0.3.3-1_arm64.deb ... 215s Unpacking r-cran-rappdirs (0.3.3-1) ... 215s Selecting previously unselected package r-cran-sass. 215s Preparing to unpack .../190-r-cran-sass_0.4.8+dfsg-1_arm64.deb ... 215s Unpacking r-cran-sass (0.4.8+dfsg-1) ... 215s Selecting previously unselected package r-cran-bslib. 215s Preparing to unpack .../191-r-cran-bslib_0.6.1+dfsg-1_all.deb ... 215s Unpacking r-cran-bslib (0.6.1+dfsg-1) ... 215s Selecting previously unselected package r-cran-ps. 215s Preparing to unpack .../192-r-cran-ps_1.7.6-1_arm64.deb ... 215s Unpacking r-cran-ps (1.7.6-1) ... 215s Selecting previously unselected package r-cran-processx. 215s Preparing to unpack .../193-r-cran-processx_3.8.3-1_arm64.deb ... 215s Unpacking r-cran-processx (3.8.3-1) ... 215s Selecting previously unselected package r-cran-callr. 215s Preparing to unpack .../194-r-cran-callr_3.7.3-2_all.deb ... 215s Unpacking r-cran-callr (3.7.3-2) ... 215s Selecting previously unselected package r-cran-commonmark. 215s Preparing to unpack .../195-r-cran-commonmark_1.9.1-1_arm64.deb ... 215s Unpacking r-cran-commonmark (1.9.1-1) ... 215s Selecting previously unselected package r-cran-lazyeval. 215s Preparing to unpack .../196-r-cran-lazyeval_0.2.2-1build1_arm64.deb ... 215s Unpacking r-cran-lazyeval (0.2.2-1build1) ... 215s Selecting previously unselected package r-cran-rex. 215s Preparing to unpack .../197-r-cran-rex_1.2.1-1_all.deb ... 215s Unpacking r-cran-rex (1.2.1-1) ... 215s Selecting previously unselected package r-cran-openssl. 215s Preparing to unpack .../198-r-cran-openssl_2.1.1+dfsg-2_arm64.deb ... 215s Unpacking r-cran-openssl (2.1.1+dfsg-2) ... 215s Selecting previously unselected package r-cran-httr. 215s Preparing to unpack .../199-r-cran-httr_1.4.7+dfsg-1_all.deb ... 215s Unpacking r-cran-httr (1.4.7+dfsg-1) ... 215s Selecting previously unselected package r-cran-yaml. 215s Preparing to unpack .../200-r-cran-yaml_2.3.8-1_arm64.deb ... 215s Unpacking r-cran-yaml (2.3.8-1) ... 215s Selecting previously unselected package r-cran-covr. 215s Preparing to unpack .../201-r-cran-covr_3.6.4+dfsg-1_arm64.deb ... 215s Unpacking r-cran-covr (3.6.4+dfsg-1) ... 215s Selecting previously unselected package r-cran-desc. 215s Preparing to unpack .../202-r-cran-desc_1.4.3-1_all.deb ... 215s Unpacking r-cran-desc (1.4.3-1) ... 215s Selecting previously unselected package r-cran-diffobj. 215s Preparing to unpack .../203-r-cran-diffobj_0.3.5-1_arm64.deb ... 215s Unpacking r-cran-diffobj (0.3.5-1) ... 215s Selecting previously unselected package r-cran-evaluate. 215s Preparing to unpack .../204-r-cran-evaluate_0.23-1_all.deb ... 215s Unpacking r-cran-evaluate (0.23-1) ... 215s Selecting previously unselected package r-cran-fontawesome. 215s Preparing to unpack .../205-r-cran-fontawesome_0.5.2-1_all.deb ... 215s Unpacking r-cran-fontawesome (0.5.2-1) ... 215s Selecting previously unselected package r-cran-xfun. 216s Preparing to unpack .../206-r-cran-xfun_0.41+dfsg-1_arm64.deb ... 216s Unpacking r-cran-xfun (0.41+dfsg-1) ... 216s Selecting previously unselected package r-cran-highr. 216s Preparing to unpack .../207-r-cran-highr_0.10+dfsg-1_all.deb ... 216s Unpacking r-cran-highr (0.10+dfsg-1) ... 216s Selecting previously unselected package r-cran-later. 216s Preparing to unpack .../208-r-cran-later_1.3.2+dfsg-1_arm64.deb ... 216s Unpacking r-cran-later (1.3.2+dfsg-1) ... 216s Selecting previously unselected package r-cran-promises. 216s Preparing to unpack .../209-r-cran-promises_1.2.1+dfsg-1_arm64.deb ... 216s Unpacking r-cran-promises (1.2.1+dfsg-1) ... 216s Selecting previously unselected package r-cran-httpuv. 216s Preparing to unpack .../210-r-cran-httpuv_1.6.14+dfsg-1_arm64.deb ... 216s Unpacking r-cran-httpuv (1.6.14+dfsg-1) ... 216s Selecting previously unselected package libjs-mathjax. 216s Preparing to unpack .../211-libjs-mathjax_2.7.9+dfsg-1_all.deb ... 216s Unpacking libjs-mathjax (2.7.9+dfsg-1) ... 216s Selecting previously unselected package r-cran-knitr. 216s Preparing to unpack .../212-r-cran-knitr_1.45+dfsg-1_all.deb ... 216s Unpacking r-cran-knitr (1.45+dfsg-1) ... 216s Selecting previously unselected package r-cran-markdown. 216s Preparing to unpack .../213-r-cran-markdown_1.12+dfsg-1_all.deb ... 216s Unpacking r-cran-markdown (1.12+dfsg-1) ... 216s Selecting previously unselected package r-cran-pkgbuild. 217s Preparing to unpack .../214-r-cran-pkgbuild_1.4.3-1_all.deb ... 217s Unpacking r-cran-pkgbuild (1.4.3-1) ... 217s Selecting previously unselected package r-cran-rprojroot. 217s Preparing to unpack .../215-r-cran-rprojroot_2.0.4-1_all.deb ... 217s Unpacking r-cran-rprojroot (2.0.4-1) ... 217s Selecting previously unselected package r-cran-pkgload. 217s Preparing to unpack .../216-r-cran-pkgload_1.3.4-1_all.deb ... 217s Unpacking r-cran-pkgload (1.3.4-1) ... 217s Selecting previously unselected package r-cran-praise. 217s Preparing to unpack .../217-r-cran-praise_1.0.0-4build1_all.deb ... 217s Unpacking r-cran-praise (1.0.0-4build1) ... 217s Selecting previously unselected package r-cran-rematch2. 217s Preparing to unpack .../218-r-cran-rematch2_2.1.2-2build1_all.deb ... 217s Unpacking r-cran-rematch2 (2.1.2-2build1) ... 217s Selecting previously unselected package r-cran-tinytex. 217s Preparing to unpack .../219-r-cran-tinytex_0.49-1_all.deb ... 217s Unpacking r-cran-tinytex (0.49-1) 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218s 218s Creating config file /etc/papersize with new version 218s Setting up fonts-mathjax (2.7.9+dfsg-1) ... 218s Setting up liblerc4:arm64 (4.0.0+ds-4ubuntu1) ... 218s Setting up libjs-mathjax (2.7.9+dfsg-1) ... 218s Setting up libxrender1:arm64 (1:0.9.10-1.1) ... 218s Setting up libdatrie1:arm64 (0.2.13-3) ... 218s Setting up libjs-popper.js (1.16.1+ds-6) ... 218s Setting up libxcb-render0:arm64 (1.15-1) ... 218s Setting up libjs-sifter.js (0.6.0+dfsg-3) ... 218s Setting up fonts-glyphicons-halflings (1.009~3.4.1+dfsg-3) ... 218s Setting up unzip (6.0-28ubuntu3) ... 218s Setting up x11-common (1:7.7+23ubuntu2) ... 219s Setting up node-html5shiv (3.7.3+dfsg-5) ... 219s Setting up libdeflate0:arm64 (1.19-1) ... 219s Setting up linux-libc-dev:arm64 (6.8.0-11.11) ... 219s Setting up libjs-microplugin.js (0.0.3+dfsg-1.1) ... 219s Setting up libxcb-shm0:arm64 (1.15-1) ... 219s Setting up libpaper-utils (1.1.29) ... 219s Setting up libgomp1:arm64 (14-20240303-1ubuntu1) ... 219s Setting 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r-cran-pkgload (1.3.4-1) ... 222s Setting up r-cran-r.utils (2.12.3-1) ... 222s Setting up r-cran-vroom (1.6.5-1) ... 222s Setting up r-cran-httpuv (1.6.14+dfsg-1) ... 222s Setting up r-cran-rematch2 (2.1.2-2build1) ... 222s Setting up r-cran-fontawesome (0.5.2-1) ... 222s Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... 222s Setting up r-cran-bslib (0.6.1+dfsg-1) ... 222s Setting up r-cran-readr (2.1.5-1) ... 222s Setting up r-cran-waldo (0.5.2-1build1) ... 222s Setting up r-cran-tidyr (1.3.1-1) ... 222s Setting up r-cran-shiny (1.8.0+dfsg-1) ... 222s Setting up r-cran-testthat (3.2.1-1) ... 222s Setting up r-bioc-geoquery (2.70.0+dfsg-1) ... 222s Setting up r-cran-rmarkdown (2.25+dfsg-3) ... 222s Setting up autopkgtest-satdep (0) ... 222s Processing triggers for man-db (2.12.0-3) ... 223s Processing triggers for install-info (7.1-3) ... 223s Processing triggers for libc-bin (2.39-0ubuntu2) ... 233s (Reading database ... 96204 files and directories currently installed.) 233s Removing autopkgtest-satdep (0) ... 234s autopkgtest [17:35:37]: test pkg-r-autopkgtest: /usr/share/dh-r/pkg-r-autopkgtest 234s autopkgtest [17:35:37]: test pkg-r-autopkgtest: [----------------------- 234s Test: Try to load the R library GEOquery 234s 234s R version 4.3.2 (2023-10-31) -- "Eye Holes" 234s Copyright (C) 2023 The R Foundation for Statistical Computing 234s Platform: aarch64-unknown-linux-gnu (64-bit) 234s 234s R is free software and comes with ABSOLUTELY NO WARRANTY. 234s You are welcome to redistribute it under certain conditions. 234s Type 'license()' or 'licence()' for distribution details. 234s 234s R is a collaborative project with many contributors. 234s Type 'contributors()' for more information and 234s 'citation()' on how to cite R or R packages in publications. 234s 234s Type 'demo()' for some demos, 'help()' for on-line help, or 234s 'help.start()' for an HTML browser interface to help. 234s Type 'q()' to quit R. 234s 235s > library('GEOquery') 235s Loading required package: Biobase 235s Loading required package: BiocGenerics 235s 235s Attaching package: ‘BiocGenerics’ 235s 235s The following objects are masked from ‘package:stats’: 235s 235s IQR, mad, sd, var, xtabs 235s 235s The following objects are masked from ‘package:base’: 235s 235s anyDuplicated, aperm, append, as.data.frame, basename, cbind, 235s colnames, dirname, do.call, duplicated, eval, evalq, Filter, Find, 235s get, grep, grepl, intersect, is.unsorted, lapply, Map, mapply, 235s match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, 235s Position, rank, rbind, Reduce, rownames, sapply, setdiff, sort, 235s table, tapply, union, unique, unsplit, which.max, which.min 235s 235s Welcome to Bioconductor 235s 235s Vignettes contain introductory material; view with 235s 'browseVignettes()'. To cite Bioconductor, see 235s 'citation("Biobase")', and for packages 'citation("pkgname")'. 235s 237s Setting options('download.file.method.GEOquery'='auto') 237s Setting options('GEOquery.inmemory.gpl'=FALSE) 237s > 237s > 238s Other tests are currently unsupported! 238s They will be progressively added. 238s autopkgtest [17:35:41]: test pkg-r-autopkgtest: -----------------------] 238s pkg-r-autopkgtest PASS 238s autopkgtest [17:35:41]: test pkg-r-autopkgtest: - - - - - - - - - - results - - - - - - - - - - 239s autopkgtest [17:35:42]: @@@@@@@@@@@@@@@@@@@@ summary 239s pkg-r-autopkgtest PASS 249s Creating nova instance adt-noble-arm64-r-bioc-geoquery-20240316-173143-juju-7f2275-prod-proposed-migration-environment-3 from image adt/ubuntu-noble-arm64-server-20240314.img (UUID 7faf5f09-d335-4346-a441-4eab2f9c04fe)...